dmo_1382

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	-
AT_rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CGATCCTGATGAAGATTGTCATCTACATAATTCCCAGTTGTTAATGAAGGGTAGGTAAACATATTTATTATATCTTATTATAATTATACCCTGAACACATTGAAAATGGGATTTTTAAAAGGCATATTTTAATGTATCCGCATGTTTTGTTTCTTGTGTAAGCAGATAGACGATAAGAAATATCTTGCTCTTGCTCTTGCTCTTGCTCAAAGAGGTCAGGGGATTTCATAGTCGAGCTCAACTAGAGCTTT ************************************************...((((.........((((((......))))))..))))....(((((..(((((((((((..((((((......))))))...)))).)))......)))).))))).((((((..((.(((((((....))))).))))..)).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V056 head
............................................................................................................................................................TGTAAGCAGATAGACGATAAGAAAT......................................................................	25	0	1	1.00	1	0	1	0
......................CTACATAATTCCCAGTTGTTAAT..............................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0
.......................................................................................................................................ATCCGCATGTTTTGTTTCTTGTGTAAGC........................................................................................	28	0	1	1.00	1	1	0	0
............................................................ATATTTATTATATCTTATG............................................................................................................................................................................	19	1	6	0.67	4	4	0	0
............................................................ATATTTATTATATCTTATGGT..........................................................................................................................................................................	21	2	13	0.08	1	1	0	0
.............................................................TATTTATTATATCTTATG............................................................................................................................................................................	18	1	14	0.07	1	1	0	0
.GATCCTGATGATAATTGT........................................................................................................................................................................................................................................	18	2	19	0.05	1	0	0	1

GCTAGGACTACTTCTAACAGTAGATGTATTAAGGGTCAACAATTACTTCCCATCCATTTGTATAAATAATATAGAATAATATTAATATGGGACTTGTGTAACTTTTACCCTAAAAATTTTCCGTATAAAATTACATAGGCGTACAAAACAAAGAACACATTCGTCTATCTGCTATTCTTTATAGAACGAGAACGAGAACGAGAACGAGTTTCTCCAGTCCCCTAAAGTATCAGCTCGAGTTGATCTCGAAA ************************************************...((((.........((((((......))))))..))))....(((((..(((((((((((..((((((......))))))...)))).)))......)))).))))).((((((..((.(((((((....))))).))))..)).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body
...................................................................................................................................................................................................................CTCCAGTCCCCTAAAGTATCA...................	21	0	1	1.00	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6498:1788529-1788779 -	dmo_1382	CGATCCTGATG---------AAGAT---TGTCATCTACATAATTCCCAGTTGTTAATGAAGGGTAGGTAAACATATT-------------------------------------------------------------------------------------------------------------TATTATATCTTA---------TTATAATTATACCCTGAACACATTGAAAAT------------GGGATTTTTAAAAGGCATATTTTAATGTAT------CCGCATGTT---------TTGTTTCTTGTGTAAGCAGAT---AGA------CGAT---A----------------------------AGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCT------TGCTCTTGCTCTTGC----TC--TTG----------------------------------------C------------TCAAAGAGG--------TCA------------------GGGGATT-TCATAGTCGA---GCTCAACTA---------------GAGCTTT
droVir3	scaffold_12855:3827235-3827394 -		TAACCATATTTGTTTGCCATAAAAACAGCTAAACC-------------------------------------------------------------------------GAATTCATTGAAAACAAAC---------------------------CAT----------------TTGAAAAAAATCATGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCC-------------------AAAAACGGTGT--TCGAAGATAGAAAAAAAAA----------------------------------------------------------------------------ACAGGTTCAAGCGTCGATCATA----------------------------------------------------------------------------------------------------------------A------------AG---AC-----GGAGTTGG-------A----------------TTTC---------------GATCGACTC
droGri2	scaffold_15203:1132851-1132937 -		TTATACCCTGAACCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAAATGCGTGAAAA---------------GGGTATA-----------ATGATTTTGAG------------------T-AAATGTATGTATGTAAGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAAGGA---------------AGCATCT
droWil2	scf2_1100000004962:355126-355324 -		AATTTAAAGGGG----------------------------------------CTGGAAAAAAGAAAGTATACATATG-----------------------------------------------------------------------------------------------------------------------TACATATATTTGAATAATTGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGGAGGGGGTAAGGTTTCAAATTTGAAAAGAACACAATAAAAGTTATATCTTATTTTAGAATAATTTTTTTTTTGTCCAAAAAATAAACTATAAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TTTAAATTT---------------ATGTTTT
dp5	2:7057761-7057910 +		ATACTATTATTATTATA--------------------TAAATG-------------------------------------TAATGAAAAGAGGAGA----------------------------------------------------------------GCTAAATGTAATT--------------------------------------------------------------------------------------------------TAATGAAT---------------------------------------TGAATTAGTGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAAGCCAGAGCGGCAGCTTTTGGTGCTCAGCGGAGAT-----ACTTAGAGACCCCT------TGCTCTCGCTCTCGC----TC--TC--------------------------------------------------------------------------------------------------------------------------------------------GCTC
droPer2	scaffold_12:1614911-1615102 +		TTATTGAATTTAAATAT---------AATTTCATCAACTTTGATCTCAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTATTAAA---------ATA-----TTTTTT-------G----------------------GTATTTTTATAGTCG---TATTTTTCTTTA------CTATTATCT---CCTATAAGAAAGAAGATT-ATT---G--------------------------------ATAAAAGTTTTTCCT------------------------------------------------------------CAA-----------------------------------------------------AGTCTTTCGTACATAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------GAAC--------TAT---CGAAAATTGGCCCAA--------------TCG---GGCTCAACTA---------------AG----G
droAna3	scaffold_12150:2223-2355 -		GATTATGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGTTTTAATCTAT------CTTTATGTACTATTTGTTTTT-----TATTTTTATTATC---TGA------TATA---G----------------------------TTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATC------CCTATCTCCTATTTGTTC------TAC------------------------------------C------------T----TA--TAGGTGCC---------------------TG-TATAT----------------TTAA---------------AATCTAGCT
