ID:

dmo_1350

 Coordinate:

scaffold_6498:1297638-1297788 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.7 -11.4 -11.4 -11.2

Flybase annnotation

CDS [Dmoj\GI14102-cds]; exon [dmoj_GLEANR_14181:4]; intron [Dmoj\GI14102-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-
Homo6DNAhAT-Pegasus-
mature
  1. scaffold_558:1309-1334 +
  2. scaffold_1638:4086-4111 +
  3. scaffold_1741:799-824 +
  4. scaffold_2588:535-560 +
  5. scaffold_2664:383-408 +
  6. scaffold_4399:1712-1737 +
  7. scaffold_5024:537-562 +
  8. scaffold_6100:7053-7078 +
  9. scaffold_6348:38949-38974 +
  10. scaffold_6497:237971-237996 +
  11. dmo_1350  scaffold_6498:1297744-1297769 +
  12. scaffold_6500:30053097-30053122 +
  13. scaffold_6540:222258-222283 +
  14. scaffold_6540:1050635-1050660 +
  15. scaffold_6540:1068240-1068265 +
  16. scaffold_6541:1204783-1204808 +
  17. scaffold_6541:2077401-2077426 +
  18. scaffold_6680:23017747-23017772 +
  19. scaffold_6680:23172740-23172765 +
  20. scaffold_6680:24445326-24445351 +
  21. scaffold_2468:54-79 +
  22. scaffold_2563:674-699 +
  23. scaffold_3153:652-677 +
  24. scaffold_4070:3509-3534 +
  25. scaffold_5628:43-68 +
  26. scaffold_5941:223-248 +
  27. scaffold_6071:36922-36947 +
  28. scaffold_6103:34726-34751 +
  29. scaffold_6345:69136-69161 +
  30. scaffold_6451:14664-14689 +
  31. scaffold_6496:26771886-26771911 +
  32. scaffold_6498:627383-627408 +
  33. scaffold_6498:3039057-3039082 +
  34. scaffold_6540:1278420-1278445 +
  35. scaffold_6540:23835610-23835635 +
  36. scaffold_6541:1171172-1171197 +
  37. scaffold_6541:1769496-1769521 +
  38. scaffold_6679:8525-8550 +
  39. scaffold_6680:23276459-23276484 +
  40. scaffold_6680:24051786-24051811 +
  41. scaffold_694:1065-1090 +
  42. scaffold_2481:3224-3249 +
  43. scaffold_2490:2133-2158 +
  44. scaffold_3448:1751-1776 +
  45. scaffold_4184:4356-4381 +
  46. scaffold_4624:116-141 +
  47. scaffold_5538:2056-2081 +
  48. scaffold_5553:1443-1468 +
  49. scaffold_6473:1756328-1756353 +
  50. scaffold_6482:1270585-1270610 +
  51. scaffold_6491:97208-97233 +
  52. scaffold_6495:62387-62412 +
  53. scaffold_6496:26599383-26599408 +
  54. scaffold_6498:3172131-3172156 +
  55. scaffold_6498:3203692-3203717 +
  56. scaffold_6540:24461517-24461542 +
  57. scaffold_6540:33962919-33962944 +
  58. scaffold_6541:454393-454418 +
  59. scaffold_6541:2010069-2010094 +
  60. scaffold_6693:15274-15299 +
star
  1. scaffold_4257:3220-3240 +
  2. scaffold_4382:2373-2393 +
  3. scaffold_4427:6448-6468 +
  4. scaffold_5594:1959-1979 +
  5. scaffold_5779:8072-8092 +
  6. scaffold_6117:9839-9859 +
  7. scaffold_6387:1693-1713 +
  8. scaffold_6387:22988-23008 +
  9. scaffold_6482:382797-382817 +
  10. scaffold_6483:37005-37025 +
  11. dmo_1350  scaffold_6498:1297696-1297716 +
  12. scaffold_6498:2971707-2971727 +
  13. scaffold_6500:27136701-27136721 +
  14. scaffold_6500:29371738-29371758 +
  15. scaffold_6500:31941556-31941576 +
  16. scaffold_6540:438929-438949 +
  17. scaffold_6540:1038963-1038983 +
  18. dmo_2513  scaffold_6680:16965496-16965516 +
  19. scaffold_6680:24207832-24207852 +
  20. scaffold_6680:24210271-24210291 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCATTTATAATTTTAGTATATTATCCGATAAAAATGAGAAGTCCCATAAGTAAGTAAATAACCAGACACGCAAATACTTTAAGAACTGTTTAAACAAGTAAGAAAGCTATAGTCGAGACTGCTCGACTACGACATCCCCTGAACCCTTGGAGCAATAGATATTTCAATAATTTTTCGCGTCTTACAGCTTACACGCATGTGAAGTCTCTAGCTCTTATATCTTCTGAAATCGACGCGTTCATACATACGG
************************************************************************************************************.........((((((((.........................)))))........................)))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
............................................................................................................................................................TAGATATTTCAATAATTTTTCGCGTC..................................................................... 26 0 20 1.90 38 38 0 0 0 0
............................................................................................................TATAGTCGAGACTGCTCGACTACGCC..................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................AGATATTTCAATAATTTTTCGCGTCT.................................................................... 26 0 20 0.40 8 8 0 0 0 0
.......................................................................................................................................TCCCCTGAACCCTTGGAGCA................................................................................................ 20 0 20 0.35 7 7 0 0 0 0
............................................................................................................................................................TAGATATTTCAATAATTTTTCGCGT...................................................................... 25 0 20 0.35 7 7 0 0 0 0
....................................................................................................................................TCATCCCCTGAACCCTTGGAGCA................................................................................................ 23 1 3 0.33 1 0 1 0 0 0
.....................................................................................................................................................................................................................TCTTATATCTTCTGAAATCGACGCG............. 25 0 20 0.25 5 5 0 0 0 0
......................................................................................................................................................................................................................................TCGACGCGTTCATACATACGG 21 0 20 0.15 3 0 0 3 0 0
..........................................................................................................................................................................................................................TATCTTCTGAAATCGACGCGT............ 21 0 20 0.15 3 0 0 3 0 0
........................................................................................................................................................................TAATTTTTCGCGTCTTACAGCTTACAC........................................................ 27 0 20 0.10 2 1 0 0 0 1
............................................................................................................TATAGTCGAGACTGCTCGACT.......................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
............................................................................................................TATAGTCGAGACTGCTCGACTACGA...................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
..........................................................................................................................................CCTGAACCCTTGGAGCAATAGAT.......................................................................................... 23 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................ATATTTCAATAATTTTTCGCGTCT.................................................................... 24 0 20 0.10 2 2 0 0 0 0
............................................................................................................TATAGTCGAGACTGCTCGACTAC........................................................................................................................ 23 0 20 0.10 2 2 0 0 0 0
..................................................................................................................CGAGACTGCTCGACTACGA...................................................................................................................... 19 0 20 0.10 2 2 0 0 0 0
...................................................................................................................................TACGTCCCCTGAACCCTTGGAG.................................................................................................. 22 2 13 0.08 1 1 0 0 0 0
...........................................................................................................................................................ATAGATATTTCAATAATTTTTCGCGTC..................................................................... 27 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................GATATTTCAATAATTTTTCGCG....................................................................... 22 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................CTTGGAGCAATAGATATTTCAATAAT............................................................................... 26 0 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................................AATTTTTCGCGTCTTACAGCTT............................................................ 22 0 20 0.05 1 0 0 1 0 0
........................................................................................................................................................................TAACTTTTCGCGTCTTACAGCTTACAC........................................................ 27 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................TTCAATAATTTTTCGCGTCTTACAGCT............................................................. 27 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................ATTTCAATAATTTTTCGCGTC..................................................................... 21 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................AGAATTTTTCGCGTCTTACAGCTTAC.......................................................... 26 1 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................AATTTTTCGCGTCTTACAGCT............................................................. 21 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................ATTTCAATAATTTTTCGCGTCTT................................................................... 23 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................TAATTTTTCGCGTCTTACAGCTTA........................................................... 24 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................................TAGATATTTCAATAATTTTTCGCGTCT.................................................................... 27 0 20 0.05 1 0 0 0 1 0
...................................................................................................................................................................TGCAATAATTTTTCGCGTCTTACAGCT............................................................. 27 1 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................ATTTTTCGCGTCTTACAGCT............................................................. 20 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................TTTCAATAATTTTTCGCGTCTTA.................................................................. 23 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................AACCCTTGGAGCAATAGATATTT...................................................................................... 23 0 20 0.05 1 0 1 0 0 0
............................................................................................................................................TGAACCCTTGGAGCAATAGATAT........................................................................................ 23 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

AGGTAAATATTAAAATCATATAATAGGCTATTTTTACTCTTCAGGGTATTCATTCATTTATTGGTCTGTGCGTTTATGAAATTCTTGACAAATTTGTTCATTCTTTCGATATCAGCTCTGACGAGCTGATGCTGTAGGGGACTTGGGAACCTCGTTATCTATAAAGTTATTAAAAAGCGCAGAATGTCGAATGTGCGTACACTTCAGAGATCGAGAATATAGAAGACTTTAGCTGCGCAAGTATGTATGCC
*********************************************************************.........((((((((.........................)))))........................)))************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V056
head
......................................................................................................................................................................................................ACACTTCAGAGATCGAGAATAT............................... 22 0 3 0.33 1 1 0 0
..........................................................................................................................................GGACTTGGGAACCTCGTTATCTAT......................................................................................... 24 0 20 0.05 1 0 1 0
...........................................................................................................................................................TATCTATAAAGTTATTAAAAAGCGCA...................................................................... 26 0 20 0.05 1 0 1 0
...................................................................................................................................................................................................................CGAGAATATAGAAGACTTTAGCTGC............... 25 0 20 0.05 1 0 1 0
..........................................................................................................CGATATCAGCTCTGACGAGCT............................................................................................................................ 21 0 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:1297588-1297838 + dmo_1350 TCCATTTATAATTTTAGTATA------TTATC---------------------------------------------CGA-T-------------------------------------------------------AAAAATGAGAAGTC----------------------------------CCA-T--------------------AAGTAAGTAAATAACCAGACACGC---------AAA----------------TACTTTA------------------------------------------------------------------------AGA--ACTGTTT----------------AAACAAGTAAG-AAAG----------------CTATAGTCGAGACTGCTCGACTACGACATCCCCTGAACCC----TTGGAGCAATAGAT-----------------------------------------------------------------------------------------------------------AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------CTTACAGCTTACACGC---ATGTGAAGTCTCTAGCTCTTATATCTTCTGAA-ATCG-----------ACGCGTTCATACATACGG
droVir3 scaffold_12855:6467617-6467886 - ATTTACAAGAATAAT---AAA------TTGTT----------------------GGTAATAAATATTAAGCATCTGTATA-TTTA-----------------------------------------------------------------------------------------------------------------------CTTAAAG----A-----------GACGGCCAAGAAAATTAAA-T----------------T-------------------------------------------------------------------------ACAAAA--TTAAATT----------------AAGCAAGTTAGAGGTT----------------CTATA--CGGGAGCTCCCGACCAGGGGATACCCTGAACCC----TCTTCT---------------------TCCAACACC-------------------------------------------------------------------------------------------------------------------AAATGCGAATATATA------------------------------------------------------------------------------CGCTATTCTAGAAGCTACATGTTAAGTTCGGTGACTCTAGCTCTTATTATTTACCAAAATTGCCAAAAAAAAATAGGGTTTCGATATAGAT
droGri2 scaffold_14624:828726-828966 + GCTATTTAATTTAATTA--TAATAGTGTTGCC---------------------------------------------CAA-TCTA---------------------------------------------A-------------------------------------------------------CAAAACAACGTTTCTTAATTGCG--------TAA------------------------------------------------------------------------------------------ACACAGCTGCGTAAAGTTAAATACTGAAACAAAATGCTAAAAA----------------TAACAAGTAA---GTG----------------CTGTAGTCGAGTGAGCTCGACTACGATTTAGCCTGAACCT----A-----------------------------------------------------------------GG-------------------------------------------T-GTTATTT-ATAT-----------TGA------------------------TAAA-----------------------------------------------------------------------------TTTCCCAATAAATTTTGCAC-CCAAATGTGAGCA-------------GGTCTGCAAG-TGCA-----------CTCCTTTCTTAT------
droWil2 scf2_1100000004949:2312794-2313059 - AACATTTATATTACTCA-----------------------------------------------------------ATAA----------------------------------------------------------------------------ACAAATTAATCAAATATAAATAAACATTCATA-T--------------------TACTGATATATTAAACTAACAAAT---------ATT----------------TAATTTG-----------------------------------------------------------------------------------AAAGCAATCGTTCGTT-ACAAAAGTAAC-GAAGTTATTGAGAAAAGTCACTGTTTGTGACTT-TGCCATTTGTATGGGAGCTAT--------------------------------------------------------------------------------------------------------------------------------------------ATG-----------------ATATAGTGGTGTGTGC------------------------------------------------------------------------------AGTATATACAAGCCTACATGCAAAATTTCAACTCTGTAGCTCTAATGGTCTAGGAG-GAGC-----------TTGCGTTGATCCAGACCG
dp5 Unknown_singleton_2278:632-743 - TGATTTTTTGGATG------------------ACAAAATATGTT----------AATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTTGTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGACGGAT-----------------------------------------------------------------------------------TTGAAATGTAGTTGCTCTAGCTCTTATAGTCTTTGAG-CACT-----------AGGCGCTGATAGGGACGG
droPer2 scaffold_3:387051-387178 - CAGCTTTTGCACTC---------------------------TAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG----------------ATATAGTTATACT-CTAAAATTTTCTGTTTTCTC-----------------------------------------GTATC----------------------------------T--------------------------------------------TTG-----------------------------------------------------------------AAATTGTGG--------------------------------------------------------A-------TGC-----CACAAATTTCGATGCTTTAGCTCTTATAGTCTTTGAG-CACG-----------AGGCGCTGATA------G
droAna3 scaffold_13280:1364114-1364255 - TATGGCAGCTATAG----GCA------GC------------TCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT----------------ATACAGTCGACCA----------------------ATCCCGTTCC----G--------ATACTTATATACTGCCTGCAACCAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATGTGTGTAAAGTTTCAACTCGATGGCTTTAAAA----CTGAA-AGAC-----------TAGTTTGCGTAGAAACAG
droBip1 scf7180000395526:10888-11014 - CAAGTACAATATAC-----------------------------CCT------------------------------AGAA-CTCTA--------CG------------------------------------AGTATAAAA--------A------------------------------------------------------CTCTAAC----G-----------GGCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTTT-------------------------------AAGTA-TAACA-------AAC----TACAAAATCTTATAGCTGTATCTTTTATAATCTCTGAA-ATCC-----------CCCAGTTTAT--------
droKik1 scf7180000302470:2231628-2231727 + TTAAGTAATTATTTT----------------------------CTT-------------------------------TTAGTT-TT--------AA--------------------------------------------AATGAAAATA------------------------------------------------------TTTTAGA----A-----------GGTAATCAGAAAATCCAAAAT----------------ATTTA------------------------------------------------------------------------AAA--TCTTTTA----------------AAACAAGAAAG-AAAG----------------CTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453714:2312-2532 - CATATATGAATTTG-----------------------------GTCCAAATTAT----------------------CGAA-A-------------------------------------------------------AAAATT------A---------------CCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT--ATAATAC----------------AATCAAAAA------------------------------------------------------------------------------------------------------ACAAAACATATTTTGTTATAAATTTTTTTAAGCCGAAATTAGCTAAATGAAATTTGAAATAAGCCAGATTTTAAG-C-TATA-TGCAT-----------TTCAAGTATTTTTCAAG---------------CTATTT-----CATT-----------------------------------------------------------TTA-AAATATGCTAAATCTAGCTTG------------------------AAATAAGCTAAA-ATGG-----------CAACAA-----------T
droEle1 scf7180000491028:3415214-3415438 - TTTATTTATATTATTTG--------------------------------------------------------------TGTT-TG--------CCATTGTTGAAAGTTTGGGAGTCTGTTACCTGAAATCAG------TAAC-------------------------------------------------------------------------------------------------AGGAAACGTGTTTTTGTACAAATA---------------------------------------------------------------------CTAAAACGAAA--TTAAATA----------------AAACAAGAAGG-AAGG----------------CTATAGTCGAGTT-CCCCGACTATTAGATACCCTTTACTC----A-----------------------------------------------------------------GC-------------------------------------------C-A---------------------------------------------------------------TCAA-----------------------------------------------------------GTA-GAAAAAACTAGAGTCAGCATGCCAAA-----------------------TCCCAAAT-ATCT-----------CGACCTTCATACA-----
droRho1 scf7180000769120:928-1155 - TCCCATATGTAACT----A------------------------GAT-------------------------------CAAGTT-T-------------------------------------CCTC--AGCGG------TAAC-------------------------------------------------------------------------------------------------AGTAAACT----------------TGTTA------------------------------------------------------------------------ATA--CCAAATA----------------AAACAAGAGAG-AACG----------------CTATAGTCAAGTG-CCTCAACTATTAGATT--------------------------------------------------------------------------------------------------------------AGGCCAATCGATAGGT-ATTGACG-AAACAAATATAT-ATCAATTAAAATTTTCA----------------TAATAGTA-----TCAAAACTGTGG--------------------------------------------------------------------------------CCACAGCTCTAGCTTTTATAGTTTCCGAG-ATCT-----------CAGCGTTCATACGGACAG
