ID:

dmo_1341

 Coordinate:

scaffold_6498:1158592-1158742 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.2 -17.1 -17.1

Flybase annnotation

CDS [Dmoj\GI14095-cds]; exon [dmoj_GLEANR_14175:10]; intron [Dmoj\GI14095-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
mature
  1. scaffold_6271:42186-42209 -
  2. scaffold_6341:122995-123018 +
  3. scaffold_6342:13393-13416 +
  4. scaffold_6473:14061361-14061384 +
  5. scaffold_6482:2512957-2512980 +
  6. dmo_1341  scaffold_6498:1158647-1158670 +
  7. scaffold_6498:1188808-1188831 -
  8. scaffold_6500:30022192-30022215 +
  9. scaffold_6540:733629-733652 -
  10. scaffold_6540:1243403-1243426 -
  11. scaffold_6541:2185877-2185900 +
  12. scaffold_6541:2203248-2203271 +
  13. scaffold_6680:22941829-22941852 -
  14. scaffold_6680:23736392-23736415 -
star
  1. scaffold_1816:1832-1857 +
  2. scaffold_2589:3885-3910 +
  3. scaffold_2777:210-235 +
  4. scaffold_4023:1118-1143 +
  5. scaffold_4536:12604-12629 +
  6. scaffold_4993:1188-1213 +
  7. scaffold_5385:451-476 +
  8. scaffold_5812:5652-5677 +
  9. dmo_1341  scaffold_6498:1158717-1158742 +
  10. scaffold_6498:1615913-1615938 +
  11. scaffold_6498:3165480-3165505 +
  12. scaffold_6500:6467341-6467366 +
  13. scaffold_6500:11799985-11800010 +
  14. scaffold_6500:23750366-23750391 +
  15. scaffold_6500:30766805-30766830 +
  16. scaffold_6540:654535-654560 +
  17. scaffold_6540:1048744-1048769 +
  18. scaffold_6540:4385358-4385383 +
  19. scaffold_6541:1722849-1722874 +
  20. scaffold_6680:23823933-23823958 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTGGTTTATCGCGTGAAATCGAAAATGCTAGCGATGCCTATACCACTCGGGTAAGTGCTTATACCCGACTCGTCGTGGCTTTTTATACCTTGAACCCATTGAAAATGGGAAATCAGGGAATAATGGTTTTGTCAAATGTATGTAACAAGCAGAAGGAGGCGTGGCGTGGTATATATATTCTTGATCAGGGCGACGAGCTGAGTCGATTTAGCTCTATCCGTCTGTGCGTCCGTCCGTCTGTCCGCATATTT
*********************************************************************************************************.......((((.........(((((((((((((((((((.((.((.............)).)).)))))))))..)))).))))))......))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
 V110
male body		 M060
embryo
................................GATGCCTATACCACTCGGGGAGGT................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0
.........................................................................................................TGGGAAATCAGGGAATAATAGTTTTGTC...................................................................................................................... 28 1 2 0.50 1 0 0 1 0
.................................................................................................................................................CAAGCAGATGGAGGCGTGGCG..................................................................................... 21 1 2 0.50 1 0 1 0 0
.........................................................................................................TGGGAAATCAGGGAATAATGGTTT.......................................................................................................................... 24 0 14 0.21 3 2 0 0 1
...............................................................................................................................................................................TATTCTTGATCAGGGCGACGAGCTGA.................................................. 26 0 20 0.10 2 2 0 0 0
...........................................................................................................GGAAATCAGGGAATAATGGTTTTG........................................................................................................................ 24 0 14 0.07 1 1 0 0 0
.........................................................................................................TGGGAAATCAGGGAATAATGGTT........................................................................................................................... 23 0 14 0.07 1 1 0 0 0
..................................................................................................TTGAAAATGGCAAATCAGGGAATAATGG............................................................................................................................. 28 1 19 0.05 1 1 0 0 0
.................................................................................................................................................................................TTCTTGATCAGGGCGACGAGCTGA.................................................. 24 0 20 0.05 1 1 0 0 0
...................................................................................................................................................................................................................................GTACGTCCGTCTGTCCGC...... 18 1 20 0.05 1 0 0 0 1
............................................................................................................................................................................ATATATTCTTGATCAGGGCGACGAG...................................................... 25 0 20 0.05 1 1 0 0 0
.........................................................................................................TGGGAAATCAGGGAATAATGGTC........................................................................................................................... 23 1 20 0.05 1 0 0 0 1

Anti-sense strand reads

AACCAAATAGCGCACTTTAGCTTTTACGATCGCTACGGATATGGTGAGCCCATTCACGAATATGGGCTGAGCAGCACCGAAAAATATGGAACTTGGGTAACTTTTACCCTTTAGTCCCTTATTACCAAAACAGTTTACATACATTGTTCGTCTTCCTCCGCACCGCACCATATATATAAGAACTAGTCCCGCTGCTCGACTCAGCTAAATCGAGATAGGCAGACACGCAGGCAGGCAGACAGGCGTATAAA
**************************************************.......((((.........(((((((((((((((((((.((.((.............)).)).)))))))))..)))).))))))......))))********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M060
embryo
 V049
head
 M046
female body
................................................................................................................................................................................................................ATCGAGGTAGGCAGACGCGCAG..................... 22 2 2 0.50 1 1 0 0 0
.................................................................................................................................................................................................CCTCGACTCAGCTAAATCGAGATATG................................ 26 2 8 0.13 1 0 1 0 0
................................................................................................................................................................................................................................ACGCAGGCAGGCAGACAG......... 18 0 9 0.11 1 0 0 1 0
...........................................................................................................................................................................................................................AAGACACGCAGGCAGGCAGACAGGC....... 25 1 10 0.10 1 0 0 0 1
.......................................................................................................................................................................CCATATATATAAGAACTAGTCCCGCT.......................................................... 26 0 19 0.05 1 0 1 0 0
.......................................................................................................................................................................CCATATATATAAGAACTGG................................................................. 19 1 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:1158542-1158792 + dmo_1341 TTGGTTTATCGCG--TGAAA--------------T-------C----------GAAAATGC----TAGC--GATG--------------CCTAT-------------ACCAC-------------------------TCG--------------------GGTA-AG-TGCTT----AT--ACCC-----------------------------------------------------------------GACTCGTCG-----------------------------------------T----GGCTTTTTATACCTTGAACCCATTGAAAATGGGAAATCAGGGAATAATGGTTTTGT-CA-------AATGTATGTAACAAGC-AGAAGGAGGCGTGGC---------GTGGTATATATA-----TTCTTGATCAGGGCGACGAGCTGAGTCGATTTAGCTCTATCCGTCTGTGCGTCCGTCCGTCTGTCCGC----ATA--TTT
droVir3 scaffold_13042:1395834-1396086 + TACT------TCG--TGGAA--------------T-------G----------GGA---------------GATG--------------C----T---T-------------------TCTACAG------------CCAGTTAAATACA-------------AAGATC--C--CGTAC--ATC-------------------------------------------------------------------TT--------------------------------------T---A--TCA----GGCTTTTTATACCCTGAACCCATTAAAAATGGG-TAAAAGGGTATATTGTATTTGTGCGAAATCCAAATGTATGTAACAGGC-AGAAGGAAGCATCTCCGACCCCATAAAGTATATATA-----TTCTTGATCAGCATCAATAGCAGAGTTGATATAGCCATGTCCGTCTGTCTGTCCGCCCGTCAGT--------ATG--TTT
droGri2 scaffold_15203:9692851-9693043 - TGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AC--ACAT-----------------------------------------------------------------GTCTTGTGT-----------------------------------------T----CTCTTTTTATACCCTAAGCCCATTAAAAATGGGTAGAAAGGGAATAATGGTTTTGTGCA-------AATGTATGTAACATGC-AGAAGGAAGCATCTCCGACCCCATAAAGTATATATA-----TTCTTGATCGTGGTCAACAGCCGAGTCGATATAGCCACGTCCGTCTGTCCGTCCGTGCGTC-------------------
droWil2 scf2_1100000006030:1590-1826 - GTAGTTCATCGTT----TAC--------------TCGA----C----------GA-ATTCC----TAGAGAGCTT--------------C----G---C-------------------T-----------------------------------------------C------------TA----------------------------------------------------CCCG--------GGT--GTCCT----------------------GTGACA-------------CCTCAT---TGCTTTTTATATCCTT-----GC-----------AAAAAGGGTATATTAATTTTGT-CA-------AAAGTGTGCAACGCAT-AGAAGGAAGCATCTCCGACCATATAAAGTATATATA-----TTCTTAATCAGCACGGCGAGACGAGTTCAAATAGCCATGTCCGTCCGTCCGTCCGTCCGTCCGTCCGT----CTG--GAT
dp5 Unknown_singleton_2454:1236-1480 - TTGGACTAT---C----CTA--------------A-------C----------GA----------------GATT--------------C----C---T---CC--------TGCC--------GCAATGAACGTACTCT--------------------AC---------------------------------------------------------------------------------------------------------------------TGAA-----T--T---T--TGA----CCATTTTTATACCCGATACTCAAA----ATGAG-TATTGGGGTATATTCGATTTGTGGTAAAAGTGGATGTGTGTAACGTCC-AGAAGGAATTATATCCGACCCCATAAAGTATATATA-----TTCTTGATCAGCATCAATAGCCGAGTCGTTTGAGCCATGTCTGTCTGTCCGTCTGTCCGTCTGTCTGT----CTG--TCC