droBip1	scf7180000395834:6692-6863 -		TATTTTTTATAT-TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATTGTAC----------------------GTAAAGATAAGATTATGTAAAGTAAAGATT--------ATGTAAATGTA------------------AATTATGTACGTAAAG---ATA------AGAT---A----------------------------TGAAA-------------------------------------------------------------------------------------------------------------------------------------------TAGTTTTTTTTTGTATATATC---------------------------------------------------ATAGGTGCATCTT--------------------------------------------------------------------------------------------------------------------------------------------------------TAACATA--------TCAGAATT-----TGGCATT-----------------GA---GCGTTGTTA---------------TTTTTTT
droKik1	scf7180000301590:7670-7782 +		GAAGTTATTGAAATCGG-----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAAACTTGGAATACCTT-CTGTGT------CTGATTGAT---------CTG-----TTCTTTTGTGTTC---TTT------TGTT---A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATA--------TTTGATCT-----TGCTCTTG-------T----------------TCTT---------------GATCTCGCT
droFic1	scf7180000453317:25589-25755 +		ATGTTTTCAACAGAC------------------------------------AAAA----AATAATTTTTAACTTGCG-----------------------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------GACAAATTTTAAAATTT------TCATTTGT-------------------------------------------------------------------------------TC--------AA-----------CCAATCGCTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACCAAC------CTTTAAAAATTTTTTTTCGATTTTTT-----------T--------TCTTATTTTTTTTCTAAGAGA--------GCAGAGTT-----TTCTTTCG-------T----------------TTGG---------------GATCTCGTT
droEle1	scf7180000490712:51555-51727 +		TAAAATTTT-TGTTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC---GTTA--T--TTGTTATTATACCC-------GTTACTCGTAGATTAAAA---------------AGGTATA-----------TTGTAATCGTT------------------G-AAACGTATGTAAAC---AGT------CCCT---A----------------------------TAAAATATTTTATTCTTGATCAG---GA-TCAATAGCCATGA-CGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGCCA-------TGTCA--------------------------------------------------------------------------------------------------------GTCG--------GT----------------------------------------ATGAATGTT---------------GAGATCT
droRho1	scf7180000777882:20130-20285 +		ATATTATTTTTATCTTCTT-ATGTT---TATCTTCTACATAAC-------------------------------------TTTTAAATAGTAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGAACTTGTGTCT------------------------------------------------------------TGT-----------------------------------------------------GGTTTTTTAAGCAGCTTGACCGCATGAAAATTGCAATTTCAGTTTCACTTTCGCAA-------CGAAG--------------------------------------------------------------------------------------------------------TGCT--------GTC------------------AAGT----------------------TTCT---------------TGGGTTT
droBia1	scf7180000301347:6450-6722 -		GTCTTCTACATAA-----------------------------T-----------------------------------------------------TCTCCTTTCCTGGTAAATATTTTATGTGATAGTTAAATTCACTTAATATTTCAAAAACCTGTGGAGTAAATATGATC--------------------------------------------------------------------------------------------------TAAAGTAT------TTAGTAGC----------------------------------CCATACGATTGCTAAAAGATATTTTTCTATAGTGGCA--------TAATTTATTTCGTACTCGTTAAG---GGTTGTGCTGGCATAA-CAAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT------TTATAATTTTGTGCTCCTATCGTCAT----TT---G------------------------------------------ACTTGAGTCTGTTGTCAGAGA--------ATATGGTT-----TGCTAAAG--------------TCGG---GATAAAT--------------------TAAA
droTak1	scf7180000414504:23340-23563 -		TATTTAAGAAAAGGT-----------------------------------------------------AAAAACATTTTT-------------AG-TGTTTATTCTTGGAATACATTAAGAGCGATAATCGTTTT---------------------------------------------------------------------T--TTCTTATCATA-------------------------------------------------------------------------------------------------CCTCTAAAG---ACA------AGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGACTAATAAGCCGTCTCCTCTATGTTTAAGGGGGGAGATACATTTAGAACTGCAAATTTTTCATGTTTTTCGTGTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATT-----------AGC------------------TGGGACT-TCGTAACTTGGCATGTTGATTA---------------CCTTATT
droEug1	scf7180000408752:6586-6797 -		TATATATATATATTTAT-----------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------TTATTATCTATGTATGGCCATAC-------------TAAAT------------GTGGTTTTGGAATAAAAAGTTTTAGTCTAT------CCTTTTGAACTATCTGTTTTT-----TGTTTCTGTGATT---AAC------TATT---A----------------------------TAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT------TCTATCTCCTATTTCTGT------TCC------------------------------------T------------T----TA--TACGGACC---------------------AG-TATATTTATAATCTATCATATGACTTGTTTCATTTCTTAATAATACTTT
dm3	chr2R:558577-558694 -		TCTTAACATATTTGCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---------AATTTTTTAGAATT-----------------------------------------------------------------CA-----------CCAATAAATAACGAAAAA-ATAAATA--------------------------------------------------------------------------------------------AATAAGGTTTTTCCCCCATGTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTCC---------------------------------------------------------------------------------------------ACCATCGA--CGCTAACTTG---------------TAGCACA
droSim2	node_11571:13697-13826 -		ATTTTTAAATTT-GTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTT-----------------------------------------------------------------------------TTTT--------CC-----------CCAATAACTATCGATAACC-CAGAAAAATTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATT------TCGCGTTCGCAT------TCACACTAG------------------------------------C------------T----GAGT--------AAC------------------GGGTATC-TGATAGTCGGA-GACTCGACTA---------------TAGCATT
droSec2	scaffold_5514:961-1076 +		ATTGAAAAAAAAA-----------------------------T-----------------------------------------------------TTTTAAATTTTGTTTCATATAATTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTT------TGTTCTATCTCCCAC------TCCCACTAG------------------------------------------------------TGGT--------ATC------------------TGGTATC-TGATAGTCGAATAACTTTACTA---------------TAGCGTT
droYak3	2L:22273819-22273999 +		ACGAAATCCCCTACT------------------------------------GAAAATTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGTATATTATA---------TACTGATTTTA-------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------A-ATGAACT--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCACAGGCTTCATTTTAATAGTTCGATGATAAGAATTATTGTAT------------T----GATC--------TAC---AAGAAATTAGATTTT--------------ATG---AATCCATTTA---------------TAGTCAC
