ID:

dmo_1398

 Coordinate:

scaffold_6498:2426301-2426451 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dmoj\GI14017-cds]; exon [dmoj_GLEANR_14039:2]; intron [Dmoj\GI14017-in]

No Repeatable elements found

mature
  1. scaffold_6482:1412935-1412955 -
  2. dmo_1398  scaffold_6498:2426382-2426402 -
  3. scaffold_6498:2431823-2431843 -
star
  1. scaffold_6482:1412966-1412986 -
  2. dmo_1398  scaffold_6498:2426413-2426433 -
  3. scaffold_6498:2431854-2431874 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCAGTGGAATCACACTGAAGACTCTGAGTGTCATACGCCAGAGCCCGACGTGAGAAACCACTTGTTTCCAGGCACCGCACCGCGGCCCAATGAGGGTGGCACAGCTCAGCCCGGAGTGTTATACGCCCAGGCTGAGTAGGCAAGGGAACGTGTGCGAGGGGACCAGCAACTGGTCAACTCCGGGAGTCAGGGCGCGGCGGGGACGCATGAAAGATTCCGGGCGTTATACGCCAGAATTTGGACTGGGAAG
********************************************************************((.(((...((...((.((((.....)))).))...))...))).)).....*********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V056
head
 V041
embryo
..............................................CGACGTGAGAAACCACTTGTTTCCAGG.................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
...............................................GACGTGAGAAACCACTTGTTTCCAGGC................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
GGCAGTGGAATCACACTGAAGAC.................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................AGGCAAGGGAACGTGAGCC.............................................................................................. 19 2 3 0.67 2 0 2 0 0 0
............................................................................................................................................GCAAGGGAACGTGTGCTGG............................................................................................ 19 2 2 0.50 1 0 0 1 0 0
...................................................................................................GCACAGCTCAGCCCGGAGTGT................................................................................................................................... 21 0 3 0.33 1 0 1 0 0 0
..........................................................................................................................................ATGCAAGGGAACGTGTGCTGG............................................................................................ 21 3 3 0.33 1 0 0 1 0 0
..........................................................................................................TCAGCCCGGAGTGTTATACGCCCCG........................................................................................................................ 25 1 3 0.33 1 0 0 0 0 1
..........................................................................................................................................ATGCAAGGGAACGTGTGCT.............................................................................................. 19 2 3 0.33 1 0 0 1 0 0
...............................................................................................GGGGGCATAGCTCAGCCGGGAG...................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0
....................................................................CCAGGCACCGCACCGCGGCCC.................................................................................................................................................................. 21 0 3 0.33 1 0 1 0 0 0
...................................................................TCCAGGCACCGCACCGCG...................................................................................................................................................................... 18 0 3 0.33 1 0 1 0 0 0
..................................................................TGCCAGGCACCGCACCGCGGC.................................................................................................................................................................... 21 1 3 0.33 1 0 1 0 0 0
.........................................................................................................................................................................GCGGGTCAACTGCGGGAGT............................................................... 19 3 11 0.27 3 0 0 3 0 0
...........................................................................................................................................................................GGGTCAACTGCGGGAGTA.............................................................. 18 3 20 0.20 4 0 0 4 0 0
..........................................................................................................................................ATGCAAGGGAACGTGTGCTG............................................................................................. 20 3 6 0.17 1 1 0 0 0 0
GGCAGTGGAATCAGACTGAAGACC................................................................................................................................................................................................................................... 24 2 7 0.14 1 0 1 0 0 0
...............................................GCCGTGATAAATCACTTGTT........................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 1 0
..........................................................................................................................................................................CGGGTCAACGGCGGGAGTC.............................................................. 19 3 8 0.13 1 1 0 0 0 0
...............................................................................................GGTGGCATAGCTCAGCTGGGA....................................................................................................................................... 21 3 8 0.13 1 0 0 1 0 0
...............................................GACGTGAGAAACCACTGGTTTCC..................................................................................................................................................................................... 23 1 9 0.11 1 0 1 0 0 0
..........................................................................................................................................AGGCAAGGGAACGTAAGC............................................................................................... 18 2 9 0.11 1 0 1 0 0 0
.............................................................................................................................................................................TTCATATCCGGGAGTCAG............................................................ 18 3 20 0.10 2 2 0 0 0 0
..........................................................................................................................................................................CGGGTAAACGCCGGGAGT............................................................... 18 3 10 0.10 1 1 0 0 0 0
..................................................................................................GGCATAGCTCAGCTGGGAGTG.................................................................................................................................... 21 3 10 0.10 1 0 0 1 0 0
............................................................................................................................................GCAAGGGAACGTGAGCC.............................................................................................. 17 2 11 0.09 1 0 0 0 1 0
...............................................................................................................................................................................................GGCACTGCGGTGACGCATGA........................................ 20 3 11 0.09 1 1 0 0 0 0
.........................................................................................................................................TAAGCAAGGGAACGTGAGCT.............................................................................................. 20 3 12 0.08 1 0 0 0 0 1
............................................................................................................................................GCAAGGGAACGTGCGCT.............................................................................................. 17 2 12 0.08 1 0 0 0 1 0
............................................................................................................................................GCAAGGGAACGTGCGCA.............................................................................................. 17 2 12 0.08 1 0 0 0 1 0
........................................................................................................................................GTAGCAAATGGAACGTGTGC............................................................................................... 20 3 12 0.08 1 1 0 0 0 0
...........................................................................................................................................................................GGGTCAACGGCGGGAGTC.............................................................. 18 3 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................................CGGGTAAACGCCGGGAG................................................................ 17 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

