ID:

dmo_1347

 Coordinate:

scaffold_6498:1272936-1273086 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.3 -15.7 -15.5 -15.3

Flybase annnotation

exon [dmoj_GLEANR_14180:8]; CDS [Dmoj\GI14101-cds]; intron [Dmoj\GI14101-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
Homo6DNAhAT-Pegasus-
mature
  1. scaffold_6460:127878-127903 +
  2. scaffold_6473:12859795-12859820 +
  3. scaffold_6482:428253-428278 +
  4. scaffold_6482:1296335-1296360 +
  5. scaffold_6482:1830625-1830650 +
  6. scaffold_6482:2190902-2190927 +
  7. scaffold_6482:2313190-2313215 +
  8. scaffold_6482:2633717-2633742 +
  9. scaffold_6498:512117-512142 +
  10. dmo_1347  scaffold_6498:1273017-1273042 +
  11. scaffold_6498:1785620-1785645 +
  12. scaffold_6498:2539842-2539867 +
  13. scaffold_6500:21400066-21400091 +
  14. scaffold_6500:24712586-24712611 +
  15. scaffold_6500:29927212-29927237 +
  16. scaffold_6500:31117332-31117357 +
  17. scaffold_6540:3055140-3055165 +
  18. scaffold_6540:3611400-3611425 +
  19. scaffold_6541:831077-831102 +
  20. scaffold_6541:1490625-1490650 +
  21. scaffold_6473:1583618-1583643 +
  22. scaffold_6482:2612816-2612841 +
  23. scaffold_6498:373184-373209 +
  24. scaffold_6498:1179285-1179310 +
  25. scaffold_6498:1966302-1966327 +
  26. scaffold_6498:2720721-2720746 +
  27. scaffold_6500:31318662-31318687 +
  28. scaffold_6500:32023838-32023863 +
  29. scaffold_6540:21459546-21459571 +
  30. scaffold_6540:29997267-29997292 +
  31. scaffold_6541:1573759-1573784 +
  32. scaffold_140:390-415 +
  33. scaffold_3887:3402-3427 +
  34. scaffold_3917:3223-3248 +
  35. scaffold_6482:1771862-1771887 +
  36. scaffold_6482:2079810-2079835 +
  37. scaffold_6482:2549817-2549842 +
  38. scaffold_6482:2644124-2644149 +
  39. scaffold_6496:25734686-25734711 +
  40. scaffold_6496:26359219-26359244 +
  41. scaffold_6498:2534287-2534312 +
  42. scaffold_6500:6364056-6364081 +
  43. scaffold_6500:30349099-30349124 +
  44. scaffold_6500:30855847-30855872 +
  45. scaffold_6500:31130361-31130386 +
  46. scaffold_6500:31419745-31419770 +
  47. scaffold_6540:645458-645483 +
  48. scaffold_6540:1207603-1207628 +
  49. scaffold_6540:4388685-4388710 +
  50. scaffold_6541:1740203-1740228 +
  51. scaffold_6680:23550917-23550942 +
  52. scaffold_4053:2566-2591 +
  53. scaffold_6482:100785-100810 +
  54. scaffold_6498:1273763-1273788 +
  55. scaffold_6498:2559709-2559734 +
  56. scaffold_6500:27154010-27154035 +
  57. scaffold_6500:29781438-29781463 +
  58. scaffold_6541:2041510-2041535 +
  59. scaffold_6654:174861-174886 +
star
  1. scaffold_6460:127920-127941 +
  2. scaffold_6468:113173-113194 +
  3. scaffold_6473:16106640-16106661 +
  4. scaffold_6473:16871486-16871507 +
  5. scaffold_6482:370541-370562 +
  6. scaffold_6496:25918386-25918407 +
  7. scaffold_6496:26360020-26360041 +
  8. scaffold_6496:26360361-26360382 +
  9. dmo_1347  scaffold_6498:1273059-1273080 +
  10. scaffold_6498:1372050-1372071 +
  11. scaffold_6500:20553936-20553957 +
  12. scaffold_6500:25811237-25811258 +
  13. scaffold_6500:29690113-29690134 +
  14. scaffold_6540:1381430-1381451 +
  15. scaffold_6541:1066862-1066883 +
  16. scaffold_6541:1709896-1709917 +
  17. scaffold_6541:2041552-2041573 +
  18. scaffold_6680:23608195-23608216 +
  19. scaffold_6680:23820589-23820610 +
  20. scaffold_6680:24026771-24026792 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCTAAAGGGCGCTATACTAACAACAATGCTTGCAACCAGGAACTTCTCTAGTAAGTAGATATATGGTGATCCAATGCGTGCCAATGCGTGTTTATGTGTGCGTGTGTGTGTGTGCATGTGCGAATAATTATTGAAATATCAGTTGCTCGAAGGGTTCAGGGAATCTCGTAGTCGGGCAGTCTCGACTAGAGCTTTCTTACTTGTTTGTTGAATAATTTCTTTTGTAAATGGACTATCTTCATGAAACTTTA
***********************************************************************************************************************************.((....((((((((((((.((((((...)))))).....)))))))......))).))...))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V049
head
 V056
head
 V041
embryo
.....................................................................................................................................................................................TCGACTAGAGCTTTCTTACTTGT............................................... 23 0 20 3.40 68 68 0 0 0 0 0
...................................................................................................................................TGAAATATCAGTTGCTCGAAGGGTTC.............................................................................................. 26 0 20 1.25 25 25 0 0 0 0 0
........................................................................................................................................................................................................TTGTTTGTTGAATGATTTCTTTTGTA......................... 26 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................CTCGACTAGAGCTTTCTTACTTGTTTG............................................ 27 0 20 0.30 6 6 0 0 0 0 0
...................................................................................................................................TGAAATATCAGTTGCTCGAAGGG................................................................................................. 23 0 20 0.20 4 0 4 0 0 0 0
..........................................................................................................................................TCAGTTGCTCGAAGGGTTCAGG........................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................................................................GGGCAGTCTCGACTAGAGCTTT........................................................ 22 0 20 0.10 2 0 2 0 0 0 0
......................................................................................................................................AATATCAGTTGCTCGAAGGGTTCAGG........................................................................................... 26 0 20 0.10 2 0 2 0 0 0 0
.......................................................................................................................................ATATCAGTTGCTCGAAGGGTTCAGGG.......................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
...................................................................................................................................................................................TCTCGACTAGAGCTTTCTTACTT................................................. 23 0 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................GAAATATCAGTTGCTCGAAGGGTT............................................................................................... 24 0 20 0.05 1 0 0 1 0 0 0
...............................................................................................GTGTGCGTGTGTGTGTGTGC........................................................................................................................................ 20 0 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................GAAATATCAGTTGCTCGAAGGGTTCAGG........................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................GTGTGTGTGCATGTGCGAATAATTA......................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0
............................................................................................................................................................................CGGGCAGTCTCGACTAGAGCT.......................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................GGGCAGTCTCGACTAGAGC........................................................... 19 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................ATATCAGTTGCTCGAAGGGTT............................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................TATTGAAATATCAGTTGCTCGAAGG.................................................................................................. 25 0 20 0.05 1 0 0 1 0 0 0
.....................................................................................................................................................................TCGTAGTCGGGCAGTCTCGACTA............................................................... 23 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TAAATGCACTATCTACACGA....... 20 3 20 0.05 1 0 0 1 0 0 0
