dmo_1353

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GGGACCGGCTACTCTCGGAGCAAGTATGCAATAGTGATAATATTCCAAGCGTAAGTAGATTTATGCATATACTGTATATAAATAGCTTTATAAACATCGCCCTGTCCGTCTGATATACAATTACATATACCTTCCACATCTTTTATTCATTCATTACAGGTAAATCAGCTACATTTTTATACCCTGAACCCATTGAAAATGGGAGATCAGGGTAAAATGGTTTTGTGAAAAGTATGTAACAGGCAGAAGGA ************************************************.....((.....(((........(((((....(((((.............(((((.....(((.................................)))......)))))......)))))......)))))........)))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo
...................................................................................AGCTTTGTACACACCGCCC.....................................................................................................................................................	19	3	15	0.07	1	1

CCCTGGCCGATGAGAGCCTCGTTCATACGTTATCACTATTATAAGGTTCGCATTCATCTAAATACGTATATGACATATATTTATCGAAATATTTGTAGCGGGACAGGCAGACTATATGTTAATGTATATGGAAGGTGTAGAAAATAAGTAAGTAATGTCCATTTAGTCGATGTAAAAATATGGGACTTGGGTAACTTTTACCCTCTAGTCCCATTTTACCAAAACACTTTTCATACATTGTCCGTCTTCCT ************************************************.....((.....(((........(((((....(((((.............(((((.....(((.................................)))......)))))......)))))......)))))........)))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	V056 head	M060 embryo
................................................................................................................................TGGAGGGTGTAGAATATA.........................................................................................................	18	2	5	0.20	1	1	0	0
.....................................................................................................................................GGTGTAGAAAAAAAGTAAGGG.................................................................................................	21	3	7	0.14	1	0	1	0
.........................................................................................................................................................................................CTTGGGTAACTTTTACCCTCTAGT..........................................	24	0	9	0.11	1	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6498:1330664-1330914 -	dmo_1353	GGGACCGGCTACTCTCGGAGCAAGTATGCAATAGT-------------------------------------------------------------------------------------------------------GATAATA---TT-----CCAA------------------------GCGTAAGTAGATTTATGCAT--------------------------------------------------------------------------------------------------ATACTGTATAT--------------------------------------------------------------------------------------------------------------------------AAATAGCTTTATAAA--------------------CAT---------------------CGCCCTGTC------CGTCTGATATAC---------------------AATTACATATACCT-----TCCAC--------------------------------------------------------ATCTTTTAT-TC----------------------ATT-----C------------ATTACAG----GTA---------------------------------------------------AATC---A------GCT---ACATTT-------------TTATACCCTGAACCCATTGAAAA---TGGGA------GATCAGGGTAAAATGGTTTTG-TG-------AAAAGTATGTAACAGGCAGAAGGA
droVir3	scaffold_12958:833359-833601 -		TCGACCGATTGCTCCTATGGCAGCTGTA----------------------------------------------------------------------------------------------------------------T---GATATA----------------------------------------------------------------------GCGGTCCGATCTCAAAAGGATGT--------------------TG----CATATTTAAGA--AGAGCATGACTTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAATGTGTCT-----------------TCATACAACAACTTC-------------------------------------------------------------------------ATTTTCAA--------------------------------C--------------------CGATCGTTCCTATG------------GCATC------------------------------TA---------------------------------------------------TATT---A------ATA---GGATTT-------------TTATACCCTAAACCCATTCAAAA---TGCGA------AGAAAGGGTATATTGTATTTGTGCAAAATTCAAATGTATGTAACAGGCAGAAGGA
droGri2	scaffold_15245:11362274-11362481 -		GTGCAAAT----------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------TATATATGTATATATATATATATATATATAGAT------------------ATGACCATGACATGGGTATA------CATATG--------------------------------------------------------------------------------------------------------------TAGAAAACATGTACAATATTTCG--CACCAAAT--TTCT-----------------------------------------TGAAGCT---------------------CCGCAAAACAAA---------------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA---ATATTT-------------TTATACCTTGAACCCATT-AAAA---TGGGT------AAGAAGGGTATAATGGTCTTGTGC-------AAATGTATGTAACAGACAGAAGGA
droWil2	scf2_1100000004521:8333411-8333631 +		ATGAGAAA------------A-----AGTTAAC---------------------------------------------------------------------------------------------------------ATCAAAA---CC-----TTAA------------------------GGAAATCAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT-------------------ATTAA--AATTAG--TTATTAT--------------------TTT---------------------CCCCTTTTC------TTTCTGTGATAA---------------------AAT---------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTTTGTTTTTAGTACTTTATTAACTTTAATACAACTCATTTACATGGC------TAT---TAATTT-------------TTATACCATACACCCA--------TA-GGGT-------GAAATGGTATATTAAAGTCGCCA-------AAATGTATGTAACAGGCAGAAGGA
dp5	XL_group3b:282134-282346 -		AATAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGT--------------------CGAGTG----ACAAAAA--GGTTTGTAA-----------TATTAAATAT--------------------------------------------------------------------------------------------------------------------------AAATTATTTTGTACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC-----------TCATCCA-----------------------------TATTTTCGA-GT--------ATAATTAGGTTATTTTTAAGTAATTAAA----------------TAAA---ATATTT-GAC---CCCTAT-------------TTATACCCGATACTCA----AAA---TGAGTATACTCAATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGACGGA
droPer2	scaffold_3:6862988-6863235 -		TACTTTCG---------TAGAGGATCTGTTGAA------------------------------GA-----------------------------------------------------------------GC--------AAATA---AT-----CCAT------------------------GT-----------------------------------------------------GTTGT--------------------AGATTG-------AAAC--AATGGGTTTTCGAAT----AAACT------------------------------------------------------------------------------------------------------------------GCATACA----------------------------------TACCTATGTAT---------------------TAGGTACAGTTT---------------------TTCAGTGTTTTGTACAATTT--TAGG---CCTTT-----T--TTTTATCTAT------------------------------------------------------------------------------TT-----C------------ATTATTT----GTA-----------------------------------------------------CAA---------G-C---TACATT-------------TTATACCCGATACTCA----AAA---TGAGT-------ACAGGGGTATAAGGGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGA
droAna3	scaffold_12948:321863-322053 -		CATATAAA------------C--------AAAAAT-------------------------------------------------------------------------------------------------------AAATATA---TA-----ATTA------------------------GAACCAGTTGATGTATGTAT----ATCTGT-----------------------------------------------------------------------------------------------ATGT--------------------------------------------------------------------------------------------------------------------------AATTTAATATGTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------CCATCT-CATTACCATTCATTTTTCCACCCATATCT-TA----GGGGTG---------------------------------------------------GTTC---T------GGA---ACATTT-------------TTATACCCTT-----G--------C--------------AGAGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGA
droBip1	scf7180000394860:16867-17081 -		CTCTCAG-------------CAATTATGCAAGTATGTAAAAGGAACCAG---------------A-----------AATAACTATA---------------------------------------------TG---CTTACTTTC---TT-----TTGTTCTATAATGTTACTCTTTCTTAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTTAC----A---------------------------------------GCTA-----AGTTTACATTTAG---------------------------------------------------------------------------------------------------------------------------------T-TT----------AATCTTAT--A---------------------------------------------------------------C---------------ATCTTCGACATATGCTTATTTGGCT---TTATTT-------------TTATACCCTT-----G--------C--------------AGAGGGTATTATAATTTTGTGC-------AAAAGTGTGCAACGCAGTGAAGGA
droKik1	scf7180000302383:979682-979896 -		GTTACAAT-------CGAGGGAAATCTGCAAAG------------------------------AGGAAAACATTTAAATAATTATA------------------------------------------------------T---AAATAA---------------------------------AT------------------ATAACAAAATATATTTATAGAT------------------ATAAAGATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGATTTATGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------TGATTC-AAA--A-----------------------TATATTCGA-TT--------AAATATTAATTGTA------------------------------TTTT---G------GCTATGGAATTT-------------TTATACCCTT-----G--------C----------------AGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGA
droFic1	scf7180000453221:43026-43241 +		GTATACA-----------------------ATA-------------------------------------------------------------------------------------------------------T-TATAATA---TATCTACGTA----------------------------------------TATGT----ACCTAT-----------------------------------------------------------------------------------------------ATATAATATAAAA--------------------------------------ACAAGAAATAGTGCTATATACCCTTGCAGTAATCA-----AATATGTCG--AACAAAAT--ATATGTA----------------------------------CATATGTATAT---------------------AGGCTAAACAAC---------------------AT---------------------------------------------------------------------------------------------------------------------------------C------------------------------GA---------------------------------------------------AGCT---A------TGT---TGATTT-------------TTATACCGTT-----G--------CA-GAGC-------A-AAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAACGA
droEle1	scf7180000488055:5314-5528 -		GCAAGTAA------------A-------TCATACT-------------------------------------------------------------------------------------------------------TTTAATG---TT-----TTCA------------------------GGATATTTAGTTT-----------------------------------------------------------------------------------------------TTGCAA----TAGCT------------------------------------------------------------------------------------------------------------------GCAAGGG----------------------------------TATATGAACTT---------------------CGGCTTGGCGAAGTTT----GC---------------------------------------------------------------TTCCTT------AATTTTATTTATATATT--------------------TATTTTATTTAATA------------ATATT-----T------------ATTATTT----GTA-----------------------------------------------------AATTTC------TTT---TACTTT-------------TTATACCCTT-----G--------C--------------AGAGGGTATTATAGTTTCAGTC-------AGAAGTTTGCAACGCAGTGAGGGA
droRho1	scf7180000779971:321795-322016 -		CTATTCT--------CGTTGTAATAAGATGATCCT---------------------------------------TAAAACATTCTATAAAATAAAACTAGATTAACTAGTATTTTTGTATGTACAGAAACTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGTG-TACCTGTCCTT--------------------------------------------------------------------------------------------------------------------GCAAAATAT----G----------------------------TTTA--------------TCAAC--------------------------------------------------------ATCTTTTGA-GA----------------------AGA-----G------------GATAC---------------------------------------------------------AAAAGCAGAAA------CAT---GAGTTT-------------TTATACCCTT-----G--------C--------------AGAGGGTATTATAATTTTTGTC-------AAAAGTGTGCAACGCATTGAAGGA
droBia1	scf7180000302193:2549240-2549485 +		AGGATCCTTAACATTCTGAGAGAGAGTCTAGTAG------------------------------A-------------------------------------------------------------------------AATATCG---CT-----CTA-----------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGTGTGATTAGATTGGATTGGATTGTGTTGAAATGACAGACCCAATTTGCAGAACAACTCTT------------------------------------------------------------------------GTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT-----------TTATTC-TACAATCAAGTATTTCGTTATCCATACCT-CC----ATTTTGGTAATAGACTATTTTGT----------------------------------TATT---A------TTT---AGATTT-------------TTATATCCGTTACTTA--------TG-GAGT-------AAAAG-----------------C-------GACAATATGTAACAGGCAAAAAGA