CCGTCACCTTAGTGTGACTTCTGAGACTCACAGTATGCGGTCTCGGGCTGCACTCTTTGGTGAACAAAGGTCCGTGGCGTGGCGCCGGGTTACTCCCACCGTGTCGAGTCGGGCCTCACAATATGCGGGTCCGACTCATCCGTTCCCTTGCACACGCTCCCCTGGTCGTTGACCAGTTGAGGCCCTCAGTCCCGCGCCGCCCCTGCGTACTTTCTAAGGCCCGCAATATGCGGTCTTAAACCTGACCCTTC
***********************************************************************************************************************************((.(((...((...((.((((.....)))).))...))...))).)).....******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body		 V056
head
...................................................................................................CGTGTCGAGTCGGGCCTCACAATAT............................................................................................................................... 25 0 3 2.00 6 4 2 0 0 0
..................................................................................................CCGTGTCGAGTCGGGCCTCACAATAT............................................................................................................................... 26 0 3 1.67 5 0 3 1 1 0
...............................................................................................................................................................................................CCGCGCCGCCCCTGCGTACTTTCT.................................... 24 0 2 1.00 2 0 2 0 0 0
...............................................................................................CCACCGTGTCGAGTCGGGCCTCACAATAT............................................................................................................................... 29 0 3 1.00 3 1 2 0 0 0
.........................................................................GTGGCGTGGCGCCGGGTTACTC............................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
...............................AGTATGCGGTCTCGGGCTGCACTCT................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................GTCCCGCGCCGCCCCTGCGTACTTTCT.................................... 27 0 2 0.50 1 1 0 0 0 0
................................GTATGCGGTCTCGGGCTGCACTCTT.................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................CCCGCGCCGCCCCTGCGTACTTTCT.................................... 25 0 2 0.50 1 1 0 0 0 0
...................................TGCGGTCTCGGGCTGCACTCTT.................................................................................................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................CAGTCCCGCGCCGCCCCTGCGTACTT....................................... 26 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................................GTCCCGCGCCGCCCCTGCGTACTT....................................... 24 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................CAGTCCCGCGCCGCCCCTGCGTACT........................................ 25 0 2 0.50 1 1 0 0 0 0
.....................................CGGTCTCGGGCTGCACTCTT.................................................................................................................................................................................................. 20 0 6 0.50 3 1 1 0 1 0
.............................................................................................................CGGGCCTCACAATATGCGGG.......................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0
...............................................................................................CCACCGTGTCGAGTCGGGCCTCACAA.................................................................................................................................. 26 0 3 0.33 1 0 1 0 0 0
.....................................................................................................TGTCGAGTCGGGCCTCACAATAT............................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
....................................................................................................GTGTCGTCTCGGTCCTCACAAT................................................................................................................................. 22 3 3 0.33 1 0 0 1 0 0
..............................................................................................CCCACCGTGTCGAGTCGGGCCTCACAAT................................................................................................................................. 28 0 3 0.33 1 1 0 0 0 0
.............................................................................................................CGGGCCTCACAATATGCGGGT......................................................................................................................... 21 0 3 0.33 1 0 0 1 0 0
...............................................................................................CCACCGTGTCGAGTCGGGCCTCACAACAT............................................................................................................................... 29 1 3 0.33 1 0 1 0 0 0
................................................................................................CACCGTGTCGAGTCGGGCCTCACAAT................................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................................CCCGCGCCGCCCCTGCGTACTT....................................... 22 0 6 0.33 2 1 1 0 0 0
.....................................CGGTCTCGGGCTGCACTCTTTGGT.............................................................................................................................................................................................. 24 0 5 0.20 1 1 0 0 0 0
.............................................................................................................................................................................................TCCCGCGCCGCCCCTGCGTACTTCCT.................................... 26 1 6 0.17 1 1 0 0 0 0
.................CTTATGAGGGTCACAGTAT....................................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1
....................................................................................................GTGTCGAGTAGGGGCTCAA.................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:2426251-2426501 - dmo_1398 GGCAGTGGAATCACACTGAAGACTCTGAGTGTCATACGCCAGAGCCCGACGTGAGAAACCACTTGTTTCCAGGCACCGCACCGCGGCCCAATGAGGGTGGCACAGCTCAGCCCGGA--GTGTTATACGCCCAGGCTGAGTAGGCAAGGGAACGTGTGCGAGGGGACCAGCAACTGGTCAACTCCGGGAGTCAGGGCGCGGCGGGGACGCATGAAAGATTCCGGGCGTTATACGCCAGAATTTGGACTGGGAAG