droBia1 scf7180000302164:4367-4629 + TCTACCATTTAAAT----GTA------TCCTC---------------------------------------------CGA-TTTA-------------------------------------AATT--ATTTT------TAAC-------------------------------------------------------------------------------------------------ATGTAGGT----------------GGG--------------------------------------------------------------------------TAA--TTAAAAA----------------AAACAAGGAAG-AACG----------------CTATAGTTGAGTG-CCCCGACTATCAGATACCCGTTACTC----A-----------------------------------------------------------------GCTTAAGGAAGCAAA---------------AGGATAATGAAGATAT-ATAAGCA---AAGAATATATA-----------------TTTTAGTGGGGAAGAC--------------------------------CA--------------------------------------------GGAAGACCAGAATCTACATGCCAAGTGTGAATATTCTAGCTCTTATAGTTTTCGAG-ATCT-----------CAGCGTTCATACGGACGG
droTak1 scf7180000415871:175668-175917 + ATTATTACTTTTTAC---------------------------------------------------------------AA-TTTA---------------------------------------------A-------------------------------------------------------TA-AACAAAATTAAAAAATTATATAATTAAGATATT---------------------------------------------------------------------------------------------------TAAAAATAAATTTTTA----------AACTAA----------------AAACAAAAGAG-AACG----------------TTATAGTCGAGTG-CCTCGACTATAAGATACCCGTTACTC----A-----------------------------------------------------------------GATAA--------------------------------------------TGGCG-T----------------------------------------------------------------TTGTGGGCGTGGCAATCTTGT-------------------------------GCGTA-AAAATCGCTAGATCTTTCTCGGAATATCTTAACATTCTAGCTTTCATAGTTTTCGAA-ATCT-----------CAGTGTTTATACGGACAG
droEug1 scf7180000408537:3296-3533 + ATACTATTCGATAA------------------ATGTAATATACCCT------------------------------TTTA-CTCATCGAGTGCC-G------------------------------------GGTATAAAGACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAT---------------AAATTAGGAAGA-AACG----------------CTATAGTCAAGTG-CCGCGACTATAAGATACCCGTTACTG----TTA----------------------------------------------------------------------------------------------------------TAC-ACAAT--------------------------------------------------------------T----------------------TTAAAATATTAATTTTGCTAGTGGATATTCACAACGCGCCACCTGTTGTCAGAGATAGCATGTTGAGTGAC---------GTACCTACAGTTCCTGAG-ATCT-----------CAGCGTTAATACG----G
dm3 chr2R:1609689-1609885 + ATAATTTTAGAATA-------------TTTC------------CTT------------------------------TCGA-CTTT----------------------------------------------------GAAAAAAAGAATTCCGTAAGGAAAATTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAA----------------AAAAAAGAGAG-AATG----------------ATATAGTTAAGTT-TTCCGACTATCAGATGCTCGTTACTC----A-----------------------------------------------------------------AA----------------------------------------------------------------------------ATTTCTA----------------AAAAT-----GGTT-----------------------------------------------------------------------------------CAAAAGTGTGGGCGTTCTAGCTTTTATAGTTCCTGAG-ATCT-----------CGACGTTCATACGCACTG
droSim2 x:19596272-19596485 - TTTTTCCATAACTGTTAT-----------------------------------------------------------TTA-T-------------------------------------------------------ATAAAAGTAAAGTC----------------------------------TTA--------------------------------------------------------------TTTATAAATAAATT---------------------------------------------------------------------TATAAGTAAAT--TTAAAAC----------------AAACGAGTGAG-AATG----------------CTGTAGTCGAGTT-GCCCGACTATCAGATACCCCGTACTC----A-----------------------------------------------------------------GG-------------------------------------------CAA-TCTTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTAGAATCTCTTTGCT------GAATCTGCTTGCCTTTAAAGTTCCTGAG-ATAT-----------CGACGTTCATACG----G
droSec2 scaffold_8:3245364-3245549 - GAGAGGTAACAAAT---------------------------------------------------------------------------------------------------------------------------------GAA---------------------------------------------------------------------AATAAACGAGTGGATTTGT---------AAA----------------GAGTTAGAAACGTTGTAACGATCAACGACGTTATTTTTGACGATAAAGGCAAAGCCGCTTGAAAC-----------------------AGA----------------AATCAGAAATC-A-------------------ATTTTTATTGATT-CCCCGACTATCAGATACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTTTATAGTTCCTGAG-ATCG-----------AGCCGCTTATAC------
droYak3 3R:16411739-16411951 + GTCGTTTATGGGTGCATTTTA------T-------------------------------------------------TAA-TTC---GAG--------------------------------CTGC--AGCGG------AGATGGGAACA------------------------------------------------------TTGGCTA----AG--------------------------------------------------------------------------------------------------------------------------TAAAT--AAGAGGA----------------AAACTAGAGAG-AACG----------------CTAAAGTCGAGTT-TCCCGACTATCAGATACCTTTTACTC----AGCTAGTGAAAGTG-----------------------------------------------------------------------------------------------------------CT-----------AACGAAAACCT----------------------------------------------------------------------------------------------------------------TTTGCTTGC------TCAAGTTTCTGGCTTATATAGTTTCTGAG-TTCG-----------AAGCGTTTATACGGACGG
droEre2 scaffold_4845:3635144-3635363 + TCCATTTTTATTTT-----------------------------TCT------------------------------TGAA-TATTA--------CA------------------------------------GGGATAAAAACGAGAATTCT---------------------------------------------------------------------------------------------A-T----------------CGC------------------------------------------------------------------------CAAAT--TCACATC----------------AAACAAGAGAG-AATG----------------CTGTAGGCGAGTT-CCCCGATTATCAGATACCCGTTACTC----A-----------------------------------------------------------------GCTAA--------------------------------------------TGTCA-CTAA-----------TGT------------------------CAGC-----------------------------------------------------------------------------CATGTCTCTAAAATCTGCACGCTCAATCTGAACTTTCTAGTTTTCATAGCTCCTGAG-ATCG-----------AGGCGTTCATACGGACAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCCATTTATAATTTTAGTATA------TTATC---------------------------------------------CGA-T-------------------------------------------------------AAAAATGAGAAGTC----------------------------------CCA-T--------------------AAGTAAGTAAATAACCAGACACGC---------AAA----------------TACTTTA------------------------------------------------------------------------AGA--ACTGTTT----------------AAACAAGTAAG-AAAG----------------CTATAGTCGAGACTGCTCGACTACGACATCCCCTGAACCC----TTGGAGCAATAGAT-----------------------------------------------------------------------------------------------------------AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------CTTACAGCTTACACGC---ATGTGAAGTCTCTAGCTCTTATATCTTCTGAA-ATCG-----------ACGCGTTCATACATACGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAT-----------------------------------------------------------------------------------------------------------AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------C....................................................................................26201.90383800000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAT-----------------------------------------------------------------------------------------------------------AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------CT...................................................................................26200.408800000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCTGAACCC----TTGGAGCA.......................................................................................................................................................................................................................................................................................................................................20200.357700000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAT-----------------------------------------------------------------------------------------------------------AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------.....................................................................................25200.357700000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATATCTTCTGAA-ATCG-----------ACGCG.............25200.255500000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG-----------ACGCGTTCATACATACGG21200.153000003
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTCTGAA-ATCG-----------ACGCGT............21200.153000003
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTTCGCG------------------------------------------------------------------------------------------T--------CTTACAGCTTACAC.......................................................................27200.102100100
..................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTCGAGACTGCTCGACT.....................................................................................................................................................................................................................................................................................................................................................................21200.102200000
..................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTCGAGACTGCTCGACTACGA.................................................................................................................................................................................................................................................................................................................................................................25200.102200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGAACCC----TTGGAGCAATAGAT-----------------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................23200.102200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------------------------------------------------------------------------AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------CT...................................................................................24200.102200000
..................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTCGAGACTGCTCGACTAC...................................................................................................................................................................................................................................................................................................................................................................23200.102200000
........................................................................................................................................................................................................................................................................................................................................................................................................................CGAGACTGCTCGACTACGA.................................................................................................................................................................................................................................................................................................................................................................19200.102200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAT-----------------------------------------------------------------------------------------------------------AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------C....................................................................................27200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-----------------------------------------------------------------------------------------------------------AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------..............................................................................................22200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TTGGAGCAATAGAT-----------------------------------------------------------------------------------------------------------AT-----------TTCAATAAT................................................................................................................................................................................................26200.051000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTTCGCG------------------------------------------------------------------------------------------T--------CTTACAGCTT...........................................................................22200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------CTTACAGCT............................................................................27200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------C....................................................................................21200.051000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTTCGCG------------------------------------------------------------------------------------------T--------CTTACAGCT............................................................................21200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------CTT..................................................................................23200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTTCGCG------------------------------------------------------------------------------------------T--------CTTACAGCTTA..........................................................................24200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAT-----------------------------------------------------------------------------------------------------------AT-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------CT...................................................................................27200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTCGCG------------------------------------------------------------------------------------------T--------CTTACAGCT............................................................................20200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------TTCAATAATTTTTCGCG------------------------------------------------------------------------------------------T--------CTTA.................................................................................23200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCC----TTGGAGCAATAGAT-----------------------------------------------------------------------------------------------------------AT-----------TT.......................................................................................................................................................................................................23200.051000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCC----TTGGAGCAATAGAT-----------------------------------------------------------------------------------------------------------AT-----------.........................................................................................................................................................................................................23200.051100000
droVir3
ATTTACAAGAATAAT---AAA------TTGTT----------------------GGTAATAAATATTAAGCATCTGTATA-TTTA-----------------------------------------------------------------------------------------------------------------------CTTAAAG----A-----------GACGGCCAAGAAAATTAAA-T----------------T-------------------------------------------------------------------------ACAAAA--TTAAATT----------------AAGCAAGTTAGAGGTT----------------CTATA--CGGGAGCTCCCGACCAGGGGATACCCTGAACCC----TCTTCT---------------------TCCAACACC-------------------------------------------------------------------------------------------------------------------AAATGCGAATATATA------------------------------------------------------------------------------CGCTATTCTAGAAGCTACATGTTAAGTTCGGTGACTCTAGCTCTTATTATTTACCAAAATTGCCAAAAAAAAATAGGGTTTCGATATAGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTAGAAGCTACATGTTA...................................................................2150.201001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCGACCAGGGGATACCCTGAACCC----TCTT...........................................................................................................................................................................................................................................................................................................................................3250.201000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTAGAGGTT----------------CTAAG--....................................................................................................................................................................................................................................................................................................................................................................................1990.111000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGAACCC----TCTTCT---------------------TC..................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTATTTACCAAAATTGCC...........................25200.051000000000000000000000000000000100000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTATTTACCAAAATTGCCA..........................26200.051000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTCTTATTATTTACCAAAATTGCC...........................27200.051000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCTCTTATTATTTACCAAAATTG.............................27200.051000000000000000000000000000000000000100000000000000000000000000
droGri2
GCTATTTAATTTAATTA--TAATAGTGTTGCC---------------------------------------------CAA-TCTA---------------------------------------------A-------------------------------------------------------CAAAACAACGTTTCTTAATTGCG--------TAA------------------------------------------------------------------------------------------ACACAGCTGCGTAAAGTTAAATACTGAAACAAAATGCTAAAAA----------------TAACAAGTAA---GTG----------------CTGTAGTCGAGTGAGCTCGACTACGATTTAGCCTGAACCT----A-----------------------------------------------------------------GG-------------------------------------------T-GTTATTT-ATAT-----------TGA------------------------TAAA-----------------------------------------------------------------------------TTTCCCAATAAATTTTGCAC-CCAAATGTGAGCA-------------GGTCTGCAAG-TGCA-----------CTCCTTTCTTAT------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AACATTTATATTACTCA-----------------------------------------------------------ATAA----------------------------------------------------------------------------ACAAATTAATCAAATATAAATAAACATTCATA-T--------------------TACTGATATATTAAACTAACAAAT---------ATT----------------TAATTTG-----------------------------------------------------------------------------------AAAGCAATCGTTCGTT-ACAAAAGTAAC-GAAGTTATTGAGAAAAGTCACTGTTTGTGACTT-TGCCATTTGTATGGGAGCTAT--------------------------------------------------------------------------------------------------------------------------------------------ATG-----------------ATATAGTGGTGTGTGC------------------------------------------------------------------------------AGTATATACAAGCCTACATGCAAAATTTCAACTCTGTAGCTCTAATGGTCTAGGAG-GAGC-----------TTGCGTTGATCCAGACCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACTT-TGCCATTTGTATGGGAG............................................................................................................................................................................................................................................................................................................................................................21200.10200200
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTGTAGCTCTAATGGT.........................................20130.08100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGAG-GAGC-----------TTGCGTTGATC.......21150.07100001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTAGCTCTAATGGTCTA......................................21160.06110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-GAGC-----------TTGCGTTGATCCAG....21180.06100100
.................................................................................................................................................................................................................................................................................................................................................................................................TTATTGAGAAAAGTCACTGTTTGTGA.................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
dp5
TGATTTTTTGGATG------------------ACAAAATATGTT----------AATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTTGTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGACGGAT-----------------------------------------------------------------------------------TTGAAATGTAGTTGCTCTAGCTCTTATAGTCTTTGAG-CACT-----------AGGCGCTGATAGGGACGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTTGTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGACGG............................................................................................................................................................2011.0010000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGGAT-----------------------------------------------------------------------------------TTGAAATGTAG............................................................1931.0030000000030
........................................TGTT----------AATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTTGTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C....................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAT-----------------------------------------------------------------------------------TTGAAATGTAGTTGT........................................................2130.6720000000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTCTTTGAG-CACT-----------AGGCGCTGA.........26200.4590000000900
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGACGGAT-----------------------------------------------------------------------------------TTGAAATGTAG............................................................2130.3310000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATAGTCTTTGAG-CACT-----------..................20200.1530300000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGAG-CACT-----------AGGCGCTGAT........22200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG-CACT-----------AGGCGCTGATAG......20200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGAG-CACT-----------AGGCGCTG..........20200.0510000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTCTTTGAG-CACT-----------AGGC..............22200.0510000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAG-CACT-----------AGGCGCTGATAGGG....24200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG-CACT-----------AGGCGCTGATAGGGA...23200.0510000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAG-CACT-----------AGGCGCTGATA.......21200.0510100000000
droPer2
CAGCTTTTGCACTC---------------------------TAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG----------------ATATAGTTATACT-CTAAAATTTTCTGTTTTCTC-----------------------------------------GTATC----------------------------------T--------------------------------------------TTG-----------------------------------------------------------------AAATTGTGG--------------------------------------------------------A-------TGC-----CACAAATTTCGATGCTTTAGCTCTTATAGTCTTTGAG-CACG-----------AGGCGCTGATA------GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTCTTTGAG-CACG-----------AGGCGCTG..........2550.201010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTC-----------------------------------------GTATC----------------------------------T--------------------------------------------TTG-----------------------------------------------------------------AAATTGTGG--------------------------------------------------------A-------T..............................................................................24200.102020000
.......TGCACTC---------------------------TAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG----------------ATATAGTT...................................................................................................................................................................................................................................................................................................................................................................................21170.061010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------GTATC----------------------------------T--------------------------------------------TTG-----------------------------------------------------------------AAATTGTGG--------------------------------------------------------A-------TGC-----.......................................................................24200.051001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------GTATC----------------------------------T--------------------------------------------TTG-----------------------------------------------------------------AAATTGTGG--------------------------------------------------------A-------TG.............................................................................22200.051010000
droAna3
TATGGCAGCTATAG----GCA------GC------------TCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT----------------ATACAGTCGACCA----------------------ATCCCGTTCC----G--------ATACTTATATACTGCCTGCAACCAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATGTGTGTAAAGTTTCAACTCGATGGCTTTAAAA----CTGAA-AGAC-----------TAGTTTGCGTAGAAACAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA-AGAC-----------TAGTTTGCGTAGAAAC..24200.153030000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA-AGAC-----------TAGTTTGCGTAGAAACA.25200.102200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----CTGAA-AGAC-----------TAGTTTGCGTAGAAAC..27200.102020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGATGGCTTTAAAA----C......................................19160.061010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCAACTCGATGGCT.................................................18160.061100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA----CTGAA-AGAC-----------TAGTTTGC..........21200.051100000
droBip1
CAAGTACAATATAC-----------------------------CCT------------------------------AGAA-CTCTA--------CG------------------------------------AGTATAAAA--------A------------------------------------------------------CTCTAAC----G-----------GGCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTTT-------------------------------AAGTA-TAACA-------AAC----TACAAAATCTTATAGCTGTATCTTTTATAATCTCTGAA-ATCC-----------CCCAGTTTAT--------SizeHit CountTotal NormTotal
No Reads
droKik1
TTAAGTAATTATTTT----------------------------CTT-------------------------------TTAGTT-TT--------AA--------------------------------------------AATGAAAATA------------------------------------------------------TTTTAGA----A-----------GGTAATCAGAAAATCCAAAAT----------------ATTTA------------------------------------------------------------------------AAA--TCTTTTA----------------AAACAAGAAAG-AAAG----------------CTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CATATATGAATTTG-----------------------------GTCCAAATTAT----------------------CGAA-A-------------------------------------------------------AAAATT------A---------------CCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT--ATAATAC----------------AATCAAAAA------------------------------------------------------------------------------------------------------ACAAAACATATTTTGTTATAAATTTTTTTAAGCCGAAATTAGCTAAATGAAATTTGAAATAAGCCAGATTTTAAG-C-TATA-TGCAT-----------TTCAAGTATTTTTCAAG---------------CTATTT-----CATT-----------------------------------------------------------TTA-AAATATGCTAAATCTAGCTTG------------------------AAATAAGCTAAA-ATGG-----------CAACAA-----------TSizeHit CountTotal NormTotal
No Reads
droEle1
TTTATTTATATTATTTG--------------------------------------------------------------TGTT-TG--------CCATTGTTGAAAGTTTGGGAGTCTGTTACCTGAAATCAG------TAAC-------------------------------------------------------------------------------------------------AGGAAACGTGTTTTTGTACAAATA---------------------------------------------------------------------CTAAAACGAAA--TTAAATA----------------AAACAAGAAGG-AAGG----------------CTATAGTCGAGTT-CCCCGACTATTAGATACCCTTTACTC----A-----------------------------------------------------------------GC-------------------------------------------C-A---------------------------------------------------------------TCAA-----------------------------------------------------------GTA-GAAAAAACTAGAGTCAGCATGCCAAA-----------------------TCCCAAAT-ATCT-----------CGACCTTCATACA-----SizeHit CountTotal NormTotal
No Reads
droRho1
TCCCATATGTAACT----A------------------------GAT-------------------------------CAAGTT-T-------------------------------------CCTC--AGCGG------TAAC-------------------------------------------------------------------------------------------------AGTAAACT----------------TGTTA------------------------------------------------------------------------ATA--CCAAATA----------------AAACAAGAGAG-AACG----------------CTATAGTCAAGTG-CCTCAACTATTAGATT--------------------------------------------------------------------------------------------------------------AGGCCAATCGATAGGT-ATTGACG-AAACAAATATAT-ATCAATTAAAATTTTCA----------------TAATAGTA-----TCAAAACTGTGG--------------------------------------------------------------------------------CCACAGCTCTAGCTTTTATAGTTTCCGAG-ATCT-----------CAGCGTTCATACGGACAGSizeHit CountTotal NormTotal
No Reads
droBia1
TCTACCATTTAAAT----GTA------TCCTC---------------------------------------------CGA-TTTA-------------------------------------AATT--ATTTT------TAAC-------------------------------------------------------------------------------------------------ATGTAGGT----------------GGG--------------------------------------------------------------------------TAA--TTAAAAA----------------AAACAAGGAAG-AACG----------------CTATAGTTGAGTG-CCCCGACTATCAGATACCCGTTACTC----A-----------------------------------------------------------------GCTTAAGGAAGCAAA---------------AGGATAATGAAGATAT-ATAAGCA---AAGAATATATA-----------------TTTTAGTGGGGAAGAC--------------------------------CA--------------------------------------------GGAAGACCAGAATCTACATGCCAAGTGTGAATATTCTAGCTCTTATAGTTTTCGAG-ATCT-----------CAGCGTTCATACGGACGGSizeHit CountTotal NormTotal
No Reads
droTak1
ATTATTACTTTTTAC---------------------------------------------------------------AA-TTTA---------------------------------------------A-------------------------------------------------------TA-AACAAAATTAAAAAATTATATAATTAAGATATT---------------------------------------------------------------------------------------------------TAAAAATAAATTTTTA----------AACTAA----------------AAACAAAAGAG-AACG----------------TTATAGTCGAGTG-CCTCGACTATAAGATACCCGTTACTC----A-----------------------------------------------------------------GATAA--------------------------------------------TGGCG-T----------------------------------------------------------------TTGTGGGCGTGGCAATCTTGT-------------------------------GCGTA-AAAATCGCTAGATCTTTCTCGGAATATCTTAACATTCTAGCTTTCATAGTTTTCGAA-ATCT-----------CAGTGTTTATACGGACAGSizeHit CountTotal NormTotal
No Reads
droEug1
ATACTATTCGATAA------------------ATGTAATATACCCT------------------------------TTTA-CTCATCGAGTGCC-G------------------------------------GGTATAAAGACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAT---------------AAATTAGGAAGA-AACG----------------CTATAGTCAAGTG-CCGCGACTATAAGATACCCGTTACTG----TTA----------------------------------------------------------------------------------------------------------TAC-ACAAT--------------------------------------------------------------T----------------------TTAAAATATTAATTTTGCTAGTGGATATTCACAACGCGCCACCTGTTGTCAGAGATAGCATGTTGAGTGAC---------GTACCTACAGTTCCTGAG-ATCT-----------CAGCGTTAATACG----GSizeHit CountTotal NormTotal
No Reads
dm3
ATAATTTTAGAATA-------------TTTC------------CTT------------------------------TCGA-CTTT----------------------------------------------------GAAAAAAAGAATTCCGTAAGGAAAATTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAA----------------AAAAAAGAGAG-AATG----------------ATATAGTTAAGTT-TTCCGACTATCAGATGCTCGTTACTC----A-----------------------------------------------------------------AA----------------------------------------------------------------------------ATTTCTA----------------AAAAT-----GGTT-----------------------------------------------------------------------------------CAAAAGTGTGGGCGTTCTAGCTTTTATAGTTCCTGAG-ATCT-----------CGACGTTCATACGCACTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGTTCTAGCTTTTATAG..........................................211157.00157000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000026000000000000000016001600000000000000000000000002120000000000000000000000800000000000030000700000000000000000000011000000000000000000000893000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTTCCTGAG-ATCT-----------CGACGT............2620104.5520910000000000000000000000150000000000000300033101103902001280310900000000000000000000000000000001200000000000000000000000000000000000000000000000000000001001793991350000040000000000000000000000000000000000002147024640085117040001200200110400005418030002240900000000125000000000000000000000000000000000000000000000000089000000069104012000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGTGTGGGCGTTCTAGC..................................................21148.004800000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000000000000000000000000000000000000001030000000000000000000000400000000000060000100000000000000000000000000000000000000000000270100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGACTATCAGATGCTCGT........................................................................................................................................................................................................................................................................................................................................................21137.003700000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000430000000000000000000500000000000000000000000001000000000000000010000000300000000000010000000000000000000000000010000000000000000000000121000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTTCCTGAG-ATCT-----------CGACG.............252036.15723000000000000000000000000000000000000003000704000000000000000000000000000000000000000000000000000400000000000000000000000000000000000600100000900000124600324204300000000000000000000000001000000018000170030000000000000000007207028910120121030000000003000000000000000000000000000000000000000000000000022000003301700000000030000000000000000900000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTTCCTGAG-ATCT-----------CGACGTT...........272035.3070600000000000000000000000100000000000010300330000000010000000000000000000000000000001000000000000000000000000000000000000000000001000020000000220011400005011000020000000000000000000000000000000000920212100020000000000000000040007520084000000000001200000000000000000000000000000000000000000000000000000000014210000000111900000000000000953420000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATCAGATGCTCGTTACT....................................................................................................................................................................................................................................................................................................................................................21134.003400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000020000000000000000000000000000000000000000000000000274000000000000000000000000000
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------CAAAAGTGTGGGCGTTCTAGAA.................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAA----------------AAAAAAGAGAG-AAT............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTT-TTCCGACTATCAGATGCTCGT........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGCTCGTTACTC----A-----------------------------------------------------------------A............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................AGAGAG-AATG----------------ATATAGTTAAG................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................TTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAA----------------AAAAAAGAGAG-AA.............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG-ATCT-----------CGACGTTCATACGCAC..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-----------CGACGTTCATACGCACT.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGTGGGCGTTCTAGCTTTTAT............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................AAAAAAAGAATTCCGTAAGGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGATGCTCGTTACTC----A-----------------------------------------------------------------AA----------------------------------------------------------------------------AT.............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGCTCGTTACTC----A-----------------------------------------------------------------AA----------------------------------------------------------------------------ATT............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGTTCTAGCTTTTATAGT.........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AA----------------AAAAAAGAGAG-AATG----------------ATATAA.....................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGTGTGGGCGTTCTAGA..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................ATG----------------ATATAGTTAAGTT-TTCC.........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------CAAAAGTGTGGGCGTTCT.....................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................A----------------AAAAAAGAGAG-AATG----------------ATATA......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATCAGATGCTCGTTACTA----...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TAA----------------AAAAAAGAGAG-AATG----------------ATATAGA....................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCTAGCTTTTATAGTTC.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAA----------------AAAAAAGAGAG-AATG----------------A..........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAG-ATCT-----------CGACGTTCATACGCA...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTCGTTACTC----A-----------------------------------------------------------------AA----------------------------------------------------------------------------ATTTCTA----------------AAAA....................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AAAGAGAG-AATG----------------ATATAGTTAAGTT-T............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGAG-ATCT-----------CGACGTTCATACGCAC..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATCAGATGCTCGTTAC.....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG-ATCT-----------CGACGTTCATACGCA...2311.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCGTTCTAGCTTTTA.............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAGTT-TTCCGACTATCAGATGC............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGTGTGGGCGTTCTAGCTTTTA.............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TCCGTAAGGAAAATTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTT-TTCCGACTATCAGAA..............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGTGGGCGTTCTAG...................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AAAAGAGAG-AATG----------------ATATAGTTT..................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGTGGGCGTTCTAGCTTT...............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGGGCGTTCTAGCT.................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------CAAAAGTGTGGGCGTTCTAGCTTTTA.............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGACTATCAGATGCTCGTTACT....................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAATTTTAGAATA-------------TTTC------------CTT------------------------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGAGAG-AATG----------------ATATAG.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................CTT------------------------------TCGA-CTTT----------------------------------------------------GAAAAAAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................T----------------------------------------------------GAAAAAAAGAATTCCGTAAGGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACTATCAGATGCTCGT........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------------------------------------------------------------------CAAAAGTGTGGGCGTTC......................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-----------------------------------------------------------------------------------CAAAAGTGTGGGCGTTCTAGCT.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACTATCAGATGCTCGTTACT....................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAGAG-AATG----------------ATATAG.....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGTTAAGTT-TTCCGA.......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAG-ATCT-----------CGACGTTCATACGCACTT2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATGCTCGTTACTC----A-----------------------------------------------------------------AA----------------------------------------------------------------------------AT.............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAG-ATCT-----------CGACGTTCATACGCACT.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTGGGCGTTCTAGCTTTTATAG..........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TG----------------ATATAGTTAAGTT-TTCCG........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTTTTCCATAACTGTTAT-----------------------------------------------------------TTA-T-------------------------------------------------------ATAAAAGTAAAGTC----------------------------------TTA--------------------------------------------------------------TTTATAAATAAATT---------------------------------------------------------------------TATAAGTAAAT--TTAAAAC----------------AAACGAGTGAG-AATG----------------CTGTAGTCGAGTT-GCCCGACTATCAGATACCCCGTACTC----A-----------------------------------------------------------------GG-------------------------------------------CAA-TCTTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTAGAATCTCTTTGCT------GAATCTGCTTGCCTTTAAAGTTCCTGAG-ATAT-----------CGACGTTCATACG----GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTCGAGTT-GCCCGACTATCAGA...............................................................................................................................................................................................................................................................................................................................................................2631.33400000002020000000
.................................................................................................................................................AAAGTC----------------------------------TTA--------------------------------------------------------------TTTATAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TG----------------CTGTAGTCGAGTT-GCCCGACT.....................................................................................................................................................................................................................................................................................................................................................................2331.00300000001002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCTTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTAG................................................................................2621.00200000002000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCT------GAATCTGCTTGCCTTTAAAG..........................................2711.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GAG-AATG----------------CTGTAGTCGAGTT-G............................................................................................................................................................................................................................................................................................................................................................................2150.80401000000001002000
...........................................................................................................................................................................................................................................................................................................................................................................................G-AATG----------------CTGTAGTCGAGTT-GCCCGAC......................................................................................................................................................................................................................................................................................................................................................................2530.67200000001001000000
.........................................................................................................................................................................................................................................................................................................................................................................................GAG-AATG----------------CTGTAGTCGAGTT-GCCCGAC......................................................................................................................................................................................................................................................................................................................................................................2730.67200000001010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCTTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTC...................................................................................2320.50100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCTTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTA.................................................................................2520.50100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCTTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTAGA...............................................................................2720.50100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAG-ATAT-----------CGACGTTCATAC......2380.50400000400000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TG----------------CTGTAGTCGAGTT-GCCCGA.......................................................................................................................................................................................................................................................................................................................................................................2140.50200000001001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTT-GCCCGACTATCAGATACC...........................................................................................................................................................................................................................................................................................................................................................2650.40200000000200000000
..............................................................................................................................................................................................................................................................................................................................................................................................ATG----------------CTGTAGTCGAGTT-GCCCGACA.....................................................................................................................................................................................................................................................................................................................................................................2430.33100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................ATG----------------CTGTAGTCGAGTT-GCCCGACT.....................................................................................................................................................................................................................................................................................................................................................................2430.33100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................AATG----------------CTGTAGTCGAGTT-GCCCGAC......................................................................................................................................................................................................................................................................................................................................................................2430.33100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTCGAGTT-GCCCGACTATCAGC...............................................................................................................................................................................................................................................................................................................................................................2630.33100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................ATG----------------CTGTAGTCGAGTT-GCCCGACTATC..................................................................................................................................................................................................................................................................................................................................................................2730.33100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTCGAGTT-GCCCGACT.....................................................................................................................................................................................................................................................................................................................................................................2030.33100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................TG----------------CTGTAGTCGAGTT-GCCCGACTATC..................................................................................................................................................................................................................................................................................................................................................................2630.33100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................G-AATG----------------CTGTAGTCGAGTT-GC...........................................................................................................................................................................................................................................................................................................................................................................2040.25100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................G-AATG----------------CTGTAGTCGAGTT-GCCCGA.......................................................................................................................................................................................................................................................................................................................................................................2440.25100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCGAGTT-GCCCGACTATCAGA...............................................................................................................................................................................................................................................................................................................................................................2480.25200000000020000000
.........................................................................................................................................................................................................................................................................................................................................................................................GAG-AATG----------------CTGTAGTCGAGTT-GCCCGA.......................................................................................................................................................................................................................................................................................................................................................................2640.25100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCTTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-T..........................................................................................1640.25100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................AATG----------------CTGTAGTCGAGTT-GCCCGA.......................................................................................................................................................................................................................................................................................................................................................................2340.25100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCTGAG-ATAT-----------CGACGTT...........2350.20100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCTGAG-ATAT-----------CGACGTTCATA.......2750.20100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCTGAG-ATAT-----------CGACGTTCATA.......2570.14100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTT-GCCCGACTATCAGATA.............................................................................................................................................................................................................................................................................................................................................................2480.13100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGAGTT-GCCCGACTA....................................................................................................................................................................................................................................................................................................................................................................1890.11100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGAG-ATAT-----------CGACGT............19130.08100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAG-ATAT-----------CGACGTT...........18130.08100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-ATAT-----------CGACGTTCATACG----G21130.08110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATAT-----------CGACGTTCAT........15150.07100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................T-GCCCGACTATCAGAT..............................................................................................................................................................................................................................................................................................................................................................16150.07100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAG-ATAT-----------CGACGT............15180.06100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTAGAATC............................................................................25200.05100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................G-AATG----------------CTGTAGTCGAGT...............................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTAGAAT.............................................................................20200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCT..................................................................................15200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTAGAATA............................................................................27200.05100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTAGAATCT...........................................................................28200.05100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTA.................................................................................22200.05100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTC.....................................................................................17200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGC-----------T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTAGAA..............................................................................25200.05100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------------GCGTC-TTTGTCTCTAGAATCT...........................................................................22200.05100100000000000000
droSec2
GAGAGGTAACAAAT---------------------------------------------------------------------------------------------------------------------------------GAA---------------------------------------------------------------------AATAAACGAGTGGATTTGT---------AAA----------------GAGTTAGAAACGTTGTAACGATCAACGACGTTATTTTTGACGATAAAGGCAAAGCCGCTTGAAAC-----------------------AGA----------------AATCAGAAATC-A-------------------ATTTTTATTGATT-CCCCGACTATCAGATACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTTTATAGTTCCTGAG-ATCG-----------AGCCGCTTATAC------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTTCCTGAG-ATCG-----------AG................22160.0610001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATAGTTCCTGAG-ATCG-----------AG................21180.0610001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATAGTTCCTGAG-ATCG-----------A.................20200.0510100
droYak3
GTCGTTTATGGGTGCATTTTA------T-------------------------------------------------TAA-TTC---GAG--------------------------------CTGC--AGCGG------AGATGGGAACA------------------------------------------------------TTGGCTA----AG--------------------------------------------------------------------------------------------------------------------------TAAAT--AAGAGGA----------------AAACTAGAGAG-AACG----------------CTAAAGTCGAGTT-TCCCGACTATCAGATACCTTTTACTC----AGCTAGTGAAAGTG-----------------------------------------------------------------------------------------------------------CT-----------AACGAAAACCT----------------------------------------------------------------------------------------------------------------TTTGCTTGC------TCAAGTTTCTGGCTTATATAGTTTCTGAG-TTCG-----------AAGCGTTTATACGGACGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TCCATTTTTATTTT-----------------------------TCT------------------------------TGAA-TATTA--------CA------------------------------------GGGATAAAAACGAGAATTCT---------------------------------------------------------------------------------------------A-T----------------CGC------------------------------------------------------------------------CAAAT--TCACATC----------------AAACAAGAGAG-AATG----------------CTGTAGGCGAGTT-CCCCGATTATCAGATACCCGTTACTC----A-----------------------------------------------------------------GCTAA--------------------------------------------TGTCA-CTAA-----------TGT------------------------CAGC-----------------------------------------------------------------------------CATGTCTCTAAAATCTGCACGCTCAATCTGAACTTTCTAGTTTTCATAGCTCCTGAG-ATCG-----------AGGCGTTCATACGGACAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAG-ATCG-----------AGGCGTTCATACGG....25200.3570000007
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAG-ATCG-----------AGGCGTTCATACGGA...26200.1020000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGATACCCGTTACTC----A-----------------------------------------------------------------GC...........................................................................................................................................................................................................................................................................21200.0510000010

Generated: 05/18/2015 at 12:17 AM