droTak1	scf7180000415091:44557-44812 +		TTTAGTAG------------CCATTTTACAAAA------------------------------AG-------------------------------------------------------------------------GATTTTA---AT-----CTAA------------------------A--------------------------------TTTTTAGAA------------------ATAAAGTTTAT-----------------------------------------------ATGATGTCTAT-------T------GATA-------------------------------------------------------------------------TTTTTTTTATTTACCTTTTTGAT-ATTTA--AAATAC--------------------------------ATTTGA----------AA---------------------------------------------------------------------------CCTATTTAT-----------------------------------------------ATCTTATAT-TC----------------------AAT-----C-----TGACTGCT-TA----AGAATA---------------------------------------------------ATTT---G-TTTTTGTT---ATATTTTGAATCCCACTTTTTATACCCGTTACTCG--------TA-GAGT-------AAAAGGGTATACTAGATTCGTGC-------AAAAGTATGTAACAGCTAGAAGGA
droEug1	scf7180000408984:782519-782767 -		CAAGTAAG------------CTATT------A------------------------------------------------------------------------------------------------------------AGTTA---TAGTAATCTA----------------------------------------GCTAA----CTTTAT--------------------------------------------------AAATAT-------AAAAAAAGTATATAATATAATTAATTTAATATATATATATAAATGCCGTCAAAAACGAC---------------------------------------------------------------------------------------------------------------------------------------TG---------------------TAT---------------------TAA---------------------AATTACAGATG---CCTTT-----T---------------------------------------------------------CTTCTGG-----------TAATTTA-----------------------------TACGTT----GTA--------AAATTAGTGAAGCTA------------------------------------------TA----AGTATC-------------TTAAACTCGTGACCCA----ATACTA-GAGC-------AAAAGAGTATATTGTATTCGTTG-------AAAAATATGTAACAGCTAAAAGGA
dm3	chr2R:405683-405903 +		TATTTAAA------------------------AAA-------------------------------------------------------------------------------------------------------AATAGTA---TC-----TTAA------------------------AAGTATCTATTTCTTTTGCT--------------------------------------------------------------------------------------------------TCATTTTTT---------------------------------------------------------------------------------------------------------------------ATTGA--AAATAG--------------------------------CCTTTA----------ATCCTTTTTTTGTCGCGTTTT----GC-ACCG---------------------AAATAA-------------------------------------------AGTTACATTGC-AGATTTTAAC---------------------------------------------------------GTACAACA-TA--------TG---------------------------------------------------AATC---A-GTTTGATT---GTATTT-------------TTATACCCGTTACTCG--------TA-GAGT-------AAAATGGTA---TAGATTCGTTG-------AAAAGTATGTAACAGTTAGAAGAA
droSim2	node_19457:6261-6495 -		CTCCCAC-----CTTTTG-------------A------------------------------AAA-----------------------------------------------------------------ATAACA----T---AATATA---------------------------------GT-----------------------------------------------------GTTAT--------------------AA-------------------------------------TAT-----------------------------------------------------------------------------------------------------------------------------------------------ATAATATAAGTTA-----------------TTATATAAACATTTT-------------------------------------------------------------------------TTTTTTATTTATGTCCTTATTAATATTTATATTTCTAGATAATTATGGTTATCATATGATTTGT-TT----------ATTATTAT--G---------------------------------------------------------------C---------------GT---GAATAAATGTT------AAT---TAGTAA-------------TTATACCCT-TACTCG--------TA-GAGT-------AAAAGGGTAAACT-GATACGTTG-------AAAAGTATGTAACAGGCAGAAGGA
droSec2	scaffold_643:7747-7961 -		AGTGATTG------------------TAAAATA-------------------------------------------------------------------------------------------------------TTGATATTA---TT-----CTAATTAATGATTTTCCCCATGTTTGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGAT----A---------------------------------------TCTGTCAGGGGTATTTATTTCATTGAGTTTT----CC---------------------------------------------------------------ATAATC------AATTACATTTCCATAGT--------------------TAATTTTTCAAGAA------------GCATC------------------------------AA---------------------------------------------------TAAA---A------AAT---TTATTT-------------TTATACCCGTCACTCG--------TATGGGT-------GAAAGGGTTTACTAGATTCGTTG-------AAAAGTATGTAACATG--------
droYak3	v2_chr2h_random_002:144871-145070 -		AGTAAGTA------------C--------TGA------------------------------AAA-----------------------------------------------------------------ACGAAA--TATATTA---TG-----CCCA------------------------AAATCTGTAGATTTATGAAT--------------------------------------------------------------------------------------------------TCTTTT-------------------TACAGAGAT---------------------------------------------------------------------------------------------------------------------------------------TT---------------------CACCAACACGAA------------------------------------------ATAGA---CATTT-----CCTTTTTAT-----------------------------------------------ATCTTATAT------------------------------------------------TATT------TG---------------------------------------------------C---------TTTGTTA---AAATGT-------------TTATACCCGTTACTCG--------TA-GAGT-------AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGA
droEre2	scaffold_4793:42097-42317 +		AAATATG---------------------TAACAGG--------TAGACGACCACACTTTTGAAAA-----------------------------------------------------------------ATGATA----T------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTATATAAGTTTTGTAA----------------------A------------TTTC---------------------------------TATC------GATTTGAAAAAAAAATATTCCGACGCCAC------------AAACCG-----TCCAA--------------------------------------------------------AACTGTCAC-G------------------------------------CCC-T---GTCATTG----GAA----------------------------------------------------AAT---G------TTC---TGATAT-------------TTATACCCGTTACTTG--------TA-AGGT-------GAGTGGGTATACTAGATTCGTTG-------AAAAGTATGTTACAGGTAGAAGG-