droEre2	scaffold_4845:22463961-22464123 -		TTATTATATATATTCTCTTCAAAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTT-------A----------------------GTTTTTTTAAAGTTTTAGTATTTGTCT--------TG-----------CAAGTTTCTATCGATACGT-CAAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT------TTTCAATT------TCTCCCTCGAAC------TCCTACTAT------------------------------------C------------G----TAGC--------AAC------------------GGGTATA-TGATAGTCGAAGGGTGCGACTA---------------TAGGGGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CGATCCTGATG---------AAGAT---TGTCATCTACATAATTCCCAGTTGTTAATGAAGGGTAGGTAAACATATT-------------------------------------------------------------------------------------------------------------TATTATATCTTA---------TTATAATTATACCCTGAACACATTGAAAAT------------GGGATTTTTAAAAGGCATATTTTAATGTAT------CCGCATGTT---------TTGTTTCTTGTGTAAGCAGAT---AGA------CGAT---A----------------------------AGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCT------TGCTCTTGCTCTTGC----TC--TTG----------------------------------------C------------TCAAAGAGG--------TCA------------------GGGGATT-TCATAGTCGA---GCTCAACTA---------------GAGCTTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................TGTAAGCAGAT---AGA------CGAT---A----------------------------AGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T...................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..................................CTACATAATTCCCAGTTGTTAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AT------CCGCATGTT---------TTGTTTCTTGTGTAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
........................................................................ATATT-------------------------------------------------------------------------------------------------------------TATTATATCTTA---------TG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.67	4	4	0	0	0	0	0
.........................................................................TATT-------------------------------------------------------------------------------------------------------------TATTATATCTTA---------TG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	1	0	0	0	0	0

droVir3

TAACCATATTTGTTTGCCATAAAAACAGCTAAACC-------------------------------------------------------------------------GAATTCATTGAAAACAAAC---------------------------CAT----------------TTGAAAAAAATCATGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCC-------------------AAAAACGGTGT--TCGAAGATAGAAAAAAAAA----------------------------------------------------------------------------ACAGGTTCAAGCGTCGATCATA----------------------------------------------------------------------------------------------------------------A------------AG---AC-----GGAGTTGG-------A----------------TTTC---------------GATCGACTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--TCGAAGATAGAAAAAAAAA----------------------------------------------------------------------------ACAGGT.....................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TCATGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCC-------------------AAAAACGGTGT--..........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AATCATGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCC-------------------AAAAACGGTGT--..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TTATACCCTGAACCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAAATGCGTGAAAA---------------GGGTATA-----------ATGATTTTGAG------------------T-AAATGTATGTATGTAAGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAAGGA---------------AGCATCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AATTTAAAGGGG----------------------------------------CTGGAAAAAAGAAAGTATACATATG-----------------------------------------------------------------------------------------------------------------------TACATATATTTGAATAATTGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGGAGGGGGTAAGGTTTCAAATTTGAAAAGAACACAATAAAAGTTATATCTTATTTTAGAATAATTTTTTTTTTGTCCAAAAAATAAACTATAAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TTTAAATTT---------------ATGTTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TTTAAATT.......................	27	5	4.20	21	0	2	0	19	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CCATGTTTGA---TTTAAATTT---------------ATGTTT.	27	2	3.00	6	0	1	0	5	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG-CCATGTTTGA---TTTAAATTT---------------ATGT...	27	2	3.00	6	0	0	0	6	0
...TTAAAGGGG----------------------------------------CTGGAAAAAAGAAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	1	0
.....................................................TGGAAAAAAGAAAGTATACATATG-----------------------------------------------------------------------------------------------------------------------TA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TTTAAATT.......................	28	5	1.80	9	0	1	0	8	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CCATGTTTGA---TTTAAATTT---------------ATGTT..	26	2	1.50	3	0	0	0	3	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CCATGTTTGA---TTTAAATTT---------------ATGT...	25	2	1.50	3	0	0	0	3	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TTTAAATT.......................	26	5	1.20	6	0	1	0	5	0
.....................................................TGGAAAAAAGAAAGTATACATATG-----------------------------------------------------------------------------------------------------------------------TAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
....................................................................ATACATATG-----------------------------------------------------------------------------------------------------------------------TACATATATTTGAATAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
..TTTAAAGGGG----------------------------------------CTGGAAAAAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACTATAAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTT.....................................	28	1	1.00	1	0	0	0	1	0
..........................................................AAAAGAAAGTATACATATG-----------------------------------------------------------------------------------------------------------------------TACATATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGGAGGGGGTAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.....................................................TGGAAAAAAGAAAGTATACATATG-----------------------------------------------------------------------------------------------------------------------TACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
...................................................................TATACATATG-----------------------------------------------------------------------------------------------------------------------TACATATATTTGAATAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
.....................................................................TACATATG-----------------------------------------------------------------------------------------------------------------------TACATATATTTGAATAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TT.............................	26	2	1.00	2	0	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TTTAAAT........................	27	5	0.80	4	0	1	0	3	0
.............................................................................................................................................................................................................TTGAATAATTGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	0.67	2	0	1	0	1	0
