dmo_1386

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGCGACAACCAGTCTCCATGCAACACAAACAGCAGCAACAGCAACAGCAGCAACAGCGTCAGCTTCAGCAGCAACAGCAGCAACAGCATCAGCAGCAACAGCAGCAGCAGCAGCAGCAGTTGCAGCAACTGATTCATCGGCATTCATGCAAGAAACGTATAATAATTCATTTGAGAAGGGAAATTTCGCGTTTCTTTGGAGTGGAAGCGAGTACTGAAGCAACAGACTTTGCCATCTGGTATGGACGCCAT ************************************************...........(((...((.((....)).))...)))(((((..((..((((.((.((....)).)).))))..))..)))))......(((....)))(((((((((..(((..(((......))).....)))..))))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V056 head
.........................................................................................................................................................AACTTATAATAATTCTTTTG..............................................................................	20	2	6	0.33	2	2	0
....................................................................................AGCATCAGCAGCAACAGCA....................................................................................................................................................	19	0	20	0.10	2	2	0
......................................................................................................................................................AGCAAGGTATAATCATTCAT.................................................................................	20	3	11	0.09	1	0	1
...................................................................................CAGCATCAGCAGCAACAGCAGC..................................................................................................................................................	22	0	13	0.08	1	1	0
.........................................................................................................AGCAGCAGCAGCAGTTGCA...............................................................................................................................	19	0	20	0.05	1	1	0