droPer2 scaffold_2030:5154-5416 - TTGTTTTCTAACG--TGTTA--------------T-------C----------AAAAA--C----TGT--------TAAT---------------GTT-----------------------------------------------------------------------------------A-------------------------------------CTTCAGGTGTGCCACA--------------------------------GGGAAGTCATC--TGGGCCCGC------T--TC-----TGTTTATTATACCCGATACTCAAA----ATGAG-TATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCC-AGAAGGAATCGTTTCCGAACCCATAAAGTATATATA-----TTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCCGTCCGTCTGTCCGT----CTG--TCC
droAna3 scaffold_13339:615145-615395 + TTAATTTAAAACG--TCAAA--------------A-------T----------AAAACTGT----T----------TTAT---------------GAAATGAACTATACAAG-------------------------TGA--------------------GC---------------------------------------------------------------------CA----AATTTTCATAGACTTCTTTCGTTGCTTTTAGGGAAA--------------------------------ACATTCTTATACCCTT-----GC-------------AAAGGGTATTATAATTTTGGTCA-------AAAGTTTGCAACGCAG-TAAAGGAGACATCTACGACCATAAAAAGTATATATA-----TTCTTGATCAGGATTACCTCCTGAGTCGATATAAGCATGTCCGTCTGTCTGTCGGTTTCTACGC--------A-------
droBip1 scf7180000394085:433577-433806 + TTAATTAACTATT--CGAAA--------------A-------T----------AAAAA-------------------------------------------------------------------------------------------------------------TA--------------------------------------------GCGATGCATCAGGTTTATT------------------------------------------------GCAAACACG------A--CTCGGGCTTCTCTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAG-TGAAGGAGACATCTCCGACCCTATAAAGTATATATA-----TTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCCGTCTGTCCGT----CTG--TCT
droKik1 scf7180000302285:12287-12529 + CTGGTTTGGGAC--A--GAGTCCAAAATGTGCATT-------C----------G------------AGA--GATGCTTATGACGTCA---------------TC-----------------------------------CGTCAA------------------A-GG-T--A--TGTAT--ATT-------------------------------------------------------------------T---T-----------------------------------T------CGT----ATGTTTTTATACCCTT-----G---------------CAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAG-TGAAGGAGACGTTTCCGACCCTATAAAGTATATATA-----TTCTTGATCAGAATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTTTCTACGC----A-A--ACT
droFic1 scf7180000454117:360877-361118 + TTAGTTTTG---ATA--AAA--------------T-------C----------AAAAA-------------------------------------------------------------------------------------------------------------TC--C--TGTAT--GTTTATATAAT--ACTAGCTGCCCGCCCAGCTTCGCCC-----------------G--------------------------------------------------GG----------------TTTTTTTTATACCCTT-----GCA------GAG-CAAAAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAG-TGAAGGAGACACCTCAGACCCCATAAAGTATATATA-----TTCTTGATCAGCATCACGAGTAGAATCAGAATACGTCTGTACGTCTGTCCGTCTGTCCGTCTGGCCGT----CTG--TCC
droEle1 scf7180000491212:1054896-1055125 - TAAAAGTAA---ATA--AA-----------------------------------------T----TATC--GATA--------------ACCAT-------------ATCAC-------------------------ATT--------------------ACTG-TT-TGATG----AT--ACTC-----------------------------------------------------------------GTTCCCTTC-----------------------------------------T----CAGTTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAG-TGAAGGAGACGTTTCCGACCCTATAAAGTATATATA-----TTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCTGT----CCG--TCT
droRho1 scf7180000778978:203-446 + GTTTGTCGGAGCT--TCTGA--------------A-------C----------GAAAGTGCAAGTGATA--GA-G--------------CCGAT-------------------------------------------TTC--------------------AC---------------------------------------------------------------------T----AAGTTTCCAAAG-----------------------------------------------A--TTA----GTGTGTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCT-AGAAGGAAGCGTTTCCGACCCTATAAAGTATATATA-----TTCTTGATCAGGATCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCTGT----CCG--TAT
droBia1 scf7180000301495:442325-442556 - TAGGTGTAT---GTG--AAA--------------T-------C----------GTC---------------AATG--------------G-------TT-------------------TTTGC--------C----------TCGATACG-------------A-GG-TGATT----TT--GT------------------------------------------------T------------------------------------------------TGA-------------TATCAG---AACTTTTTATACCCATTACTATTA------GAG-TAAGGGAGTATACTAGATTCGT-CG-------AAAGTGTATAGCAGGCAAGAAGGAAACGTTTCCGACCCCATAAAGTATATATA-----TTCTTGATCAGCGTCACAAGACGGGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTTTCTACG--------------C-A
droTak1 scf7180000414925:480-732 + TT----TACTGCG--CGGAA--------------T-------TATGTCC----G------------CGG--AA---TTATGACGCTATGC----C---G---AC--------TGCCAC-------------------ACT--------------------GC---------------------------------------------------------------------------------------------------------------------TTAA-----TTTTTGT-AATC-----AGTTTTTTATACCCTTTACTCGTA------GAG-TAAAAGGGTATATTCTATTCGTGCA-------AAAGTATGTAACAGGG-AGAAGGAAGCGTTTCCGACCCTTTAAAA-ATATATA-----TTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCTGTCTGTCTGTCTGTCCG--TAT
droEug1 scf7180000409097:5918-6163 - GTGATTTACTGTT--GAGTA--------------T-------C-----TGAAGG-----GT----GAGA--GTTT--------------CCTGA-------------ATTAT-------------------------TCT--------------------GGGC-AA------------TT----------------------------------------------------CT--------CACAG--AAT--------------------------------------T---A--TTT----GTATTATTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGAT-AGAAGGAAGCTTTTGCGACCCTATAAAGTATATATA-----TTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGT--------CCG--TAT
dm3 chrX:19854845-19855080 - TCGGTTTAACCCA--CGTAA--------------TCGAGTATC-----C----A-AA--GC----TAAC--GATT--------------C-------T-----------------CGTA-----------------------------------------------A------------TT----------------------------------------------------CT--------CAATT--AATCA----------------------GCT-------------------------AAATTTGAATACCAGTTACTCGTA------GAG-TAGAAGGTTATACTAGATTCGTTAAAAAAGC-----ATTGTAACAGGC-AGAATGAAGCGTTTCGAACTATATAAAGTATATATA-----TTCTTGATCAAGATCAATAGCCAAGTCGATCTAGCCATGTCCGTCTGTCCGTA------TCTGT--------CCGTAT-C
droSim2 2r:683097-683326 + GCTTACTAA---ATA--AAA--------------T-------C----------GATGT--------------------------------------------------------------------------------------------------------------TGTTG----AT--ACTCGCGTCATCCAACAGCTTTTAGACCAGACTGGAAT-----------------A--------------------------------------------------GG-----------------TTTAGTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATAATAGATT-GTTGA-------AAAGTATGTAACAGGC-ACAAGGAAGCGTTTCGAACTATA-AAAATATATATATTCTATTCTTGATCAGGATGAATAGCCGAGTCGATCAAGACATGTCCGTCTGTCCGTA--------------------------T
droSec2 scaffold_8:3287293-3287519 + GGGT--TACTGTG----TAA--------------A-------C----------AAACTTTC---------------TAAT---------------GTTC------------------------------------------------------------------------------------------------------------CCAACTTCGCAGGGTTAAGT-TATT------------------------------------------------GGGTATAGG------A--TTTG---TGGTTTTTATACCCGCTACTCGTA------GAG-AAAAAGGGTATACTAGATTCATTGA-------AGAGTATGTAACAGGC-AGAAGGAAGCGTTTCCGTCTATATAAAGTACATATA-----TTCCTGATCAGGATCAATAGCCGAGTCTATCTAGCCATCTTCGTATGAACGTC---------------------------
droYak3 v2_chr2h_random_005:247716-247969 - AATGTTGATTATG--TTGAA--------------T-------T----------GT-------------------------------------------T-------------------TCTGC--------C----------TGTATAGGCCTATTCGTTGATA-AG-CATTTAT--AT--GTAT-----------------------------------------------------------------GACTTTTCGAA----------------T-TTAA-----T----------TT----TTATTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGC-AGAAGGAATCGTTTCCG---------AGTATATATA-----TTCTTGATCAGGATTAATAGTCGAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTCTGTCTGTCCGT----CCG--TAT
droEre2 scaffold_4512:1216607-1216853 - TTGGGACATTACA--AGTAT----------------------T-----T----T-AA--GC----CACC--CATG--------------C-------T--------------------------TCTATGAA-----TCG-----AAAAA-------------AAAATAGCTT----AT--ACCC-----------------------------------------------------------------TTTTAATGC-----------------------------------------A----TGTTTATTATACCCCTAACTCGTA------GAG-TAAAAGGGTAAACTAGGTTCGTTGA-------AAAGTATGTAACAGGC-AGAAGGAAACGTTTCCAACCATATAAAGTTTATATA-----TTCTTGATCGGGATCAATCACCGAGTTGATCTGATCATGCCCGTCTGTCGGTCCGTCTGTC------------CT--TAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TTGGTTTATCGCG--TGAAA--------------T-------C----------GAAAATGC----TAGC--GATG--------------CCTAT-------------ACCAC-------------------------TCG--------------------GGTA-AG-TGCTT----AT--ACCC-----------------------------------------------------------------GACTCGTCG-----------------------------------------T----GGCTTTTTATACCTTGAACCCATTGAAAATGGGAAATCAGGGAATAATGGTTTTGT-CA-------AATGTATGTAACAAGC-AGAAGGAGGCGTGGC---------GTGGTATATATA-----TTCTTGATCAGGGCGACGAGCTGAGTCGATTTAGCTCTATCCGTCTGTGCGTCCGTCCGTCTGTCCGC----ATA--TTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGAATAATGGTTT.......................................................................................................................................................24140.213200010
......................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----TTCTTGATCAGGGCGACGAGCTGA........................................................26200.102200000
................................................................................................................................................................................................................................................................................................................................................GGAAATCAGGGAATAATGGTTTTG.....................................................................................................................................................24140.071100000
..............................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGAATAATGGTT........................................................................................................................................................23140.071100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGGCGACGAGCTGA........................................................24200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATATA-----TTCTTGATCAGGGCGACGAG............................................................25200.051100000
..............................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGAATAATGGTC........................................................................................................................................................23200.051000010