droWil2 scf2_1100000012052:536-544 + GGCAGTGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_9617:4697-4748 + --------------------------------------------------------------------------ACTGCGCCGCAGCCCAACGAAGGCTTCGAAGTACAGCCCGGGTAGTATTCTA-------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395642:5755-5806 + --------------------------------------------------------------------------ACTGCGCCGCAGCCCAACGAAGGCTTCAAAGTACAGCCCGGGTAGTATTTTA-------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:114231-114247 - GACAGTGGCATTGCATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GGCAGTGGAATCACACTGAAGACTCTGAGTGTCATACGCCAGAGCCCGACGTGAGAAACCACTTGTTTCCAGGCACCGCACCGCGGCCCAATGAGGGTGGCACAGCTCAGCCCGGA--GTGTTATACGCCCAGGCTGAGTAGGCAAGGGAACGTGTGCGAGGGGACCAGCAACTGGTCAACTCCGGGAGTCAGGGCGCGGCGGGGACGCATGAAAGATTCCGGGCGTTATACGCCAGAATTTGGACTGGGAAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................CGACGTGAGAAACCACTTGTTTCCAGG....................................................................................................................................................................................2711.001100000
...............................................GACGTGAGAAACCACTTGTTTCCAGGC...................................................................................................................................................................................2711.001100000
GGCAGTGGAATCACACTGAAGAC......................................................................................................................................................................................................................................2311.001100000
...................................................................................................GCACAGCTCAGCCCGGA--GTGT...................................................................................................................................2130.331000010
....................................................................CCAGGCACCGCACCGCGGCCC....................................................................................................................................................................2130.331000010
...................................................................TCCAGGCACCGCACCGCG........................................................................................................................................................................1830.331000010
droWil2
GGCAGTGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droAna3
--------------------------------------------------------------------------ACTGCGCCGCAGCCCAACGAAGGCTTCGAAGTACAGCCCGGGTAGTATTCTA-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................TGCGCCGCAGCCCAACGAAGGCTTC........................................................................................................................................................25200.102200000
............................................................................TGCGCCGCAGCCCAACGAAGG............................................................................................................................................................21200.051100000
.........................................................................................AACGAAGGCTTCGAAGTACAGCCC............................................................................................................................................24200.051010000
..................................................................................................TTCGAAGTACAGCCCGGGTAG......................................................................................................................................21200.051100000
..........................................................................ACTGCGCCGCAGCCCAACGAAGGCTTCG.......................................................................................................................................................28200.051100000
.......................................................................................................AGTACAGCCCGGGTAGTATT..................................................................................................................................20200.051100000
...................................................................................CAGCCCAACGAAGGCTTCGAAGT...................................................................................................................................................23200.051010000
........................................................................................CAACGAAGGCTTCGAAGTACAGCCC............................................................................................................................................25200.051010000
............................................................................TGCGCCGCAGCCCAACGAAGGCTT.........................................................................................................................................................24200.051010000
....................................................................................................CGAAGTACAGCCCGGGTAGTATTCT................................................................................................................................25200.051000010
.......................................................................................CCAACGAAGGCTTCGAAGTACAGCCC............................................................................................................................................26200.051010000
........................................................................................CAACGAAGGCTTCGAAGTACAGCC.............................................................................................................................................24200.051010000
droBip1
--------------------------------------------------------------------------ACTGCGCCGCAGCCCAACGAAGGCTTCAAAGTACAGCCCGGGTAGTATTTTA-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEre2
GACAGTGGCATTGCATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:25 AM