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GGGACCGGCTACTCTCGGAGCAAGTATGCAATAGT-------------------------------------------------------------------------------------------------------GATAATA---TT-----CCAA------------------------GCGTAAGTAGATTTATGCAT--------------------------------------------------------------------------------------------------ATACTGTATAT--------------------------------------------------------------------------------------------------------------------------AAATAGCTTTATAAA--------------------CAT---------------------CGCCCTGTC------CGTCTGATATAC---------------------AATTACATATACCT-----TCCAC--------------------------------------------------------ATCTTTTAT-TC----------------------ATT-----C------------ATTACAG----GTA---------------------------------------------------AATC---A------GCT---ACATTT-------------TTATACCCTGAACCCATTGAAAA---TGGGA------GATCAGGGTAAAATGGTTTTG-TG-------AAAAGTATGTAACAGGCAGAAGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droVir3

TCGACCGATTGCTCCTATGGCAGCTGTA----------------------------------------------------------------------------------------------------------------T---GATATA----------------------------------------------------------------------GCGGTCCGATCTCAAAAGGATGT--------------------TG----CATATTTAAGA--AGAGCATGACTTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAATGTGTCT-----------------TCATACAACAACTTC-------------------------------------------------------------------------ATTTTCAA--------------------------------C--------------------CGATCGTTCCTATG------------GCATC------------------------------TA---------------------------------------------------TATT---A------ATA---GGATTT-------------TTATACCCTAAACCCATTCAAAA---TGCGA------AGAAAGGGTATATTGTATTTGTGCAAAATTCAAATGTATGTAACAGGCAGAAGGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATGTATGTAACAGGCAGAAGG.	26	20	0.70	14	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	5	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATGTATGTAACAGGCAGAAT..	25	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATGTATGTAACAGGCAGA....	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATGTATGTAACAGGCAGAAGGA	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATGTATGTAACAGGCAGAAG..	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGG.	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATGTATGTAACAGGC.......	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GTGCAAAT----------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------TATATATGTATATATATATATATATATATAGAT------------------ATGACCATGACATGGGTATA------CATATG--------------------------------------------------------------------------------------------------------------TAGAAAACATGTACAATATTTCG--CACCAAAT--TTCT-----------------------------------------TGAAGCT---------------------CCGCAAAACAAA---------------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA---ATATTT-------------TTATACCTTGAACCCATT-AAAA---TGGGT------AAGAAGGGTATAATGGTCTTGTGC-------AAATGTATGTAACAGACAGAAGGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