droVir3
TACT------TCG--TGGAA--------------T-------G----------GGA---------------GATG--------------C----T---T-------------------TCTACAG------------CCAGTTAAATACA-------------AAGATC--C--CGTAC--ATC-------------------------------------------------------------------TT--------------------------------------T---A--TCA----GGCTTTTTATACCCTGAACCCATTAAAAATGGG-TAAAAGGGTATATTGTATTTGTGCGAAATCCAAATGTATGTAACAGGC-AGAAGGAAGCATCTCCGACCCCATAAAGTATATATA-----TTCTTGATCAGCATCAATAGCAGAGTTGATATAGCCATGTCCGTCTGTCTGTCCGCCCGTCAGT--------ATG--TTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC-AGAAGGA..................................................................................................................27206.2012400000000000000000000000000124000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC-AGAAGGAAGCATC............................................................................................................26203.95790004000000000000000000000000000000750000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC-AGAAGG...................................................................................................................26202.70540000000000000000000000054000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGGTATATTG...........................................................................................................................................................26192.0539002010004000000000000002358441001021100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC-AGAAG....................................................................................................................25202.05410041000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGGTATAT.............................................................................................................................................................24190.5811001000001000000000000000221021000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGGTATATTGT..........................................................................................................................................................27190.428000000000000000000000000120010300000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGGTATATT............................................................................................................................................................25190.326001000000000000000000000310000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC-AG.......................................................................................................................22200.306000000000000000000000000000600000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGG..................................................................................................................................................................19200.306000000002000000000000000101000001010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC-AGAAGGAA.................................................................................................................28200.255000000000000000000000000000005000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATA-----TTCTTGATCAGCATCAATAG............................................................24200.255000000000000000000000001000000000000000400000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TGAACCCATTAAAAATGGG-TAAAAGGG..................................................................................................................................................................27200.204000000000000000000000000011001010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGC-AGAAGGAAGCATC............................................................................................................25200.204000000000000000000000000040000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGGTATATTC...........................................................................................................................................................26200.153000010001010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGGT.................................................................................................................................................................20200.153000000000000000000000000020010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGGTATA..............................................................................................................................................................23200.153001000000000000000000000100000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GAACCCATTAAAAATGGG-TAAAAGGG..................................................................................................................................................................26200.153000000000000000000000000001100010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGGTA................................................................................................................................................................21200.153000000000000000000000000000100011000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAACAGGC-AGAAGGAAGCATCT...........................................................................................................22200.102000000000000000000002000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGC-AGAAGGAAGCAT.............................................................................................................24200.102000000000000000000000000002000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATA-----TTCTTGATCAGCATCAATAGC...........................................................25200.102000020000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GC-AGAAGGAAGCATCTCCGACC.....................................................................................................22200.102000000000000000000000000000000200000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGG...................................................................................................................................................................18200.102000000001000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAACAGGC-AGAAGGAAGCATCTCCGACC.....................................................................................................28200.102002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CATTAAAAATGGG-TAAAAGGG..................................................................................................................................................................21200.102000000000000000000000000010001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ATCCAAATGTATGTAACAGGC-AGAAGG...................................................................................................................27200.102000000000000000000000000000000020000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ATCCAAATGTATGTAACAGGC-AGAAG....................................................................................................................26200.102000000000000000000000000000000000200000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----TTCTTGATCAGCATCAAT..............................................................21200.102000000000000000000000000200000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCAGAGT......................................................26110.091000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATA-----TTCTTGATCAGCATCAATAGCAG.........................................................27140.071000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----TTCTTGATCAGCATCAATAGCAG.........................................................26140.071000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGGTATATTGTA.........................................................................................................................................................28160.061000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TATATA-----TTCTTGATCAGCATC.................................................................21200.051000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................ATTAAAAATGGG-TAAAAGGGTAT...............................................................................................................................................................23200.051000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TAAAAATGGG-TAAAAGGGTATATTGTC.........................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGTATATATA-----TTCTTGATCAGCAT..................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TAAAAATGGG-TAAAAGGGTAT...............................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................ATTAAAAATGGG-TAAAAGGGT.................................................................................................................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TAAAAGGGTATATTGTC.........................................................................................................................................................28200.051000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----TTCTTGATCAGCATCAATA.............................................................22200.051000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AAAATGGG-TAAAAGGGTATATTGTATC.......................................................................................................................................................27200.051000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGC-AGAAGGAAGCATC............................................................................................................24200.051000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCTGTCCGCCCG.....................19200.051000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC-AGA......................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGC-AGAAGGA..................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AACAGGC-AGAAGGAAGCA..............................................................................................................18200.051000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAACAGGC-AGAAGGAAGCATCTC..........................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTGTATTTGTGCGAAATCCAAA........................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GGTATATTGTATTTGTGCGAA...............................................................................................................................................21200.051000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ATACCCTGAACCCATTAAAA................................................................................................................................................................................20200.051100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGC-AGAAGGAAG................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GAAATCCAAATGTATGTAACAGGC-A........................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TGAACCCATTAAAAATGGG-TAAAAGG...................................................................................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATATATA-----TTCTTGATCAGC....................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGC-AGAAGGA..................................................................................................................25200.051000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................AACCCATTAAAAATGGG-TAAAAGGGA.................................................................................................................................................................26200.051000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CATAAAGTATATATA-----TTCTTGATCAGCA...................................................................28200.051000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................AAATCCAAATGTATGTAACAGGC-AG.......................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AAAGGGTATATTGTATTTG.....................................................................................................................................................19200.051000000000100000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................A-----TTCTTGATCAGCATCAATAG............................................................21200.051000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TAAAAATGGG-TAAAAGGGTC................................................................................................................................................................20200.051000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GCGAAATCCAAATGTATGTAACAGGC-A........................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATA-----TTCTTGATCAGCA...................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AAAGGGTATATTGTATTTGTG...................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ACAGGC-AGAAGGAAGCATCT...........................................................................................................20200.051000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CCATTAAAAATGGG-TAAAAGGGT.................................................................................................................................................................23200.051000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----TTCTTGATCAGCATCAATAGCA..........................................................25200.051000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATA-----TTCTTGATCAGC....................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CATTAAAAATGGG-TAAAAGGGT.................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGC-AGAAGGAAGCATCT...........................................................................................................28200.051000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCATCTCCGACC.....................................................................................................19200.051000000000000000000000000000000100000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGC-AGAAGGAAGCATCTCC.........................................................................................................28200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC-AGAAGGAAG................................................................................................................29200.051000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TATTTGTGCGAAATCCAAATGTAT...................................................................................................................................24200.051000000000000000000000000000000000001000000000000000000000000000
droGri2
TGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AC--ACAT-----------------------------------------------------------------GTCTTGTGT-----------------------------------------T----CTCTTTTTATACCCTAAGCCCATTAAAAATGGGTAGAAAGGGAATAATGGTTTTGTGCA-------AATGTATGTAACATGC-AGAAGGAAGCATCTCCGACCCCATAAAGTATATATA-----TTCTTGATCGTGGTCAACAGCCGAGTCGATATAGCCACGTCCGTCTGTCCGTCCGTGCGTC-------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTAGTTCATCGTT----TAC--------------TCGA----C----------GA-ATTCC----TAGAGAGCTT--------------C----G---C-------------------T-----------------------------------------------C------------TA----------------------------------------------------CCCG--------GGT--GTCCT----------------------GTGACA-------------CCTCAT---TGCTTTTTATATCCTT-----GC-----------AAAAAGGGTATATTAATTTTGT-CA-------AAAGTGTGCAACGCAT-AGAAGGAAGCATCTCCGACCATATAAAGTATATATA-----TTCTTAATCAGCACGGCGAGACGAGTTCAAATAGCCATGTCCGTCCGTCCGTCCGTCCGTCCGTCCGT----CTG--GATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCCGTCCGTCCGTCCG.....................22200.10202000
........TCGTT----TAC--------------TCGA----C----------GA-ATTCC----TAGAGAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................29100.10101000
.................TAC--------------TCGA----C----------GA-ATTCC----TAGAGAGCTT--------------C----G---C-------------------T-----------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................29110.09101000
.................TAC--------------TCGA----C----------GA-ATTCC----TAGAGAGCTT--------------C----G---C-------------------.......................................................................................................................................................................................................................................................................................................................................................................................................28110.09101000
...................................CGA----C----------GA-ATTCC----TAGAGAGCTT--------------C----G---C-------------------T-----------------------------------------------C------------..........................................................................................................................................................................................................................................................................................................................................26200.05100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCGTCCGTCCGTCCGTCC..................21200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAT-AGAAGGAAGCATCTC..........................................................................................................26200.05101000
...........................................................CC----TAGAGAGCTT--------------C----G---C-------------------T-----------------------------------------------C------------TA----------------------------------------------------CCCG--------GGT--G..................................................................................................................................................................................................................................................................27200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCCGTCCGTCCGTCCGTCC..................27200.05100100
...................................................................................................................................................................................................................................................................................................................................................................................AAAGTGTGCAACGCAT-AGAAG....................................................................................................................21200.05101000
.................................................................TAGAGAGCTT--------------C----G---C-------------------T-----------------------------------------------C------------TA----------------------------------------------------CCCG--------G.......................................................................................................................................................................................................................................................................22200.05100100
..................................................................AGAGAGCTT--------------C----G---C-------------------T-----------------------------------------------C------------TA----------------------------------------------------CCCG--------GGT--G..................................................................................................................................................................................................................................................................24200.05100010
..................................TCGA----C----------GA-ATTCC----TAGAGAGCTT--------------C----G---C-------------------T-----------------------------------------------C------------..........................................................................................................................................................................................................................................................................................................................................27200.05101000
..................................TCGA----C----------GA-ATTCC----TAGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
dp5
TTGGACTAT---C----CTA--------------A-------C----------GA----------------GATT--------------C----C---T---CC--------TGCC--------GCAATGAACGTACTCT--------------------AC---------------------------------------------------------------------------------------------------------------------TGAA-----T--T---T--TGA----CCATTTTTATACCCGATACTCAAA----ATGAG-TATTGGGGTATATTCGATTTGTGGTAAAAGTGGATGTGTGTAACGTCC-AGAAGGAATTATATCCGACCCCATAAAGTATATATA-----TTCTTGATCAGCATCAATAGCCGAGTCGTTTGAGCCATGTCTGTCTGTCCGTCTGTCCGTCTGTCTGT----CTG--TCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGT...................................................26315.334604310200000
....................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTG..................................................................................................................................232011.80236000000236000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGTT..................................................2731.0030300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAGTCGT...................................................2721.0020200000000
..........................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTGGATGTGTGTAAC..............................................................................................................................21200.651301300000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCC..............................20200.601200000012000
......................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGTAACG.............................................................................................................................26200.501000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCCATGTCTGTCTGTCC..............................2320.5010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGTTT.................................................2820.5010010000000
.....................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTG....................................................................................................................................20200.501000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGTTT.................................................2420.5010000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTCTGTCTGT----CTG--...2450.4020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAGTCGT...................................................2530.3310100000000
..............................................................................................................................................................................................................................................................................................................................................................................AAGTGGATGTGTGTAACGTC...........................................................................................................................20200.2550000000050
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGT...................................................2140.2511000000000
....................................................................................................................................................................................................................................................................................................................................................ATTGGGGTATATTCGATTTGTGGTAAA..............................................................................................................................................2760.1710100000000
....................................................................................................................................................................................................................................................................................................................................TCAAA----ATGAG-TATTGGGGTATATTCG..........................................................................................................................................................26140.1420200000000
.............................................................................................................................................................................................................................................................................................................................................ATGAG-TATTGGGGTATATTC...........................................................................................................................................................20150.1320100001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGTTC.................................................2880.1310100000000
................................................................................................................................................................................................................................................................................................................................................................TCGATTTGTGGTAAAAGTG..........................................................................................................................................1980.1310100000000
.................................................................................................................................................................................................................................................................................................................................................................CGATTTGTGGTAAAAGTGGA........................................................................................................................................2080.1310100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCCGTCTGTCTGT----C.......21100.1010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCG.............................21200.1022000000000
....................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGA...................................................................................................................................22200.1020000002000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGTA..................................................27100.1010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACGTCC-AGAAGGAATT...............................................................................................................22130.0810000001000
...................................................................................................................................................................................................................................................................................................................................CTCAAA----ATGAG-TATTGGGGTATATTCG..........................................................................................................................................................27140.0710100000000
...................................................................................................................................................................................................................................................................................................................................................TATTGGGGTATATTCGATTTGTGG..................................................................................................................................................24140.0710100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCTGT----CTG--TCC21140.0710100000000
....................................................................................................................................................................................................................................................................................................................................TCAAA----ATGAG-TATTGGGGTATATTC...........................................................................................................................................................25140.0710100000000
..............................................................................................................................................................................................................................................................................................................................................TGAG-TATTGGGGTATATTCGATT.......................................................................................................................................................23150.0710100000000
...................................................................................................................................................................................................................................................................................................................................................TATTGGGGTATATTCGATTTG.....................................................................................................................................................21160.0610100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGTC..................................................27160.0610100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTCTG.........................20200.0510000100000
...................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGTGT...................................................................................................................................23200.0510000100000
..........................................................................................................................................................................................................................................................................................................................................................GTATATTCGATTTGTGGT.................................................................................................................................................18200.0510000100000
...............................................................................................................................................................................................................................................................................................................................................................................AGTGGATGTGTGTAACGTCC-.........................................................................................................................20200.0510000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCGTCTGTCCGTCTT.................22200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................AAGTGGATGTGTGTAACGT............................................................................................................................19200.0510000100000
.....................................................................................................................................................................................................................................................................................................................................CAAA----ATGAG-TATTGGGGTATAT.............................................................................................................................................................22200.0510010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGTCCGTCTGTCCG.....................22200.0510000100000
...............................................................................................................................................................................................................................................................................................................................GATACTCAAA----ATGAG-TATTG.....................................................................................................................................................................20200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTGTCCGTCTGTCCGT....................22200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTGGATGTGTGT.................................................................................................................................18200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTC..................................................................................................................................23200.0510000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATATATA-----TTC.............................................................................26200.0510000000100
...................................................................................................................................................................................................................................................................................................................................................................................GATGTGTGTAACGTCC-AGAAG....................................................................................................................21200.0510000000010
.....................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTGT.................................................................................................................................23200.0510010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTCTGTCCGT....................25200.0510000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATAAAGTATATATA-----TTCTTG..........................................................................24200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGTCTGTCCGTCTG.........................19200.0510000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATA-----TTCTTGATCAGC....................................................................19200.0510000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCTGTCCGTCTGTC...............22200.0510000100000
droPer2
TTGTTTTCTAACG--TGTTA--------------T-------C----------AAAAA--C----TGT--------TAAT---------------GTT-----------------------------------------------------------------------------------A-------------------------------------CTTCAGGTGTGCCACA--------------------------------GGGAAGTCATC--TGGGCCCGC------T--TC-----TGTTTATTATACCCGATACTCAAA----ATGAG-TATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCC-AGAAGGAATCGTTTCCGAACCCATAAAGTATATATA-----TTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCCGTCCGTCTGTCCGT----CTG--TCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................TCAAA----ATGAG-TATTGGGGTATATTAGAT........................................................................................................................................................28200.255050000
................................................................................................TT-----------------------------------------------------------------------------------A-------------------------------------CTTCAGGTGTGCCACA--------------------------------GGGA..............................................................................................................................................................................................................................................23200.204040000
............................................................................................................................................................................................................................................................................................................................................................................................AACGTCC-AGAAGGAATCGTTTCCGAA......................................................................................................26200.153030000
................................................................................................................................................................................................................................................................................................................................................................................................TCC-AGAAGGAATCGTTTCCGAA......................................................................................................22200.102000002
...........................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTTCCGAACCCATAAAGT............................................................................................22200.051010000
....................................................................................................................................................................................................................................TGCCACA--------------------------------GGGAAGTCATC--TGGG.................................................................................................................................................................................................................................22200.051000001
................................................................................................................................................................................................................................................................................................................................................................................................TCC-AGAAGGAATCGTTTCCGAACCCAT.................................................................................................27200.051010000
..................................................................................................................................................................................................................................TGTGCCACA--------------------------------GGGAAGTCATC--TGG..................................................................................................................................................................................................................................23200.051010000
.....................................................................................................................................................................................A-------------------------------------CTTCAGGTGTGCCACA--------------------------------GGGAAG............................................................................................................................................................................................................................................23200.051010000
droAna3
TTAATTTAAAACG--TCAAA--------------A-------T----------AAAACTGT----T----------TTAT---------------GAAATGAACTATACAAG-------------------------TGA--------------------GC---------------------------------------------------------------------CA----AATTTTCATAGACTTCTTTCGTTGCTTTTAGGGAAA--------------------------------ACATTCTTATACCCTT-----GC-------------AAAGGGTATTATAATTTTGGTCA-------AAAGTTTGCAACGCAG-TAAAGGAGACATCTACGACCATAAAAAGTATATATA-----TTCTTGATCAGGATTACCTCCTGAGTCGATATAAGCATGTCCGTCTGTCTGTCGGTTTCTACGC--------A-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................TTATAATTTTGGTCA-------AAAGTTTGC.................................................................................................................................24200.102020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTACCTCC...........................................................21200.102110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATGTCCGTCTGTCTGTCGG.........................23200.102200000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCAACGCAG-TAAAGGAGACA..............................................................................................................21200.051000010
.........................................................................................................................................................................................................................................................................................................................................................GGTATTATAATTTTGGTCA-------AAAGTT....................................................................................................................................25200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATATAAGCATGTCCGTCTG.................................25200.051001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----TTCTTGATCAGGATTACCTCC...........................................................24200.051010000
....................................................................................................................................................................................................................................................................................................................................................................TTTGGTCA-------AAAGTTTGCAACG.............................................................................................................................21200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATAAGCATGTCCGTCTGT................................23200.051100000
....................................................................................................................................................................................................................................................................................................................................................................TTTGGTCA-------AAAGTTTGCAACGCAG-T........................................................................................................................25200.051000010
..................................................................................................................................................................................................................................................................................................................................................................ATTTTGGTCA-------AAAGTTTGCAACG.............................................................................................................................23200.051001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGTATATATA-----TTCTTGATCAGGATTACC..............................................................28200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCATGTCCGTCTGTCTGTCGGTTTC.....................28200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCATGTCCGTCTGTCTGTCGGTTT......................28200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCTGTCGGTTTCTACG.................24200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCATGTCCGTCTGTCTGTCGGTT.......................27200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTCCGTCTGTCTGTCGGTT.......................24200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGCATGTCCGTCTGTCT..............................21200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATGTCCGTCTGTCTGTCGGT........................24200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGTCGGTTTCTACGC--------A-------21200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATATAAGCATGTCC......................................20200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATAAGCATGTCCGTCTGTCTGT............................26200.051010000
...............................................................................................................................................................................................................................................................................................................................................................ATAATTTTGGTCA-------AAAGTTTGC.................................................................................................................................22200.051001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATTACCTCCTGAGTCG....................................................22200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATAAGCATGTCCGTCTGTCTGT............................27200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTCCGTCTGTCTGTCGGTTTCTAC..................28200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCATGTCCGTCTGTCTGTC...........................22200.051010000
droBip1
TTAATTAACTATT--CGAAA--------------A-------T----------AAAAA-------------------------------------------------------------------------------------------------------------TA--------------------------------------------GCGATGCATCAGGTTTATT------------------------------------------------GCAAACACG------A--CTCGGGCTTCTCTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAG-TGAAGGAGACATCTCCGACCCTATAAAGTATATATA-----TTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCCGTCTGTCCGT----CTG--TCTSizeHit CountTotal NormTotal
No Reads
droKik1
CTGGTTTGGGAC--A--GAGTCCAAAATGTGCATT-------C----------G------------AGA--GATGCTTATGACGTCA---------------TC-----------------------------------CGTCAA------------------A-GG-T--A--TGTAT--ATT-------------------------------------------------------------------T---T-----------------------------------T------CGT----ATGTTTTTATACCCTT-----G---------------CAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAG-TGAAGGAGACGTTTCCGACCCTATAAAGTATATATA-----TTCTTGATCAGAATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTTTCTACGC----A-A--ACTSizeHit CountTotal NormTotal
No Reads
droFic1
TTAGTTTTG---ATA--AAA--------------T-------C----------AAAAA-------------------------------------------------------------------------------------------------------------TC--C--TGTAT--GTTTATATAAT--ACTAGCTGCCCGCCCAGCTTCGCCC-----------------G--------------------------------------------------GG----------------TTTTTTTTATACCCTT-----GCA------GAG-CAAAAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAG-TGAAGGAGACACCTCAGACCCCATAAAGTATATATA-----TTCTTGATCAGCATCACGAGTAGAATCAGAATACGTCTGTACGTCTGTCCGTCTGTCCGTCTGGCCGT----CTG--TCCSizeHit CountTotal NormTotal
No Reads
droEle1
TAAAAGTAA---ATA--AA-----------------------------------------T----TATC--GATA--------------ACCAT-------------ATCAC-------------------------ATT--------------------ACTG-TT-TGATG----AT--ACTC-----------------------------------------------------------------GTTCCCTTC-----------------------------------------T----CAGTTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAG-TGAAGGAGACGTTTCCGACCCTATAAAGTATATATA-----TTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCTGT----CCG--TCTSizeHit CountTotal NormTotal
No Reads
droRho1
GTTTGTCGGAGCT--TCTGA--------------A-------C----------GAAAGTGCAAGTGATA--GA-G--------------CCGAT-------------------------------------------TTC--------------------AC---------------------------------------------------------------------T----AAGTTTCCAAAG-----------------------------------------------A--TTA----GTGTGTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCT-AGAAGGAAGCGTTTCCGACCCTATAAAGTATATATA-----TTCTTGATCAGGATCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCTGT----CCG--TATSizeHit CountTotal NormTotal
No Reads
droBia1
TAGGTGTAT---GTG--AAA--------------T-------C----------GTC---------------AATG--------------G-------TT-------------------TTTGC--------C----------TCGATACG-------------A-GG-TGATT----TT--GT------------------------------------------------T------------------------------------------------TGA-------------TATCAG---AACTTTTTATACCCATTACTATTA------GAG-TAAGGGAGTATACTAGATTCGT-CG-------AAAGTGTATAGCAGGCAAGAAGGAAACGTTTCCGACCCCATAAAGTATATATA-----TTCTTGATCAGCGTCACAAGACGGGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTTTCTACG--------------C-ASizeHit CountTotal NormTotal
No Reads
droTak1
TT----TACTGCG--CGGAA--------------T-------TATGTCC----G------------CGG--AA---TTATGACGCTATGC----C---G---AC--------TGCCAC-------------------ACT--------------------GC---------------------------------------------------------------------------------------------------------------------TTAA-----TTTTTGT-AATC-----AGTTTTTTATACCCTTTACTCGTA------GAG-TAAAAGGGTATATTCTATTCGTGCA-------AAAGTATGTAACAGGG-AGAAGGAAGCGTTTCCGACCCTTTAAAA-ATATATA-----TTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCTGTCTGTCTGTCTGTCCG--TATSizeHit CountTotal NormTotal
No Reads
droEug1
GTGATTTACTGTT--GAGTA--------------T-------C-----TGAAGG-----GT----GAGA--GTTT--------------CCTGA-------------ATTAT-------------------------TCT--------------------GGGC-AA------------TT----------------------------------------------------CT--------CACAG--AAT--------------------------------------T---A--TTT----GTATTATTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGAT-AGAAGGAAGCTTTTGCGACCCTATAAAGTATATATA-----TTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGT--------CCG--TATSizeHit CountTotal NormTotal
No Reads
dm3
TCGGTTTAACCCA--CGTAA--------------TCGAGTATC-----C----A-AA--GC----TAAC--GATT--------------C-------T-----------------CGTA-----------------------------------------------A------------TT----------------------------------------------------CT--------CAATT--AATCA----------------------GCT-------------------------AAATTTGAATACCAGTTACTCGTA------GAG-TAGAAGGTTATACTAGATTCGTTAAAAAAGC-----ATTGTAACAGGC-AGAATGAAGCGTTTCGAACTATATAAAGTATATATA-----TTCTTGATCAAGATCAATAGCCAAGTCGATCTAGCCATGTCCGTCTGTCCGTA------TCTGT--------CCGTAT-CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCT..................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATATAAAGTATATATA-----TTCTTGAT........................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGTCCG.............................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCGTA------.....................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTC...................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTCC..............................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCCAAGTCGA...................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCG.............................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGTCCGTA------.....................18200.0510000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCAAGTCGATCT................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCGT............................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCG.....................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCCATGTCCGT....................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTC...............................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGTCCG.............................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
droSim2
GCTTACTAA---ATA--AAA--------------T-------C----------GATGT--------------------------------------------------------------------------------------------------------------TGTTG----AT--ACTCGCGTCATCCAACAGCTTTTAGACCAGACTGGAAT-----------------A--------------------------------------------------GG-----------------TTTAGTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATAATAGATT-GTTGA-------AAAGTATGTAACAGGC-ACAAGGAAGCGTTTCGAACTATA-AAAATATATATATTCTATTCTTGATCAGGATGAATAGCCGAGTCGATCAAGACATGTCCGTCTGTCCGTA--------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAGCCGAGTCGATC.................................................1930.67200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATGAATAGCCGAGTCGATCAA...............................................2620.50100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGCCGAGTCGATCAAGACATG.........................................2520.50100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC-ACAAGGA..................................................................................................................2420.50100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................TAATAGATT-GTTGA-------AAAA......................................................................................................................................1830.33100000001000000000
....................................................................................................................................................................................................................................................................................................................................TCGTA------GAG-TAAAAGGGTA................................................................................................................................................................18200.30600000000006000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATGAA...............................................................1780.13100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................TT-GTTGA-------AAAGTATGTAACAGGC-A........................................................................................................................24100.10100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................TT-GTTGA-------AAAGTATGTAACAGGC-.........................................................................................................................23100.10100000000000001000
.................................................................................................................................................................................................................................................................................................................................................G-TAAAAGGGTATAATAGATT-......................................................................................................................................................20100.10100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATC.................................................15200.10200000000002000000
................................................................................................................................................................................................................................................................................................................................TTACTCGTA------GAG-TAAAAGGGT.................................................................................................................................................................21200.10200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCA................................................17160.06100000000001000000
.......................................................................................................................................................................................................................................................................................................................TTATACCCGTTACTCGTA------GAG-TAAAA.....................................................................................................................................................................26200.05100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTA--------------------------.16200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC-A........................................................................................................................18200.05100000001000000000
....................................................................................................................................................................................................................................................................................................................................TCGTA------GAG-TAAAAGGGTATA..............................................................................................................................................................20200.05100000000001000000
....................................................................................................................................................................................................................................................................................................................................TCGTA------GAG-TAAAAGGGT.................................................................................................................................................................17200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCCGTA--------------------------.15200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................TACTCGTA------GAG-TAAAA.....................................................................................................................................................................16200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................TATACCCGTTACTCGTA------GAG-TAAAAG....................................................................................................................................................................26200.05100000001000000000
droSec2
GGGT--TACTGTG----TAA--------------A-------C----------AAACTTTC---------------TAAT---------------GTTC------------------------------------------------------------------------------------------------------------CCAACTTCGCAGGGTTAAGT-TATT------------------------------------------------GGGTATAGG------A--TTTG---TGGTTTTTATACCCGCTACTCGTA------GAG-AAAAAGGGTATACTAGATTCATTGA-------AGAGTATGTAACAGGC-AGAAGGAAGCGTTTCCGTCTATATAAAGTACATATA-----TTCCTGATCAGGATCAATAGCCGAGTCTATCTAGCCATCTTCGTATGAACGTC---------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----TTCCTGATCAGGATCAATAGCCGA........................................................2650.2011000
..............................................................................................................................................................................................................................................................................................................................................................................................CAGGC-AGAAGGAAGCGTTTCCGT.......................................................................................................2370.1410010
........................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGC-AGAAGGAA.................................................................................................................19200.0510100
droYak3
AATGTTGATTATG--TTGAA--------------T-------T----------GT-------------------------------------------T-------------------TCTGC--------C----------TGTATAGGCCTATTCGTTGATA-AG-CATTTAT--AT--GTAT-----------------------------------------------------------------GACTTTTCGAA----------------T-TTAA-----T----------TT----TTATTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGC-AGAAGGAATCGTTTCCG---------AGTATATATA-----TTCTTGATCAGGATTAATAGTCGAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTCTGTCTGTCCGT----CCG--TATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................TATAGGCCTATTCGTTGATA-AG-CATT.................................................................................................................................................................................................................................................................................................................................................2616.00600000000006
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCTGTCTGTCCGT----CC......23200.20400400000000
...................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGC-AGAAG....................................................................................................................21200.15303000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCCGTCTGTCTGTCCGT----CCG--...26200.10202000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACAGGC-AGAAGGAAT................................................................................................................28200.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCTGTCTGTCCGT----CCG--TA.26200.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCTGTCTGTCCGT----CCG--T..25200.05101000000000
droEre2
TTGGGACATTACA--AGTAT----------------------T-----T----T-AA--GC----CACC--CATG--------------C-------T--------------------------TCTATGAA-----TCG-----AAAAA-------------AAAATAGCTT----AT--ACCC-----------------------------------------------------------------TTTTAATGC-----------------------------------------A----TGTTTATTATACCCCTAACTCGTA------GAG-TAAAAGGGTAAACTAGGTTCGTTGA-------AAAGTATGTAACAGGC-AGAAGGAAACGTTTCCAACCATATAAAGTTTATATA-----TTCTTGATCGGGATCAATCACCGAGTTGATCTGATCATGCCCGTCTGTCGGTCCGTCTGTC------------CT--TATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGC-AGAAGGAAAC...............................................................................................................21200.0511000000

Generated: 05/18/2015 at 12:16 AM