..........................................................................................................TGTGTGTGCATGTGCGAATAATT.......................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................CGTAGTCGGGCAGTCTCGACT................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................ATCAGTTGCTCGAAGGGTTCA............................................................................................. 21 0 20 0.05 1 0 0 0 1 0 0
..............................................................................................................................................................................GGCAGTCTCGACTAGAGCT.......................................................... 19 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................TCGACTAGAGCTTTCTTACTTGTTTG............................................ 26 0 20 0.05 1 0 0 0 0 1 0
.....................................................................................................................................................................................TCGACTAGAGCTTTCTTACTTGTTTGT........................................... 27 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................TTCTTAGTTGTTTGGTGA........................................ 18 2 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................................ATATCAGTTGCTCGAAGGGTTCA............................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................GTGCATGTGCGAATAATTATTG...................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1
..................................................................................................................................................................ATCTCGTAGTCGGGCAGTCTC.................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................TCAGTTGCTCGAGGGGTTCGGG........................................................................................... 22 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CGATTTCCCGCGATATGATTGTTGTTACGAACGTTGGTCCTTGAAGAGATCATTCATCTATATACCACTAGGTTACGCACGGTTACGCACAAATACACACGCACACACACACACGTACACGCTTATTAATAACTTTATAGTCAACGAGCTTCCCAAGTCCCTTAGAGCATCAGCCCGTCAGAGCTGATCTCGAAAGAATGAACAAACAACTTATTAAAGAAAACATTTACCTGATAGAAGTACTTTGAAAT
********************************************************.((....((((((((((((.((((((...)))))).....)))))))......))).))...))*********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
.................................................................................................................................................................TTAGGGCATCAGCCCGTCAGAGCTGATCT............................................................. 29 1 5 0.20 1 1 0 0
.................................................................................................................................................................TCAGAGCATCAGCCCGTCAGAGCTGATCT............................................................. 29 1 7 0.14 1 1 0 0
........................................................................................................................................ATAGTCAACGAGCTTCCCAAGTCCCT......................................................................................... 26 0 9 0.11 1 1 0 0
......................................................................................................................................TTATAGTCAACGAGCTTCCCAAGT............................................................................................. 24 0 20 0.10 2 2 0 0
....................................................................................................................ACACGCTTATTAATAACTTTATAGTCAAC.......................................................................................................... 29 0 20 0.10 2 2 0 0
........................................................................................................................................................CCAAGTCCCTTAGAGCATCAGC............................................................................. 22 0 20 0.10 2 2 0 0
................................................................................................ACACGCACACACACACACGTACAC................................................................................................................................... 24 0 11 0.09 1 0 1 0
.................................................................................................................................................................................................................................ATTACCTGATAGAAGTACTT...... 20 1 12 0.08 1 1 0 0
..............................................................................................................................................AACGAGCTTCCCAAGTCCCTT........................................................................................ 21 0 17 0.06 1 1 0 0
................................................................................GGTTACGCACAAATACAC......................................................................................................................................................... 18 0 18 0.06 1 1 0 0
...............................................................................................................CACGTACACGCTTATTAATAACTTTATAG............................................................................................................... 29 0 20 0.05 1 1 0 0
....................................................................................................................................................................GAGCATCAGCCCGTCAGATCTGATCT............................................................. 26 1 20 0.05 1 1 0 0
....................................................................................................................................................................GTGCATCAGCCCGTCAGAGCTGATCT............................................................. 26 1 20 0.05 1 0 1 0
...........................................................................................................................TATTAATAACTTTATAGTCAACGAGCT..................................................................................................... 27 0 20 0.05 1 0 1 0
..................................................................................................................GTACACGCTTATTAATAACTTTATAGT.............................................................................................................. 27 0 20 0.05 1 1 0 0
...................................................................................................................................................................AGAGCATCAGCCCGTCAGATCTGATCT............................................................. 27 1 20 0.05 1 1 0 0
....................................................................................................................................CTTTATAGTCAACGAGCTTCCCAAGT............................................................................................. 26 0 20 0.05 1 0 1 0
.........................................................................................................................................................................TCAGCCCGTCAGAGCTGATCTC............................................................ 22 0 20 0.05 1 1 0 0
..........................................................................................................................TTATTAATAACTTTATAGTCAACGAGCT..................................................................................................... 28 0 20 0.05 1 0 1 0
...................................................................................................................................ACTTTATAGTCAACGAGCTTCCCAAGTC............................................................................................ 28 0 20 0.05 1 0 0 1
....................................................................................................................................................................GAGCATCAGCCCGTCAGAGCT.................................................................. 21 0 20 0.05 1 1 0 0
.................................................................................................................CGTACACGCTTATTAATAACTTTATAGT.............................................................................................................. 28 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:1272886-1273136 + dmo_1347 GCTAAAGGGCG--------------CTATACTAACAACAATGCTTGCAACCAGGAACTTCTCTAGTAAGTAGATATATGGTG------ATCCAATGCGT----G--CC---AATGCGTGTTTATGTG---------------------------------------------------------------TG--------------------------------------CGTG--TGT----------GTGT--GTGCAT--------------GT---------GCG---AATAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAAATATCAG--------TTGCTCGAAG---------GGTTCAGGG------AA------------------------------------------------------------------------------------------------------------------------------TCTCGTAGTCGGGCAG-TCTCGACTAGAGCT-TTCTTACTTGT--------------------------TTGTTGAATAATTT---------C--------TTTTGTAA------------------------------ATGGA-CTA-----TC--------------------------------------------------------------------TTCATGAAA---CTTTA
droVir3 scaffold_13042:2534160-2534348 + AATGC-----------------------------------------------------------------------------A-----------T----TCTTATGTGTGT-----GTATGCGT-----------------------------------------------------------------------------------------------------GTCTGTGTG------------TGT------G--TGT--------------GTGT-AAAAGG-----------C--------------------------------------------------------------------------------------------------------------------------------------AGCTAGAATATATAGAATATA-----------GGCAG--------CTGGGCGCCG---------GGTTTAGGG------TA------------------------------------------------------------------------------------------------------------------------------TCTTCTAGTCGAGCAC-ACTTGACTAGGGCAAATGTTACTTAT----TGTTTTGT------------T---------------------------------TTTTGGCG------------------------------ATAAA-CCAAAACTTG--------------------------------------------------------------------TGCGCGCAA---TTTCA
droGri2 scaffold_15203:8493233-8493403 + GTGGATAACTTATT-------------------------------------------------------------------------------------------GTGCTT-----AAATGCGT-------------GCAGTGAGTTTGTAGTGTAATGATTCCATACCCTGCCAATTAAACTATAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCTG--------TTAAATGCTG---------GGTTTAGGG------TA------------------------------------------------------------------------------------------------------------------------------TCTTGTAGTCGAGCTC-ACTCGACTATGGCA-TTCTTACTTGT--------------------------T-------------------------------------------------------AT-AAATAATTTAT---------------------------------------------TC---------------------------------------------A---GTTAA
droWil2 scf2_1100000004762:4896183-4896384 - AACAGCAAATGCACG-------------------------------TATACAGATACCTATTTGATTTGCATATATGTAG--G-----------T------ACATATACAT-----ATATGCAT-----------------------------------------------------------------------------------------------------GTATGTATG------------TAT------G--TAT--------------GTAT-GGAGGG-----------G--------------------------------------------------------------------------------------------------------------------------------------C-----------------------GATGAAA------------------------------------------------------------TGCAATTTCATCAAATCAATTAA--------------------------------------------------------------AGGCCTT--------------------------------------------------------TTCCCTTTTGCTAGCG-------AATATTGGAAAC-----------ATTTT-TTA-------------------------TGTGAAATATGTA-------TAT--------------------GTATGTAT---------------------GC---------------------------------------------A---TCCAG
dp5 4_group4:5985841-5985963 - ATGCAT---------------------------------------------------------------------------------------ATGTAA----A--TT---CGCGTGCGTGTGTGTGTGCG---------------------------------------------------------------------------------------------------------TGA----------GAGT--GTCAGT--------------GT---------GCG---TGTAGTT----------------------------------------------------------------------------------------------GTATGTCT-------------------------------------------------------------------G--------CTATTCGTAGGCAGCAAAAAGTATCGGGTAGCA----------CA-------------------------------------------------------------------------------ATCGAG---------------------------------------------A----------------------------------------------------------------------------------------------------------------------AACTTTC------------------------------------------------------------------------------------------------TTATT
droPer2 scaffold_10496:191-335 + ATGCGC---------------------------------------------------------------------------------------GC------GCGCGTTCAT---GTGT--G-------------------------------------------------------------------------------------------------------------TGTG------------TGT------G--TTA--------------GTGC-CGCA-------------------------------------------------------------------------------------------------------------------------------------------------GCGCATTAGAAAAAAT----------------------------------------------------------------------------------------------------------------------------------CAAATGAAAAATTGAGACAAGAGATGAGAGCA--------------------------------GCCCGCAACCGAAGTC-CCCC-CCAAAAGAA-TTGTTTTT-------------------------------------------------------------------------------------TC-CATTAATTTTT------------------------------------------------------------------------------------------------TCTGT
droAna3 scaffold_13117:5251525-5251672 + GATCGA---------------------------------------------------------------------------------------ATCGGA----G--CC---AATACGTATTAATATGTAGGTATAT-ATG-----------------------------------------------------------------------------GTGGGTATG----------TCT----ATTT--------ATAT----------------------------------------------------------------------------------------------------------------------------------------ATGTGC-------------------------------------------------------------------C--------TTATCAGGTA--------------------ACA----------CATGTAATTA------------------------------------------------------------------------TTGAA--------------------------------------------AA-CCGCTGGATTGTCTGA-TT-----TT--------------------------T-T-------------------------------------------------------CT-GACCGATTTTT-------------------------------TTGATCG------------------------------------------------------G---ATTGG
droBip1 scf7180000394980:16461-16605 - CGATGT----------------------------------------------------------------------------ATT---------------TTTATATT----------------------------------------------------------------------------------TG-----------------CGACACTTTTT----------------TTT----------GATTTTG--TCT--------------GTT---------TGAA-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAA--------TTTTTCTCAA---------AGTTCAAGG------TATGTTGT---------------AAACGAAATTAA------------------------------------------------------------------------------------------------------------------------AGAT-TTGTGACCTGT--------------------------GAGTAGA-----------------CGTTGCAT------------------------TC-ATAAATTATGT---------------------------------------------TT---------------------------------------------A---AAACC
droKik1 scf7180000299187:1034-1224 + AGTAT-----------------------------------------------------------------------------G-----------T----ACATATGTATGT-----ATGTATGTATGTA-----------------------------------------------------------------------------------------------------TG----TAT----------GTA------TGT--------------AT---------------GTATGT---------------------------------------------------------------------------------ATGTATGTATGTATGTATGTACGCTTTTT---A-----------------ACACCTT------------------------------------------------------------------------------------------------A----------------------------ACGAAATTAT----TTAATCCCCACTCACGTTTTAAGTAGACACCG--------------------------------------------ACAC-GCTCCAT--------CTTGATTTC--------------------------C-T-------------------------------------------------------TT-AATAAGTTCCT---------------------------------------------TTATTGTTTGC----------------------------TGCGTCAAT---CTCCA
droFic1 scf7180000454073:790556-790651 + AACTGC----------------------------------------------------------------------------AGTGCTTACAAA----------------T---GCAA---------------------------------------------------------ATTGAAACATGATAA--TTGGTCTCACCTGTGTGCGCCACTCGCGTGTGTG----------TGT----------GTGT--GTCTGT--------------GT---------GCG---AAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491017:441872-442021 + TGTCT-----------------------------------------------------------------------------A-----------T----GTATGTGTGTGT-----GTGTGTA---------------------------------------------------------------------------------------------------------------------------TGT------G--TGT--------------GT---TGCAGA--------TAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------T----TT------------------------------------------------------------TGAACCTTTG----------------------------ACAAACTGCTGCAG---------------------------------CGAACTTTTGCCATTCGTTT-------GGAA-------------------------------------------------------AATTTTAATAAT-----------CTTTTATCG-------------------------AGCGGGCTGGATT-------TAC--------------------ATCAACCT---------------------CT---------------------------------------------A---CTTTC
droRho1 scf7180000773180:4070-4278 - ACAGGTGGCT------------------------------------------------------------------------------AACCGA-------------------TGGGAAAAAATGGGAAACTGTGTG-----------------------------------------------------TG--------------------------------------CGTGGGTGTGTGTGTTTGT------G--TGT--------------GTGG-AGGCAG-----------C----CAGTGGCTAGTT-------------------------------------------------------------------------------ATTTGATT-------------------------------------------------------------------G--------GT--------------------------------------------------------------------ATTATAGGCGCTCGTTAAGAGCTCTCCA---------------------------------CAAGATACTACTAAATGCCACGCACTCCAAG-------------------------------------------------------GGAATTATGAGT-----------GGTTTGTGGAGAGC-CGT----T------------------------TC-AAGTAGTTTCT---------------------------------------------TC---------------------------------------------A---CATTT
droBia1 scf7180000302140:58775-58921 + CATGC-----------------------------------------------------------------------------T-----------C----ATGTGTGCGATT---GTCC--GTT-------------------------------------------------------------------------------------------------------------TG------------CTT------G--TCC--------------GCC-C--------AACTGTCCGT---------------------------------------------------------------------------------CTGTG----T-------------------A----------------------------------------------------------------------------AA---------GGCTAGAAA-----GTTGATCAT---------------GCGGACTATTGAAGCTCTGGGACCTCGCAAGATTATTTCTG---------------------------------CAGACCGCTACTGCCTGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGA---CCTTA
droTak1 scf7180000412396:24455-24679 + GTGACG---------------------------------------------------------------------------------------TCACGC----G--TC---CCCATATGTTTGTATGTATG------------------------------------------------------------------------------TTCTGCTGGCGCATGTA----------TGT----ATGT--------ACAT----------------------------------------------------------------------------------------------------------------------------------------ATGTATGTCCTGCTGTGGCAATTTAAGTGTGACCGCGCA---------------AAGGGAAAATAA-------------------------------------------A------AA------------------------------------------------------------------------------------------------------------------------------TACCACAGCCAAAAAA-AATCGATTATATCG-CAATCTTTT--------------------------CTT-----------------------------------------------------------TTGCGCCTTT---------------------------------------------TTCTTAAATAATCGTTAAATTTTAAAATATCGGTAGACCTTACAGAAATCCCATTA
droEug1 scf7180000409223:103372-103546 - TGTGT-----------------------------------------------------------------------------G-----------T----GTGTGTGTGTGT-----GTGTGTGTGTGTG-----------------------------------------------------------------------------------------------------TG----TGT----------GTG------TGTGTGT----------GT---------GTG-------------------------------------------------------------------------------------------TGTGTGT------GTGTGTTG-------------------------------------------------------------------T--------TTGTCTGTGGGTTCTATATA----CTCG------TATATCACACATGGAAATG------------------------------------------------------------------------TAAAA--------------------------------------------GG-CTGCTTATATG------------------------------------------------------------------------------TGTGA---------------G-------TGT--------------------GTGTGTGTGTGTTTTTTAAACATATTTATAC---------------------------------------------C---CTTTA
dm3 chr2R:1075896-1075986 - GGGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGTAGTTTGGGCA-ACTCGACTATAGCA-TTCTCTCTTGCTTGTG-------------------------------ATTT---------C--------ATTTGTGATTTAATTTATGGAACC-------AATTTTT------------------------------------------------------------------------------------------------TTTCA
droSim2 4:851922-852135 - dsi_9724 GCTAAAGGGAG--------------CCATTCTTACGACAATGTTGGCTACCAGAAATTTTTCGAGTACGTAACT-TAAATTA-----------------------------------------------------------------------------------------------------------------ATCTT-------------------------------------------------------G--ACG--ACATGAATATATTTGG----CGT-----------C--------------------------------------------------------------------------------------------------------------------------------------AACACAAAAATATACAAAAAG-----------GACA-------------------------------------------------------------------------------------------------------------------------------------ATAGAGA-------------------------------CGCTAAAGTCAA----------------------TTTCCTTGA--------------------------CAATCATAT-----------------------ACCCGTTATTCAGCTTGTGGGATT-------AATATAAATATATTTA-----AT--------------------------------------------------------------------TTCGTATAA---AAATA
droSec2 scaffold_8:2897962-2898068 - CAGAGA----------------------------------------------------------------------------AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAAATTTCGGCTTCGCATTCACTAGCTG---------AGTAACGGG------TA------------------------------------------------------------------------------------------------------------------------------TCTGATAGTCGGGGAA-ACTCGACTATAGCA-TTATCTCTT--------------------------TTTTAGTTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------A---ACTCC
droYak3 X:18033319-18033501 + TGTGT-----------------------------------------------------------------------------G-----------T----ACGTGTATGTAT-----GTGTGTGTGTG-------------------------------------------------------------------------------------------------------------TGT----------GTGT--GTGTGT--------------GT---------GTG---AGTTATTGTTCCGAGACAAGATATTTTACTGCTTTGTTATGAAATTCAACAGGATATATCCAGACCCTGACGTAGATACATATGTACATATTTATATATATGTATGTAC-----------------------------------------------------------------------------------------------------ATATAGCA----------TA-------------------------------------------------------------------------------GTTAAA---------------------------------------------GGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---CTTTA
droEre2 scaffold_4845:2615924-2616121 + ACTGAAAAGTTCTTGAACAAGAAAATAGTTCTTAC-----------------------------------------------------------------------GT----------------------------------------------------------------------------------TGCTAATCTTATTTATATACGC-----GTATGTATGTATATACA------------CAC------A--TAC--------------GCA-C--------AAAAATATAT---------------------------------------------------------------------------------ATATA----T-------------------CGTGGTA---------------AGTA---------------AAGGGAAAA--------------------------------------------------------------CCAGAGCTCA------------------------------------------------------------------------TTAAA--------------------------------------------AA----------------T-CTTAAGCTA--------------------------ATTCAATAAATAATTCCCTGGGTTC-CAA----C------------------------CCGGGATTGTCCTC------------------------------------------------------------------------------------------------TTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCTAAAGGGCG--------------CTATACTAACAACAATGCTTGCAACCAGGAACTTCTCTAGTAAGTAGATATATGGTG------ATCCAATGCGT----G--CC---AATGCGTGTTTATGTG---------------------------------------------------------------TG--------------------------------------CGTG--TGT----------GTGT--GTGCAT--------------GT---------GCG---AATAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAAATATCAG--------TTGCTCGAAG---------GGTTCAGGG------AA------------------------------------------------------------------------------------------------------------------------------TCTCGTAGTCGGGCAG-TCTCGACTAGAGCT-TTCTTACTTGT--------------------------TTGTTGAATAATTT---------C--------TTTTGTAA------------------------------ATGGA-CTA-----TC--------------------------------------------------------------------TTCATGAAA---CTTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTAGAGCT-TTCTTACTTGT--------------------------...........................................................................................................................................................................23203.40686800000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATATCAG--------TTGCTCGAAG---------GGTTC..........................................................................................................................................................................................................................................................................................................................................................................................26201.25252500000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTAGAGCT-TTCTTACTTGT--------------------------TTG........................................................................................................................................................................27200.306600000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATATCAG--------TTGCTCGAAG---------GG.............................................................................................................................................................................................................................................................................................................................................................................................23200.204000040
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAG--------TTGCTCGAAG---------GGTTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................22200.102200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAG-TCTCGACTAGAGCT-TT..............................................................................................................................................................................................................22200.102000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCAG--------TTGCTCGAAG---------GGTTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................26200.102000020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAG--------TTGCTCGAAG---------GGTTCAGGG------................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGACTAGAGCT-TTCTTACTT.......................................................................................................................................................................................................23200.102200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATATCAG--------TTGCTCGAAG---------GGTT...........................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
............................................................................................................................GTG---------------------------------------------------------------TG--------------------------------------CGTG--TGT----------GTGT--GTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATATCAG--------TTGCTCGAAG---------GGTTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
.............................................................................................................................................................................................................................................GT----------GTGT--GTGCAT--------------GT---------GCG---AATAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCAG-TCTCGACTAGAGCT-................................................................................................................................................................................................................21200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAG-TCTCGACTAGAGC..................................................................................................................................................................................................................19200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAG--------TTGCTCGAAG---------GGTT...........................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..........................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAAATATCAG--------TTGCTCGAAG---------G..............................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAGTCGGGCAG-TCTCGACTA......................................................................................................................................................................................................................23200.051100000
..............................................................................................................................................................................................................................................T----------GTGT--GTGCAT--------------GT---------GCG---AATAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGTCGGGCAG-TCTCGACT.......................................................................................................................................................................................................................21200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAG--------TTGCTCGAAG---------GGTTCA.........................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAG-TCTCGACTAGAGCT-................................................................................................................................................................................................................19200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTAGAGCT-TTCTTACTTGT--------------------------TTG........................................................................................................................................................................26200.051000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTAGAGCT-TTCTTACTTGT--------------------------TTGT.......................................................................................................................................................................27200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAG--------TTGCTCGAAG---------GGTTCA.........................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
...............................................................................................................................................................................................................................................................GTGCAT--------------GT---------GCG---AATAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------ATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------------------------------TCTCGTAGTCGGGCAG-TCTC...........................................................................................................................................................................................................................21200.051100000
droVir3
AATGC-----------------------------------------------------------------------------A-----------T----TCTTATGTGTGT-----GTATGCGT-----------------------------------------------------------------------------------------------------GTCTGTGTG------------TGT------G--TGT--------------GTGT-AAAAGG-----------C--------------------------------------------------------------------------------------------------------------------------------------AGCTAGAATATATAGAATATA-----------GGCAG--------CTGGGCGCCG---------GGTTTAGGG------TA------------------------------------------------------------------------------------------------------------------------------TCTTCTAGTCGAGCAC-ACTTGACTAGGGCAAATGTTACTTAT----TGTTTTGT------------T---------------------------------TTTTGGCG------------------------------ATAAA-CCAAAACTTG--------------------------------------------------------------------TGCGCGCAA---TTTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................TATGTGTGT-----GTATGCGT-----------------------------------------------------------------------------------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.111000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................CGT-----------------------------------------------------------------------------------------------------GTCTGTGTG------------TGT------G--TG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000100000000000000000000000000000000000000
droGri2
GTGGATAACTTATT-------------------------------------------------------------------------------------------GTGCTT-----AAATGCGT-------------GCAGTGAGTTTGTAGTGTAATGATTCCATACCCTGCCAATTAAACTATAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCTG--------TTAAATGCTG---------GGTTTAGGG------TA------------------------------------------------------------------------------------------------------------------------------TCTTGTAGTCGAGCTC-ACTCGACTATGGCA-TTCTTACTTGT--------------------------T-------------------------------------------------------AT-AAATAATTTAT---------------------------------------------TC---------------------------------------------A---GTTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AACAGCAAATGCACG-------------------------------TATACAGATACCTATTTGATTTGCATATATGTAG--G-----------T------ACATATACAT-----ATATGCAT-----------------------------------------------------------------------------------------------------GTATGTATG------------TAT------G--TAT--------------GTAT-GGAGGG-----------G--------------------------------------------------------------------------------------------------------------------------------------C-----------------------GATGAAA------------------------------------------------------------TGCAATTTCATCAAATCAATTAA--------------------------------------------------------------AGGCCTT--------------------------------------------------------TTCCCTTTTGCTAGCG-------AATATTGGAAAC-----------ATTTT-TTA-------------------------TGTGAAATATGTA-------TAT--------------------GTATGTAT---------------------GC---------------------------------------------A---TCCAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
ATGCAT---------------------------------------------------------------------------------------ATGTAA----A--TT---CGCGTGCGTGTGTGTGTGCG---------------------------------------------------------------------------------------------------------TGA----------GAGT--GTCAGT--------------GT---------GCG---TGTAGTT----------------------------------------------------------------------------------------------GTATGTCT-------------------------------------------------------------------G--------CTATTCGTAGGCAGCAAAAAGTATCGGGTAGCA----------CA-------------------------------------------------------------------------------ATCGAG---------------------------------------------A----------------------------------------------------------------------------------------------------------------------AACTTTC------------------------------------------------------------------------------------------------TTATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGCAGCAAAAAGTATCGG.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................GTAA----A--TT---CGCGTGCGTGTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
ATGCGC---------------------------------------------------------------------------------------GC------GCGCGTTCAT---GTGT--G-------------------------------------------------------------------------------------------------------------TGTG------------TGT------G--TTA--------------GTGC-CGCA-------------------------------------------------------------------------------------------------------------------------------------------------GCGCATTAGAAAAAAT----------------------------------------------------------------------------------------------------------------------------------CAAATGAAAAATTGAGACAAGAGATGAGAGCA--------------------------------GCCCGCAACCGAAGTC-CCCC-CCAAAAGAA-TTGTTTTT-------------------------------------------------------------------------------------TC-CATTAATTTTT------------------------------------------------------------------------------------------------TCTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GATCGA---------------------------------------------------------------------------------------ATCGGA----G--CC---AATACGTATTAATATGTAGGTATAT-ATG-----------------------------------------------------------------------------GTGGGTATG----------TCT----ATTT--------ATAT----------------------------------------------------------------------------------------------------------------------------------------ATGTGC-------------------------------------------------------------------C--------TTATCAGGTA--------------------ACA----------CATGTAATTA------------------------------------------------------------------------TTGAA--------------------------------------------AA-CCGCTGGATTGTCTGA-TT-----TT--------------------------T-T-------------------------------------------------------CT-GACCGATTTTT-------------------------------TTGATCG------------------------------------------------------G---ATTGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CGATGT----------------------------------------------------------------------------ATT---------------TTTATATT----------------------------------------------------------------------------------TG-----------------CGACACTTTTT----------------TTT----------GATTTTG--TCT--------------GTT---------TGAA-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAA--------TTTTTCTCAA---------AGTTCAAGG------TATGTTGT---------------AAACGAAATTAA------------------------------------------------------------------------------------------------------------------------AGAT-TTGTGACCTGT--------------------------GAGTAGA-----------------CGTTGCAT------------------------TC-ATAAATTATGT---------------------------------------------TT---------------------------------------------A---AAACCSizeHit CountTotal NormTotal
No Reads
droKik1
AGTAT-----------------------------------------------------------------------------G-----------T----ACATATGTATGT-----ATGTATGTATGTA-----------------------------------------------------------------------------------------------------TG----TAT----------GTA------TGT--------------AT---------------GTATGT---------------------------------------------------------------------------------ATGTATGTATGTATGTATGTACGCTTTTT---A-----------------ACACCTT------------------------------------------------------------------------------------------------A----------------------------ACGAAATTAT----TTAATCCCCACTCACGTTTTAAGTAGACACCG--------------------------------------------ACAC-GCTCCAT--------CTTGATTTC--------------------------C-T-------------------------------------------------------TT-AATAAGTTCCT---------------------------------------------TTATTGTTTGC----------------------------TGCGTCAAT---CTCCASizeHit CountTotal NormTotal
No Reads
droFic1
AACTGC----------------------------------------------------------------------------AGTGCTTACAAA----------------T---GCAA---------------------------------------------------------ATTGAAACATGATAA--TTGGTCTCACCTGTGTGCGCCACTCGCGTGTGTG----------TGT----------GTGT--GTCTGT--------------GT---------GCG---AAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGTCT-----------------------------------------------------------------------------A-----------T----GTATGTGTGTGT-----GTGTGTA---------------------------------------------------------------------------------------------------------------------------TGT------G--TGT--------------GT---TGCAGA--------TAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------T----TT------------------------------------------------------------TGAACCTTTG----------------------------ACAAACTGCTGCAG---------------------------------CGAACTTTTGCCATTCGTTT-------GGAA-------------------------------------------------------AATTTTAATAAT-----------CTTTTATCG-------------------------AGCGGGCTGGATT-------TAC--------------------ATCAACCT---------------------CT---------------------------------------------A---CTTTCSizeHit CountTotal NormTotal
No Reads
droRho1
ACAGGTGGCT------------------------------------------------------------------------------AACCGA-------------------TGGGAAAAAATGGGAAACTGTGTG-----------------------------------------------------TG--------------------------------------CGTGGGTGTGTGTGTTTGT------G--TGT--------------GTGG-AGGCAG-----------C----CAGTGGCTAGTT-------------------------------------------------------------------------------ATTTGATT-------------------------------------------------------------------G--------GT--------------------------------------------------------------------ATTATAGGCGCTCGTTAAGAGCTCTCCA---------------------------------CAAGATACTACTAAATGCCACGCACTCCAAG-------------------------------------------------------GGAATTATGAGT-----------GGTTTGTGGAGAGC-CGT----T------------------------TC-AAGTAGTTTCT---------------------------------------------TC---------------------------------------------A---CATTTSizeHit CountTotal NormTotal
No Reads
droBia1
CATGC-----------------------------------------------------------------------------T-----------C----ATGTGTGCGATT---GTCC--GTT-------------------------------------------------------------------------------------------------------------TG------------CTT------G--TCC--------------GCC-C--------AACTGTCCGT---------------------------------------------------------------------------------CTGTG----T-------------------A----------------------------------------------------------------------------AA---------GGCTAGAAA-----GTTGATCAT---------------GCGGACTATTGAAGCTCTGGGACCTCGCAAGATTATTTCTG---------------------------------CAGACCGCTACTGCCTGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGA---CCTTASizeHit CountTotal NormTotal
No Reads
droTak1
GTGACG---------------------------------------------------------------------------------------TCACGC----G--TC---CCCATATGTTTGTATGTATG------------------------------------------------------------------------------TTCTGCTGGCGCATGTA----------TGT----ATGT--------ACAT----------------------------------------------------------------------------------------------------------------------------------------ATGTATGTCCTGCTGTGGCAATTTAAGTGTGACCGCGCA---------------AAGGGAAAATAA-------------------------------------------A------AA------------------------------------------------------------------------------------------------------------------------------TACCACAGCCAAAAAA-AATCGATTATATCG-CAATCTTTT--------------------------CTT-----------------------------------------------------------TTGCGCCTTT---------------------------------------------TTCTTAAATAATCGTTAAATTTTAAAATATCGGTAGACCTTACAGAAATCCCATTASizeHit CountTotal NormTotal
No Reads
droEug1
TGTGT-----------------------------------------------------------------------------G-----------T----GTGTGTGTGTGT-----GTGTGTGTGTGTG-----------------------------------------------------------------------------------------------------TG----TGT----------GTG------TGTGTGT----------GT---------GTG-------------------------------------------------------------------------------------------TGTGTGT------GTGTGTTG-------------------------------------------------------------------T--------TTGTCTGTGGGTTCTATATA----CTCG------TATATCACACATGGAAATG------------------------------------------------------------------------TAAAA--------------------------------------------GG-CTGCTTATATG------------------------------------------------------------------------------TGTGA---------------G-------TGT--------------------GTGTGTGTGTGTTTTTTAAACATATTTATAC---------------------------------------------C---CTTTASizeHit CountTotal NormTotal
No Reads
dm3
GGGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGTAGTTTGGGCA-ACTCGACTATAGCA-TTCTCTCTTGCTTGTG-------------------------------ATTT---------C--------ATTTGTGATTTAATTTATGGAACC-------AATTTTT------------------------------------------------------------------------------------------------TTTCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTATAGCA-TTCTCTCTTGC.....................................................................................................................................................................................................23412.505000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000050000000000000000061442500000000000000020001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTATAGCA-TTCTCTCTTGCTT...................................................................................................................................................................................................25410.504200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000060002000000000000000060100230000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACTCGACTATAGCA-TTCTCTCTTGC.....................................................................................................................................................................................................26410.50420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000007008500000000000000020404550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTATAGCA-TTCTCTCTTGCT....................................................................................................................................................................................................2449.003600000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000024621100000000000000040002030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGACTATAGCA-TTCTCTCTTGC.....................................................................................................................................................................................................2548.25330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000030500000000000000020406360000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGACTATAGCA-TTCTCTCTTGCTT...................................................................................................................................................................................................2746.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400800030000000000020103110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTATAGCA-TTCTCTCTTGCT....................................................................................................................................................................................................2545.25210000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001030200000000000000030003430000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTATAGCA-TTCTCTCTTGC.....................................................................................................................................................................................................2444.25170000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011300000000000000010204210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTATAGCA-TTCTCTCTTGCTT...................................................................................................................................................................................................2643.25130000000000000000000000000000000000000000000000001010000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010102221000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGACTATAGCA-TTCTCTCTTGCT....................................................................................................................................................................................................2643.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000004000100000000000000020002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACTCGACTATAGCA-TTCTCTCTTGCT....................................................................................................................................................................................................2742.2590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000030200020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCA-ACTCGACTATAGCA-T...............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTG-------------------------------ATTT---------C--------ATTTGTGATT.................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTATAGCA-TTCTCTCT........................................................................................................................................................................................................21200.901800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTATAGCA-TTCTCT..........................................................................................................................................................................................................18200.551100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCA-ACTCGACTATAGCA-TG..............................................................................................................................................................................................................2140.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCA-ACTCGACTATAGCA-TT..............................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACTCGACTATAGCA-TTCTCTCTTG......................................................................................................................................................................................................25200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACTCGACTATAGCA-TTCTCTCTTGCTT...................................................................................................................................................................................................2840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTATAGCA-TTCTCTCTTGCTT...................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACTCGACTATAGCA-TTCTC...........................................................................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGCA-TTCTCTCTTGCTT...................................................................................................................................................................................................2350.2010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGCA-TTCTCTCTTGC.....................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-ACTCGACTATAGCA-TTC.............................................................................................................................................................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGACTATAGCA-TTCTCTCTTG......................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACTCGACTATAGCA-TTCTCTC.........................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGACTATAGCA-TTCTC...........................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGACTATAGCA-TTCT............................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACTCGACTATAGCA-TTCTCTCT........................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCTAAAGGGAG--------------CCATTCTTACGACAATGTTGGCTACCAGAAATTTTTCGAGTACGTAACT-TAAATTA-----------------------------------------------------------------------------------------------------------------ATCTT-------------------------------------------------------G--ACG--ACATGAATATATTTGG----CGT-----------C--------------------------------------------------------------------------------------------------------------------------------------AACACAAAAATATACAAAAAG-----------GACA-------------------------------------------------------------------------------------------------------------------------------------ATAGAGA-------------------------------CGCTAAAGTCAA----------------------TTTCCTTGA--------------------------CAATCATAT-----------------------ACCCGTTATTCAGCTTGTGGGATT-------AATATAAATATATTTA-----AT--------------------------------------------------------------------TTCGTATAA---AAATASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................TTCTTACGACAATGTTGGCTACCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
................................TACGACAATGTTGGCTACCAGAAATTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
................................TACGACAATGTTGGCTACCAGAAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
........................................TGTTGGCTACCAGAAATTTTTCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.............................TCTTACGACAATGTTGGCTACCAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
............................TTCTTACGACAATGTTGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
..........................CATTCTTACGACAATGTTGGCTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
..........................CATTCTTACGACAATGTTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.............................TCTTACGACAATGTTGGCTACCAGAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG-----------GACA-------------------------------------------------------------------------------------------------------------------------------------ATAGAGA-------------------------------CGCTAA..........................................................................................................................................................................................................................................2211.00100000000000001000
...............................TTACGACAATGTTGGCTACCAGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
droSec2
CAGAGA----------------------------------------------------------------------------AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAAATTTCGGCTTCGCATTCACTAGCTG---------AGTAACGGG------TA------------------------------------------------------------------------------------------------------------------------------TCTGATAGTCGGGGAA-ACTCGACTATAGCA-TTATCTCTT--------------------------TTTTAGTTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------A---ACTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.AGAGA----------------------------------------------------------------------------AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAAATTT.............................................................................................................................................................................................................................................................................................................................................................................................................................1870.1410010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACTCGACTATAGCA-TTATCT..........................................................................................................................................................................................................21200.0511000
droYak3
TGTGT-----------------------------------------------------------------------------G-----------T----ACGTGTATGTAT-----GTGTGTGTGTG-------------------------------------------------------------------------------------------------------------TGT----------GTGT--GTGTGT--------------GT---------GTG---AGTTATTGTTCCGAGACAAGATATTTTACTGCTTTGTTATGAAATTCAACAGGATATATCCAGACCCTGACGTAGATACATATGTACATATTTATATATATGTATGTAC-----------------------------------------------------------------------------------------------------ATATAGCA----------TA-------------------------------------------------------------------------------GTTAAA---------------------------------------------GGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---CTTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ACTGAAAAGTTCTTGAACAAGAAAATAGTTCTTAC-----------------------------------------------------------------------GT----------------------------------------------------------------------------------TGCTAATCTTATTTATATACGC-----GTATGTATGTATATACA------------CAC------A--TAC--------------GCA-C--------AAAAATATAT---------------------------------------------------------------------------------ATATA----T-------------------CGTGGTA---------------AGTA---------------AAGGGAAAA--------------------------------------------------------------CCAGAGCTCA------------------------------------------------------------------------TTAAA--------------------------------------------AA----------------T-CTTAAGCTA--------------------------ATTCAATAAATAATTCCCTGGGTTC-CAA----C------------------------CCGGGATTGTCCTC------------------------------------------------------------------------------------------------TTGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:17 AM