dmo_135

Name	Class	Family	Strand
Gypsy6-I_Dmoj-int	LTR	Gypsy	+

GTGGATTCCCCGGTCATTGATGACGTGGCCCAGATAGGTAATACTTTTCCTGAAGAACGCGCATTTGTCTGGGTTGAGCCTCAGGTTGGCCTCACGGAGACGGCGGAATACATCTCGCAAGACTCGCATGTGCTCCTCCAGGGTCGCGGCTACCACCACGATGTCATCTAGGTAGGCGAATGCTTATGGTTC *********************************..((..((((..(((((.((...((((((..((((....((((.......((.(((((.....)).))).))......))))..))))....))))))..)).)))))....)).))..))**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo	V049 head	V041 embryo
......................................................................................................................AAGACTCGCATGTGCTCCTCCAG...................................................	23	0	9	3.56	32	29	0	2	0	1
..................................................TGAAGAACGCGCATTTGTCTGGGTT.....................................................................................................................	25	0	5	3.00	15	0	15	0	0	0
.........CGGGTAATTGATGACGTGGCCG.................................................................................................................................................................	22	3	1	1.00	1	0	0	0	1	0
......................................................................................................................AAGACTCGCATGTGCTCCTCCAGGG.................................................	25	0	1	1.00	1	1	0	0	0	0
......................................................................................................................AAGACTCGCATGTGCTCCTCCA....................................................	22	0	11	0.73	8	7	0	0	0	1
................................................................................................................TCTCGCAAGACTCGCATGTGCTCCTC......................................................	26	0	2	0.50	1	0	0	1	0	0
..................................................TGAAGAACGCGCATTTGTCTGGGTTG....................................................................................................................	26	0	5	0.40	2	1	1	0	0	0
.........................TGGCCCAGATAGGTAATACTTTTCC..............................................................................................................................................	25	0	9	0.22	2	2	0	0	0	0
..................................................TGAAGAACGCGCATTTGTCTGGGT......................................................................................................................	24	0	5	0.20	1	0	1	0	0	0
......................................................................................................................AAGACTCGCATGTGCTCCTCC.....................................................	21	0	11	0.18	2	1	0	1	0	0
...................................................................................................................CGCAAGACTCGCATGTGCTCCTC......................................................	23	0	6	0.17	1	1	0	0	0	0
................................................................................TCAGGTTGGCCTCACGGAGACGGC........................................................................................	24	0	6	0.17	1	0	1	0	0	0
...............................................................................................................................................TCGCGGCTACCACCACGATGTCATC........................	25	0	8	0.13	1	0	0	1	0	0
..................................................TAAAGAAGGCGCATTTGTCTGGGTTG....................................................................................................................	26	2	8	0.13	1	0	0	0	0	1
......................................................................................................................AAGACTCGCATGTGCTCCTCCATC..................................................	24	2	11	0.09	1	1	0	0	0	0
.....................................................................TGGTTTGAGCCTCCGTTTGG.......................................................................................................	20	3	11	0.09	1	0	1	0	0	0
.......................................................................................................................AGACTCGCATGTGCTCCTCCA....................................................	21	0	11	0.09	1	1	0	0	0	0
......................................................................................................................AAGACTCGCATGTGCTCCT.......................................................	19	0	12	0.08	1	0	0	1	0	0
..............................................TTCCTGAAGAAGGCGCATTTGTC...........................................................................................................................	23	1	12	0.08	1	1	0	0	0	0
........................................................................................................GGAATACATCGCGCAGGT......................................................................	18	3	20	0.05	1	0	1	0	0	0

CACCTAAGGGGCCAGTAACTACTGCACCGGGTCTATCCATTATGAAAAGGACTTCTTGCGCGTAAACAGACCCAACTCGGAGTCCAACCGGAGTGCCTCTGCCGCCTTATGTAGAGCGTTCTGAGCGTACACGAGGAGGTCCCAGCGCCGATGGTGGTGCTACAGTAGATCCATCCGCTTACGAATACCAAG **********************************..((..((((..(((((.((...((((((..((((....((((.......((.(((((.....)).))).))......))))..))))....))))))..)).)))))....)).))..))*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body
................................................................................................................................................GCGCCGATGGTGGTGCTACAG...........................	21	0	8	0.25	2	1	1	0
..............................................................................................................................................CAGCGCCGATGGTGGTGCTACAG...........................	23	0	8	0.13	1	1	0	0
.................................................................................................................................................CGCCGATGGTGGTGCTACAG...........................	20	0	8	0.13	1	1	0	0
........................CACCGGGTCTATCCATTATGAAAAGGACT...........................................................................................................................................	29	0	9	0.11	1	1	0	0
.ACCTTAGGGGCCAGTCATTA...........................................................................................................................................................................	20	3	9	0.11	1	0	0	1
...................................TCCATTATGAAAAGGATTTC.........................................................................................................................................	20	1	10	0.10	1	0	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_1990:6869-7060 -	dmo_135	GTGGATTCCCCGGTCATTGATGACGTGGCCCAGATAGGTAATACTTTTCCTGAAGAACGCGCATTTGTCTGGGTTGAGCCTCAGGTTGGCCTCACGGAGACGGCGGAATACATCTCGCAAGACTCGCATGTGCTCCTCCAGGGTCGCGGCTACCACCACGATGTCATCTAGGTAGGCGAATGCTTAT---GGTTC
droVir3	scaffold_12958:218679-218868 +		ACGTATTCTTT--CCACAAGTGACATGTCCCAGGTAGACCAGCCTCTCCCTGAAGAAGCTGCACTTGTTTCTATTGAGCCTGAGATTGGCCGCCCTTAAACGGCGGAATACCGTCCTCAAATTCTTCACCAGCTCCTCTTTCTTTGCCCGTATTACCACGATATCGTCGAGGTAAGCTTATGCATGT---GGCTC
droGri2	scaffold_8248:1066-1260 -		GCGTATCCCTTCTTCGGTCACCTGATGGCCAAGGTATTTAAGTTCCGTTTTGAAGAAGTCGCACTTGTCCACATTGATCCTCAGGTTCGATACTCGCAACCGTCGGAACACTTCTCGCAAGTTGTGCATGTGTTCCTCGCGCTTATTCCCGATCACAATGATGTCATCCAAATATGCAAAGGAATGCTTTTGTTT
droWil2	scf2_1100000004146:697-888 +		ATGGATACCATCCTCACTGATGACATGACCTAGAAATTGGATCCGCTTCTTGAAGAAACGACATTTGTCTCGGTTGATCCTTAAATTGGCTTCTCGTAGACGTCGGAAGACTTCAAGCAGGTGTGAGAGGTGTTCCTCGAGCGTCTTTCCGATTACGATAATATCGTCTAGGTAGGCGAAGGCATGT---GGTTC
dp5	Unknown_group_371:9800-9991 -		GTGTATACCCTGCTCACTAATGACATGTCCCAGGTATACGATGCTTTTCTGGAAGAAGCTGCATTTCTTTTGGTTCAATCTTAGATTTGCTTCCCGTAGTCTCCGGAACACCTCTCGCATATGGTCGACGTGTTGCTCCAACGCCGCTCCGATGACAATAATGTCATCAAGGTAAGCGAATGCGTTG---GGTTC
droPer2	scaffold_542:7388-7579 +		GTGTATACCCCGCTCACTAATGACATGTCCCAGATATACGATGCTTTTCTGGAAAAAGCTGCATTTCTTTTGGTTTAATCTTAGATTGGCTTCCCGCAGTCTTCGGAAAACCTCTCGCAGATGGTCGACGTGTTCTTCCAGTGTCGCTCCGATGACAATGATGTCGTCGAGGTAAGCAAAGGCGTTG---GGTTC
droAna3	scaffold_3825:10973-11164 +		GCCAATTCCCTGACTCGTCATCCAGTGGCCCAGGTATAATAACTCTTCCCTGAAGAAATGGCACTAGTCCGTGTTTATTCTTAAGTTTGCCTCTTTCAGTCTACGGAATACTTCCTTAAAATTCGCCATGTGCACTTCCGTTGTGCGTCCAATCACGATGATGTCATCCTGATACGTAAATGCGTGC---GGATC
droBip1	scf7180000395602:1944-2135 -		TCCGATCCCCTGGCTTGTTATCCGGTGGCCCAGGTAGAGCAGCTCCTGCCTGAAGAAATGACACTTTTCCGTACTTATCCGCAGGTTTGCCGCTCTCAACCTCCTGAATACCTCTTGTAGATTCCGCATATGCTCCTCCTTGGTGCGTCCGATCACTATGATGTCATCCTGATACGCGAATGCGTGT---GGAGC
droKik1	scf7180000297786:16610-16801 -		GTGGATACCTTGGTCGCTGATCACGTGTCCCAGATAGGCTATCTTCCTCTTGAAGAACGAGTACTTCTCCTGGTTGATCCGCAGGTTGGCTCTCCTTAGCCGTTGGAACACTTTGCGTAGGTTCTCCATGTGTTCATCGAGACTCGCTCCGATGACGATGATGTCATCGAGGTACGCGAATGCGTGT---GGGTC
droFic1	scf7180000454034:5309-5500 -		CTGTATCCCGGCCTCGCTGATTACGTGGCCAAGATATTTTATACTCCGCTGGAAGAACTGGCACTTGTCTCGGTTGAGCCGGAGATTGGCCTCTCGGAGCCGTCGGAATACCTCGCGTAAGTTCCGTACGTGCTCGGAGAGTGTGGCCCCGACGACAATGATGTCGTCCAAGTAGGCGAAAGCGTGT---GGCTC
droEle1	scf7180000490733:19062-19253 +		GTGAATGCCCTGGTCGCTGATCACGTGTCCGAGGTAGGCCAGTTTCCTCTTGAAGAATGAGCACTTTTCCTGGTTGATGCGCAGGTTGGCTCTCCTCAGTCGCTCGAAGACTTTGCGCAGGTTGTCCATGTGTTCCTCCAGGCTGGCTCCGATGACAATAATGTCGTCGAGATAGGCGAATGCGTCC---GGGTC
droRho1	scf7180000763392:613-804 +		GTGGATACCCTGGTCACTGATCACATGTCCAAGGTAGGCCAGTTTTCTCTTGAAGAAGGAGCACTTTTCCTGGTTGATGCGCAGGTTAGCTCTCCTCAATCGTTCGAAAACTTTGCGCAGGTTGTCCATGTGTTCCCCTAGGCTGGCCCCAATGACAATAATGTCATCGAGGTAGGCGAACGCGTAT---GGGTC
droBia1	scf7180000297228:12548-12739 -		GTGAATTCCCTCCTCACTGATGACGTGTCCCAAGTACCCCAGGCTGCGCTTAAAGAAACTGCATTTCTTCGCGTTGAGACGAAGGTTCGCCTTTCGTAGCCGTCGGAATACTTCTTGTAAATGCTGCACATGCTCCTCCAGAGTGCGGCCGATGATGATGATGTCATCCAAATACGCAAACGCGTTG---GGCTC
droTak1	scf7180000415873:16404-16595 +		GTGGATACCCTGGTCACTGATCACATGTCCAAGGTAGGCCAGTTTTCTCTTGAAGAAGGAGCACTTTTCCTGGTTGATGCGCAGGTTAGCTCTCCTCAATCGGTCGAATACTTTGCGTAAGTTGTCCATGTGTTCCCCTAGACTGGCTCCAATGACAATAATGTCATCGAGGTAGGCGAACGCGTAT---GGGTC
droEug1	scf7180000409859:26144-26335 -		CTGTATCCCGGCCTCGCTGATGACGTGGCCAAGATATTTTATGCTCCGCTGGAAAAACTGGCATTTGTCCCGATTGAGCCGGAGGTTAGCTTCTCGGAGCCGTCGGAACACCTCGCATAGGTTCCGCACGTGCTCAGAGAGTGTGGACCCGACGACGATGATGTCGTCTACGTAGGCAAAGGCGTGT---GCTTC
dm3	chr3L:23583684-23583874 +		TTTGATCCCACGGTCGCCCACTATGTGTCCCAGATACTTTAGTTTCTTCTAAAAAATGTGGCACTTATCCGGGTTGATCTTCAGATTGGCTTGTTGCAATCTTCTGAACACCTCCTTCAGGTTC-CCATGTGCTTCTTCTTATTCTGCCCGATTACGACAATATCGTCCAAGTATCTGAACGCGAAT---GGTTC
droSim2	2r:1960566-1960744 -		AAAAATCCCGGCCTCACTGATTACGGGTCCAAGATATCGAATGCTCCGTTGGAGGAACTGGCACTTGTCCCTGT------------TGGCTTCCCTAAGCCGTCGGAACACCTCGCGG-TATTCCGTACGCGCTCCTGTAGAGTAGATCCGATCACGATGATGTCATCGAGATAGGCCAAGGCATGC---GACTC
droSec2	scaffold_3413:1941-2132 +		TCCAATACCTTGATTCGTCACGCGGTGACCCAAGTATTGTAGTTCCTTCCTAAAGAATTTGCACTTATCCGCATTCACTTTCAGGTTCGCCGCTCGTAGCCTCTTGAACACCTCCCTCAAGTTTCGCATATGTTCCTGCAGCGTCCGTCCGATGACTATGATGTCGTCCTGATATGCGAACGCGTGC---GGCAT
droYak3	v2_chrUn_4989:204107-204298 -		ATGGATTCCGGCCTCGCTGATGACGTGTCTGAGATATCGTATACTGCGCTGGAAGAACTGGCTCTTGTCTCGGTTGAGGCGGAGGTTGGCTTCCCTCAGACGTCGAAACACTTCCCTTAAGTTCCGTACGTGCTCCTGGAGTGTAGACCCGATCACTATGGTATCATCGAGATAGGCAAAGGCATGC---GGTTC
droEre2	scaffold_4770:251222-251413 +		TCCGATACCCTGATCCGTCACGCGGTGGCCCAAGTATTGCATTACCTTCCTGAAGAATTTGCACTTATCCGCATTCACCTTCAGGTTCGCCGCCCGCAGCCTCCGGAAAACCTCCTTCAAGTTGCGCACATGCTCTTGCAGTGTCCGTCCGATCACTATGATATCGTCTTGATATGCAAAAGCGTGC---GGCAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GTGGATTCCCCGGTCATTGATGACGTGGCCCAGATAGGTAATACTTTTCCTGAAGAACGCGCATTTGTCTGGGTTGAGCCTCAGGTTGGCCTCACGGAGACGGCGGAATACATCTCGCAAGACTCGCATGTGCTCCTCCAGGGTCGCGGCTACCACCACGATGTCATCTAGGTAGGCGAATGCTTAT---GGTTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................AAGACTCGCATGTGCTCCTCCAG......................................................	23	9	3.56	32	29	1	0	0	2	0
..................................................TGAAGAACGCGCATTTGTCTGGGTT........................................................................................................................	25	5	3.00	15	0	0	0	0	0	15
......................................................................................................................AAGACTCGCATGTGCTCCTCCAGGG....................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................AAGACTCGCATGTGCTCCTCCA.......................................................	22	11	0.73	8	7	1	0	0	0	0
................................................................................................................TCTCGCAAGACTCGCATGTGCTCCTC.........................................................	26	2	0.50	1	0	0	0	0	1	0
..................................................TGAAGAACGCGCATTTGTCTGGGTTG.......................................................................................................................	26	5	0.40	2	1	0	0	0	0	1
.........................TGGCCCAGATAGGTAATACTTTTCC.................................................................................................................................................	25	9	0.22	2	2	0	0	0	0	0
..................................................TGAAGAACGCGCATTTGTCTGGGT.........................................................................................................................	24	5	0.20	1	0	0	0	0	0	1
......................................................................................................................AAGACTCGCATGTGCTCCTCC........................................................	21	11	0.18	2	1	0	0	0	1	0
...................................................................................................................CGCAAGACTCGCATGTGCTCCTC.........................................................	23	6	0.17	1	1	0	0	0	0	0
................................................................................TCAGGTTGGCCTCACGGAGACGGC...........................................................................................	24	6	0.17	1	0	0	0	0	0	1
...............................................................................................................................................TCGCGGCTACCACCACGATGTCATC...........................	25	8	0.13	1	0	0	0	0	1	0
......................................................................................................................AAGACTCGCATGTGCTCCTCCATC.....................................................	24	11	0.09	1	1	0	0	0	0	0
.......................................................................................................................AGACTCGCATGTGCTCCTCCA.......................................................	21	11	0.09	1	1	0	0	0	0	0
......................................................................................................................AAGACTCGCATGTGCTCCT..........................................................	19	12	0.08	1	0	0	0	0	1	0

droVir3

ACGTATTCTTT--CCACAAGTGACATGTCCCAGGTAGACCAGCCTCTCCCTGAAGAAGCTGCACTTGTTTCTATTGAGCCTGAGATTGGCCGCCCTTAAACGGCGGAATACCGTCCTCAAATTCTTCACCAGCTCCTCTTTCTTTGCCCGTATTACCACGATATCGTCGAGGTAAGCTTATGCATGT---GGCTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................GACATGTCCCAGGTAGACCAGCCTCT....................................................................................................................................................	26	1	10.00	10	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	1	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACATGTCCCAGGTAGACCAGCCTC.....................................................................................................................................................	25	1	8.00	8	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CAGGTAGACCAGCCTCTCCCTGAAGAAGC........................................................................................................................................	29	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCGTCGAGGTAAGCTTATGCATGT---GGC..	27	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TGCCCGTATTACCACGATATCGTCGAGG.......................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TCTCCCTGAAGAAGCTGCACTTG................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CATGTCCCAGGTAGACCAG.........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACATGTCCCAGGTAGACCAGCCT......................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TGAAGAAGCTGCACTTGTTTCTATT........................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TGCCCGTATTACCACGATATCGTCGAGGT......................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACATGTCCCAGGTAGACCAG.........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TCAAATTCTTCACCAGCTCCTC.........................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACATGTCCCAGGTAGACCAGCCTCTC...................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCGTCGAGGTAAGCTTATGCATGT---GG...	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACGTATTCTTT--CCACAAGTGACATGT.......................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................CTCTCCCTGAAGAAGCTGCACTTGTT..............................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TCCCAGGTAGACCAGCCTCTCCCTGAA.............................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TATTCTTT--CCACAAGTGACATGTCCCA...................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................GAGCCTGAGATTGGCCGCCCTTAAAC..............................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TACCACGATATCGTCGAGGTAAGC..................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AGCCTGAGATTGGCCGCCCTTT.................................................................................................	22	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GCGTATCCCTTCTTCGGTCACCTGATGGCCAAGGTATTTAAGTTCCGTTTTGAAGAAGTCGCACTTGTCCACATTGATCCTCAGGTTCGATACTCGCAACCGTCGGAACACTTCTCGCAAGTTGTGCATGTGTTCCTCGCGCTTATTCCCGATCACAATGATGTCATCCAAATATGCAAAGGAATGCTTTTGTTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