TCGCTGTTGGTCAGAGGTACGTTGTGTTTGTCGTCGTTGTCGTTGTCGTCGTTGTCGCAGTCGAAGTCGTCGTTGTCGTCGTTGTCGTAGTCGTCGTTGTCGTCGTCGTCGTCGTCGTCAACGTCGTTGACTAAGTAGCCGTAAGTACGTTCTTTGCATATTATTAAGTAAACTCTTCCCTTTAAAGCGCAAAGAAACCTCACCTTCGCTCATGACTTCGTTGTCTGAAACGGTAGACCATACCTGCGGTA ************************************************...........(((...((.((....)).))...)))(((((..((..((((.((.((....)).)).))))..))..)))))......(((....)))(((((((((..(((..(((......))).....)))..))))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
.......................................................................................................................................TAGCCGTAAGTACGTTCTTTG...............................................................................................	21	0	1	1.00	1	1	0
.........................................................................................................................................................TTGAATATTATTAAGAAAAC..............................................................................	20	2	6	0.50	3	1	2
.....................TTGTGTTTCTCGTCGTTGTC..................................................................................................................................................................................................................	20	1	6	0.17	1	0	1
.....................................................................................................................................................TTCTTTCTATATTAGTAAGTA.................................................................................	21	3	18	0.06	1	1	0
..........................................................................................................................................................TGAATATTATTAAGAAAAC..............................................................................	19	2	20	0.05	1	0	1
........................................................................................................................................................ATTGAATATTATTAAGAAAAC..............................................................................	21	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6498:1835148-1835398 -	dmo_1386	AGCG---------------ACAACCA-GT------------CTCCAT---GCAACACAAACAGCAGCAACAGCA--------ACAGCAGCAACAGCGTCAGCT-TCAGCAGCAAC------------------AGCA------------------------GCAACAGCATCAGCAGCAACA---------GCAG---------------------------------CAG------------CAGC------AGCAGCA---------GTTGCAGCAACTGATTCATCGGCAT-----------------------------------------------------------------------------------------------------------------------------------------------TCATGCAAGAAACGTATAATA------ATTCATT-----T----------------------------------------------------GAGAAGGGAAATTTCGCGTTTCTTTGGAGTGGAAGCGAGTACTGAAGC---------AACAGACTTTGCCATCTGGTATGGACGCC--AT
droVir3	scaffold_12970:5357250-5357456 -		CATC-----------------ATCCT-------------------CCGCAACAAC---------------AGCA--------ACAGCAAC-------------------AACAACAGC---------------AGCA------------------------CCAGCAGCAGCAGCAGCA------------ACAA---------------------------------CAACAGCAACAACATCACC------ACCAGCAACATCATCAGC---ATC---ATCACGAGAAGA----------------------------------------------------------------------AGCACAA----------GAAGTAAGTAAAAGTCTAACATAATCCTTGGAGCGCAGTACTGAATAATGATGCTTT-TTCAG-------------------------------------------------------------------------------------------------------------------------------------GA---------AACTGAATGCCAGCAT---------------TT
droGri2	scaffold_15245:5561173-5561425 -		AGCA---------------ACAACAG-------------------CAGCAACAAC---------------AGCA--------G----------------------------CA---GCAGCAACAGCAGC---AGCA------------------------ACAACAGCAGCAG---CAGCA---------ACAGC------AGCAGCAACAGCAACAGCAGCAACAG------CAGCAG---CAAC------AGCAGCA---ACATCAGC---AGC---ACCAACAGCAGC----------------------------------------------------------------------AGCAGCA----------G---------------------------------------------------------AGCTGCGAAGAG--GATAATG------AA---TT-----T-----------------------------------GA-GCAGTTTA--TATTGAATCGCACCACATCGGAGAGTAACATGCTCGAATCGAGTATTTA--C---------AGCGAGTTGCAATT--TGGTGCGAATGC-----
droWil2	scf2_1100000004958:412080-412302 -		AGTT---------------ACG--------------------------------------------------------------------CAAATGATTAATACTCCACGCATAC------------------AGCAATCACAGATGAACACAGTCCATAACTTGCACTCTCAGCCGCAACA---------G------------------------------------CAGACACCACAAATTTTAC------AACAACA---------------------------ACATTAT-----------------------------------------------------------------------------------------------------------------------------------------------TCGTATAAAAAGCGCTTAAGT------AAGTATA-----T----------------------------------------------------GAAGCGCGAAGTATCAAGTTTCTTTGGTGTGGAACTCAGCACTGAGAA---------TGAAGATTTTTCTCTTTGGTATGGTCGGC--AC
dp5	XL_group3b:102214-102415 +		TGCA---------------GCAGCAT-------------------CAGCAGCAGC---------------AACA--------G----------------------------CA---GCAACAACAGCAGC---AACA------------------------ACAGCAGCAACAACAGCA------------GCAAC------AACAGCAGCAACAACAGCAGCCACAG------CAGCAA---CAGCAGGC--CAC------------------------AGCGGCGGC-------------------------------------------------------------------------AGCAG-----------------------------------------------------------------C--GAGCGTGC-ACAAGTTCATCGACGAACTGACAAAGT------------------------------------------------------------------CCACATCGG------------TGGTCAGCA-----------------------------GCAATGGAACAACAGAGTC-AGC