ATGAGAAA------------A-----AGTTAAC---------------------------------------------------------------------------------------------------------ATCAAAA---CC-----TTAA------------------------GGAAATCAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT-------------------ATTAA--AATTAG--TTATTAT--------------------TTT---------------------CCCCTTTTC------TTTCTGTGATAA---------------------AAT---------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTTTGTTTTTAGTACTTTATTAACTTTAATACAACTCATTTACATGGC------TAT---TAATTT-------------TTATACCATACACCCA--------TA-GGGT-------GAAATGGTATATTAAAGTCGCCA-------AAATGTATGTAACAGGCAGAAGGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAAAGTCGCCA-------AAATGTATG...............	25	20	0.25	5	0	0	0	5	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGG.	21	20	0.15	3	0	3	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------TA-GGGT-------GAAATGGTATATTAAAG.....................................	24	20	0.10	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTCGCCA-------AAATGTATGTAACAG.........	26	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTT-------------TTATACCATACACCCA--------TA-GGG..............................................................	27	20	0.05	1	0	0	0	1	0

dp5

AATAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGT--------------------CGAGTG----ACAAAAA--GGTTTGTAA-----------TATTAAATAT--------------------------------------------------------------------------------------------------------------------------AAATTATTTTGTACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC-----------TCATCCA-----------------------------TATTTTCGA-GT--------ATAATTAGGTTATTTTTAAGTAATTAAA----------------TAAA---ATATTT-GAC---CCCTAT-------------TTATACCCGATACTCA----AAA---TGAGTATACTCAATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGACGGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGTAA............	26	20	1.80	36	0	36	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGA.....................	17	20	0.35	7	0	0	0	0	0	0	0	7	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTAAAAGTGGAT....................	21	20	0.30	6	0	0	0	0	0	0	0	6	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGTGT................	23	20	0.20	4	0	0	0	0	0	0	0	4	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAAAAGTGGATGTGTGTA.............	22	20	0.15	3	0	1	0	0	0	0	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTGT..............	23	20	0.15	3	0	0	0	0	3	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGGATGTGTGTAAC...........	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATATTAGATTTGTGGT..............................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGTAAC...........	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAG.........................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGGTATATTAGATTTGTG................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

TACTTTCG---------TAGAGGATCTGTTGAA------------------------------GA-----------------------------------------------------------------GC--------AAATA---AT-----CCAT------------------------GT-----------------------------------------------------GTTGT--------------------AGATTG-------AAAC--AATGGGTTTTCGAAT----AAACT------------------------------------------------------------------------------------------------------------------GCATACA----------------------------------TACCTATGTAT---------------------TAGGTACAGTTT---------------------TTCAGTGTTTTGTACAATTT--TAGG---CCTTT-----T--TTTTATCTAT------------------------------------------------------------------------------TT-----C------------ATTATTT----GTA-----------------------------------------------------CAA---------G-C---TACATT-------------TTATACCCGATACTCA----AAA---TGAGT-------ACAGGGGTATAAGGGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......G---------TAGAGGATCTGTTGAA------------------------------GA-----------------------------------------------------------------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTAAAAGTGGAT....................	21	11	1.18	13	0	0	0	0	0	13
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTAAAAGTGG......................	19	11	0.36	4	0	0	0	0	0	4
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTAAAAGTGGATG...................	22	9	0.22	2	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTAAAAGTGGATGTGTG...............	26	9	0.11	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTGTAACGT.........	28	20	0.05	1	0	0	0	0	0	1

droAna3

CATATAAA------------C--------AAAAAT-------------------------------------------------------------------------------------------------------AAATATA---TA-----ATTA------------------------GAACCAGTTGATGTATGTAT----ATCTGT-----------------------------------------------------------------------------------------------ATGT--------------------------------------------------------------------------------------------------------------------------AATTTAATATGTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------CCATCT-CATTACCATTCATTTTTCCACCCATATCT-TA----GGGGTG---------------------------------------------------GTTC---T------GGA---ACATTT-------------TTATACCCTT-----G--------C--------------AGAGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------CCATCT-CATTACCAT.......................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CATTACCATTCATTTTTCCACCCATA......................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----GGGGTG---------------------------------------------------GTTC---T------GGA---ACATTT-------------TTATA.......................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------CCATCT-CATTACCATT......................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCT-TA----GGGGTG---------------------------------------------------GTTC---T------GGA---ACA............................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTTCCACCCATATCT-TA----GGGG........................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................TATA---TA-----ATTA------------------------GAACCAGTTGATGTATGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-TA----GGGGTG---------------------------------------------------GTTC---T------GGA---ACATT..........................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATATGTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------CCATCT-CATTAC..........................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................A-----ATTA------------------------GAACCAGTTGATGTATGTAT----AT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCATTCATTTTTCCACCCATATCT-..................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTTCCACCCATATCT-TA----GGG.........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GGA---ACATTT-------------TTATACCCTT-----G--------C--------------AGAG.................................................	26	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTC-------AAAAGTGTGCAACG..........	20	20	0.35	7	0	0	0	0	0	7
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTC-------AAAAGTGTGCAACGCA........	26	20	0.05	1	0	0	0	0	1	0