..........................................................................................................................................................................................................TATTTGAATAATTGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	0.67	2	0	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGA---TTTAAATTT---------------ATGTT..	21	2	0.50	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG-CCATGTTTGA---TTTAAATTT---------------ATG....	26	2	0.50	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CCATGTTTGA---TTTAAATTT---------------ATGTTT.	26	2	0.50	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TTTA...........................	27	2	0.50	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG-CCATGTTTGA---TTTAAATTT---------------ATGTTT.	29	2	0.50	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CCATGTTTGA---TTTAAATTT---------------ATG....	24	2	0.50	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TT.............................	27	2	0.50	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TTTAAAT........................	26	5	0.40	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TTTAAATT.......................	25	5	0.40	2	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TT.............................	22	5	0.40	2	0	1	0	1	0
..............................................................................................................................................................................................................TGAATAATTGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0
.............................................................................................................................................................................................................TTGAATAATTGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	1	0
.............................................................................................................................................................................................................TTGAATAATTGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	1	0
..............................................................................................................................................................................................................TGAATAATTGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0
.....................................................................................................................................................................................................................TTGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0
..................................................................................................................................................................................................................TAATTGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGGAGGGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0
........................................................................................................................................................................................................................TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACT-TAAGGAGGGGGTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------GTATG-CCATGTTTGA---TTTAAAT........................	25	5	0.20	1	0	1	0	0	0

dp5

ATACTATTATTATTATA--------------------TAAATG-------------------------------------TAATGAAAAGAGGAGA----------------------------------------------------------------GCTAAATGTAATT--------------------------------------------------------------------------------------------------TAATGAAT---------------------------------------TGAATTAGTGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAAGCCAGAGCGGCAGCTTTTGGTGCTCAGCGGAGAT-----ACTTAGAGACCCCT------TGCTCTCGCTCTCGC----TC--TC--------------------------------------------------------------------------------------------------------------------------------------------GCTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............TATA--------------------TAAATG-------------------------------------TAATGAAAAGAGGAGA----------------------------------------------------------------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GAATTAGTGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGA.....................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................ATTAGTGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAAGCCAGAGCGGCA........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................AATGAAT---------------------------------------TGAATTAGTGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGA.....................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................GTGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAAGCCAGAGCGGCA........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AT---------------------------------------TGAATTAGTGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAAGCCAGA..............................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................AGTGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAAGCCAGAGCGGC.........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTTTTGGTGCTCAGCGGAGAT-----A............................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................AGTGGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAAGCCAGAGCGGCAG.......................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1

droPer2

TTATTGAATTTAAATAT---------AATTTCATCAACTTTGATCTCAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTATTAAA---------ATA-----TTTTTT-------G----------------------GTATTTTTATAGTCG---TATTTTTCTTTA------CTATTATCT---CCTATAAGAAAGAAGATT-ATT---G--------------------------------ATAAAAGTTTTTCCT------------------------------------------------------------CAA-----------------------------------------------------AGTCTTTCGTACATAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------GAAC--------TAT---CGAAAATTGGCCCAA--------------TCG---GGCTCAACTA---------------AG----G	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

GATTATGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGTTTTAATCTAT------CTTTATGTACTATTTGTTTTT-----TATTTTTATTATC---TGA------TATA---G----------------------------TTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATC------CCTATCTCCTATTTGTTC------TAC------------------------------------C------------T----TA--TAGGTGCC---------------------TG-TATAT----------------TTAA---------------AATCTAGCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------TAC------------------------------------C------------T----TA--TAGGTGCC---------------------TG-TAT..............................................	21	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC------CCTATCTCCTATTTGTTC------TAC------------------------------------C------------T----.....................................................................................	27	20	0.30	6	6	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC------CCTATCTCCTATTTGTTC------TAC------------------------------------.......................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................A---G----------------------------TTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATC------CCTATCTCCTAT..........................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0

droBip1

TATTTTTTATAT-TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATTGTAC----------------------GTAAAGATAAGATTATGTAAAGTAAAGATT--------ATGTAAATGTA------------------AATTATGTACGTAAAG---ATA------AGAT---A----------------------------TGAAA-------------------------------------------------------------------------------------------------------------------------------------------TAGTTTTTTTTTGTATATATC---------------------------------------------------ATAGGTGCATCTT--------------------------------------------------------------------------------------------------------------------------------------------------------TAACATA--------TCAGAATT-----TGGCATT-----------------GA---GCGTTGTTA---------------TTTTTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAAGTTATTGAAATCGG-----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAAACTTGGAATACCTT-CTGTGT------CTGATTGAT---------CTG-----TTCTTTTGTGTTC---TTT------TGTT---A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATA--------TTTGATCT-----TGCTCTTG-------T----------------TCTT---------------GATCTCGCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATGTTTTCAACAGAC------------------------------------AAAA----AATAATTTTTAACTTGCG-----------------------------------------------------------------------------------------------------------------------TA----------------------------------------------------------------GACAAATTTTAAAATTT------TCATTTGT-------------------------------------------------------------------------------TC--------AA-----------CCAATCGCTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACCAAC------CTTTAAAAATTTTTTTTCGATTTTTT-----------T--------TCTTATTTTTTTTCTAAGAGA--------GCAGAGTT-----TTCTTTCG-------T----------------TTGG---------------GATCTCGTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAAAATTTT-TGTTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC---GTTA--T--TTGTTATTATACCC-------GTTACTCGTAGATTAAAA---------------AGGTATA-----------TTGTAATCGTT------------------G-AAACGTATGTAAAC---AGT------CCCT---A----------------------------TAAAATATTTTATTCTTGATCAG---GA-TCAATAGCCATGA-CGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGCCA-------TGTCA--------------------------------------------------------------------------------------------------------GTCG--------GT----------------------------------------ATGAATGTT---------------GAGATCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATATTATTTTTATCTTCTT-ATGTT---TATCTTCTACATAAC-------------------------------------TTTTAAATAGTAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGAACTTGTGTCT------------------------------------------------------------TGT-----------------------------------------------------GGTTTTTTAAGCAGCTTGACCGCATGAAAATTGCAATTTCAGTTTCACTTTCGCAA-------CGAAG--------------------------------------------------------------------------------------------------------TGCT--------GTC------------------AAGT----------------------TTCT---------------TGGGTTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTCTTCTACATAA-----------------------------T-----------------------------------------------------TCTCCTTTCCTGGTAAATATTTTATGTGATAGTTAAATTCACTTAATATTTCAAAAACCTGTGGAGTAAATATGATC--------------------------------------------------------------------------------------------------TAAAGTAT------TTAGTAGC----------------------------------CCATACGATTGCTAAAAGATATTTTTCTATAGTGGCA--------TAATTTATTTCGTACTCGTTAAG---GGTTGTGCTGGCATAA-CAAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT------TTATAATTTTGTGCTCCTATCGTCAT----TT---G------------------------------------------ACTTGAGTCTGTTGTCAGAGA--------ATATGGTT-----TGCTAAAG--------------TCGG---GATAAAT--------------------TAAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATTTAAGAAAAGGT-----------------------------------------------------AAAAACATTTTT-------------AG-TGTTTATTCTTGGAATACATTAAGAGCGATAATCGTTTT---------------------------------------------------------------------T--TTCTTATCATA-------------------------------------------------------------------------------------------------CCTCTAAAG---ACA------AGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGACTAATAAGCCGTCTCCTCTATGTTTAAGGGGGGAGATACATTTAGAACTGCAAATTTTTCATGTTTTTCGTGTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATT-----------AGC------------------TGGGACT-TCGTAACTTGGCATGTTGATTA---------------CCTTATT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TATATATATATATTTAT-----------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------TTATTATCTATGTATGGCCATAC-------------TAAAT------------GTGGTTTTGGAATAAAAAGTTTTAGTCTAT------CCTTTTGAACTATCTGTTTTT-----TGTTTCTGTGATT---AAC------TATT---A----------------------------TAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT------TCTATCTCCTATTTCTGT------TCC------------------------------------T------------T----TA--TACGGACC---------------------AG-TATATTTATAATCTATCATATGACTTGTTTCATTTCTTAATAATACTTT	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCTTAACATATTTGCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---------AATTTTTTAGAATT-----------------------------------------------------------------CA-----------CCAATAAATAACGAAAAA-ATAAATA--------------------------------------------------------------------------------------------AATAAGGTTTTTCCCCCATGTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTCC---------------------------------------------------------------------------------------------ACCATCGA--CGCTAACTTG---------------TAGCACA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCC---------------------------------------------------------------------------------------------ACCATCGA--CGCTAACTTG---------------TAGCA..	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATTTTTAAATTT-GTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTT-----------------------------------------------------------------------------TTTT--------CC-----------CCAATAACTATCGATAACC-CAGAAAAATTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATT------TCGCGTTCGCAT------TCACACTAG------------------------------------C------------T----GAGT--------AAC------------------GGGTATC-TGATAGTCGGA-GACTCGACTA---------------TAGCATT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAGT--------AAC------------------GGGTATC-TGATAGTCGGA-................................	26	20	7.70	154	0	0	0	0	0	0	78	0	69	0	7	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAGT--------AAC------------------GGGTATC-TGATAGTCGGA-GA..............................	28	17	2.41	41	0	0	0	0	0	0	21	1	18	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATC-TGATAGTCGGA-GACT............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TAACTATCGATAACC-CAGAAAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-TGATAGTCGGA-GACTCGACT.......................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TCACACTAG------------------------------------C------------T----GAGT--------AAC------------------GGGTA...............................................	24	20	0.90	18	0	0	0	0	0	0	0	15	0	0	0	0	3	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAGT--------AAC------------------GGGTATC-TGATAGTCGGA-G...............................	27	17	0.76	13	0	0	0	1	0	0	4	0	4	1	0	0	3	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CC-CAGAAAAATTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATT------TCGCGTT...............................................................................................................................................................	27	4	0.75	3	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------TCACACTAG------------------------------------C------------T----GAGT--------AAC------------------GGGT................................................	24	20	0.65	13	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................CTATCGATAACC-CAGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	18	9	0.44	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TCACACTAG------------------------------------C------------T----GAGT--------AAC------------------GGG.................................................	22	20	0.25	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAG------------------------------------C------------T----GAGT--------AAC------------------GGGTA...............................................	20	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATT------TCGCGTTCGCAT------TCACACT.............................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG------------------------------------C------------T----GAGT--------AAC------------------GGGTATC-TGAT........................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------TCACACTAG------------------------------------C------------T----GAGT--------AAC------------------GGGTA...............................................	25	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------C------------T----GAGT--------AAC------------------GGGTATC-TGATAGTCGGA-................................	28	18	0.11	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT--------AAC------------------GGGTATC-TGATAGTCGGA-GA..............................	26	19	0.11	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------TCACACTAG------------------------------------C------------T----GAGT--------AAC------------------GGG.................................................	23	20	0.10	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAT------TCACACTAG------------------------------------C------------T----GAGT--------.........................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATC-TGATAGTCGG..................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAT------TCACACTAG------------------------------------C------------T----GAGT--------AAC------------------GGG.................................................	25	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------T----GAGT--------AAC------------------GGGTATC-TGATAGTCGGA-................................	27	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCAT------TCACACTAG------------------------------------C------------T----GAGT--------.........................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAT------TCACACTAG------------------------------------C------------T----GA...................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAATTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT.............................................................................................................................................................................	16	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAGT--------AAC------------------GGGTATC-TGATAGTCGGA-GC..............................	28	18	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAGT--------AAC------------------GGGTATC-TGATAGTCGGA-GT..............................	28	19	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TCACACTAG------------------------------------C------------T----GAGT--------AAC------------------GGGTAT..............................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAT------TCACACTAG------------------------------------C------------T----GAGT--------AAC------------------....................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG------------------------------------C------------T----GAGT--------AAC------------------GGGTATC-TG..........................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGT--------AAC------------------GGGTATC-TGATAGTCGGA-................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTCGCAT------TCACACTAG------------------------------------C------------T----GAG..................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

ATTGAAAAAAAAA-----------------------------T-----------------------------------------------------TTTTAAATTTTGTTTCATATAATTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTT------TGTTCTATCTCCCAC------TCCCACTAG------------------------------------------------------TGGT--------ATC------------------TGGTATC-TGATAGTCGAATAACTTTACTA---------------TAGCGTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ACGAAATCCCCTACT------------------------------------GAAAATTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGTATATTATA---------TACTGATTTTA-------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------A-ATGAACT--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCACAGGCTTCATTTTAATAGTTCGATGATAAGAATTATTGTAT------------T----GATC--------TAC---AAGAAATTAGATTTT--------------ATG---AATCCATTTA---------------TAGTCAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................TTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	4.65	93	0	85	5	0	0	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATT------TTTGACACCCAC------ATCCACAGGC..........................................................................................................................................	27	14	3.07	43	0	26	14	3	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCACAGGC..........................................................................................................................................	28	14	0.93	13	0	10	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------TTTGACACCCAC------ATCCACAGGCT.........................................................................................................................................	25	14	0.50	7	0	4	3	0	0	0	0	0	0	0	0
..........................................................TATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.45	9	0	8	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATT------TTTGACACCCAC------ATCCACAGGCT.........................................................................................................................................	28	14	0.36	5	0	5	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCACAGGCT.........................................................................................................................................	29	14	0.36	5	0	4	1	0	0	0	0	0	0	0	0
........................................................TTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.35	7	0	2	3	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT------TTTGACACCCAC------ATCCACAGG...........................................................................................................................................	25	14	0.29	4	0	0	0	0	0	0	0	0	0	0	4
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACCCAC------ATCCACAGGCTTCATT....................................................................................................................................	28	14	0.21	3	0	3	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGTTCGATGATAAGAATT.............................................................................................................	22	20	0.20	4	0	2	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TACTGATTTTA-------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------A-ATGAACT--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------......................................................................................................................................................................	27	19	0.16	3	0	3	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TGGGAATATTTTTGGTATATTATA---------TAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	1	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACCCAC------ATCCACAGGC..........................................................................................................................................	21	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TTTGACACCCAC------ATCCACAGGC..........................................................................................................................................	23	14	0.14	2	0	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACCCAC------ATCCACAGGCTTCATT....................................................................................................................................	26	14	0.14	2	0	1	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT------TTTGACACCCAC------ATCCACAGGC..........................................................................................................................................	25	14	0.14	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT------TTTGACACCCAC------ATCCACAGGC..........................................................................................................................................	26	14	0.14	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATT------TTTGACACCCAC------ATCCACAGG...........................................................................................................................................	26	14	0.14	2	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCACA.............................................................................................................................................	27	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGTTCGATGATAAGAATTATT..........................................................................................................	25	19	0.11	2	0	1	1	0	0	0	0	0	0	0	0
......................................................AATTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
........................................................TTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................TATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGTATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................................TTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTAATAGTTCGATGATAAGAA...............................................................................................................	26	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACCCAC------ATCCACAGGCT.........................................................................................................................................	23	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCACAGG...........................................................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAC------ATCCACAGGCTTCATTTTAATAG.............................................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACCCAC------ATCCACAGGCTTCATTT...................................................................................................................................	29	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------TTTGACACCCAC------ATCCACAGGC..........................................................................................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACCCAC------ATCCACAGGCTT........................................................................................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TTTGACACCCAC------ATCCACAGGCC.........................................................................................................................................	24	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TTTGACACCCAC------ATCCACAGGCTTC.......................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------TTTGACACCCAC------ATCCACAGGCTTCA......................................................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGAACT--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATC.................................................................................................................................................	28	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT------TTTGACACCCAC------ATCCACAGGCTT........................................................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACCCAC------ATCCACAGGCTTCATTT...................................................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------TTTGACACCCAC------ATCCACAGGCTT........................................................................................................................................	26	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACCCAC------ATCCACAGGC..........................................................................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCAC..............................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCACAGG...........................................................................................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT------TTTGACACCCAC------ATCCACAGGCT.........................................................................................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACCCAC------ATCCACAGGCTTCA......................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCACAG............................................................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TTTGACACCCAC------ATCCACAGGCTT........................................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TTTGACACCCAC------ATCCACAGGCTTCA......................................................................................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGAACT--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------A...................................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCCAC------ATCCACAGGCTTCATTT...................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACCCAC------ATCCACAGGC..........................................................................................................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACCCAC------ATCCACAGGCTTC.......................................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CT--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCA...............................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACT--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCA...............................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATT------TTTGACACCCAC------ATC.................................................................................................................................................	20	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AACT--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGACACCCAC------ATCCA...............................................................................................................................................	28	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAATTATTGTAT------------T----GATC--------TAC---AAGA...............................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGAATTATTGTAT------------T----GATC--------TAC---A..................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TATTATA---------TACTGATTTTA-------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------A-ATGAACT--------------------------------------------------------------------------------------------C.......................................................................................................................................................................................................................................................................................................................................	28	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGTTCGATGATAAGAATTA............................................................................................................	23	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TATTATA---------TACTGATTTTA-------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------A-ATGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGTTCGATGATAAGAATTATTG.........................................................................................................	26	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC------ATCCACAGGCTTCATTTTAATAGTT...........................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGCTTCATTTTAATAGTTCGA........................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................TGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGTATATTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------ATCCACAGGCTTCATTTTAATAG.............................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............T------------------------------------GAAAATTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................GAAAATTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................ATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TTGGGAATATTTTTGGTATATTATA---------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................TTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAT------------T----GATC--------TAC---AAGAAATT...........................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC------ATCCACAGGCTTCATTTTAATAGT............................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACAGGCTTCATTTTAATAGTTCGAA.......................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACAGGCTTCATTTTAATAGTTCG.........................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGTTCGATGATAAGAA...............................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
........................................................TTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTAATAGTTCGATGATAAGAAT..............................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GGGAATATTTTTGGTATATTATA---------TAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................TTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TA-------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------A-ATGAACT--------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATT------TTTGAC................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAAGAATTATTGTAT------------T----GATC--------.........................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............T------------------------------------GAAAATTTATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................ATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATAGTTCGATGATAAGAAT..............................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................TATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATAGTTCGATGATAAGAAT..............................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TATA---------TACTGATTTTA-------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------A-ATGAACT--------------------------------------------------------------------------------------------C.......................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................TATGTT-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................T-------------------------------------------------------------------------------------------------------------TTGGGAATATTTTTGGTATATTATA---------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TTATTATATATATTCTCTTCAAAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTT-------A----------------------GTTTTTTTAAAGTTTTAGTATTTGTCT--------TG-----------CAAGTTTCTATCGATACGT-CAAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT------TTTCAATT------TCTCCCTCGAAC------TCCTACTAT------------------------------------C------------G----TAGC--------AAC------------------GGGTATA-TGATAGTCGAAGGGTGCGACTA---------------TAGGGGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_1382

scaffold_6498:1788579-1788729 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.7	-22.6	-22.5