droPer2	scaffold_94:127571-127826 +		AGCA---------------GTGACAA-TA------------GCTGTA---GCGACTTAAG---------------------------------------------------CAGAGGCAACACCAGCAGCAGCGACA------------------------ACGATATCAGCAG---------------CAGCGACCTAAGAAGAGGCAACACCAGCAGCAGAAACAGCGGTATCAGCAGCAGCGAC------TTCAGCGGC------------------AGCAGTAACAAC----------------------------------------------------------------------AACAAC------------------------------------------------------------------------------AGAAGCAGAATT------AATCAGC-----T----------------------------------------------------CAGTCTC-ATATCTCAAATTGTTTTTAAGTCTAATCAAGTACAAAAAAAAACGAGGGGGAACGTTGTGAGT--TGCTGCGGACACC----
droAna3	scaffold_12916:14212774-14213016 -		AATC-----------------AGCAG-------------------CAGCAACA------G---C------AGCACCAACTATACCGGAGCCAGATGGTCGCAAATCCAAGGATGC------------------AGCA------------------------CATGCACCACCAGACGCAGCA---------GCAC---------------------------------CAATCCATGCAGGTCCTGC------CCCAGCCCC------------------AGCTTCATCATCTG-----------------------------------------------------------------------------------------------------------------------------------------------TCGTGCAAGAAACGGATTGGG------ATCTATC-----T----------------------------------------------------GAAGAGAGCTACCGCCCAGTTCTTTGGAGTAGAGCCAAGCACGGAGGC---------GGCCGATTGTGCCCTGTGGCAGGGGCGTC--AC
droBip1	scf7180000396730:1815662-1815893 +		G----------------CAACAGCAG-------------------CAGCAGCAAC---------------AGCA--------A----------------------------CTGC------------------AGCA------------------------ACAACAGCAGCAGCAACAGCAACTGCAGCAACAGG------AGGAGCATCTTCAGCAGCAGAGGCAG------TATCAG---ATGT---ACTTGCAACACC------AGG---AGC---AGCAGCAGCAAC----------------------------------------------------------------------AGCAGC---------------------------------------------------------------------------TGGAACCTCCTAATG------GGTTGGT---CAA-----------------------------------G----------------AGGAACAATTACAAGCCAGTTC--CGGCGATTGCCACGCCAGTGAAGC---------AGCAGCCC----CATCTG-------CCAC--CT
droKik1	scf7180000302472:2958492-2958720 +		C----------------AA----------------------------------------C---C------AGCACCAGATGTACCGCAGCCAGATGGTTAGCAATCCGAGGCTGC------------------AACA------------------------CATCCATCACCAGACGCAGCA---------GCAC---------------------------------CAGTCGCTGCAGGTTCTCC------CACAGCCGC------------------AGCTGCATCATCTG-----------------------------------------------------------------------------------------------------------------------------------------------TCGTGCAAGAAACGACTCGGC------ATCTATC-----T----------------------------------------------------ACGCCGCACCACCTCACAGTTTTTCGGCGTGGAACCGAGCACAGAGGC---------GGTGGACTGTGCCCTCTGGCAAGGACGTC--AT
droFic1	scf7180000453838:617017-617261 -		CCGTGCCACCTGGATCGAA----------------------------------------C---C------AACACCAGATGTACCGCAGTCAGATGGCCAGCAATCCGCGAATGC------------------AGCA------------------------CATGCACCACCAGACGCAGCA---------GCAC---------------------------------CAGTCGCTCCAGGTGCTTC------CGCAACCAC------------------AGACGCACCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGGATTGGC------ATCTACA-----T----------------------------------------------------GAAGCGCACCACCTCTCAGTTCTTCGGCGTAGAGCCGAGTACGGAAGC---------GGCGGATTGTGTGCTGTGGCAAGGACGTC--AT
droEle1	scf7180000491087:142708-142988 +		AGCA---------------ACAGCAA-------------------CCAT--------------------------------TCCCGCAGCAG-------------------CA---ACAATAGGAGT------AGCA------------------------ACAACAACAGCAACAGCAGCA---------ACATC------AGTTGCATTTACAAATGCAAAGACTG------CAGCAG---TGGT---CAAGACGACAGC------------------AGCAGCATCAGTTG-----------------------------------------------------------------------------------------------------------------------------------------------CACCGCAA---CCCGATAAAG------AAACAAC-----GGCGGAGATCAACGCCAGCGAAATAATAGTGCATCTGGAGCAGAGTGCG----GTCACTGGGAATCTGCTGCATATTTGGGGCGGCAACCTGGCCACACGC---------TACAA---TCTCAATATGGTGAGGACGGC--GA
droRho1	scf7180000777362:8874-9101 -		AACC------------------------------------------------------------------AACACCAGATGTACCGCAGCCAGATAGCCAGCAATCCTCGACTGC------------------AGCA------------------------CATCCACCACCAGACGCAGCA---------GCAT---------------------------------CAGTCACTGCAGGTGCTCC------CACAACCGC------------------AGATGCACCACCTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGGATTGGC------ATCTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAATTCTTTGGCGTGGAGCCGAGTACCGAGGT---------AGCGGATTGCGCCCTGTGGCAAGGACGTC--AT
droBia1	scf7180000302041:134790-135025 +		AGCA---------------GCAACTG-GT------------GCAACA---GCAAC------------------------------------------------------AAGTGCAGCAGCTCCAGCAGCAGCAACA------------------------ACTGCATCAGCAG---------------CAGCAAC------TGGAGCTCCTGCAGCAACAG------CAGCGACTCCAGCTACAAC------AGCAGCT---------GA---AGCAACAGAAGCAAC-------------------------------------------------------------------------TGCAG-----------------------------------------------------------------CTTG-TGCTGGAAAAAGTGCGCCAGCAGAGGGAGATACACCG--T----------------------------------------------------ATGCAACAGGTCCAGGTAGATCTGGAGCGTCAAATTCGCCAG----------------------------------GAAGAGGAGC--AG
droTak1	scf7180000415381:794792-795049 -		CGCACAAGCGAGCCTCGAG-TCACAGCCTGGAGGAGGAGCACCTGCA---GCAGCACAGG---------------------------------------------------GAGCAGCAGCACCAGCAGCAGCAACA------------------------TCTTCAGCAGCAG---------------CAGCAAC------AGCAACACCTCCATCAGCAA-------------------TTTG---------------------------GCAGCAGCCAGGCGGTCTACACCAATGGCAGTGGCAGCAAGATGGCTCTATTGAGCAGTGCAGCTGCCAATGTGGCTCTGGCCCAACAGCAACAGCAGCAGCAGATT----------------------------------------------------------CACCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GGATCTATACACCAACT
droEug1	scf7180000409524:879527-879700 +		ATAC---------------ACAACTG-------------------CA---GCAACAAAAT--------------------------------------CAGCA-------------ACAGCAGCAGCAGCAGCATCA------------------------TCAACAACAACAGCAGCAGCA---------GCAAC------AGCAGCAACAGCAGCAGCAGCAACAG------CAGCAG---CAGC------AGCAGCAAC---A---GC---AACAACAGTTGCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCAACAAAATGAT------ATT---------------------------------------------------------------------------------TTATTACGAGAGGAGA-------------------------------------------------------
dm3	chr2L:10371297-10371525 -		C----------------AA----------------------------------------T---C------AGCACCAGCTGTACCGCAGCCAGATGGCCAGCAATCCGCGTCTGC------------------AGCA------------------------CATCCATCACCAGACGCAGCA---------GCAC---------------------------------CAGTCGCTCCAGGTGCTGC------CGCAACCGC------------------AGAACCATCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGCATTGGC------ATGTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAGTTCTTCGGCGTGGAGCCCAGCACGGAGGC---------GGCGGACTGTGCCCTGTGGCAAGGACGTC--AT
droSim2	2l:10049840-10050068 -		C----------------AA----------------------------------------T---C------AGCACCAGCTGTACCGCAGCCAGATGGCCAGCAATCCACGGCTGC------------------AGCA------------------------CATCCACCATCAGACGCAGCA---------GCAC---------------------------------CAGTCGCTGCAGGTGCTGC------CCCAGCCGC------------------AGAACCATCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAACGCATTGGC------ATGTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAGTTCTTCGGCGTGGAGCCCAGCACGGAGGC---------GGCGGACTGTGCCCTGTGGCAAGGACGTC--AT
droSec2	scaffold_3:5799187-5799415 -		C----------------AA----------------------------------------T---C------AGCACCAGCTGTACCGCAGCCAGATGGCCAGTAATCCGCGGCTGC------------------AGCA------------------------CATCCACCACCAGACGCAGCA---------GCAT---------------------------------CAGTCGCTCCAGGTGCTGC------CCCAGCCGC------------------AGAACCATCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGCATTGGC------ATGTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAGTTCTTCGGCGTGGAGCCCAGCACGGAGGC---------GGCGGACTGTGCCCTGTGGCAAGGACGTC--AT
droYak3	2L:13051215-13051443 -		C----------------AA----------------------------------------T---C------AGCACCAGCTGTACCGCAGCCAGATGGCCAGCAATCCGCGGCTGC------------------AGCA------------------------CATCCACCACCAGACGCAGCA---------GCAC---------------------------------CAGTCGCTTCAGGTGCTGC------CCCAAGCGC------------------AGAACCACCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGCATCGGC------ATGTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAGTTCTTCGGCGTGGAGCCCAGCACGGAGGC---------GGCGGACTGTGCCCTGTGGCAGGGACGTC--AT
droEre2	scaffold_4929:10979995-10980219 -		C---------------------------------------------------------------------AGCACCAGCTGTACCGCAGCCAGATGGCCAGCAATCCGCGGCTGC------------------AGCA------------------------CATCCACCACCAGACGCAGCA---------GCAC---------------------------------CAATCGCTCCAGGTGCTGC------CCCAACCGC------------------AGAACCACCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGCATTGGC------ATGTACA-----T----------------------------------------------------GAGGCGCACCACCTCACAATTCTTCGGCGTGGAGCCCAGCACGGAGGC---------GGCGGACTGTGCTCTGTGGCAAGGACGTC--AT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AGCG---------------ACAACCA-GT------------CTCCAT---GCAACACAAACAGCAGCAACAGCA--------ACAGCAGCAACAGCGTCAGCT-TCAGCAGCAAC------------------AGCA------------------------GCAACAGCATCAGCAGCAACA---------GCAG---------------------------------CAG------------CAGC------AGCAGCA---------GTTGCAGCAACTGATTCATCGGCAT-----------------------------------------------------------------------------------------------------------------------------------------------TCATGCAAGAAACGTATAATA------ATTCATT-----T----------------------------------------------------GAGAAGGGAAATTTCGCGTTTCTTTGGAGTGGAAGCGAGTACTGAAGC---------AACAGACTTTGCCATCTGGTATGGACGCC--AT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................AGCATCAGCAGCAACA---------GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	2	0	0	0	0	0
.....................................................................................................................................................................CAGCATCAGCAGCAACA---------GCAG---------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................AG------------CAGC------AGCAGCA---------GTTGCA........................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droVir3

CATC-----------------ATCCT-------------------CCGCAACAAC---------------AGCA--------ACAGCAAC-------------------AACAACAGC---------------AGCA------------------------CCAGCAGCAGCAGCAGCA------------ACAA---------------------------------CAACAGCAACAACATCACC------ACCAGCAACATCATCAGC---ATC---ATCACGAGAAGA----------------------------------------------------------------------AGCACAA----------GAAGTAAGTAAAAGTCTAACATAATCCTTGGAGCGCAGTACTGAATAATGATGCTTT-TTCAG-------------------------------------------------------------------------------------------------------------------------------------GA---------AACTGAATGCCAGCAT---------------TT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................ATCAGC---ATC---ATCACGAGAAGA----------------------------------------------------------------------A................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................ATCATCAGC---ATC---ATCACGAGAAGA----------------------------------------------------------------------AGC..............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................GCAAC-------------------AACAACAGC---------------AGCA------------------------CCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CGCAACAAC---------------AGCA--------ACAGCAAC-------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CAGCAAC-------------------AACAACAGC---------------AGCA------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GCAGCAGCA------------ACAA---------------------------------CAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................GC---------------AGCA------------------------CCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................ACAGC---------------AGCA------------------------CCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AGCA------------------------CCAGCAGCAGCAGCAGCA------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AGC---------------AGCA------------------------CCAGCAGCAGCAGCAGCA------------............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................GC---------------AGCA------------------------CCAGCAGCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GCAGCAGCA------------ACAA---------------------------------CAACAGCAACA............................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................CAACAAC---------------AGCA--------ACAGCAAC-------------------AACAACAGC---------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AGCAGCAGCA------------ACAA---------------------------------CAACAGCAACA............................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................C---------------AGCA--------ACAGCAAC-------------------AACAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CA------------------------CCAGCAGCAGCAGCAGCA------------ACAA---------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................CA--------ACAGCAAC-------------------AACAACAGC---------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CCAGCAGCAGCAGCAGCA------------ACAA---------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AGCA---------------ACAACAG-------------------CAGCAACAAC---------------AGCA--------G----------------------------CA---GCAGCAACAGCAGC---AGCA------------------------ACAACAGCAGCAG---CAGCA---------ACAGC------AGCAGCAACAGCAACAGCAGCAACAG------CAGCAG---CAAC------AGCAGCA---ACATCAGC---AGC---ACCAACAGCAGC----------------------------------------------------------------------AGCAGCA----------G---------------------------------------------------------AGCTGCGAAGAG--GATAATG------AA---TT-----T-----------------------------------GA-GCAGTTTA--TATTGAATCGCACCACATCGGAGAGTAACATGCTCGAATCGAGTATTTA--C---------AGCGAGTTGCAATT--TGGTGCGAATGC-----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................................................................................................ACAG------CAGCAG---CAAC------AGCAGCA---ACATC...............................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	1	0
.........................G-------------------CAGCAACAAC---------------AGCA--------G----------------------------CA---GCAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0
..................................................................................G----------------------------CA---GCAGCAACAGCAGC---AGCA------------------------ACAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0
................................................................................................................................................................................................................................ACAG------CAGCAG---CAAC------AGCAGCA---ACA.................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1

droWil2

AGTT---------------ACG--------------------------------------------------------------------CAAATGATTAATACTCCACGCATAC------------------AGCAATCACAGATGAACACAGTCCATAACTTGCACTCTCAGCCGCAACA---------G------------------------------------CAGACACCACAAATTTTAC------AACAACA---------------------------ACATTAT-----------------------------------------------------------------------------------------------------------------------------------------------TCGTATAAAAAGCGCTTAAGT------AAGTATA-----T----------------------------------------------------GAAGCGCGAAGTATCAAGTTTCTTTGGTGTGGAACTCAGCACTGAGAA---------TGAAGATTTTTCTCTTTGGTATGGTCGGC--AC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAACTCAGCACTGAGAA---------TGAAG............................	25	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCTTTGGTGTGGAACT......................................................	20	1	1.00	1	1	0	0	0	0

dp5

TGCA---------------GCAGCAT-------------------CAGCAGCAGC---------------AACA--------G----------------------------CA---GCAACAACAGCAGC---AACA------------------------ACAGCAGCAACAACAGCA------------GCAAC------AACAGCAGCAACAACAGCAGCCACAG------CAGCAA---CAGCAGGC--CAC------------------------AGCGGCGGC-------------------------------------------------------------------------AGCAG-----------------------------------------------------------------C--GAGCGTGC-ACAAGTTCATCGACGAACTGACAAAGT------------------------------------------------------------------CCACATCGG------------TGGTCAGCA-----------------------------GCAATGGAACAACAGAGTC-AGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................CAA---CAGCAGGC--CAC------------------------AGCGGCGGC-------------------------------------------------------------------------.................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGT------------------------------------------------------------------CCACATCGG------------TGGTC........................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGACGAACTGACAAAGT------------------------------------------------------------------..................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCGACGAACTGACAAAGT------------------------------------------------------------------CCACA.............................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GCAA---CAGCAGGC--CAC------------------------AGCGGC.............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CAGCAACAACAGCAGCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................AGCA------------GCAAC------AACAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................AGCAGCAACAACAGCA------------GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................AGCAGC---AACA------------------------ACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................GCA------------GCAAC------AACAGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................G----------------------------CA---GCAACAACAGCAGC---AAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................GCAGCAACAACAGCA------------GCAAC------.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................GCAGC---AACA------------------------ACAGCAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CAACAGCA------------GCAAC------AACAGCAGCAACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................CAACAGCAGC---AACA------------------------ACAGCAGCAACAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
......................................................C---------------AACA--------G----------------------------CA---GCAACAACAGCAGC---AACA------------------------AC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................CA------------------------ACAGCAGCAACAACAGCA------------GCAAC------AAC..............................................................................................................................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................ACA--------G----------------------------CA---GCAACAACAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AC------AACAGCAGCAACAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................CAACAGCAGC---AACA------------------------ACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.......................................................................ACA--------G----------------------------CA---GCAACAACAGCAGC---AAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................ACAACAGCAGC---AACA------------------------ACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAGCAGCAACAACAGCA------------GCAAC------A................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................CAACAGCAGC---AACA------------------------ACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................ACAGCAGC---AACA------------------------ACAGCAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................C------AACAGCAGCAACAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................AGCAACAACAGCA------------GCAAC------AACA.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................ACAGCAGCAACAACAGCA------------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACAGCA------------GCAAC------AACAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CAACAGCA------------GCAAC------AACAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................CA------------------------ACAGCAGCAACAACAGCA------------GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................AGCAGCAGC---------------AACA--------G----------------------------CA---GCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................ACAGCAGCAACAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................A------------GCAAC------AACAGCAGCAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CA------------GCAAC------AACAGCAGCAACAA...................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................GCAGCAGC---------------AACA--------G----------------------------CA---GCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................ACAGCAGCAACAACAGCA------------GCAAC------.................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.................................................AGCAGC---------------AACA--------G----------------------------CA---GCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................CA------------------------ACAGCAGCAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACAGCA------------GCAAC------AACAGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................ACAGCAGC---AACA------------------------ACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACAGCA------------GCAAC------AACAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CAGCAACAACAGCA------------GCAAC------AA...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAGCA------------GCAAC------AACAGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................ACAGCAGCAACAACAGCA------------GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................ACA--------G----------------------------CA---GCAACAACAGCAGC---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ACAACAGCA------------GCAAC------AACAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................CA---GCAACAACAGCAGC---AACA------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CAACAGCA------------GCAAC------AACAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................CA--------G----------------------------CA---GCAACAACAGCAGC---AACA------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................ACAGCAGC---AACA------------------------ACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................A---GCAACAACAGCAGC---AACA------------------------ACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................ACAGCAGCAACAACAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................AGCAGCAGC---------------AACA--------G----------------------------CA---GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................AGC---AACA------------------------ACAGCAGCAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................C---------------AACA--------G----------------------------CA---GCAACAACAGCAGC---A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................ACA------------------------ACAGCAGCAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................CAGC---AACA------------------------ACAGCAGCAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCA---------------GTGACAA-TA------------GCTGTA---GCGACTTAAG---------------------------------------------------CAGAGGCAACACCAGCAGCAGCGACA------------------------ACGATATCAGCAG---------------CAGCGACCTAAGAAGAGGCAACACCAGCAGCAGAAACAGCGGTATCAGCAGCAGCGAC------TTCAGCGGC------------------AGCAGTAACAAC----------------------------------------------------------------------AACAAC------------------------------------------------------------------------------AGAAGCAGAATT------AATCAGC-----T----------------------------------------------------CAGTCTC-ATATCTCAAATTGTTTTTAAGTCTAATCAAGTACAAAAAAAAACGAGGGGGAACGTTGTGAGT--TGCTGCGGACACC----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGT--TGCTGCGGAC.......	19	20	0.30	6	0	6	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAGGGGGAACGTTGTGA.....................	21	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGGGGGAACGTTGTGA.....................	20	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAGGGGGAACGTTGTGAGT--T................	24	20	0.05	1	0	1	0	0	0	0

droAna3

AATC-----------------AGCAG-------------------CAGCAACA------G---C------AGCACCAACTATACCGGAGCCAGATGGTCGCAAATCCAAGGATGC------------------AGCA------------------------CATGCACCACCAGACGCAGCA---------GCAC---------------------------------CAATCCATGCAGGTCCTGC------CCCAGCCCC------------------AGCTTCATCATCTG-----------------------------------------------------------------------------------------------------------------------------------------------TCGTGCAAGAAACGGATTGGG------ATCTATC-----T----------------------------------------------------GAAGAGAGCTACCGCCCAGTTCTTTGGAGTAGAGCCAAGCACGGAGGC---------GGCCGATTGTGCCCTGTGGCAGGGGCGTC--AC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCTACCGCCCAGTTCTTTGGAGT............................................................	27	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGTTCTTTGGAGTAG..........................................................	19	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTTCTTTGGAGTAGAGCCAAGC..................................................	26	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................CATCATCTG-----------------------------------------------------------------------------------------------------------------------------------------------TCGTGCAAGAAACG........................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.........................G-------------------CAGCAACA------G---C------AGCACCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0
...C-----------------AGCAG-------------------CAGCAACA------G---C------AGCACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0
.ATC-----------------AGCAG-------------------CAGCAACA------G---C------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0

droBip1

G----------------CAACAGCAG-------------------CAGCAGCAAC---------------AGCA--------A----------------------------CTGC------------------AGCA------------------------ACAACAGCAGCAGCAACAGCAACTGCAGCAACAGG------AGGAGCATCTTCAGCAGCAGAGGCAG------TATCAG---ATGT---ACTTGCAACACC------AGG---AGC---AGCAGCAGCAAC----------------------------------------------------------------------AGCAGC---------------------------------------------------------------------------TGGAACCTCCTAATG------GGTTGGT---CAA-----------------------------------G----------------AGGAACAATTACAAGCCAGTTC--CGGCGATTGCCACGCCAGTGAAGC---------AGCAGCCC----CATCTG-------CCAC--CT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

C----------------AA----------------------------------------C---C------AGCACCAGATGTACCGCAGCCAGATGGTTAGCAATCCGAGGCTGC------------------AACA------------------------CATCCATCACCAGACGCAGCA---------GCAC---------------------------------CAGTCGCTGCAGGTTCTCC------CACAGCCGC------------------AGCTGCATCATCTG-----------------------------------------------------------------------------------------------------------------------------------------------TCGTGCAAGAAACGACTCGGC------ATCTATC-----T----------------------------------------------------ACGCCGCACCACCTCACAGTTTTTCGGCGTGGAACCGAGCACAGAGGC---------GGTGGACTGTGCCCTCTGGCAAGGACGTC--AT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCGTGCCACCTGGATCGAA----------------------------------------C---C------AACACCAGATGTACCGCAGTCAGATGGCCAGCAATCCGCGAATGC------------------AGCA------------------------CATGCACCACCAGACGCAGCA---------GCAC---------------------------------CAGTCGCTCCAGGTGCTTC------CGCAACCAC------------------AGACGCACCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGGATTGGC------ATCTACA-----T----------------------------------------------------GAAGCGCACCACCTCTCAGTTCTTCGGCGTAGAGCCGAGTACGGAAGC---------GGCGGATTGTGTGCTGTGGCAAGGACGTC--AT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCA---------------ACAGCAA-------------------CCAT--------------------------------TCCCGCAGCAG-------------------CA---ACAATAGGAGT------AGCA------------------------ACAACAACAGCAACAGCAGCA---------ACATC------AGTTGCATTTACAAATGCAAAGACTG------CAGCAG---TGGT---CAAGACGACAGC------------------AGCAGCATCAGTTG-----------------------------------------------------------------------------------------------------------------------------------------------CACCGCAA---CCCGATAAAG------AAACAAC-----GGCGGAGATCAACGCCAGCGAAATAATAGTGCATCTGGAGCAGAGTGCG----GTCACTGGGAATCTGCTGCATATTTGGGGCGGCAACCTGGCCACACGC---------TACAA---TCTCAATATGGTGAGGACGGC--GA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACC------------------------------------------------------------------AACACCAGATGTACCGCAGCCAGATAGCCAGCAATCCTCGACTGC------------------AGCA------------------------CATCCACCACCAGACGCAGCA---------GCAT---------------------------------CAGTCACTGCAGGTGCTCC------CACAACCGC------------------AGATGCACCACCTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGGATTGGC------ATCTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAATTCTTTGGCGTGGAGCCGAGTACCGAGGT---------AGCGGATTGCGCCCTGTGGCAAGGACGTC--AT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCA---------------GCAACTG-GT------------GCAACA---GCAAC------------------------------------------------------AAGTGCAGCAGCTCCAGCAGCAGCAACA------------------------ACTGCATCAGCAG---------------CAGCAAC------TGGAGCTCCTGCAGCAACAG------CAGCGACTCCAGCTACAAC------AGCAGCT---------GA---AGCAACAGAAGCAAC-------------------------------------------------------------------------TGCAG-----------------------------------------------------------------CTTG-TGCTGGAAAAAGTGCGCCAGCAGAGGGAGATACACCG--T----------------------------------------------------ATGCAACAGGTCCAGGTAGATCTGGAGCGTCAAATTCGCCAG----------------------------------GAAGAGGAGC--AG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGCACAAGCGAGCCTCGAG-TCACAGCCTGGAGGAGGAGCACCTGCA---GCAGCACAGG---------------------------------------------------GAGCAGCAGCACCAGCAGCAGCAACA------------------------TCTTCAGCAGCAG---------------CAGCAAC------AGCAACACCTCCATCAGCAA-------------------TTTG---------------------------GCAGCAGCCAGGCGGTCTACACCAATGGCAGTGGCAGCAAGATGGCTCTATTGAGCAGTGCAGCTGCCAATGTGGCTCTGGCCCAACAGCAACAGCAGCAGCAGATT----------------------------------------------------------CACCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GGATCTATACACCAACT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATAC---------------ACAACTG-------------------CA---GCAACAAAAT--------------------------------------CAGCA-------------ACAGCAGCAGCAGCAGCATCA------------------------TCAACAACAACAGCAGCAGCA---------GCAAC------AGCAGCAACAGCAGCAGCAGCAACAG------CAGCAG---CAGC------AGCAGCAAC---A---GC---AACAACAGTTGCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCAACAAAATGAT------ATT---------------------------------------------------------------------------------TTATTACGAGAGGAGA-------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

C----------------AA----------------------------------------T---C------AGCACCAGCTGTACCGCAGCCAGATGGCCAGCAATCCGCGTCTGC------------------AGCA------------------------CATCCATCACCAGACGCAGCA---------GCAC---------------------------------CAGTCGCTCCAGGTGCTGC------CGCAACCGC------------------AGAACCATCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGCATTGGC------ATGTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAGTTCTTCGGCGTGGAGCCCAGCACGGAGGC---------GGCGGACTGTGCCCTGTGGCAAGGACGTC--AT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGC------ATGTACA-----T----------------------------------------------------GAGGCGC...................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CCAGACGCAGCA---------GCAC---------------------------------CAGTC..................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................CAC---------------------------------CAGTCGCTCCAGGTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCTGTGGCAAGGACGTC--..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................ACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGC.......................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGC------ATGTACA-----T----------------------------------------------------GAGGC.....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGC------ATGTACA-----T----------------------------------------------------GAGGCG....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAGTTC....................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCACCACCTCGCAGTTCTTCGGC..............................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GCA---------GCAC---------------------------------CAGTCGCTCCAGGT.........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TCCGCGTCTGC------------------AGCA------------------------CATCCATCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGC.......................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAAGCGCATTGGC------AT.........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACGGAGGC---------GGCGGCA..........................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

C----------------AA----------------------------------------T---C------AGCACCAGCTGTACCGCAGCCAGATGGCCAGCAATCCACGGCTGC------------------AGCA------------------------CATCCACCATCAGACGCAGCA---------GCAC---------------------------------CAGTCGCTGCAGGTGCTGC------CCCAGCCGC------------------AGAACCATCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAACGCATTGGC------ATGTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAGTTCTTCGGCGTGGAGCCCAGCACGGAGGC---------GGCGGACTGTGCCCTGTGGCAAGGACGTC--AT

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

C----------------AA----------------------------------------T---C------AGCACCAGCTGTACCGCAGCCAGATGGCCAGTAATCCGCGGCTGC------------------AGCA------------------------CATCCACCACCAGACGCAGCA---------GCAT---------------------------------CAGTCGCTCCAGGTGCTGC------CCCAGCCGC------------------AGAACCATCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGCATTGGC------ATGTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAGTTCTTCGGCGTGGAGCCCAGCACGGAGGC---------GGCGGACTGTGCCCTGTGGCAAGGACGTC--AT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................CACCAGACGCAGCA---------GCAT---------------------------------CAGTC..................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1

droYak3

C----------------AA----------------------------------------T---C------AGCACCAGCTGTACCGCAGCCAGATGGCCAGCAATCCGCGGCTGC------------------AGCA------------------------CATCCACCACCAGACGCAGCA---------GCAC---------------------------------CAGTCGCTTCAGGTGCTGC------CCCAAGCGC------------------AGAACCACCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGCATCGGC------ATGTACA-----T----------------------------------------------------GAGGCGCACCACCTCGCAGTTCTTCGGCGTGGAGCCCAGCACGGAGGC---------GGCGGACTGTGCCCTGTGGCAGGGACGTC--AT

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

C---------------------------------------------------------------------AGCACCAGCTGTACCGCAGCCAGATGGCCAGCAATCCGCGGCTGC------------------AGCA------------------------CATCCACCACCAGACGCAGCA---------GCAC---------------------------------CAATCGCTCCAGGTGCTGC------CCCAACCGC------------------AGAACCACCACTTG-----------------------------------------------------------------------------------------------------------------------------------------------TCCTGCAAGAAGCGCATTGGC------ATGTACA-----T----------------------------------------------------GAGGCGCACCACCTCACAATTCTTCGGCGTGGAGCCCAGCACGGAGGC---------GGCGGACTGTGCTCTGTGGCAAGGACGTC--AT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_1386

scaffold_6498:1835198-1835348 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-32.1	-32.1	-31.9