droBip1

CTCTCAG-------------CAATTATGCAAGTATGTAAAAGGAACCAG---------------A-----------AATAACTATA---------------------------------------------TG---CTTACTTTC---TT-----TTGTTCTATAATGTTACTCTTTCTTAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTTAC----A---------------------------------------GCTA-----AGTTTACATTTAG---------------------------------------------------------------------------------------------------------------------------------T-TT----------AATCTTAT--A---------------------------------------------------------------C---------------ATCTTCGACATATGCTTATTTGGCT---TTATTT-------------TTATACCCTT-----G--------C--------------AGAGGGTATTATAATTTTGTGC-------AAAAGTGTGCAACGCAGTGAAGGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTTACAAT-------CGAGGGAAATCTGCAAAG------------------------------AGGAAAACATTTAAATAATTATA------------------------------------------------------T---AAATAA---------------------------------AT------------------ATAACAAAATATATTTATAGAT------------------ATAAAGATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGATTTATGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----------TGATTC-AAA--A-----------------------TATATTCGA-TT--------AAATATTAATTGTA------------------------------TTTT---G------GCTATGGAATTT-------------TTATACCCTT-----G--------C----------------AGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTATACA-----------------------ATA-------------------------------------------------------------------------------------------------------T-TATAATA---TATCTACGTA----------------------------------------TATGT----ACCTAT-----------------------------------------------------------------------------------------------ATATAATATAAAA--------------------------------------ACAAGAAATAGTGCTATATACCCTTGCAGTAATCA-----AATATGTCG--AACAAAAT--ATATGTA----------------------------------CATATGTATAT---------------------AGGCTAAACAAC---------------------AT---------------------------------------------------------------------------------------------------------------------------------C------------------------------GA---------------------------------------------------AGCT---A------TGT---TGATTT-------------TTATACCGTT-----G--------CA-GAGC-------A-AAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAACGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCAAGTAA------------A-------TCATACT-------------------------------------------------------------------------------------------------------TTTAATG---TT-----TTCA------------------------GGATATTTAGTTT-----------------------------------------------------------------------------------------------TTGCAA----TAGCT------------------------------------------------------------------------------------------------------------------GCAAGGG----------------------------------TATATGAACTT---------------------CGGCTTGGCGAAGTTT----GC---------------------------------------------------------------TTCCTT------AATTTTATTTATATATT--------------------TATTTTATTTAATA------------ATATT-----T------------ATTATTT----GTA-----------------------------------------------------AATTTC------TTT---TACTTT-------------TTATACCCTT-----G--------C--------------AGAGGGTATTATAGTTTCAGTC-------AGAAGTTTGCAACGCAGTGAGGGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTATTCT--------CGTTGTAATAAGATGATCCT---------------------------------------TAAAACATTCTATAAAATAAAACTAGATTAACTAGTATTTTTGTATGTACAGAAACTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGTG-TACCTGTCCTT--------------------------------------------------------------------------------------------------------------------GCAAAATAT----G----------------------------TTTA--------------TCAAC--------------------------------------------------------ATCTTTTGA-GA----------------------AGA-----G------------GATAC---------------------------------------------------------AAAAGCAGAAA------CAT---GAGTTT-------------TTATACCCTT-----G--------C--------------AGAGGGTATTATAATTTTTGTC-------AAAAGTGTGCAACGCATTGAAGGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGGATCCTTAACATTCTGAGAGAGAGTCTAGTAG------------------------------A-------------------------------------------------------------------------AATATCG---CT-----CTA-----------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGTGTGATTAGATTGGATTGGATTGTGTTGAAATGACAGACCCAATTTGCAGAACAACTCTT------------------------------------------------------------------------GTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT-----------TTATTC-TACAATCAAGTATTTCGTTATCCATACCT-CC----ATTTTGGTAATAGACTATTTTGT----------------------------------TATT---A------TTT---AGATTT-------------TTATATCCGTTACTTA--------TG-GAGT-------AAAAG-----------------C-------GACAATATGTAACAGGCAAAAAGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTAGTAG------------CCATTTTACAAAA------------------------------AG-------------------------------------------------------------------------GATTTTA---AT-----CTAA------------------------A--------------------------------TTTTTAGAA------------------ATAAAGTTTAT-----------------------------------------------ATGATGTCTAT-------T------GATA-------------------------------------------------------------------------TTTTTTTTATTTACCTTTTTGAT-ATTTA--AAATAC--------------------------------ATTTGA----------AA---------------------------------------------------------------------------CCTATTTAT-----------------------------------------------ATCTTATAT-TC----------------------AAT-----C-----TGACTGCT-TA----AGAATA---------------------------------------------------ATTT---G-TTTTTGTT---ATATTTTGAATCCCACTTTTTATACCCGTTACTCG--------TA-GAGT-------AAAAGGGTATACTAGATTCGTGC-------AAAAGTATGTAACAGCTAGAAGGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAAGTAAG------------CTATT------A------------------------------------------------------------------------------------------------------------AGTTA---TAGTAATCTA----------------------------------------GCTAA----CTTTAT--------------------------------------------------AAATAT-------AAAAAAAGTATATAATATAATTAATTTAATATATATATATAAATGCCGTCAAAAACGAC---------------------------------------------------------------------------------------------------------------------------------------TG---------------------TAT---------------------TAA---------------------AATTACAGATG---CCTTT-----T---------------------------------------------------------CTTCTGG-----------TAATTTA-----------------------------TACGTT----GTA--------AAATTAGTGAAGCTA------------------------------------------TA----AGTATC-------------TTAAACTCGTGACCCA----ATACTA-GAGC-------AAAAGAGTATATTGTATTCGTTG-------AAAAATATGTAACAGCTAAAAGGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TATTTAAA------------------------AAA-------------------------------------------------------------------------------------------------------AATAGTA---TC-----TTAA------------------------AAGTATCTATTTCTTTTGCT--------------------------------------------------------------------------------------------------TCATTTTTT---------------------------------------------------------------------------------------------------------------------ATTGA--AAATAG--------------------------------CCTTTA----------ATCCTTTTTTTGTCGCGTTTT----GC-ACCG---------------------AAATAA-------------------------------------------AGTTACATTGC-AGATTTTAAC---------------------------------------------------------GTACAACA-TA--------TG---------------------------------------------------AATC---A-GTTTGATT---GTATTT-------------TTATACCCGTTACTCG--------TA-GAGT-------AAAATGGTA---TAGATTCGTTG-------AAAAGTATGTAACAGTTAGAAGAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGTTAGAA...	