ATGGATACCATCCTCACTGATGACATGACCTAGAAATTGGATCCGCTTCTTGAAGAAACGACATTTGTCTCGGTTGATCCTTAAATTGGCTTCTCGTAGACGTCGGAAGACTTCAAGCAGGTGTGAGAGGTGTTCCTCGAGCGTCTTTCCGATTACGATAATATCGTCTAGGTAGGCGAAGGCATGT---GGTTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................TAGACGTCGGAAGACTTCAAGCAGGTG........................................................................	27	2	30.00	60	0	9	2	49	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCCT..........................................................	25	20	11.45	229	0	47	6	174	2
................................................................TTGTCTCGGTTGATCCTTAAATTGGCT........................................................................................................	27	12	8.42	101	0	59	3	39	0
................................................................................................TAGACGTCGGAAGACTTCAAGCAGGT.........................................................................	26	2	6.00	12	0	2	0	10	0
.................................................................TGTCTCGGTTGATCCTTAAATTGGCT........................................................................................................	26	12	5.92	71	0	39	0	32	0
...........................................................................................TCTCGTAGACGTCGGAAGACT...................................................................................	21	3	4.67	14	0	0	0	14	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCC...........................................................	24	20	3.50	70	0	17	0	53	0
................................................................................................TAGACGTCGGAAGACTTCAAGCAGG..........................................................................	25	2	2.50	5	0	3	0	2	0
................................................................TTGTCTCGGTTGATCCTTAAATTGG..........................................................................................................	25	12	2.42	29	0	24	0	5	0
................................................................TTGTCTCGGTTGATCCTTAAATTGGC.........................................................................................................	26	12	2.25	27	0	15	0	12	0
...............................................................................................................TTCAAGCAGGTGTGAGAGGTGTTCC...........................................................	25	20	2.05	41	0	7	0	34	0
............................................................................................................GACTTCAAGCAGGTGTGAGAGGT................................................................	23	20	2.05	41	0	1	0	40	0
...............................................................................................................TTCAAGCAGGTGTGAGAGGTGTTCCT..........................................................	26	20	1.85	37	0	21	0	16	0
...............................................................................................................................................TCTTTCCGATTACGATAATATCGTC...........................	25	11	1.64	18	0	17	0	1	0
.................................................................TGTCTCGGTTGATCCTTAAATTGGC.........................................................................................................	25	12	1.58	19	0	11	0	8	0
...............................................................TTTGTCTCGGTTGATCCTTAAATTGGCT........................................................................................................	28	12	1.58	19	0	9	1	9	0
.................................................................................................AGACGTCGGAAGACTTCAAGCAGGTG........................................................................	26	2	1.50	3	0	2	0	1	0
.................................................................................TAAATTGGCTTCTCGTAGACGTCGGA........................................................................................	26	2	1.50	3	0	3	0	0	0
.................................................................................TAAATTGGCTTCTCGTAGACGTCGGAA.......................................................................................	27	2	1.50	3	0	3	0	0	0
...........................................................................................TCTCGTAGACGTCGGAAGACTTCAAG..............................................................................	26	3	1.33	4	0	4	0	0	0
.................................................................................................................................................................TATCGTCTAGGTAGGCGAAGGCATG.........	25	4	1.25	5	0	5	0	0	0
...............................................................TTTGTCTCGGTTGATCCTTAAATTGG..........................................................................................................	26	12	1.25	15	0	13	0	2	0
...............................................................TTTGTCTCGGTTGATCCTTAAATTGGC.........................................................................................................	27	12	1.00	12	0	2	0	10	0
................................................................................TTAAATTGGCTTCTCGTAGACGTCGGA........................................................................................	27	2	1.00	2	0	2	0	0	0
...........................................................................................................................TGAGAGGTGTTCCTCGAGCGTCTT................................................	24	20	0.95	19	0	16	0	3	0
...............................................................TTTGTCTCGGTTGATCCTTAAATTG...........................................................................................................	25	12	0.83	10	0	3	0	7	0
.....................................................................................................................................TCCTCGAGCGTCTTTCCGATTACGA.....................................	25	20	0.80	16	0	15	0	1	0
...........................................................................................TCTCGTAGACGTCGGAAGACTTCAAGC.............................................................................	27	3	0.67	2	0	1	0	1	0
...........................................................................................TCTCGTAGACGTCGGAAGACTTCA................................................................................	24	3	0.67	2	0	2	0	0	0
.............................................................................................TCGTAGACGTCGGAAGACTTCAAGC.............................................................................	25	3	0.67	2	0	2	0	0	0
..................................................TGAAGAAACGACATTTGTCTCGGTT........................................................................................................................	25	20	0.65	13	0	3	0	10	0
...................................................................TCTCGGTTGATCCTTAAATTGGCT........................................................................................................	24	13	0.62	8	0	3	0	5	0
..................................................................................................................................TGTTCCTCGAGCGTCTTTCCGATTACGA.....................................	28	20	0.55	11	0	11	0	0	0
...................................................................TCTCGGTTGATCCTTAAATTGGCTTC......................................................................................................	26	13	0.54	7	0	4	0	3	0
...................................................................................................ACGTCGGAAGACTTCAAGCAGGTG........................................................................	24	2	0.50	1	0	0	0	1	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTC............................................................	23	20	0.50	10	0	4	1	5	0
..............................................................................................CGTAGACGTCGGAAGACTTCAAGCAGG..........................................................................	27	2	0.50	1	0	1	0	0	0
.......................................................................................................CGGAAGACTTCAAGCAGGTGTGAGA...................................................................	25	2	0.50	1	0	1	0	0	0
..............................................................................................CGTAGACGTCGGAAGACTTCAAGCAGGT.........................................................................	28	2	0.50	1	0	1	0	0	0
.................................................................................................AGACGTCGGAAGACTTCAAGCAGGT.........................................................................	25	2	0.50	1	0	0	0	1	0
................................................................................TTAAATTGGCTTCTCGTAGACGTCGGAA.......................................................................................	28	2	0.50	1	0	1	0	0	0
....................................................................................................CGTCGGAAGACTTCAAGCAGGT.........................................................................	22	2	0.50	1	0	1	0	0	0
.......................................................................................................CGGAAGACTTCAAGCAGGTGTGAG....................................................................	24	2	0.50	1	0	1	0	0	0
.........................................................................................................GAAGACTTCAAGCAGGTGTGAGAGGT................................................................	26	2	0.50	1	0	0	0	1	0
................................................................................TTAAATTGGCTTCTCGTAGACGTCGG.........................................................................................	26	2	0.50	1	0	1	0	0	0
......................................................................................TGGCTTCTCGTAGACGTCGGAAG......................................................................................	23	2	0.50	1	0	0	0	1	0
..................................................................................AAATTGGCTTCTCGTAGACGTCGGAAG......................................................................................	27	2	0.50	1	0	1	0	0	0
.....................................................................................TTGGCTTCTCGTAGACGTCGGAAG......................................................................................	24	2	0.50	1	0	0	0	1	0
.....................................................................................TTGGCTTCTCGTAGACGTCGGAAGACT...................................................................................	27	2	0.50	1	0	0	0	1	0
.................................................................................TAAATTGGCTTCTCGTAGACGTCGG.........................................................................................	25	2	0.50	1	0	1	0	0	0
................................................................................................TAGACGTCGGAAGACTTCAAGCAGGTA........................................................................	27	2	0.50	1	0	0	0	1	0
.....................................................................................TTGGCTTCTCGTAGACGTCGGAA.......................................................................................	23	2	0.50	1	0	1	0	0	0
....................................................................CTCGGTTGATCCTTAAATTGGCTTC......................................................................................................	25	13	0.46	6	0	1	0	5	0
..........................................................................................................AAGACTTCAAGCAGGTGTGAGAGGT................................................................	25	20	0.45	9	0	1	1	7	0
................................................................TTGTCTCGGTTGATCCTTAAATTG...........................................................................................................	24	12	0.42	5	0	4	0	1	0
................................................................TTGTCTCGGTTGATCCTTAAATTGGCTTC......................................................................................................	29	12	0.42	5	0	4	1	0	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCCTCG........................................................	27	20	0.40	8	0	6	0	2	0
............................................................................................................GACTTCAAGCAGGTGTGAGAGGTG...............................................................	24	20	0.40	8	0	1	0	7	0
............................................................................................................GACTTCAAGCAGGTGTGAGAGGTGT..............................................................	25	20	0.40	8	0	1	0	7	0
..........................................................................TGATCCTTAAATTGGCTTCTCGTAGACG.............................................................................................	28	11	0.36	4	0	4	0	0	0
..................................................................................................................AAGCAGGTGTGAGAGGTGTTCCT..........................................................	23	20	0.35	7	0	0	0	7	0
.................................................................TGTCTCGGTTGATCCTTAAATTGGCTT.......................................................................................................	27	12	0.33	4	0	1	0	3	0
.............................................................................TCCTTAAATTGGCTTCTCGTAGACG.............................................................................................	25	12	0.33	4	0	2	0	2	0
.............................................................................TCCTTAAATTGGCTTCTCGTAGACGT............................................................................................	26	12	0.33	4	0	3	0	1	0
..........................................................................................TTCTCGTAGACGTCGGAAGACT...................................................................................	22	3	0.33	1	0	0	0	1	0
..............................................................................................CGTAGACGTCGGAAGACTTCAAG..............................................................................	23	3	0.33	1	0	1	0	0	0
...........................................................................................TCTCGTAGACGTCGGAAGACTC..................................................................................	22	3	0.33	1	0	0	0	1	0
..........................................................................................TTCTCGTAGACGTCGGAAGACTTCAAGC.............................................................................	28	3	0.33	1	0	0	0	1	0
..........................................................................................TTCTCGTAGACGTCGGAAGACTTC.................................................................................	24	3	0.33	1	0	1	0	0	0
.................................................................................................................CAAGCAGGTGTGAGAGGTGTTCCT..........................................................	24	20	0.30	6	0	6	0	0	0
.....................................................................................................................................TCCTCGAGCGTCTTTCCGATTACGATA...................................	27	20	0.30	6	0	4	0	2	0
................................................................................TTAAATTGGCTTCTCGTAGACGTCG..........................................................................................	25	20	0.30	6	0	6	0	0	0
..................................................................................................................................................TTCCGATTACGATAATATCGTCTAGG.......................	26	7	0.29	2	0	2	0	0	0
................................................................................................................................................CTTTCCGATTACGATAATATCGTC...........................	24	11	0.27	3	0	3	0	0	0
..............................................................................................................................................................TAATATCGTCTAGGTAGGCGAAGGCATG.........	28	4	0.25	1	0	1	0	0	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCCTCT........................................................	27	20	0.25	5	0	1	0	4	0
..............................................................................................................................................................TAATATCGTCTAGGTAGGCGAAGGCA...........	26	4	0.25	1	0	1	0	0	0
.................................................................................................................................................................TATCGTCTAGGTAGGCGAAGGC............	22	4	0.25	1	0	0	0	1	0
.................................................................................................................................................................TATCGTCTAGGTAGGCGAA...............	19	4	0.25	1	0	1	0	0	0
...........................................................................................................................TGAGAGGTGTTCCTCGAGCGTCTTT...............................................	25	20	0.25	5	0	0	0	5	0
........................................................................................................................................................................TAGGTAGGCGAAGGCATGT---GGTTC	24	4	0.25	1	0	1	0	0	0
..............................................................................................................................................................TAATATCGTCTAGGTAGGCGAAGGC............	25	4	0.25	1	0	1	0	0	0
............................................................................................................GACTTCAAGCAGGTGTGAGAGG.................................................................	22	20	0.25	5	0	4	0	1	0
................................................................TTGTCTCGGTTGATCCTTAAATTGGCTT.......................................................................................................	28	12	0.25	3	0	2	0	1	0
.................................................................................................................................................................TATCGTCTAGGTAGGCGAAGGCA...........	23	4	0.25	1	0	1	0	0	0
.................................................................TGTCTCGGTTGATCCTTAAATTGGCTA.......................................................................................................	27	12	0.25	3	0	0	0	3	0
..................................................................GTCTCGGTTGATCCTTAAATTGGCT........................................................................................................	25	12	0.25	3	0	3	0	0	0
....................................................................CTCGGTTGATCCTTAAATTGGCTTCT.....................................................................................................	26	13	0.23	3	0	1	0	2	0
...............................................................................................................................................TCTTTCCGATTACGATAATATCGT............................	24	14	0.21	3	0	2	0	1	0
.....................................................................................................................................TCCTCGAGCGTCTTTCCGATTACGAT....................................	26	20	0.20	4	0	2	0	2	0
..................................................TGAAGAAACGACATTTGTCTCGGTTGA......................................................................................................................	27	20	0.20	4	0	3	0	1	0
.....................................................................................................................................TCCTCGAGCGTCTTTCCGATTACGATAA..................................	28	20	0.20	4	0	4	0	0	0
................................................................................TTAAATTGGCTTCTCGTAGACGT............................................................................................	23	20	0.20	4	0	3	0	1	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCCTC.........................................................	26	20	0.20	4	0	1	0	3	0
...........................................................................................................AGACTTCAAGCAGGTGTGAGAGGT................................................................	24	20	0.20	4	0	0	0	4	0
..............................................................................CCTTAAATTGGCTTCTCGTAGACG.............................................................................................	24	12	0.17	2	0	2	0	0	0
................................................................TTGTCTCGGTTGATCCTTAAATTGGCTA.......................................................................................................	28	12	0.17	2	0	1	0	1	0
..........................................................................................TTCTCGTAGACGTCGGAAGACTTCAATA.............................................................................	28	6	0.17	1	0	0	1	0	0
..........................................................................TGATCCTTAAATTGGCTTCTCGTAGA...............................................................................................	26	12	0.17	2	0	2	0	0	0
.................................................................TGTCTCGGTTGATCCTTAAATTGGCTTC......................................................................................................	28	12	0.17	2	0	0	0	2	0
...........................................................................................TCTCGTAGACGTCGGAAGACTTCAAT..............................................................................	26	6	0.17	1	0	0	0	1	0
....................................................................CTCGGTTGATCCTTAAATTGGCTTCTCG...................................................................................................	28	12	0.17	2	0	1	0	1	0
....................................................................CTCGGTTGATCCTTAAATTGGCTTCTC....................................................................................................	27	13	0.15	2	0	0	0	2	0
..............................................TTCTTGAAGAAACGACATTTGTCTCGGT.........................................................................................................................	28	13	0.15	2	0	2	0	0	0
...................................................................TCTCGGTTGATCCTTAAATTGGCTT.......................................................................................................	25	13	0.15	2	0	0	0	2	0
..................................................................................................................................TGTTCCTCGAGCGTCTTTCCGATT.........................................	24	20	0.15	3	0	0	0	3	0
.................................................................................................................CAAGCAGGTGTGAGAGGTGTTCCTC.........................................................	25	20	0.15	3	0	0	0	3	0
...................................................................................................................AGCAGGTGTGAGAGGTGTTCCTCGA.......................................................	25	20	0.15	3	0	2	0	1	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGT..............................................................	21	20	0.15	3	0	2	0	1	0
..................................................................................................................................TGTTCCTCGAGCGTCTTTCCGATTA........................................	25	20	0.15	3	0	0	0	3	0
...............................................................................................................TTCAAGCAGGTGTGAGAGGTGT..............................................................	22	20	0.15	3	0	3	0	0	0
................................................................................TTAAATTGGCTTCTCGTAGACGTC...........................................................................................	24	20	0.15	3	0	3	0	0	0
...........................................................................................................................TGAGAGGTGTTCCTCGAGCGTCT.................................................	23	20	0.15	3	0	2	1	0	0
...............................................................................................................TTCAAGCAGGTGTGAGAGGTGTTC............................................................	24	20	0.15	3	0	1	0	2	0
..................................................................................................................AAGCAGGTGTGAGAGGTGTTCCTCG........................................................	25	20	0.10	2	0	0	0	2	0
..................................................TGAAGAAACGACATTTGTCTCGGT.........................................................................................................................	24	20	0.10	2	0	1	0	1	0
....................................................................................................................................TTCCTCGAGCGTCTTTCCGATTACGA.....................................	26	20	0.10	2	0	1	0	1	0
.............................................................................TCCTTAAATTGGCTTCTCGTAGACGTCG..........................................................................................	28	10	0.10	1	0	1	0	0	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCCTAT........................................................	27	20	0.10	2	0	1	0	1	0
......................................................................................................................AGGTGTGAGAGGTGTTCCTCGAGC.....................................................	24	20	0.10	2	0	0	0	2	0
.............................................................................TCCTTAAATTGGCTTCTCGTAGACGTC...........................................................................................	27	10	0.10	1	0	0	0	1	0
.....................................................................................................................CAGGTGTGAGAGGTGTTCCTCGAGC.....................................................	25	20	0.10	2	0	0	0	2	0
................................................................................................................TCAAGCAGGTGTGAGAGGTG...............................................................	20	20	0.10	2	0	0	0	2	0
.................................................TTGAAGAAACGACATTTGTCTCGGT.........................................................................................................................	25	20	0.10	2	0	2	0	0	0
..................................................................................................................................TGTTCCTCGAGCGTCTTTCCGATTACG......................................	27	20	0.10	2	0	0	0	2	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCCTCGAG......................................................	29	20	0.10	2	0	0	0	2	0
...................................................................................................................AGCAGGTGTGAGAGGTGTTCCTCGATA.....................................................	27	20	0.10	2	0	0	0	2	0
.....................................................................................................................CAGGTGTGAGAGGTGTTCCTCGAGCG....................................................	26	20	0.10	2	0	0	0	2	0
.....................................................................................................................CAGGTGTGAGAGGTGTTCCTCGAG......................................................	24	20	0.10	2	0	0	0	2	0
......................................................................................................................................CCTCGAGCGTCTTTCCGATTACGA.....................................	24	20	0.10	2	0	2	0	0	0
..................................................TGAAGAAACGACATTTGTCTCGGTTG.......................................................................................................................	26	20	0.10	2	0	2	0	0	0
...............................................................................................................TTCAAGCAGGTGTGAGAGGTGTT.............................................................	23	20	0.10	2	0	1	0	1	0
.........................................................................................................................TGTGAGAGGTGTTCCTCGAGCGTCTT................................................	26	20	0.10	2	0	2	0	0	0
............................................................................................................................GAGAGGTGTTCCTCGAGCGTCTT................................................	23	20	0.10	2	0	2	0	0	0
................................................................................................................................GGTGTTCCTCGAGCGTCTTTCCGAT..........................................	25	20	0.10	2	0	0	0	2	0
...............................................................................................................................................TCTTTCCGATTACGATAATATCGTCT..........................	26	11	0.09	1	0	1	0	0	0
.................................................................TGTCTCGGTTGATCCTTAAATTGG..........................................................................................................	24	12	0.08	1	0	1	0	0	0
................................................................TTGTCTCGGTTGATCCTTAAATTGGAAA.......................................................................................................	28	12	0.08	1	0	0	0	1	0
..................................................................GTCTCGGTTGATCCTTAAATTGG..........................................................................................................	23	12	0.08	1	0	1	0	0	0
..................................................................GTCTCGGTTGATCCTTAAATTGGC.........................................................................................................	24	12	0.08	1	0	1	0	0	0
................................................................TTGTCTCGGTTGATCCTTAAATTGGCTG.......................................................................................................	28	12	0.08	1	0	1	0	0	0
.....................................................................TCGGTTGATCCTTAAATTGGCTTCTCG...................................................................................................	27	12	0.08	1	0	1	0	0	0
................................................................TTGTCTCGGTTGATCCTTAAATTGGCTC.......................................................................................................	28	12	0.08	1	0	1	0	0	0
..................................................................................................................................................TTCCGATTACGATAATATCGTCTAG........................	25	12	0.08	1	0	1	0	0	0
..........................................................................TGATCCTTAAATTGGCTTCTCGTAG................................................................................................	25	12	0.08	1	0	1	0	0	0
.................................................................................................................................................TTTCCGATTACGATAATATCGTC...........................	23	12	0.08	1	0	1	0	0	0
.................................................................TGTCTCGGTTGATCCTTAAATTG...........................................................................................................	23	12	0.08	1	0	1	0	0	0
.......................................................................GGTTGATCCTTAAATTGGC.........................................................................................................	19	13	0.08	1	0	1	0	0	0
...................................................................TCTCGGTTGATCCTTAAATTGGCTTCTA....................................................................................................	28	13	0.08	1	0	0	0	1	0
...................................................................TCTCGGTTGATCCTTAAATTGGC.........................................................................................................	23	13	0.08	1	0	1	0	0	0
..............................................TTCTTGAAGAAACGACATTTGTCTCGG..........................................................................................................................	27	13	0.08	1	0	1	0	0	0
...................................................................TCTCGGTTGATCCTTAAATTGGCTTCT.....................................................................................................	27	13	0.08	1	0	1	0	0	0
.....................................................................TCGGTTGATCCTTAAATTGGCTTCTC....................................................................................................	26	13	0.08	1	0	1	0	0	0
...............................................TCTTGAAGAAACGACATTTGTCTCG...........................................................................................................................	25	13	0.08	1	0	1	0	0	0
.....................................................AGAAACGACATTTGTCTCGGTTGATCC...................................................................................................................	27	13	0.08	1	0	1	0	0	0
................................................CTTGAAGAAACGACATTTGTCTCGG..........................................................................................................................	25	13	0.08	1	0	1	0	0	0
.......................................................AAACGACATTTGTCTCGGTTGATCC...................................................................................................................	25	13	0.08	1	0	0	0	1	0
......................................................GAAACGACATTTGTCTCGGTTGATCC...................................................................................................................	26	13	0.08	1	0	1	0	0	0
....................................................................CTCGGTTGATCCTTAAATTGGCT........................................................................................................	23	13	0.08	1	0	0	0	1	0
...............................................................TTTGTCTCGGTTGATCCTTAAATT............................................................................................................	24	14	0.07	1	0	1	0	0	0
.................................................................TGTCTCGGTTGATCCTTAAATT............................................................................................................	22	14	0.07	1	0	1	0	0	0
................................................................................................................................................CTTTCCGATTACGATAATATCGT............................	23	14	0.07	1	0	1	0	0	0
..............................................................................................................................................GTCTTTCCGATTACGATAATATCGT............................	25	14	0.07	1	0	1	0	0	0
...............................................................................................................................................TCTTTCCGATTACGATAATATCG.............................	23	16	0.06	1	0	0	0	1	0
..............................................................................................................................................GTCTTTCCGATTACGATAATATCG.............................	24	16	0.06	1	0	1	0	0	0
.............................................................................................................................................CGTCTTTCCGATTACGATAATATC..............................	24	18	0.06	1	0	0	0	1	0
.........................................................................................................................................CGAGCGTCTTTCCGATTACGATAATA................................	26	19	0.05	1	0	1	0	0	0
.................................................................................................................CAAGCAGGTGTGAGAGGTGTTCCTCGT.......................................................	27	20	0.05	1	0	0	0	1	0
...............................................................................................................................AGGTGTTCCTCGAGCGTCTTTCCGAT..........................................	26	20	0.05	1	0	0	0	1	0
...................................................................................................................................GTTCCTCGAGCGTCTTTCCGATT.........................................	23	20	0.05	1	0	1	0	0	0
............................................................................................................GACTTCAAGCAGGTGTGAGAGGTGTTA............................................................	27	20	0.05	1	0	0	0	1	0
.................................................................................TAAATTGGCTTCTCGTAGACGTCG..........................................................................................	24	20	0.05	1	0	1	0	0	0
...........................................................................................................................TGAGAGGTGTTCCTCGAGCGTC..................................................	22	20	0.05	1	0	0	0	1	0
..............................................................................................................................GAGGTGTTCCTCGAGCGTCTTTCCGA...........................................	26	20	0.05	1	0	1	0	0	0
..........................................................................................................AAGACTTCAAGCAGGTGTGAGAGG.................................................................	24	20	0.05	1	0	0	0	1	0
...................................................................................................................AGCAGGTGTGAGAGGTGTTCCTCGAGCG....................................................	28	20	0.05	1	0	0	0	1	0
...........................................................................................................................TGAGAGGTGTTCCTCGAGCGTCTTAG..............................................	26	20	0.05	1	0	0	0	1	0
.....................................................................................................................CAGGTGTGAGAGGTGTTCCTCGAGCGT...................................................	27	20	0.05	1	0	0	0	1	0
.................................................................................................................CAAGCAGGTGTGAGAGGTGTTCCTCG........................................................	26	20	0.05	1	0	1	0	0	0
.................................................................................................................CAAGCAGGTGTGAGAGGTGTTCC...........................................................	23	20	0.05	1	0	1	0	0	0
............................................................................................................GACTTCAAGCAGGTGTGAGAGGTGTTCC...........................................................	28	20	0.05	1	0	1	0	0	0
..................................................................................AAATTGGCTTCTCGTAGACGT............................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCCTCGA.......................................................	28	20	0.05	1	0	1	0	0	0
...................................................GAAGAAACGACATTTGTCTCGGT.........................................................................................................................	23	20	0.05	1	0	1	0	0	0
....................................................................................................................................TTCCTCGAGCGTCTTTCCGATTAC.......................................	24	20	0.05	1	0	1	0	0	0
.....................................................................................................................CAGGTGTGAGAGGTGTTCC...........................................................	19	20	0.05	1	0	1	0	0	0
...............................................................................................................................AGGTGTTCCTCGAGCGTCTTTCCGA...........................................	25	20	0.05	1	0	0	0	1	0
.................................................................................TAAATTGGCTTCTCGTAGACGT............................................................................................	22	20	0.05	1	0	0	0	1	0
................................................................................................................TCAAGCAGGTGTGAGAGG.................................................................	18	20	0.05	1	0	0	0	1	0
...................................................................................................................AGCAGGTGTGAGAGGTGTTCCTCGAGTA....................................................	28	20	0.05	1	0	0	0	1	0
............................................................................................................GACTTCAAGCAGGTGTGAGAG..................................................................	21	20	0.05	1	0	0	0	1	0
.................................................................................................................................GTGTTCCTCGAGCGTCTTTCCGATTAC.......................................	27	20	0.05	1	0	0	0	1	0
.....................................................................................................................CAGGTGTGAGAGGTGTTCCTCT........................................................	22	20	0.05	1	0	1	0	0	0
..................................................................................................................AAGCAGGTGTGAGAGGTGTTCCTCGAT......................................................	27	20	0.05	1	0	0	0	1	0
...........................................................................................................AGACTTCAAGCAGGTGTGAGAG..................................................................	22	20	0.05	1	0	0	0	1	0
..............................................................................................................................GAGGTGTTCCTCGAGCGTCTTTCCGAT..........................................	27	20	0.05	1	0	1	0	0	0
...............................................................................................................TTCAAGCAGGTGTGAGAGGTGTTCCTCG........................................................	28	20	0.05	1	0	1	0	0	0
.........................................................................................................................TGTGAGAGGTGTTCCTCGAGCGTCTTG...............................................	27	20	0.05	1	0	1	0	0	0
.....................................................................................................................................TCCTCGAGCGTCTTTCCGAT..........................................	20	20	0.05	1	0	0	0	1	0
...........................................................................................................AGACTTCAAGCAGGTGTGAGAGG.................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................GTGTTCCTCGAGCGTCTTTCCGATTACG......................................	28	20	0.05	1	0	0	0	1	0
...................................................................................................................................GTTCCTCGAGCGTCTTTCCGATTACGA.....................................	27	20	0.05	1	0	1	0	0	0
......................................................................................................................AGGTGTGAGAGGTGTTCCTCGAGCG....................................................	25	20	0.05	1	0	1	0	0	0
..............................................................................................................CTTCAAGCAGGTGTGAGAGGTGT..............................................................	23	20	0.05	1	0	0	0	1	0
..............................................................................................................CTTCAAGCAGGTGTGAGAGGTGTTCC...........................................................	26	20	0.05	1	0	1	0	0	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCCTG.........................................................	26	20	0.05	1	0	0	0	1	0
...................................................................................................................AGCAGGTGTGAGAGGTGTTCCTCGAG......................................................	26	20	0.05	1	0	1	0	0	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCCTA.........................................................	26	20	0.05	1	0	0	0	1	0
...............................................................................................................TTCAAGCAGGTGTGAGAGGTGTTCCTAA........................................................	28	20	0.05	1	0	1	0	0	0
......................................................................................................................AGGTGTGAGAGGTGTTCCTCGA.......................................................	22	20	0.05	1	0	0	0	1	0
................................................................................................................TCAAGCAGGTGTGAGAGGTGTTCCTCATT......................................................	29	20	0.05	1	0	0	0	1	0
.......................................................AAACGACATTTGTCTCGGTT........................................................................................................................	20	20	0.05	1	0	0	0	1	0
.....................................................................................................................................TCCTCGAGCGTCTTTCCGATTACG......................................	24	20	0.05	1	0	0	0	1	0
................................................................................TTAAATTGGCTTCTCGTAGACG.............................................................................................	22	20	0.05	1	0	1	0	0	0
............................................................................................................................GAGAGGTGTTCCTCGAGCGTCTTTCCG............................................	27	20	0.05	1	0	1	0	0	0
...........................................................................................................................TGAGAGGTGTTCCTCGAGCGTCTTG...............................................	25	20	0.05	1	0	0	0	1	0
............................................................................................................GACTTCAAGCAGGTGTGAGA...................................................................	20	20	0.05	1	0	0	0	1	0
.................................................................................................................CAAGCAGGTGTGAGAGGT................................................................	18	20	0.05	1	0	0	0	1	0

dp5

GTGTATACCCTGCTCACTAATGACATGTCCCAGGTATACGATGCTTTTCTGGAAGAAGCTGCATTTCTTTTGGTTCAATCTTAGATTTGCTTCCCGTAGTCTCCGGAACACCTCTCGCATATGGTCGACGTGTTGCTCCAACGCCGCTCCGATGACAATAATGTCATCAAGGTAAGCGAATGCGTTG---GGTTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGTC..............................................................................................	27	3	112.00	336	0	269	36	1	13	0	4	11	2	0
.................TAATGACATGTCCCAGGTATACGA..........................................................................................................................................................	24	5	44.40	222	0	167	4	0	1	0	0	31	19	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAG................................................................................................	25	3	39.00	117	0	107	2	0	0	0	0	6	2	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGT...............................................................................................	26	3	25.00	75	0	62	7	0	1	0	1	2	2	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGTCT.............................................................................................	28	3	7.67	23	0	18	5	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATACGATG........................................................................................................................................................	26	5	4.80	24	0	19	2	0	0	0	1	2	0	0
..........................................................................TCAATCTTAGATTTGCTTCCCGT..................................................................................................	23	3	4.67	14	0	11	2	0	1	0	0	0	0	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTA.................................................................................................	24	3	4.33	13	0	13	0	0	0	0	0	0	0	0
...........................................................................CAATCTTAGATTTGCTTCCCGTAGTC..............................................................................................	26	3	3.67	11	0	11	0	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATACGATGCT......................................................................................................................................................	28	4	3.25	13	0	10	1	0	2	0	0	0	0	0
.................TAATGACATGTCCCAGGTATACG...........................................................................................................................................................	23	5	3.20	16	0	13	0	0	0	0	0	2	1	0
.................TAATGACATGTCCCAGGTATACGATGC.......................................................................................................................................................	27	4	3.00	12	0	8	3	0	1	0	0	0	0	0
..................AATGACATGTCCCAGGTATACGA..........................................................................................................................................................	23	5	2.80	14	0	14	0	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATACGATGCTT.....................................................................................................................................................	29	4	2.75	11	0	9	1	0	0	0	0	0	1	0
..............................................................................................................................................................TAATGTCATCAAGGTAAGCGAATG.............	24	4	2.75	11	0	9	1	0	0	0	1	0	0	0
..........................................................................TCAATCTTAGATTTGCTTCCCG...................................................................................................	22	3	2.33	7	0	7	0	0	0	0	0	0	0	0
..........TGCTCACTAATGACATGTCCCAGG.................................................................................................................................................................	24	4	2.25	9	0	6	0	0	0	0	0	3	0	0
...........................................................................CAATCTTAGATTTGCTTCCCGTAG................................................................................................	24	3	2.00	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATGTCATCAAGGTAAGCGAATGC............	25	4	1.75	7	0	6	1	0	0	0	0	0	0	0
..........................................................................TCAATCTTAGATTTGCTTCCC....................................................................................................	21	3	1.67	5	0	4	1	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATACGAT.........................................................................................................................................................	25	5	1.60	8	0	6	0	0	2	0	0	0	0	0
..........TGCTCACTAATGACATGTCCCAGGTA...............................................................................................................................................................	26	4	1.50	6	0	6	0	0	0	0	0	0	0	0
................CTAATGACATGTCCCAGGTATACGA..........................................................................................................................................................	25	4	1.50	6	0	4	0	0	0	0	0	2	0	0
.............TCACTAATGACATGTCCCAGGTATACGA..........................................................................................................................................................	28	4	1.25	5	0	5	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCATCAAGGTAAGCGAATGCGTTG---GG...	26	5	1.00	5	0	5	0	0	0	0	0	0	0	0
....................TGACATGTCCCAGGTATACGATGCT......................................................................................................................................................	25	4	1.00	4	0	4	0	0	0	0	0	0	0	0
.............TCACTAATGACATGTCCCAGGTA...............................................................................................................................................................	23	4	1.00	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATGTCATCAAGGTAAGCGAATGCGT..........	27	4	1.00	4	0	3	0	0	0	0	0	0	1	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGTCA.............................................................................................	28	3	1.00	3	0	3	0	0	0	0	0	0	0	0
......................................................................TGGTTCAATCTTAGATTTGCTTCCCG...................................................................................................	26	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.........................................................................TTCAATCTTAGATTTGCTTCCCGTAG................................................................................................	26	3	1.00	3	0	2	0	0	0	0	0	1	0	0
....................TGACATGTCCCAGGTATACGATGCTTT....................................................................................................................................................	27	4	1.00	4	0	4	0	0	0	0	0	0	0	0
....................TGACATGTCCCAGGTATACGATGCTT.....................................................................................................................................................	26	4	1.00	4	0	3	0	0	0	0	0	1	0	0
...............................................TCTGGAAGAAGCTGCATTTC................................................................................................................................	20	6	0.83	5	0	0	0	0	0	0	0	3	2	0
...............................................TCTGGAAGAAGCTGCATTTCA...............................................................................................................................	21	6	0.83	5	0	0	0	0	0	0	0	5	0	0
....................................TACGATGCTTTTCTGGAAGAAGCT.......................................................................................................................................	24	6	0.83	5	0	3	1	0	1	0	0	0	0	0
........................................................................................................................................................TGACAATAATGTCATCAAGGTAAGCGA................	27	4	0.75	3	0	1	0	0	0	0	0	2	0	0
.................................................................................................................................................................TGTCATCAAGGTAAGCGAATGCGTTG---.....	26	4	0.75	3	0	3	0	0	0	0	0	0	0	0
..............CACTAATGACATGTCCCAGGTA...............................................................................................................................................................	22	4	0.75	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................TCAAGGTAAGCGAATGCGTTG---GGT..	24	4	0.75	3	0	2	1	0	0	0	0	0	0	0
...................................................................................................................................................TCCGATGACAATAATGTCATCAAGG.......................	25	4	0.75	3	0	1	0	0	0	1	0	1	0	0
........................................................................................................................................................TGACAATAATGTCATCAAGGTAAGCG.................	26	4	0.75	3	0	3	0	0	0	0	0	0	0	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGTA..............................................................................................	27	3	0.67	2	0	2	0	0	0	0	0	0	0	0
...........................................................................CAATCTTAGATTTGCTTCCCGTA.................................................................................................	23	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.................................................................TCTTTTGGTTCAATCTTAGATTTGCTT.......................................................................................................	27	3	0.67	2	0	0	0	0	0	0	0	0	2	0
.................TAATGACATGTCCCAGGTATACGAA.........................................................................................................................................................	25	6	0.67	4	0	4	0	0	0	0	0	0	0	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGA...............................................................................................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGC...............................................................................................	26	3	0.67	2	0	0	2	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATAC............................................................................................................................................................	22	5	0.60	3	0	3	0	0	0	0	0	0	0	0
...............................................................................CTTAGATTTGCTTCCCGTAGTC..............................................................................................	22	5	0.60	3	0	3	0	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATA.............................................................................................................................................................	21	5	0.60	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................TGTCATCAAGGTAAGCGAATGCGT..........	24	5	0.60	3	0	2	0	0	0	0	0	0	1	0
...................................................................................................................................................................TCATCAAGGTAAGCGAATGCGTTG---G....	25	5	0.60	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................TCAAGGTAAGCGAATGCGTTG---GG...	23	5	0.60	3	0	2	0	0	0	0	1	0	0	0
....................................TACGATGCTTTTCTGGAAGAAGC........................................................................................................................................	23	6	0.50	3	0	2	0	0	1	0	0	0	0	0
....................................TACGATGCTTTTCTGGAAGAAGCTG......................................................................................................................................	25	6	0.50	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATGTCATCAAGGTAAGCGAA...............	22	4	0.50	2	0	0	0	0	0	0	0	0	2	0
...............................................TCTGGAAGAAGCTGCATTTAA...............................................................................................................................	21	6	0.50	3	0	0	0	0	0	0	0	3	0	0
..................AATGACATGTCCCAGGTATACGATGCTT.....................................................................................................................................................	28	4	0.50	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................TGACAATAATGTCATCAAGGTAAGCGAA...............	28	4	0.50	2	0	2	0	0	0	0	0	0	0	0
...............ACTAATGACATGTCCCAGGTATACGA..........................................................................................................................................................	26	4	0.50	2	0	2	0	0	0	0	0	0	0	0
..............................................TTCTGGAAGAAGCTGCATA..................................................................................................................................	19	7	0.43	3	0	1	0	0	0	0	0	0	2	0
......................................................................................................................................................................TCAAGGTAAGCGAATGCGTTG---G....	22	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..................AATGACATGTCCCAGGTATACGATG........................................................................................................................................................	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0
....................TGACATGTCCCAGGTATACGATG........................................................................................................................................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................TGCTTCCCGTAGTCTCCGGAACACC...................................................................................	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................CATCAAGGTAAGCGAATGCGTTG---GG...	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCATCAAGGTAAGCGAATGCGTTG---.....	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................GTCATCAAGGTAAGCGAATGCGTTG---G....	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTA...............................................................................................................................................................	19	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..........................................................................TCAATCTTAGATTTGCTTCC.....................................................................................................	20	3	0.33	1	0	0	1	0	0	0	0	0	0	0
......................................................................TGGTTCAATCTTAGATTTGCTTCC.....................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................CAATCTTAGATTTGCTTCCCGTAGTCT.............................................................................................	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGTCTC............................................................................................	29	3	0.33	1	0	0	1	0	0	0	0	0	0	0
..................................TATACGATGCTTTTCTGGAAGAAGCTG......................................................................................................................................	27	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.........................................TGCTTTTCTGGAAGAAGCTGCAT...................................................................................................................................	23	6	0.33	2	0	0	0	0	0	0	0	2	0	0
.........CTGCTCACTAATGACATGTCCCAGG.................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................GGTTCAATCTTAGATTTGCTT.......................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................TTCTGGAAGAAGCTGCATTT.................................................................................................................................	20	6	0.33	2	0	0	0	0	0	0	0	2	0	0
................................................................................TTAGATTTGCTTCCCGTAGTC..............................................................................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..............................................TTCTGGAAGAAGCTGCATTTAA...............................................................................................................................	22	6	0.33	2	0	0	0	0	0	0	0	2	0	0
......................................................................TGGTTCAATCTTAGATTTGCTTCCC....................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........CTGCTCACTAATGACATGTCCCAGGT................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................TTAGATTTGCTTCCCGTAGTCTCC...........................................................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...........................................................................CAATCTTAGATTTGCTTCCC....................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..................................TATACGATGCTTTTCTGGAAGAAGC........................................................................................................................................	25	6	0.33	2	0	1	1	0	0	0	0	0	0	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGTCAA............................................................................................	29	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................TCTGGAAGAAGCTGCATTC.................................................................................................................................	19	6	0.33	2	0	0	0	0	0	0	0	0	2	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGTCC.............................................................................................	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TCAATCTTAGATTTGCTTCCCGTAGTT..............................................................................................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................TGCTTTTCTGGAAGAAGCTGCATT..................................................................................................................................	24	6	0.33	2	0	1	0	0	0	0	0	1	0	0
............................................TTTTCTGGAAGAAGCTGCATTTCTT..............................................................................................................................	25	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..............................................TTCTGGAAGAAGCTGCATT..................................................................................................................................	19	6	0.33	2	0	0	0	0	0	0	0	0	2	0
........................................................................GTTCAATCTTAGATTTGCTTCCCGTAGTC..............................................................................................	29	3	0.33	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................TCCCGTAGTCTCCGGAACACCTCTC...............................................................................	25	7	0.29	2	0	0	0	0	0	0	0	2	0	0
.................................................TGGAAGAAGCTGCATTTCTTTTGG..........................................................................................................................	24	7	0.29	2	0	2	0	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATACGATGCC......................................................................................................................................................	28	4	0.25	1	0	0	1	0	0	0	0	0	0	0
..................AATGACATGTCCCAGGTATACGATGCT......................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................AATGTCATCAAGGTAAGCGAATGT............	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................TGACATGTCCCAGGTATACGATGC.......................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.............TCACTAATGACATGTCCCAGGTATA.............................................................................................................................................................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0
...TATACCCTGCTCACTAATGACATGTCC.....................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0
..................AATGACATGTCCCAGGTATACGATGC.......................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........TGCTCACTAATGACATGTCCCAGGT................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................ACGCCGCTCCGATGACAATAATG................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATGTCATCAAGGTAAGCGAATGCGC..........	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0
...................ATGACATGTCCCAGGTATACGATGCTTT....................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATGTCATCAAGGTAAGCGAATGT............	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.........................TGTCCCAGGTATACGATGC.......................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATGTCATCAAGGTAAGC..................	19	4	0.25	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................TAATGTCATCAAGGTAAGCG.................	20	4	0.25	1	0	0	0	0	0	0	1	0	0	0
........................ATGTCCCAGGTATACGATGC.......................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............CTCACTAATGACATGTCCCAGGTA...............................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCATCAAGGTAAGCGAATGCGTTG---GGT..	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............ACTAATGACATGTCCCAGGTATA.............................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
................CTAATGACATGTCCCAGGTATAC............................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................AATGTCATCAAGGTAAGCGAATGC............	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATACGATGCA......................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............CTCACTAATGACATGTCCCAGGT................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATGTCATCAAGGTAAGCGAATGCGA..........	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................AATGTCATCAAGGTAAGCGAATGCGT..........	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................AATGTCATCAAGGTAAGCGA................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................TGACATGTCCCAGGTATACGATGCTTA....................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................TCCAACGCCGCTCCGATGACAATAA..................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATACGATGCTA.....................................................................................................................................................	29	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................GACATGTCCCAGGTATACGATGCT......................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................CATCAAGGTAAGCGAATGCGTTG---GGT..	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................TAATGTCATCAAGGTAAGCGAATGCG...........	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................GACATGTCCCAGGTATACGATGCTT.....................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................TGACATGTCCCAGGTATACGATGCTA.....................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................TGACAATAATGTCATCAAGGTAAGC..................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................ACATGTCCCAGGTATACGATGCTTTTC..................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................TCTGGAAGAAGCTGCATA..................................................................................................................................	18	9	0.22	2	0	0	0	0	0	0	0	2	0	0
.....................................................................................TTTGCTTCCCGTAGTCTCCGGAACAC....................................................................................	26	5	0.20	1	0	0	1	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATACGATGT.......................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TTGCTTCCCGTAGTCTCCGGAACAA....................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................................TAGATTTGCTTCCCGTAGTCTCCGT.........................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TGCTTCCCGTAGTCTCCGGAACAC....................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................................TAGATTTGCTTCCCGTAGTCTCCG..........................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TTGCTTCCCGTAGTCTCCGGAACACCT..................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................TCTTTTGGTTCAATCTTAGATT............................................................................................................	22	5	0.20	1	0	0	0	0	0	0	0	1	0	0
...............................................................................CTTAGATTTGCTTCCCGTAGT...............................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................TGTCATCAAGGTAAGCGAATGCGTT.........	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................CATCAAGGTAAGCGAATGCGTTG---G....	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................TTAGATTTGCTTCCCGTAGTCTCCG..........................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................TGTCATCAAGGTAAGCGAATG.............	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................TGTCATCAAGGTAAGCGAATGC............	22	5	0.20	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................TTTGCTTCCCGTAGTCTCCGGAACACC...................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................GTCATCAAGGTAAGCGAATGCGTTG---GG...	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AAGCGAATGCGTTG---GGTT.	18	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................................TAGATTTGCTTCCCGTAGTCTCCGG.........................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................TTAGATTTGCTTCCCGTAGTCTCCGG.........................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.....................GACATGTCCCAGGTATACGA..........................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................TGACATGTCCCAGGTATACG...........................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................CATCAAGGTAAGCGAATGCGTT.........	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..................................TATACGATGCTTTTCTGGAAGAAG.........................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
....................................TACGATGCTTTTCTGGAAGAAGCTA......................................................................................................................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................TCTGGAAGAAGCTGCATTTCTTTTG...........................................................................................................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..............................................TTCTGGAAGAAGCTGCATTTCTTT.............................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..........TGCTCACTAATGACATGTCC.....................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
....................................TACGATGCTTTTCTGGAAGAAG.........................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................TCTGGAAGAAGCTGCATTT.................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	1	0	0
..............................................TTCTGGAAGAAGCTGCATTTC................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..........................................GCTTTTCTGGAAGAAGCTGCATTTC................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	1	0	0
.........................................TGCTTTTCTGGAAGAAGCTG......................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCATCAAGGTAAGCGAATGCGTT.........	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..........TGCTCACTAATGACATGTCCCA...................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...........................................CTTTTCTGGAAGAAGCTGCATTTCT...............................................................................................................................	25	6	0.17	1	0	0	1	0	0	0	0	0	0	0
...............................................TCTGGAAGAAGCTGCAT...................................................................................................................................	17	6	0.17	1	0	0	0	0	0	0	0	1	0	0
....................................TACGATGCTTTTCTGGAAGA...........................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	1	0
...........................................CTTTTCTGGAAGAAGCTGCATTTC................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
................................................................................TTAGATTTGCTTCCCGTAGTCTC............................................................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..............................................TTCTGGAAGAAGCTGCATC..................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	1	0
..GTATACCCTGCTCACTAATGACA..........................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................TCCCGTAGTCTCCGGAACACCTCTCG..............................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................TTCCCGTAGTCTCCGGAACACCTCTA...............................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................TCTGGAAGAAGCTGCATTTCC...............................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	1	0
.................TAATGACATGTCCCAGGTATACGATA........................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................TGGAAGAAGCTGCATTTCTTTTG...........................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................TTCCCGTAGTCTCCGGAACACCTCT................................................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................TCTCCGGAACACCTCTCGC.............................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................TCCCGTAGTCTCCGGAACACCTCT................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................TGGAAGAAGCTGCATTTCTTTTGGT.........................................................................................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................TAATGACATGTCCCAGGTATACGAAA........................................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............TCACTAATGACATGTCCCAG..................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GTGTATACCCCGCTCACTAATGACATGTCCCAGATATACGATGCTTTTCTGGAAAAAGCTGCATTTCTTTTGGTTTAATCTTAGATTGGCTTCCCGCAGTCTTCGGAAAACCTCTCGCAGATGGTCGACGTGTTCTTCCAGTGTCGCTCCGATGACAATGATGTCGTCGAGGTAAGCAAAGGCGTTG---GGTTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................TTAATCTTAGATTGGCTTCCCGCAG................................................................................................	25	19	1.00	19	0	18	0	0	0	1
..............................................................................................................................................................TGATGTCGTCGAGGTAAGCAAAGGC............	25	10	0.70	7	0	1	0	0	0	6
..............................................................................................................................................................TGATGTCGTCGAGGTAAGCAAAGG.............	24	10	0.40	4	0	3	1	0	0	0
..............................................................................................................................................................TGATGTCGTCGAGGTAAGCAAAGGCG...........	26	10	0.30	3	0	1	0	0	0	2
..........................................................................TTAATCTTAGATTGGCTTCCCGCA.................................................................................................	24	19	0.26	5	0	4	1	0	0	0
...........................................................................TAATCTTAGATTGGCTTCCCGCAG................................................................................................	24	19	0.26	5	0	4	1	0	0	0
......................................................................................................................................................................TCGAGGTAAGCAAAGGCGTTG---GGT..	24	19	0.21	4	0	4	0	0	0	0
..........................................................................TTAATCTTAGATTGGCTTCCCGCAGT...............................................................................................	26	19	0.21	4	0	4	0	0	0	0
...................................................................................................TCTTCGGAAAACCTCTCGCAGATGG.......................................................................	25	20	0.20	4	1	3	0	0	0	0
....................TGACATGTCCCAGATATACGATGCTT.....................................................................................................................................................	26	15	0.20	3	0	1	1	0	0	1
....................TGACATGTCCCAGATATACGATGCTTT....................................................................................................................................................	27	15	0.20	3	0	3	0	0	0	0
..........................................................................TTAATCTTAGATTGGCTTCCCGC..................................................................................................	23	19	0.16	3	0	3	0	0	0	0
..........................................................................TTAATCTTAGATTGGCTTCCCGCAGTC..............................................................................................	27	19	0.16	3	0	3	0	0	0	0
.....................................................................................................TTCGGAAAACCTCTCGCAGATGGTCG....................................................................	26	20	0.15	3	0	3	0	0	0	0
....................................................................................................CTTCGGAAAACCTCTCGCAGATGG.......................................................................	24	20	0.15	3	0	3	0	0	0	0
......................................................................................................TCGGAAAACCTCTCGCAGATGGTCGACG.................................................................	28	20	0.15	3	3	0	0	0	0	0
.....................GACATGTCCCAGATATACGATGCTT.....................................................................................................................................................	25	15	0.13	2	0	2	0	0	0	0
....................TGACATGTCCCAGATATACGATGCT......................................................................................................................................................	25	15	0.13	2	0	1	1	0	0	0
.......................................................................................................................................................................CGAGGTAAGCAAAGGCGTTG---GGT..	23	19	0.11	2	0	1	0	0	0	1
.......................................................................................................................................................................CGAGGTAAGCAAAGGCGTTG---G....	21	19	0.11	2	0	2	0	0	0	0
......................................................................................................................................................................TCGAGGTAAGCAAAGGCGTTG---GG...	23	19	0.11	2	0	2	0	0	0	0
.................................................................................................................................................................TGTCGTCGAGGTAAGCAAAGGC............	22	10	0.10	1	0	0	1	0	0	0
.....................................................................................................TTCGGAAAACCTCTCGCAGATGGT......................................................................	24	20	0.10	2	1	1	0	0	0	0
...................................................................................................TCTTCGGAAAACCTCTCGCAGATGGTC.....................................................................	27	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................ATGATGTCGTCGAGGTAAGC..................	20	10	0.10	1	1	0	0	0	0	0
...............................................................................................................................................................GATGTCGTCGAGGTAAGCAA................	20	10	0.10	1	0	1	0	0	0	0
.................................................................................................................................................................TGTCGTCGAGGTAAGCAAAGGCGT..........	24	10	0.10	1	0	0	1	0	0	0
..............................................................................................................................................................TGATGTCGTCGAGGTAAGCAAAG..............	23	10	0.10	1	0	0	0	0	0	1
........................ATGTCCCAGATATACGATGCTTTTC..................................................................................................................................................	25	14	0.07	1	0	1	0	0	0	0
..................................TATACGATGCTTTTCTGGAAAAAGCA.......................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0
.................TAATGACATGTCCCAGATATACGATGC.......................................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0
.................TAATGACATGTCCCAGATATACGATGCTT.....................................................................................................................................................	29	15	0.07	1	0	1	0	0	0	0
...............ACTAATGACATGTCCCAGATATACGA..........................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0
.............TCACTAATGACATGTCCCAGATATAC............................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0
.................TAATGACATGTCCCAGATATACGA..........................................................................................................................................................	24	16	0.06	1	0	1	0	0	0	0
................................................................TTCTTTTGGTTTAATCTTAGATTGGCT........................................................................................................	27	16	0.06	1	0	1	0	0	0	0
.................TAATGACATGTCCCAGATATA.............................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0
.................................................TGGAAAAAGCTGCATTTCTTTTGGT.........................................................................................................................	25	17	0.06	1	0	1	0	0	0	0
..............................................TTCTGGAAAAAGCTGCATTTCTTTTGGT.........................................................................................................................	28	17	0.06	1	0	1	0	0	0	0
..........................................GCTTTTCTGGAAAAAGCTGCATTT.................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0
...............................................................................CTTAGATTGGCTTCCCGCAG................................................................................................	20	19	0.05	1	0	1	0	0	0	0
.........................................................................TTTAATCTTAGATTGGCTTCCCGCAG................................................................................................	26	19	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................TCGAGGTAAGCAAAGGCGTTG---G....	22	19	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................CGAGGTAAGCAAAGGCGTTG---GGTT.	24	19	0.05	1	0	1	0	0	0	0
...........................................................................TAATCTTAGATTGGCTTCCCGCA.................................................................................................	23	19	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................GAGGTAAGCAAAGGCGTTG---GGT..	22	19	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................TCGTCGAGGTAAGCAAAGGCGTTG---.....	24	19	0.05	1	0	1	0	0	0	0
.........................................TGCTTTTCTGGAAAAAGCTG......................................................................................................................................	20	19	0.05	1	0	1	0	0	0	0
..........................................................................................................AAAACCTCTCGCAGATGGTCGACG.................................................................	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................CTTCGGAAAACCTCTCGCAGATGGT......................................................................	25	20	0.05	1	0	1	0	0	0	0
...................................................................................................TCTTCGGAAAACCTCTCGCAGATGGT......................................................................	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................TCGGAAAACCTCTCGCAGAT.........................................................................	20	20	0.05	1	0	1	0	0	0	0
.....................................................................................................TTCGGAAAACCTCTCGCAGATGGTC.....................................................................	25	20	0.05	1	0	1	0	0	0	0
...............................................TCTGGAAAAAGCTGCATT..................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.....................................................................................................TTCGGAAAACCTCTCGCAGATGG.......................................................................	23	20	0.05	1	0	1	0	0	0	0
...........................................................................................TCCCGCAGTCTTCGGAAAACCTCTCGCA............................................................................	28	20	0.05	1	0	1	0	0	0	0

droAna3

GCCAATTCCCTGACTCGTCATCCAGTGGCCCAGGTATAATAACTCTTCCCTGAAGAAATGGCACTAGTCCGTGTTTATTCTTAAGTTTGCCTCTTTCAGTCTACGGAATACTTCCTTAAAATTCGCCATGTGCACTTCCGTTGTGCGTCCAATCACGATGATGTCATCCTGATACGTAAATGCGTGC---GGATC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................TCTTCCCTGAAGAAATGGCAC...................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...........................................TCTTCCCTGAAGAAATGGCACT..................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droBip1

TCCGATCCCCTGGCTTGTTATCCGGTGGCCCAGGTAGAGCAGCTCCTGCCTGAAGAAATGACACTTTTCCGTACTTATCCGCAGGTTTGCCGCTCTCAACCTCCTGAATACCTCTTGTAGATTCCGCATATGCTCCTCCTTGGTGCGTCCGATCACTATGATGTCATCCTGATACGCGAATGCGTGT---GGAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTGGATACCTTGGTCGCTGATCACGTGTCCCAGATAGGCTATCTTCCTCTTGAAGAACGAGTACTTCTCCTGGTTGATCCGCAGGTTGGCTCTCCTTAGCCGTTGGAACACTTTGCGTAGGTTCTCCATGTGTTCATCGAGACTCGCTCCGATGACGATGATGTCATCGAGGTACGCGAATGCGTGT---GGGTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTGTATCCCGGCCTCGCTGATTACGTGGCCAAGATATTTTATACTCCGCTGGAAGAACTGGCACTTGTCTCGGTTGAGCCGGAGATTGGCCTCTCGGAGCCGTCGGAATACCTCGCGTAAGTTCCGTACGTGCTCGGAGAGTGTGGCCCCGACGACAATGATGTCGTCCAAGTAGGCGAAAGCGTGT---GGCTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTGAATGCCCTGGTCGCTGATCACGTGTCCGAGGTAGGCCAGTTTCCTCTTGAAGAATGAGCACTTTTCCTGGTTGATGCGCAGGTTGGCTCTCCTCAGTCGCTCGAAGACTTTGCGCAGGTTGTCCATGTGTTCCTCCAGGCTGGCTCCGATGACAATAATGTCGTCGAGATAGGCGAATGCGTCC---GGGTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTGGATACCCTGGTCACTGATCACATGTCCAAGGTAGGCCAGTTTTCTCTTGAAGAAGGAGCACTTTTCCTGGTTGATGCGCAGGTTAGCTCTCCTCAATCGTTCGAAAACTTTGCGCAGGTTGTCCATGTGTTCCCCTAGGCTGGCCCCAATGACAATAATGTCATCGAGGTAGGCGAACGCGTAT---GGGTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTGAATTCCCTCCTCACTGATGACGTGTCCCAAGTACCCCAGGCTGCGCTTAAAGAAACTGCATTTCTTCGCGTTGAGACGAAGGTTCGCCTTTCGTAGCCGTCGGAATACTTCTTGTAAATGCTGCACATGCTCCTCCAGAGTGCGGCCGATGATGATGATGTCATCCAAATACGCAAACGCGTTG---GGCTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTGGATACCCTGGTCACTGATCACATGTCCAAGGTAGGCCAGTTTTCTCTTGAAGAAGGAGCACTTTTCCTGGTTGATGCGCAGGTTAGCTCTCCTCAATCGGTCGAATACTTTGCGTAAGTTGTCCATGTGTTCCCCTAGACTGGCTCCAATGACAATAATGTCATCGAGGTAGGCGAACGCGTAT---GGGTC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CTGTATCCCGGCCTCGCTGATGACGTGGCCAAGATATTTTATGCTCCGCTGGAAAAACTGGCATTTGTCCCGATTGAGCCGGAGGTTAGCTTCTCGGAGCCGTCGGAACACCTCGCATAGGTTCCGCACGTGCTCAGAGAGTGTGGACCCGACGACGATGATGTCGTCTACGTAGGCAAAGGCGTGT---GCTTC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTTGATCCCACGGTCGCCCACTATGTGTCCCAGATACTTTAGTTTCTTCTAAAAAATGTGGCACTTATCCGGGTTGATCTTCAGATTGGCTTGTTGCAATCTTCTGAACACCTCCTTCAGGTTC-CCATGTGCTTCTTCTTATTCTGCCCGATTACGACAATATCGTCCAAGTATCTGAACGCGAAT---GGTTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........CGGTCGCCCACTATGTGTCCCA...................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATCGTCCAAGTATCTGAACGCGAA.........	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................TCTAAAAAATGTGGCACTTATCCGGG..........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TATCCGGGTTGATCTTCAGATTGGCT........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TATCCGGGTTGATCTTCAGATTGG..........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................TGCCCGATTACGACAATATCGTC...........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTGATCCCACGGTCGCCCACT.............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................ATGTGGCACTTATCCGGGTTGT......................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATCGTCCAAGTATCTGAACGCGA..........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TCCCAGATACTTTAGTCG......................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TATCCGGGTTGATCTTCTA...............................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAAAATCCCGGCCTCACTGATTACGGGTCCAAGATATCGAATGCTCCGTTGGAGGAACTGGCACTTGTCCCTGT------------TGGCTTCCCTAAGCCGTCGGAACACCTCGCGG-TATTCCGTACGCGCTCCTGTAGAGTAGATCCGATCACGATGATGTCATCGAGATAGGCCAAGGCATGC---GACTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................TCCGATCACGATGATGTCATCGAGA.......................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................................................ATTCCGTACGCGCTCCTGTAGAGTAG.................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATCGAGATAGGCCAAGGCATGC---GAC..	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................TGGCTTCCCTAAGCCGTCGGAACAC....................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...............................................GTTGGAGGAACTGGCACTTGTC..............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................TGCTCCGTTGGAGGAACTGGCACTTG................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................TTCCGTACGCGCTCCT..........................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................AGATCCGATCACGATGATGTCATCGAGA.......................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................CGTCGGAACACCTCGCGG-TAT.........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................AGAGTAGATCCGATCACGATG...................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................GTTGGAGGAACTGGCACTTGTCCC............................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................TGCTCCGTTGGAGGAACTGGCACTTGT...............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................TGTCATCGAGATAGGCCAAGGCAAAA---.....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................TCCGTTGGAGGAACTGGCACTTG................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

TCCAATACCTTGATTCGTCACGCGGTGACCCAAGTATTGTAGTTCCTTCCTAAAGAATTTGCACTTATCCGCATTCACTTTCAGGTTCGCCGCTCGTAGCCTCTTGAACACCTCCCTCAAGTTTCGCATATGTTCCTGCAGCGTCCGTCCGATGACTATGATGTCGTCCTGATATGCGAACGCGTGC---GGCAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGC..................	24	20	3.50	70	65	0	5	0
.............................................................CACTTATCCGCATTCACTTTCAGGT.............................................................................................................	25	20	3.50	70	52	0	14	4
.............................................................CACTTATCCGCATTCACTTTCAGGTT............................................................................................................	26	20	2.60	52	47	0	3	2
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGCGA................	26	20	2.25	45	31	1	13	0
.............................................................CACTTATCCGCATTCACTTTCAGG..............................................................................................................	24	20	2.20	44	44	0	0	0
...AATACCTTGATTCGTCACGCGGTGA.......................................................................................................................................................................	25	20	2.10	42	31	0	9	2
...AATACCTTGATTCGTCACGCGG..........................................................................................................................................................................	22	20	1.90	38	36	0	0	2
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGCG.................	25	20	1.85	37	25	0	10	2
...........................................................TGCACTTATCCGCATTCACTTTCAGG..............................................................................................................	26	20	1.45	29	29	0	0	0
..CAATACCTTGATTCGTCACGCGGT.........................................................................................................................................................................	24	20	1.45	29	27	0	2	0
.............................................................CACTTATCCGCATTCACTTTCAGGTTC...........................................................................................................	27	20	1.30	26	26	0	0	0
.........................................................................................................................................................GACTATGATGTCGTCCTGATATG...................	23	20	1.15	23	20	0	3	0
...AATACCTTGATTCGTCACGCGGTGAC......................................................................................................................................................................	26	20	1.15	23	23	0	0	0
...........................................................TGCACTTATCCGCATTCACTTTCAGGT.............................................................................................................	27	20	1.15	23	23	0	0	0
...AATACCTTGATTCGTCACGCGGTGACCC....................................................................................................................................................................	28	20	0.95	19	19	0	0	0
.......................................................................................CGCCGCTCGTAGCCTCTTGAACACC...................................................................................	25	20	0.90	18	17	1	0	0
......................................................................................TCGCCGCTCGTAGCCTCTTGAACACC...................................................................................	26	20	0.90	18	18	0	0	0
.......................................................................................CGCCGCTCGTAGCCTCTTGAACACCT..................................................................................	26	20	0.90	18	17	0	1	0
...........................................................TGCACTTATCCGCATTCACTTTCAGGTT............................................................................................................	28	20	0.85	17	17	0	0	0
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGCGAA...............	27	20	0.80	16	12	1	2	1
...........................................................TGCACTTATCCGCATTCACTTTC.................................................................................................................	23	20	0.75	15	15	0	0	0
...........................................................TGCACTTATCCGCATTCACTTTCAG...............................................................................................................	25	20	0.70	14	14	0	0	0
...........................................................TGCACTTATCCGCATTCACTTTCA................................................................................................................	24	20	0.60	12	12	0	0	0
......................................................................................TCGCCGCTCGTAGCCTCTTGAACACCT..................................................................................	27	20	0.50	10	9	1	0	0
..................................TATTGTAGTTCCTTCCTAAAGAATT........................................................................................................................................	25	20	0.50	10	9	0	1	0
......................................................................................TCGCCGCTCGTAGCCTCTTGA........................................................................................	21	20	0.50	10	5	0	5	0
........................................................................................GCCGCTCGTAGCCTCTTGAACACC...................................................................................	24	20	0.45	9	9	0	0	0
......................................................................................TCGCCGCTCGTAGCCTCTTGAACAC....................................................................................	25	20	0.45	9	8	0	1	0
.............................................................CACTTATCCGCATTCACTTTCAG...............................................................................................................	23	20	0.40	8	7	0	1	0
......................................................................................TCGCCGCTCGTAGCCTCTTGAACA.....................................................................................	24	20	0.35	7	7	0	0	0
...AATACCTTGATTCGTCACGCGGT.........................................................................................................................................................................	23	20	0.30	6	0	1	4	1
.....................................................................................TTCGCCGCTCGTAGCCTCTTGAACACC...................................................................................	27	20	0.30	6	6	0	0	0
...........................................................TGCACTTATCCGCATTCACTTTCAGGTTC...........................................................................................................	29	20	0.30	6	6	0	0	0
..........................................................................................CGCTCGTAGCCTCTTGAACACCT..................................................................................	23	20	0.30	6	6	0	0	0
........................................................................................GCCGCTCGTAGCCTCTTGAACAC....................................................................................	23	20	0.25	5	5	0	0	0
..CAATACCTTGATTCGTCACGCGG..........................................................................................................................................................................	23	20	0.25	5	0	0	5	0
......................................................................................TCGCCGCTCGTAGCCTCTTGAAC......................................................................................	23	20	0.25	5	5	0	0	0
..............................................................ACTTATCCGCATTCACTTTCAGG..............................................................................................................	23	20	0.25	5	5	0	0	0
........................................................................................GCCGCTCGTAGCCTCTTGAACACCTC.................................................................................	26	20	0.25	5	5	0	0	0
...............................AAGTATTGTAGTTCCTTCCTAAAG............................................................................................................................................	24	14	0.21	3	3	0	0	0
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGCGT................	26	20	0.20	4	4	0	0	0
...........................................................................................................................................AGCGTCCGTCCGATGACTATGATGTC..............................	26	20	0.20	4	4	0	0	0
...........................................TCCTTCCTAAAGAATTTGCACTTATC..............................................................................................................................	26	20	0.20	4	4	0	0	0
..............................................................ACTTATCCGCATTCACTTTCAGGT.............................................................................................................	24	20	0.20	4	4	0	0	0
....ATACCTTGATTCGTCACGCGGTGACC.....................................................................................................................................................................	26	20	0.20	4	4	0	0	0
...AATACCTTGATTCGTCACGCGGTGT.......................................................................................................................................................................	25	20	0.20	4	4	0	0	0
...AATACCTTGATTCGTCACGCGGTGAA......................................................................................................................................................................	26	20	0.20	4	4	0	0	0
....................CGCGGTGACCCAAGTATTGTAGTTC......................................................................................................................................................	25	16	0.19	3	1	0	2	0
...................ACGCGGTGACCCAAGTATTGTAGT........................................................................................................................................................	24	16	0.19	3	2	0	1	0
............................................................GCACTTATCCGCATTCACTTTCAGG..............................................................................................................	25	20	0.15	3	3	0	0	0
...............................................................................................................................................TCCGTCCGATGACTATGATGTCGTCC..........................	26	20	0.15	3	3	0	0	0
.....................................................................................TTCGCCGCTCGTAGCCTCTTGAACACCT..................................................................................	28	20	0.15	3	3	0	0	0
...AATACCTTGATTCGTCACGCG...........................................................................................................................................................................	21	20	0.15	3	3	0	0	0
.................................................................................................................................................................TGTCGTCCTGATATGCGAACGCG...........	23	20	0.15	3	3	0	0	0
...AATACCTTGATTCGTCACGCGGTGACCCA...................................................................................................................................................................	29	20	0.15	3	3	0	0	0
........................................................................................GCCGCTCGTAGCCTCTTGAACACCT..................................................................................	25	20	0.15	3	3	0	0	0
...AATACCTTGATTCGTCACGC............................................................................................................................................................................	20	20	0.15	3	2	0	1	0
.....................................TGTAGTTCCTTCCTAAAGAATT........................................................................................................................................	22	20	0.15	3	3	0	0	0
..................................TATTGTAGTTCCTTCCTAAAGA...........................................................................................................................................	22	20	0.15	3	2	0	0	1
..............................................................ACTTATCCGCATTCACTTTCAGGTT............................................................................................................	25	20	0.15	3	3	0	0	0
.CCAATACCTTGATTCGTCACGCGG..........................................................................................................................................................................	24	20	0.15	3	3	0	0	0
.................................................................................................................................................................TGTCGTCCTGATATGCGAACGCGTGC---.....	26	20	0.15	3	0	1	2	0
................................AGTATTGTAGTTCCTTCCTAAAG............................................................................................................................................	23	14	0.14	2	1	0	1	0
................................AGTATTGTAGTTCCTTCCTAAAGAAT.........................................................................................................................................	26	14	0.14	2	1	0	1	0
....................CGCGGTGACCCAAGTATTGTAGTTCC.....................................................................................................................................................	26	16	0.13	2	2	0	0	0
.........................................................................................................................................................GACTATGATGTCGTCCTGATA.....................	21	20	0.10	2	2	0	0	0
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGCGAAA..............	28	20	0.10	2	2	0	0	0
.......................................................................................CGCCGCTCGTAGCCTCTTGAACACCTT.................................................................................	27	20	0.10	2	2	0	0	0
....................................TTGTAGTTCCTTCCTAAAGAATTTG......................................................................................................................................	25	20	0.10	2	2	0	0	0
...AATACCTTGATTCGTCACGCGGTGACC.....................................................................................................................................................................	27	20	0.10	2	0	0	1	1
......................................................................................TCGCCGCTCGTAGCCTCTTGAAA......................................................................................	23	20	0.10	2	2	0	0	0
........................................................................................GCCGCTCGTAGCCTCTTGAACACCTCC................................................................................	27	20	0.10	2	2	0	0	0
....ATACCTTGATTCGTCACGCGGTG........................................................................................................................................................................	23	20	0.10	2	2	0	0	0
.CCAATACCTTGATTCGTCACGCGGT.........................................................................................................................................................................	25	20	0.10	2	2	0	0	0
..................................TATTGTAGTTCCTTCCTAAAGAATTTG......................................................................................................................................	27	20	0.10	2	2	0	0	0
....ATACCTTGATTCGTCACGCGGT.........................................................................................................................................................................	22	20	0.10	2	2	0	0	0
....ATACCTTGATTCGTCACGCGGTGACCC....................................................................................................................................................................	27	20	0.10	2	2	0	0	0
........................................................................................................................................TGCAGCGTCCGTCCGATGACT......................................	21	20	0.10	2	0	0	2	0
..CAATACCTTGATTCGTCACGCGGTGACCC....................................................................................................................................................................	29	20	0.10	2	2	0	0	0
..CAATACCTTGATTCGTCACGCGGTGA.......................................................................................................................................................................	26	20	0.10	2	2	0	0	0
......................................................................................TCGCCGCTCGTAGCCTCTTG.........................................................................................	20	20	0.10	2	2	0	0	0
...AATACCTTGATTCGTCACGCGGTG........................................................................................................................................................................	24	20	0.10	2	0	0	0	2
......................................................................................TCGCCGCTCGTAGCCTCTTGATT......................................................................................	23	20	0.10	2	2	0	0	0
................................................................TTATCCGCATTCACTTTCAGGTTCGC.........................................................................................................	26	20	0.10	2	2	0	0	0
...............................AAGTATTGTAGTTCCTTCCTAAAGAA..........................................................................................................................................	26	14	0.07	1	1	0	0	0
.................................GTATTGTAGTTCCTTCCTAAAGAATTTG......................................................................................................................................	28	14	0.07	1	1	0	0	0
...............................AAGTATTGTAGTTCCTTCCTAAAGAATT........................................................................................................................................	28	14	0.07	1	1	0	0	0
...............................AAGTATTGTAGTTCCTTCCTAAAGAAT.........................................................................................................................................	27	14	0.07	1	1	0	0	0
.........................TGACCCAAGTATTGTAGTTCCTTCC.................................................................................................................................................	25	14	0.07	1	1	0	0	0
...............................AAGTATTGTAGTTCCTTCCTAAAGA...........................................................................................................................................	25	14	0.07	1	1	0	0	0
.....................GCGGTGACCCAAGTATTGTAGTTC......................................................................................................................................................	24	16	0.06	1	1	0	0	0
...................ACGCGGTGACCCAAGTATTGTAGTTC......................................................................................................................................................	26	16	0.06	1	1	0	0	0
...................ACGCGGTGACCCAAGTATTGTAGTTCC.....................................................................................................................................................	27	16	0.06	1	1	0	0	0
..........................................................................................................................................CAGCGTCCGTCCGATGACTATGAT.................................	24	20	0.05	1	0	0	1	0
TCCAATACCTTGATTCGTCACGCGG..........................................................................................................................................................................	25	20	0.05	1	0	0	1	0
.....................................................................................................................................TCCTGCAGCGTCCGTCCGAT..........................................	20	20	0.05	1	0	0	0	1
..................................................................................................................................................GTCCGATGACTATGATGTCGT............................	21	20	0.05	1	0	1	0	0
...AATACCTTGATTCGTCACGCGGAT........................................................................................................................................................................	24	20	0.05	1	1	0	0	0
............................................................GCACTTATCCGCATTCACTTTCAGGTTC...........................................................................................................	28	20	0.05	1	1	0	0	0
...................................ATTGTAGTTCCTTCCTAAAGAATT........................................................................................................................................	24	20	0.05	1	1	0	0	0
............................................................................................................................................................TATGATGTCGTCCTGATATGCGA................	23	20	0.05	1	0	0	1	0
......................................GTAGTTCCTTCCTAAAGAATTTG......................................................................................................................................	23	20	0.05	1	1	0	0	0
..CAATACCTTGATTCGTCACGCGGA.........................................................................................................................................................................	24	20	0.05	1	1	0	0	0
..........................................................................................................................................................ACTATGATGTCGTCCTGATAT....................	21	20	0.05	1	0	0	1	0
.............................................................................................................................................................ATGATGTCGTCCTGATATGCGAA...............	23	20	0.05	1	1	0	0	0
...............................................................................................................................................TCCGTCCGATGACTATGATGTCG.............................	23	20	0.05	1	1	0	0	0
......................................................................................................................................CCTGCAGCGTCCGTCCGAT..........................................	19	20	0.05	1	1	0	0	0
.......................................................................................CGCCGCTCGTAGCCTCTTGAAC......................................................................................	22	20	0.05	1	0	0	1	0
................................................................................................................................TATGTTCCTGCAGCGTCCGTCCGA...........................................	24	20	0.05	1	1	0	0	0
...........................................................TGCACTTATCCGCATTCACTTT..................................................................................................................	22	20	0.05	1	1	0	0	0
................................................................TTATCCGCATTCACTTTCAGG..............................................................................................................	21	20	0.05	1	1	0	0	0
.........................................GTTCCTTCCTAAAGAATTTG......................................................................................................................................	20	20	0.05	1	1	0	0	0
..CAATACCTTGATTCGTCACGCGT..........................................................................................................................................................................	23	20	0.05	1	1	0	0	0
............................................................GCACTTATCCGCATTCACTTTCAGGT.............................................................................................................	26	20	0.05	1	1	0	0	0
...AATACCTTGATTCGTCACGCGGTGTT......................................................................................................................................................................	26	20	0.05	1	1	0	0	0
..........................................................................................CGCTCGTAGCCTCTTGAACAC....................................................................................	21	20	0.05	1	0	0	1	0
...................................................................TCCGCATTCACTTTCAGGTTCGCCGC......................................................................................................	26	20	0.05	1	1	0	0	0
..........................................................................................................................................................ACTATGATGTCGTCCTGATATGCGAT...............	26	20	0.05	1	1	0	0	0
...AATACCTTGATTCGTCACG.............................................................................................................................................................................	19	20	0.05	1	1	0	0	0
..................................................................ATCCGCATTCACTTTCAGGTTC...........................................................................................................	22	20	0.05	1	1	0	0	0
.............................................................CACTTATCCGCATTCACTTTCAGGTTT...........................................................................................................	27	20	0.05	1	1	0	0	0
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGCGG................	26	20	0.05	1	0	0	1	0
..........................................................................................CGCTCGTAGCCTCTTGAACACC...................................................................................	22	20	0.05	1	1	0	0	0
..............................................................................................................................CATATGTTCCTGCAGCGTCCGT...............................................	22	20	0.05	1	0	0	1	0
..................................................TAAAGAATTTGCACTTATCCGCATT........................................................................................................................	25	20	0.05	1	1	0	0	0
..................................TATTGTAGTTCCTTCCTAAAGAAT.........................................................................................................................................	24	20	0.05	1	1	0	0	0
..............TCGTCACGCGGTGACCCAAGTAT..............................................................................................................................................................	23	20	0.05	1	0	0	1	0
..........................................TTCCTTCCTAAAGAATTTGCACTTA................................................................................................................................	25	20	0.05	1	0	0	1	0
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGCTT................	26	20	0.05	1	1	0	0	0
....................................................................................................................................................................CGTCCTGATATGCGAACGCGTGC---GGCA.	27	20	0.05	1	0	0	1	0
......................................................................................TCGCCGCTCGTAGCCTCTTGAACACCC..................................................................................	27	20	0.05	1	1	0	0	0
.............................................................................................TCGTAGCCTCTTGAACACCTT.................................................................................	21	20	0.05	1	1	0	0	0
.....................................................................................TTCGCCGCTCGTAGCCTCTTG.........................................................................................	21	20	0.05	1	1	0	0	0
..............................................................................................................................CATATGTTCCTGCAGCGTCCGTC..............................................	23	20	0.05	1	0	0	1	0
...................................................................TCCGCATTCACTTTCAGG..............................................................................................................	18	20	0.05	1	1	0	0	0
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGCGATT..............	28	20	0.05	1	1	0	0	0
..............................................................................TTTCAGGTTCGCCGCTCGTAGC...............................................................................................	22	20	0.05	1	0	0	1	0
...AATACCTTGATTCGTCACGCGTGA........................................................................................................................................................................	24	20	0.05	1	1	0	0	0
..............................................................ACTTATCCGCATTCACTTTCAGGG.............................................................................................................	24	20	0.05	1	1	0	0	0
.............................................................................................TCGTAGCCTCTTGAACACC...................................................................................	19	20	0.05	1	1	0	0	0
...........................................................................................................................................................CTATGATGTCGTCCTGATATGCGA................	24	20	0.05	1	0	0	1	0
..........................................TTCCTTCCTAAAGAATTTG......................................................................................................................................	19	20	0.05	1	1	0	0	0
.........................................................................................CCGCTCGTAGCCTCTTGAACACCT..................................................................................	24	20	0.05	1	1	0	0	0
.............................................................................................TCGTAGCCTCTTGAACACCTTG................................................................................	22	20	0.05	1	1	0	0	0
.....TACCTTGATTCGTCACGCGGTGACCC....................................................................................................................................................................	26	20	0.05	1	1	0	0	0
...........................................................................................GCTCGTAGCCTCTTGAACACC...................................................................................	21	20	0.05	1	1	0	0	0
.......................................................................................CGCCGCTCGTAGCCTCTTGAACACCTCC................................................................................	28	20	0.05	1	1	0	0	0
.......................................................................................CGCCGCTCGTAGCCTCTTGAACACT...................................................................................	25	20	0.05	1	1	0	0	0
.............................................................CACTTATCCGCATTCACTTTCAGGA.............................................................................................................	25	20	0.05	1	1	0	0	0
.....................................TGTAGTTCCTTCCTAAAGAATTT.......................................................................................................................................	23	20	0.05	1	1	0	0	0
.....................................TGTAGTTCCTTCCTAAAGAATTTT......................................................................................................................................	24	20	0.05	1	0	0	1	0
......................................................................................TCGCCGCTCGTAGCCTCTTGAA.......................................................................................	22	20	0.05	1	0	0	1	0
..........................................................TTGCACTTATCCGCATTCACTTTCAGG..............................................................................................................	27	20	0.05	1	1	0	0	0
....ATACCTTGATTCGTCACGCGG..........................................................................................................................................................................	21	20	0.05	1	1	0	0	0
........................................................................................................................................................TGACTATGATGTCGTCCTGATA.....................	22	20	0.05	1	0	0	0	1
.....................................................................................TTCGCCGCTCGTAGCCTCTTGAACA.....................................................................................	25	20	0.05	1	1	0	0	0
...........................................................................................................................................................CTATGATGTCGTCCTGATATGCGAA...............	25	20	0.05	1	1	0	0	0
.....................................................................CGCATTCACTTTCAGGTTCGCCGCT.....................................................................................................	25	20	0.05	1	0	0	1	0
....................................................................................................................................................................CGTCCTGATATGCGAACGCGTGC---GGC..	26	20	0.05	1	1	0	0	0
.............................................................CACTTATCCGCATTCACTTTCA................................................................................................................	22	20	0.05	1	1	0	0	0
.....................................................................CGCATTCACTTTCAGGTTC...........................................................................................................	19	20	0.05	1	1	0	0	0
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGCT.................	25	20	0.05	1	1	0	0	0
..CAATACCTTGATTCGTCACGCGGTGACC.....................................................................................................................................................................	28	20	0.05	1	1	0	0	0
......................................................................................TCGCCGCTCGTAGCCTCTTGAACACCTC.................................................................................	28	20	0.05	1	0	0	0	1
.......................................................................................CGCCGCTCGTAGCCTCTTGAACACCTC.................................................................................	27	20	0.05	1	1	0	0	0
.....................................TGTAGTTCCTTCCTAAAGAATTTGC.....................................................................................................................................	25	20	0.05	1	1	0	0	0
.................................................................TATCCGCATTCACTTTCAG...............................................................................................................	19	20	0.05	1	1	0	0	0
............................................................................................CTCGTAGCCTCTTGAACACCTCC................................................................................	23	20	0.05	1	1	0	0	0
.....................................................................................................................................TCCTGCAGCGTCCGTCCGATGACTA.....................................	25	20	0.05	1	1	0	0	0
..........................................................................................CGCTCGTAGCCTCTTGAACACCTC.................................................................................	24	20	0.05	1	1	0	0	0
..........TGATTCGTCACGCGGTGACCCAAG.................................................................................................................................................................	24	20	0.05	1	1	0	0	0
.......................................................................................CGCCGCTCGTAGCCTCTTGAAA......................................................................................	22	20	0.05	1	0	0	1	0
.............................................................................................................................GCATATGTTCCTGCAGCGTCCGT...............................................	23	20	0.05	1	0	0	1	0
............................................................................................................................................................TATGATGTCGTCCTGATATGC..................	21	20	0.05	1	0	1	0	0
........................................................................................................................................TGCAGCGTCCGTCCGATGACTATGA..................................	25	20	0.05	1	1	0	0	0
..............TCGTCACGCGGTGACCCAAGTA...............................................................................................................................................................	22	20	0.05	1	1	0	0	0
.........TTGATTCGTCACGCGGTGACCCAAG.................................................................................................................................................................	25	20	0.05	1	0	0	1	0
..............................................................................................CGTAGCCTCTTGAACACCTC.................................................................................	20	20	0.05	1	1	0	0	0
.......................................................................................CGCCGCTCGTAGCCTCTTGAACA.....................................................................................	23	20	0.05	1	1	0	0	0
...............................................................CTTATCCGCATTCACTTTCAGGTT............................................................................................................	24	20	0.05	1	1	0	0	0
.....TACCTTGATTCGTCACGCGGTGACCCA...................................................................................................................................................................	27	20	0.05	1	1	0	0	0
...........................................................TGCACTTATCCGCATTCACTTTCAGGTC............................................................................................................	28	20	0.05	1	1	0	0	0
.................................................................................................................................................................TGTCGTCCTGATATGCGAACG.............	21	20	0.05	1	1	0	0	0
.....................................TGTAGTTCCTTCCTAAAGA...........................................................................................................................................	19	20	0.05	1	0	0	1	0
.......................................................................................CGCCGCTCGTAGCCTCTTGAACACCTA.................................................................................	27	20	0.05	1	1	0	0	0
.......CCTTGATTCGTCACGCGGTGACCCAA..................................................................................................................................................................	26	20	0.05	1	1	0	0	0
.....................................TGTAGTTCCTTCCTAAAGAATTTGCAC...................................................................................................................................	27	20	0.05	1	1	0	0	0
..........................................................................................................................................................ACTATGATGTCGTCCTGATATGCGTT...............	26	20	0.05	1	1	0	0	0
..CAATACCTTGATTCGTCACGCGGG.........................................................................................................................................................................	24	20	0.05	1	1	0	0	0
.............................................................CACTTATCCGCATTCACTTTCAGGTTCG..........................................................................................................	28	20	0.05	1	1	0	0	0
................................................................................................................................TATGTTCCTGCAGCGTCCGTC..............................................	21	20	0.05	1	0	0	0	1
........................................................................................................................................................TGACTATGATGTCGTCCTGATATGCGA................	27	20	0.05	1	1	0	0	0
............................................................................................................................................................TATGATGTCGTCCTGATATGCGAAC..............	25	20	0.05	1	1	0	0	0
.......................................................................................CGCCGCTCGTAGCCTCTTG.........................................................................................	19	20	0.05	1	1	0	0	0
.........................................................................................................................................................GACTATGATGTCGTCCTGATATGCGAAC..............	28	20	0.05	1	1	0	0	0
....................................TTGTAGTTCCTTCCTAAAGAATTTGA.....................................................................................................................................	26	20	0.05	1	1	0	0	0
............................................................GCACTTATCCGCATTCACTTTCAGGTT............................................................................................................	27	20	0.05	1	1	0	0	0
................................................................................TCAGGTTCGCCGCTCGTAG................................................................................................	19	20	0.05	1	1	0	0	0
TCCAATACCTTGATTCGTCACGCG...........................................................................................................................................................................	24	20	0.05	1	0	0	1	0
........................................................................ATTCACTTTCAGGTTCGCCGCTCGTAG................................................................................................	27	20	0.05	1	1	0	0	0
............................................................GCACTTATCCGCATTCACTTTC.................................................................................................................	22	20	0.05	1	1	0	0	0

droYak3

ATGGATTCCGGCCTCGCTGATGACGTGTCTGAGATATCGTATACTGCGCTGGAAGAACTGGCTCTTGTCTCGGTTGAGGCGGAGGTTGGCTTCCCTCAGACGTCGAAACACTTCCCTTAAGTTCCGTACGTGCTCCTGGAGTGTAGACCCGATCACTATGGTATCATCGAGATAGGCAAAGGCATGC---GGTTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................TCCTGGAGTGTAGACCCGATCACTA.....................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TCCGATACCCTGATCCGTCACGCGGTGGCCCAAGTATTGCATTACCTTCCTGAAGAATTTGCACTTATCCGCATTCACCTTCAGGTTCGCCGCCCGCAGCCTCCGGAAAACCTCCTTCAAGTTGCGCACATGCTCTTGCAGTGTCCGTCCGATCACTATGATATCGTCTTGATATGCAAAAGCGTGC---GGCAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................TATGATATCGTCTTGATATGCAAAAGCG...........	28	1	6.00	6	0	0	0	0	0	0	6
.................................................CTGAAGAATTTGCACTTATCCGCATT........................................................................................................................	26	12	2.42	29	20	0	0	0	1	0	8
..................................................TGAAGAATTTGCACTTATCCGCATT........................................................................................................................	25	15	1.47	22	16	0	0	0	5	1	0
..................CACGCGGTGGCCCAAGTATTGCATTACC.....................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................CATGCTCTTGCAGTGTCCGTCCGATC.........................................	26	1	1.00	1	1	0	0	0	0	0	0
...........................................................................CACCTTCAGGTTCGCCGCCCGCAGC...............................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................TGCTCTTGCAGTGTCCGTCCGATCAC.......................................	26	3	1.00	3	3	0	0	0	0	0	0
...........................................................................................................AAACCTCCTTCAAGTTGCGCACATGCTCT...........................................................	29	2	0.50	1	1	0	0	0	0	0	0
................................................................TTATCCGCATTCACCTTCAGGTTCGCCG.......................................................................................................	28	2	0.50	1	1	0	0	0	0	0	0
..........................................................................................................................TGCGCACATGCTCTTGCAGTGTCCG................................................	25	2	0.50	1	0	0	0	0	0	0	1
TCCGATACCCTGATCCGTCACGCGG..........................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0	0
................................................................TTATCCGCATTCACCTTCAGGTTCGC.........................................................................................................	26	2	0.50	1	1	0	0	0	0	0	0
................................................CCTGAAGAATTTGCACTTATCCGCATT........................................................................................................................	27	2	0.50	1	1	0	0	0	0	0	0
...........................................................TGCACTTATCCGCATTCACCTTCAGGTT............................................................................................................	28	2	0.50	1	1	0	0	0	0	0	0
................................................CCTGAAGAATTTGCACTTATCCGCA..........................................................................................................................	25	3	0.33	1	1	0	0	0	0	0	0
TCCGATACCCTGATCCGTCACG.............................................................................................................................................................................	22	3	0.33	1	1	0	0	0	0	0	0
........................................................................................................................................TGCAGTGTCCGTCCGATCACTATGATA................................	27	4	0.25	1	1	0	0	0	0	0	0
................................................................................TCAGGTTCGCCGCCCGCAGCCTCCGG.........................................................................................	26	4	0.25	1	1	0	0	0	0	0	0
................................................................................TCAGGTTCGCCGCCCGCAGCCTCCG..........................................................................................	25	4	0.25	1	1	0	0	0	0	0	0
...............................................................................TTCAGGTTCGCCGCCCGCAGCCTCC...........................................................................................	25	4	0.25	1	1	0	0	0	0	0	0
................................................................................TCAGGTTCGCCGCCCGCAGCC..............................................................................................	21	5	0.20	1	1	0	0	0	0	0	0
..................................................................................AGGTTCGCCGCCCGCAGCCTCCG..........................................................................................	23	5	0.20	1	1	0	0	0	0	0	0
.....................................................................................TTCGCCGCCCGCAGCCTCCGGAAAAC....................................................................................	26	5	0.20	1	1	0	0	0	0	0	0
....................................................................................GTTCGCCGCCCGCAGCCTCCGGAA.......................................................................................	24	5	0.20	1	1	0	0	0	0	0	0
.....................................................................................TTCGCCGCCCGCAGCCTCCGGA........................................................................................	22	5	0.20	1	1	0	0	0	0	0	0
..................................................TGAAGAATTTGCACTTATCCGCAT.........................................................................................................................	24	16	0.06	1	0	0	0	0	1	0	0
...................................................GAAGAATTTGCACTTATCCGCATT........................................................................................................................	24	16	0.06	1	1	0	0	0	0	0	0
..................................................TGAAGAATTTGCACTTATCCGCA..........................................................................................................................	23	18	0.06	1	1	0	0	0	0	0	0

-31.5	-31.5	-31.2	-31.2

dmo_135

scaffold_1990:6919-7010 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads