ID:

dmo_1397

 Coordinate:

scaffold_6498:2426026-2426176 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-18.1 -17.9 -17.8

Flybase annnotation

CDS [Dmoj\GI14017-cds]; exon [dmoj_GLEANR_14039:3]; intron [Dmoj\GI14017-in]

No Repeatable elements found

mature
  1. scaffold_3494:5579-5601 -
  2. scaffold_6482:1412609-1412631 -
  3. dmo_1397  scaffold_6498:2426083-2426105 -
  4. scaffold_6498:2431492-2431514 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGGCCATAGGTGTCTCGCCGCCGCCCGTGACAATGATCTCACTATTACACGCCAAGTGTCATATACAGGAGCGGGATTGTGGGGAATCCGCGTGGCTGGAGGCAAGATAGGCTGGGGTTAGCTTTCGAGACAACCGGCCATGGCACATAGTGGGTGCAGTGTGACCCAGCTCCGAGTGTTATGTGTGTTATGCACCATAGCTGAGACGACACACTGGTTGGTTGTCGGTGGCGAGGGCGGCCTATCGGTT
*************************************************************************************************************************..........((....((((((((((..(((((((........))))).))....)))))))).))....))...******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V049
head
 V056
head
.........................................................................................................................GCTTTCGAGACAACCGGCCATGG........................................................................................................... 23 0 4 2.50 10 10 0 0 0 0
...........................................................................................................................................................................TCCGAGTGTTATGTGTGTTATGCAC....................................................... 25 0 1 2.00 2 1 0 1 0 0
.............................................................................................................................................................................CGAGTGTTATGTGTGTTATGCACC...................................................... 24 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................CATAGCTGAGACGACACACTGGTTGG............................. 26 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................TCCGAGTGTTATGTGTGTTATG.......................................................... 22 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................TCCGAGTGTTATGTGTGTTATGCACCC..................................................... 27 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................GCTTTCGAGACAACCGGCCATGGC.......................................................................................................... 24 0 4 1.00 4 3 0 1 0 0
.............................................................................................................................................................................CGAGTGTTATGTGTGTTATGC......................................................... 21 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................TCCGAGTGTTATGTGTGT.............................................................. 18 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................GCTGAGACGACACACTGGTTGGTTG.......................... 25 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................CCGAGTGTTATGTGTGTTATGCACCA..................................................... 26 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................CCGAGTGTTATGTGTGTTATGCA........................................................ 23 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................TATGCACCATAGCTGAGACGACA....................................... 23 0 2 0.50 1 1 0 0 0 0
...................................................GCCAAGTGTCATATACCGGAGCGGG............................................................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
.........................................................................................................................GCTTTCGAGACAACCGGCCATGGCACA....................................................................................................... 27 0 4 0.50 2 2 0 0 0 0
................................................................................................................TTGGGGTTAGCTTTCGAGACAA..................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0
.........................................................................................................................GCTTTCGAGACAACCGGCCATGGCA......................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
............................................................................................................................TTCGAGACAACCGGCCATGGCAC........................................................................................................ 23 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................GCCTTCGAGACAACCGGCCATGG........................................................................................................... 23 1 4 0.25 1 0 0 1 0 0
.........................................................................................................................GCTTTCGAGACAACCGGCCATGGCAC........................................................................................................ 26 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................GCTTTCGAGACAACCGGCCAC............................................................................................................. 21 1 4 0.25 1 0 0 1 0 0
.......................................................................................................................TAGCTTTCGAGACAACCGG................................................................................................................. 19 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................GCTTTCGAGACAACCCGCCAC............................................................................................................. 21 2 4 0.25 1 0 0 1 0 0
.............................................................................................................................TCGAGACAACCGGCCATGGCA......................................................................................................... 21 0 5 0.20 1 1 0 0 0 0
..................................................................................................................................................................................................................................CGGTGGCGAAGGCGGCCA....... 18 2 17 0.12 2 0 0 0 2 0
..................................................................................................................................................................................................................CATACTTGTTAGTTGTCGGT..................... 20 3 10 0.10 1 0 1 0 0 0
.................................................................................................................................................................................................................................CCGGTGGCGAGGGCGGCA........ 18 2 20 0.05 1 1 0 0 0 0
..............................................................................................................TGATAGGGTTAGCTTTCGA.......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

AACCGGTATCCACAGAGCGGCGGCGGGCACTGTTACTAGAGTGATAATGTGCGGTTCACAGTATATGTCCTCGCCCTAACACCCCTTAGGCGCACCGACCTCCGTTCTATCCGACCCCAATCGAAAGCTCTGTTGGCCGGTACCGTGTATCACCCACGTCACACTGGGTCGAGGCTCACAATACACACAATACGTGGTATCGACTCTGCTGTGTGACCAACCAACAGCCACCGCTCCCGCCGGATAGCCAA
*******************************************************..........((....((((((((((..(((((((........))))).))....)))))))).))....))...************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V110
male body		 V041
embryo
 V056
head
 V049
head
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCTCACAA...................................................................... 28 0 4 21.00 84 65 15 4 0 0 0
............................................................................................................................................................CGTCACACTGGGTCGAGGCTCACAA...................................................................... 25 0 4 14.00 56 38 16 2 0 0 0
..........................................................................................................................................................CACGTCACACTGGGTCGAGGCTCACAA...................................................................... 27 0 4 11.25 45 26 18 1 0 0 0
........................................................................................................................................................CCCACGTCACACTGGGTCGAGGCTCACAA...................................................................... 29 0 4 5.00 20 16 4 0 0 0 0
.........................................................................................................TCTATCCGACCCCAATCGAAAGCTCT........................................................................................................................ 26 0 3 2.67 8 0 8 0 0 0 0
.............................................................................................................................................................GTCACACTGGGTCGAGGCTCACAA...................................................................... 24 0 4 2.50 10 4 6 0 0 0 0
..............................................................................................................................................................TCACACTGGGTCGAGGCTCACAA...................................................................... 23 0 4 2.50 10 5 5 0 0 0 0
........................................................................................................................................................CCCACGTCACACTGGGTCGAGGCT........................................................................... 24 0 5 2.40 12 8 4 0 0 0 0
...........................................................................................................................................................ACGTCACACTGGGTCGAGGCTCACAA...................................................................... 26 0 4 1.50 6 1 3 1 0 1 0
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCTCAAAA...................................................................... 28 1 4 1.25 5 5 0 0 0 0 0
............................................................................................................................................................CGTCACACTGGGTCGAGGCTCACAAT..................................................................... 26 0 4 1.25 5 2 3 0 0 0 0
.......................................................................................................................................................................GTCGAGGCTCACAATACACACAA............................................................. 23 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................TCGAGGCTCACAATACACACAATAC.......................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................GTTCTATCCGACCCCAATCGAAAGCT.......................................................................................................................... 26 0 3 1.00 3 0 3 0 0 0 0
..........................................................................................................CTATCCGACCCCAATCGAAAGCTCT........................................................................................................................ 25 0 3 1.00 3 1 2 0 0 0 0
...............................................................................................................................................................CACACTGGGTCGAGGCTCACAAT..................................................................... 23 0 4 1.00 4 4 0 0 0 0 0
...............................................................................................................................................................CACACTGGGTCGAGGCTCACAA...................................................................... 22 0 4 1.00 4 2 2 0 0 0 0
.......................................................................................................................................................................GTCGAGGCTCACAATACACACAATA........................................................... 25 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................CGTCACACTGGGTCGAGGCTCACGA...................................................................... 25 1 4 1.00 4 4 0 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCTCACGA...................................................................... 28 1 4 1.00 4 4 0 0 0 0 0
....................................................................................................................................................................TGGGTCGAGGCTCACAATACACACAA............................................................. 26 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................GTCACACTGGGTCGAGGCTCACAAT..................................................................... 25 0 4 0.75 3 0 3 0 0 0 0
............................................................................................................................................................CGTCACACTGGGTCGAGGCTCAAAA...................................................................... 25 1 4 0.75 3 3 0 0 0 0 0
.....................................................................................................CCGTTCTATCCGACCCCAATCGAAAGCT.......................................................................................................................... 28 0 3 0.67 2 1 1 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCT........................................................................... 23 0 5 0.60 3 2 1 0 0 0 0
............................................................................................................................................................CGTCACACTGGGTCGAGGCTCACA....................................................................... 24 0 5 0.60 3 1 2 0 0 0 0
......................................................................................TAGGCGCACCGACCTCCGTTCTAT............................................................................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................................................................................CACGTCACACTGGGTCGAGGCTCACGA...................................................................... 27 1 4 0.50 2 2 0 0 0 0 0
..............................................................................................................................................................TCACACTGGGTCGAGGCTCACAAT..................................................................... 24 0 4 0.50 2 0 1 1 0 0 0
............................................................................................................................................................CGTCACACTGGGTCGAGGCTCACAATA.................................................................... 27 0 4 0.50 2 1 0 0 1 0 0
................................................................................................................................................................ACACTGGGTCGAGGCTCACAAT..................................................................... 22 0 4 0.50 2 1 1 0 0 0 0
........................................GTGATAAGGTGCGGTTCACAGTAT........................................................................................................................................................................................... 24 1 2 0.50 1 0 1 0 0 0 0
...............................................................................................................................................................................................ACGTGGTATCGACTCTGCTGTGTGA................................... 25 0 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................................CCCACGTCACACTGGGTCGAGGGT........................................................................... 24 1 5 0.40 2 2 0 0 0 0 0
..........................................................................................................CTATCCGACCCCAATCGAAAGCTCTGTT..................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0
......................................................................................................CGTTCTATCCGACCCCAATCGAAAGCT.......................................................................................................................... 27 0 3 0.33 1 0 1 0 0 0 0
........................................................................................................TTCTATCCGACCCCAATCGAAAGCTCT........................................................................................................................ 27 0 3 0.33 1 0 1 0 0 0 0
.............................................................................................................TCCGACCCCAATCGAAAGCTCTGTT..................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0
...........................................................................................................................................GTACCGTGTATCACCCACGTCACACT...................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
.....................................................................................................CCGTTCTATCCGACCCCAATCGAAAGC........................................................................................................................... 27 0 3 0.33 1 0 1 0 0 0 0
...........................................................................................................AATCCGACCCCAATCGAAAGCTCT........................................................................................................................ 24 1 3 0.33 1 0 1 0 0 0 0
.........................................................................................................TCTATCCGACCCCAATCGAAAGCTC......................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0
.............................................................................................................TCCGACCCCAATCGAAAGCTCT........................................................................................................................ 22 0 3 0.33 1 1 0 0 0 0 0
..........................................................................................................................................................CACGTCACACTGGGTCAAGGCTCACAA...................................................................... 27 1 4 0.25 1 0 1 0 0 0 0
............................................................................................................................................................CGTCACACTGGGTCGAGGCTCTCAA...................................................................... 25 1 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCTCACAAT..................................................................... 29 0 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................AAACGTCACACTGGGTCGAGGCTCACAA...................................................................... 28 2 4 0.25 1 0 1 0 0 0 0
.........................................................................................................................................................CCAGGTCACACTGGGTCGAGGCTCACAA...................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCGCACAA...................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
..........................................................................................................................................................CACGTCACACTGGGTCGAGGCTCATAAT..................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
........................................................................................................................................................CCCACGTCACACTGGGTCGAGGCTCACGA...................................................................... 29 1 4 0.25 1 1 0 0 0 0 0
..........................................................................................................................................................CACGTCACACTGGGTCGAGGCTCACAAT..................................................................... 28 0 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................CCTCACACTGGGTCGAGGCTCACAATA.................................................................... 27 1 4 0.25 1 0 1 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGCTCGAGGCTCACAA...................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
..........................................................................................................................................................CACGTCACACTCGGTCGAGGCTCACAA...................................................................... 27 1 4 0.25 1 0 1 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTCTAGGCTCACAA...................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................TCACACTGGGTCGAGGCTCAAAA...................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
.............................................................................................................................................................GTCACACTGGGTGGAGGCTCACAA...................................................................... 24 1 4 0.25 1 0 1 0 0 0 0
..........................................................................................................................................................CACGTCACACTGGGTCGAGGCTCACAATA.................................................................... 29 0 4 0.25 1 1 0 0 0 0 0
..........................................................................................................................................................CACGTCACACTGGGTCGAGGCTCAAAA...................................................................... 27 1 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................CCACGTCACACGGGGTCGAGGCTCACAA...................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
.................................................................................................................................................................CACTGGGTCGAGGCTCACAA...................................................................... 20 0 4 0.25 1 0 1 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTAGAGGCTCACAA...................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................CCACGTCACACGGGGTCGAGCCTCACAA...................................................................... 28 2 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCTCACAAC..................................................................... 29 1 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................TCACACGGGGTCGAGGCTCACAA...................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
...............................................................................................................................................................CACACTGGGTCGAGGCTCACAATAC................................................................... 25 0 4 0.25 1 0 1 0 0 0 0
...................................................................................................................................................................CTGGGTCGAGGCTCACAA...................................................................... 18 0 4 0.25 1 1 0 0 0 0 0
..................................................................................................................................................................ACTGGGTCGAGGCTCACAA...................................................................... 19 0 4 0.25 1 0 1 0 0 0 0
................................................................................................................................................................ACACTGGGTCGAGGCTCACAATA.................................................................... 23 0 4 0.25 1 0 1 0 0 0 0
...............................................................................................................................................................CACACTGGGTCGAGGCTCAAAA...................................................................... 22 1 4 0.25 1 1 0 0 0 0 0
........................................................................................................................................................CCCACGTCACACTGGGTCGAGGCTCTCAA...................................................................... 29 1 4 0.25 1 1 0 0 0 0 0
........................................................................................................................................................CCCACGTCACACTGGGTCGAGGCTCAAAA...................................................................... 29 1 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCTTACAA...................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................CGAAAGCTCTGTTGGCCGGTACCGTGT....................................................................................................... 27 0 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................CCACACTGGGTCGAGGCTCACAAT..................................................................... 24 1 4 0.25 1 1 0 0 0 0 0
..................................................................................................................................................................ACTGGGTCGAGGCTCACAAT..................................................................... 20 0 4 0.25 1 0 1 0 0 0 0
..............................................................................................................................................................TCACACTGGGTCGAGGCTCACAATAC................................................................... 26 0 4 0.25 1 0 0 1 0 0 0
........................................................................................................................................................CCCACGTCACACTGGGTCGAGGCTCACA....................................................................... 28 0 5 0.20 1 0 1 0 0 0 0
...................................................................................................................................GTTGGCCGGTACCGTGTAT..................................................................................................... 19 0 5 0.20 1 0 1 0 0 0 0
...............................................................................................................................................................CACACTGGGTCGAGGCTCACA....................................................................... 21 0 5 0.20 1 1 0 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCTCAC........................................................................ 26 0 5 0.20 1 0 1 0 0 0 0
...........................................................................................................................................................ACGTCACACTGGGTCGAGGCT........................................................................... 21 0 5 0.20 1 0 1 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCTC.......................................................................... 24 0 5 0.20 1 1 0 0 0 0 0
.........................................................................................................................................................CCACGTCACACTGGGTCGAGGCTCATC....................................................................... 27 2 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................................................GTCACACTAGGTCGAGGCTCACAAT..................................................................... 25 1 5 0.20 1 1 0 0 0 0 0
..................AGAGGGGGGCACTGTTACT...................................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 1
.........................................................................................................................................................CCACGTCACGCTGGGTCGAGGCTCACGA...................................................................... 28 2 11 0.09 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:2425976-2426226 - dmo_1397 TTGGCCATAGGTGTCTCGCCGCCGCCCGTGACAATGATCTCACTATTACACGCCAAGTGTCATATACAGGAGCGGGATTGTGGGGAATCCGCGTGGCTGGAGGCAAGATAGGCTGGGGTTAGCTTTCGAGACAACCGGCCATGGCACATAGTGGGTGCAGTGTGACCCAGCTCCGAGTGTTATGTGTGTTATGCACCATAGCTGAGACGACACACTGGTTGGTTGTCGGTGGCGAGGGCGGCCTATCGGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TTGGCCATAGGTGTCTCGCCGCCGCCCGTGACAATGATCTCACTATTACACGCCAAGTGTCATATACAGGAGCGGGATTGTGGGGAATCCGCGTGGCTGGAGGCAAGATAGGCTGGGGTTAGCTTTCGAGACAACCGGCCATGGCACATAGTGGGTGCAGTGTGACCCAGCTCCGAGTGTTATGTGTGTTATGCACCATAGCTGAGACGACACACTGGTTGGTTGTCGGTGGCGAGGGCGGCCTATCGGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................GCTTTCGAGACAACCGGCCATGG...........................................................................................................2342.50101000000
...........................................................................................................................................................................TCCGAGTGTTATGTGTGTTATGCAC.......................................................2512.002100010
.............................................................................................................................................................................CGAGTGTTATGTGTGTTATGCACC......................................................2411.001100000
....................................................................................................................................................................................................CATAGCTGAGACGACACACTGGTTGG.............................2611.001100000
...........................................................................................................................................................................TCCGAGTGTTATGTGTGTTATG..........................................................2211.001000001
...........................................................................................................................................................................TCCGAGTGTTATGTGTGTTATGCACCC.....................................................2711.001100000
.........................................................................................................................GCTTTCGAGACAACCGGCCATGGC..........................................................................................................2441.004300010
.............................................................................................................................................................................CGAGTGTTATGTGTGTTATGC.........................................................2111.001000001
...........................................................................................................................................................................TCCGAGTGTTATGTGTGT..............................................................1811.001100000
........................................................................................................................................................................................................GCTGAGACGACACACTGGTTGGTTG..........................2511.001100000
............................................................................................................................................................................CCGAGTGTTATGTGTGTTATGCACCA.....................................................2611.001100000
............................................................................................................................................................................CCGAGTGTTATGTGTGTTATGCA........................................................2311.001100000
.............................................................................................................................................................................................TATGCACCATAGCTGAGACGACA.......................................2320.501100000
.........................................................................................................................GCTTTCGAGACAACCGGCCATGGCACA.......................................................................................................2740.502200000
.........................................................................................................................GCTTTCGAGACAACCGGCCATGGCA.........................................................................................................2540.251100000
............................................................................................................................TTCGAGACAACCGGCCATGGCAC........................................................................................................2340.251100000
.........................................................................................................................GCTTTCGAGACAACCGGCCATGGCAC........................................................................................................2640.251100000
.........................................................................................................................GCTTTCGAGACAACCGGCCAC.............................................................................................................2140.251000010
.......................................................................................................................TAGCTTTCGAGACAACCGG.................................................................................................................1940.251100000
.............................................................................................................................TCGAGACAACCGGCCATGGCA.........................................................................................................2150.201100000

Generated: 05/18/2015 at 12:23 AM