27	2	13.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGTTAGA....	26	2	5.50	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGTTA......	25	2	3.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGTT.......	23	3	3.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCGTTACTCG--------TA-GAGT-------AAA...................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCCGTTACTCG--------TA-GA...............................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-------------TTATACCCGTTACTCG--------TA-GAGT-------A.....................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCGTTACTCG--------TA-GAG..............................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGTTG-------AAAAGTATGTA.............	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------TTATACCCGTTACTCG--------TA-GAG..............................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGTTG-------AAAAGTATG...............	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------TTATACCCGTTACTCG--------TA-GAGT-------......................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CTCCCAC-----CTTTTG-------------A------------------------------AAA-----------------------------------------------------------------ATAACA----T---AATATA---------------------------------GT-----------------------------------------------------GTTAT--------------------AA-------------------------------------TAT-----------------------------------------------------------------------------------------------------------------------------------------------ATAATATAAGTTA-----------------TTATATAAACATTTT-------------------------------------------------------------------------TTTTTTATTTATGTCCTTATTAATATTTATATTTCTAGATAATTATGGTTATCATATGATTTGT-TT----------ATTATTAT--G---------------------------------------------------------------C---------------GT---GAATAAATGTT------AAT---TAGTAA-------------TTATACCCT-TACTCG--------TA-GAGT-------AAAAGGGTAAACT-GATACGTTG-------AAAAGTATGTAACAGGCAGAAGGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------AAAAGTATGTAACAGGCAGA....	21	20	7.20	144	0	0	0	0	144	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGCAGAAGGA	24	20	4.90	98	0	0	0	0	0	0	0	0	0	0	73	0	25	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG--------TA-GAGT-------AAAAGGGTAAACT-GA......................................	24	1	4.00	4	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGTTATCATATGATTTGT-TT----------AT...................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTG-------AAAAGTATGTAACAGGC.......	24	5	2.20	11	0	0	0	0	0	0	4	2	3	0	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTAAACT-GATACGT.................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTAAACT-GATACGTTG-------AAAAGT..................	24	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GAGT-------AAAAGGGTAAACT-GATACGT.................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------TA-GAGT-------AAAAGGGTAAACT-GATC....................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-TT----------ATTATTAT--G---------------------------------------------------------------C---------------GT---GAATAAA...............................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACT-GATACGTTG-------AAAAGTA.................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTAAACT-GATACGTTG-------AAAAGTA.................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG--------TA-GAGT-------AAAAGGGTAAACT-GATA....................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------TTATACCCT-TACTCG--------....................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-TT----------ATTATTAT--G---------------------------------------------------------------C---------------GT---......................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GATACGTTG-------AAAAGTATGTAACAGGCA......	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-TT----------ATTATTAT--G---------------------------------------------------------------C---------------GT---GAA...................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTCCTTATTAATATTTATATTTCTAGA...........................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTAAACT-GATACGTTG-------AAAA....................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTGT-TT----------ATTATTAT--G---------------------------------------------------------------C---------------GT---GAA...................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGTTATCATATGATTTGT-T................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GAGT-------AAAAGGGTAAACT-GATAC...................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------C---------------GT---GAATAAATGTT------AAT---TAGTAA-------------T...........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------AAAAGGGTAAACT-GATACGTTG-------AAAAG...................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTG-------AAAAGTATGTAACAGGCA......	24	5	0.80	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--G---------------------------------------------------------------C---------------GT---GAATAAATGT............................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTG-------AAAAGTATGTAACAGGCAGA....	26	5	0.40	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GAGT-------AAAAGGGTAAAC..........................................	18	10	0.40	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-GAGT-------AAAAGGGTAAACT-........................................	19	10	0.30	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------AAAAGTATGTAACAGGCAGAAGGA	27	20	0.30	6	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTG-------AAAAGTATGTAACAGGCAGA....	27	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTG-------AAAAGTATGTAACAGGCAG.....	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-TACTCG--------TA-GAGT-------AAAA..................................................	18	12	0.17	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATTTGT-TT----------ATT..................................................................................................................................................................................................................................	15	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------AAAAGTATGTAACAGGCAGAAGG.	27	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG--------TA-GAGT-------AAAAGGGTAAACT-........................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG--------TA-GAGT-------AAAAGGGTAAA...........................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------AAAAGTATGTAACAGGCAGAAGGA	28	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG--------TA-GAGT-------AAAAGGGTAA............................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-TACTCG--------TA-GAGT-------AAA...................................................	17	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-TACTCG--------TA-GAGT-------A.....................................................	15	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGA	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGCAGAAG..	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTG-------AAAAGTATGTAACAGGC.......	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

AGTGATTG------------------TAAAATA-------------------------------------------------------------------------------------------------------TTGATATTA---TT-----CTAATTAATGATTTTCCCCATGTTTGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGAT----A---------------------------------------TCTGTCAGGGGTATTTATTTCATTGAGTTTT----CC---------------------------------------------------------------ATAATC------AATTACATTTCCATAGT--------------------TAATTTTTCAAGAA------------GCATC------------------------------AA---------------------------------------------------TAAA---A------AAT---TTATTT-------------TTATACCCGTCACTCG--------TATGGGT-------GAAAGGGTTTACTAGATTCGTTG-------AAAAGTATGTAACATG--------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AGTAAGTA------------C--------TGA------------------------------AAA-----------------------------------------------------------------ACGAAA--TATATTA---TG-----CCCA------------------------AAATCTGTAGATTTATGAAT--------------------------------------------------------------------------------------------------TCTTTT-------------------TACAGAGAT---------------------------------------------------------------------------------------------------------------------------------------TT---------------------CACCAACACGAA------------------------------------------ATAGA---CATTT-----CCTTTTTAT-----------------------------------------------ATCTTATAT------------------------------------------------TATT------TG---------------------------------------------------C---------TTTGTTA---AAATGT-------------TTATACCCGTTACTCG--------TA-GAGT-------AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-------------TTATACCCGTTACTCG--------TA-GAG..............................................................	24	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATAT------------------------------------------------TATT------TG---------------------------------------------------C---------TTTGTTA---AA.............................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATAT------------------------------------------------TATT------TG---------------------------------------------------C---------TTTGTTA---AAA............................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AAATATG---------------------TAACAGG--------TAGACGACCACACTTTTGAAAA-----------------------------------------------------------------ATGATA----T------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTATATAAGTTTTGTAA----------------------A------------TTTC---------------------------------TATC------GATTTGAAAAAAAAATATTCCGACGCCAC------------AAACCG-----TCCAA--------------------------------------------------------AACTGTCAC-G------------------------------------CCC-T---GTCATTG----GAA----------------------------------------------------AAT---G------TTC---TGATAT-------------TTATACCCGTTACTTG--------TA-AGGT-------GAGTGGGTATACTAGATTCGTTG-------AAAAGTATGTTACAGGTAGAAGG-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTG-------AAAAGT..................	21	20	0.20	4	0	0	0	0	0	4	0

dmo_1353

scaffold_6498:1330714-1330864 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads