ID:

dmo_1339

 Coordinate:

scaffold_6498:1141051-1141201 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.7 -14.6 -14.6

Flybase annnotation

exon [dmoj_GLEANR_14174:3]; CDS [Dmoj\GI14094-cds]; intron [Dmoj\GI14094-in]

No Repeatable elements found

mature
  1. scaffold_3929:3264-3289 +
  2. scaffold_3993:6034-6059 +
  3. scaffold_4054:284-309 +
  4. scaffold_4315:47687-47712 +
  5. scaffold_5057:92-117 +
  6. scaffold_6355:4743-4768 +
  7. scaffold_6473:10858053-10858078 +
  8. scaffold_6482:2103343-2103368 +
  9. scaffold_6495:42985-43010 +
  10. scaffold_6496:12887126-12887151 +
  11. scaffold_6496:26457790-26457815 +
  12. scaffold_6498:726618-726643 +
  13. dmo_1339  scaffold_6498:1141066-1141091 +
  14. scaffold_6498:2686425-2686450 +
  15. scaffold_6501:284581-284606 +
  16. scaffold_6540:1358592-1358617 +
  17. scaffold_6540:6079563-6079588 +
  18. scaffold_6540:19893895-19893920 +
  19. scaffold_6541:621067-621092 +
  20. scaffold_6680:24541638-24541663 +
star
  1. scaffold_275:641-667 +
  2. scaffold_3584:404-430 +
  3. scaffold_5052:3853-3879 +
  4. scaffold_5057:144-170 +
  5. scaffold_6375:25467-25493 +
  6. scaffold_6473:4225545-4225571 +
  7. scaffold_6498:726670-726696 +
  8. scaffold_6498:921904-921930 +
  9. scaffold_6498:3287106-3287132 +
  10. scaffold_6500:31734342-31734368 +
  11. dmo_2668  scaffold_6500:31766883-31766909 +
  12. dmo_2738  scaffold_6500:31772771-31772797 +
  13. scaffold_6501:145268-145294 +
  14. scaffold_6540:243362-243388 +
  15. scaffold_6540:13779694-13779720 +
  16. scaffold_6540:19893947-19893973 +
  17. scaffold_6540:19934317-19934343 +
  18. scaffold_6680:23417549-23417575 +
  19. scaffold_6680:23918446-23918472 +
  20. scaffold_6680:24541690-24541716 +
  21. scaffold_25:2234-2260 +
  22. scaffold_3374:341-367 +
  23. scaffold_3736:895-921 +
  24. scaffold_3929:3316-3342 +
  25. scaffold_4847:1543-1569 +
  26. scaffold_5486:3548-3574 +
  27. scaffold_5811:7904-7930 +
  28. scaffold_6356:8744-8770 +
  29. scaffold_6359:3579133-3579159 +
  30. dmo_1339  scaffold_6498:1141118-1141144 +
  31. scaffold_6500:25378464-25378490 +
  32. scaffold_6501:165002-165028 +
  33. scaffold_6541:628178-628204 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATATATAAGAACATATATAAGTTAAGCGCTCCCACACTAGAGTACTATGAACTGAACTAAATCTGTTCAACTGGTTAGGTTCTCCCCTTGAATGTCTGACTGGACTCTCCAGCCTGCTTAGATTGTCGAAAGTCTTAACTTATATAATAAGAACAGCCATAACATGTAATAATACTGAAAGATATACATATTTGTTTTTAGAAAAATTCAAAGGGCTAGACGCACCTTCTATTCCGCATGTGCCTAAATTA
*****************************************************************.......(((((((..((....((((..(((((((((((...))))).....))))))..)))).)).)))))))....*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V056
head
 V110
male body
.................................................................TTCAACTGGTTAGGTTCTCCCCTTGA................................................................................................................................................................ 26 0 20 3.30 66 66 0 0 0
..................................................................TCAACTGGTTAGGTTCTCCCCTTG................................................................................................................................................................. 24 0 20 1.35 27 27 0 0 0
.....................................TAGAGTACTATGAACTGAACTAAATC............................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
...................................................................CAACTGGTTAGGTTCTCCCCTTGAATGT............................................................................................................................................................ 28 0 20 0.55 11 0 11 0 0
....................................................................AACTGGTTAGGTTCTCCCCTTGAA............................................................................................................................................................... 24 0 20 0.50 10 10 0 0 0
..................................................................TCAACTGGTTAGGTTCTCCCCTT.................................................................................................................................................................. 23 0 20 0.40 8 8 0 0 0
........................................................................................TGAATGTCTGACTGGACTCTCCAGC.......................................................................................................................................... 25 0 20 0.35 7 7 0 0 0
....................................................................AACTGGTTAGGTTCTCCCCTTG................................................................................................................................................................. 22 0 20 0.30 6 6 0 0 0
...................................................................CAACTGGTTAGGTTCTCCCCTTGAATG............................................................................................................................................................. 27 0 20 0.30 6 0 6 0 0
..................................................................................................................TGCTTAGATTGTCGAAAGTCTTAACC............................................................................................................... 26 1 4 0.25 1 1 0 0 0
...............................................TGAACTGAACTAAATCTGTTCAACTGG................................................................................................................................................................................. 27 0 9 0.22 2 2 0 0 0
...................................................................CAACTGGTTAGGTTCTCCCCTTGAATGC............................................................................................................................................................ 28 1 20 0.20 4 0 4 0 0
................................................................GTTCAACTGGTTAGGTTCTCCCCTTG................................................................................................................................................................. 26 0 20 0.15 3 3 0 0 0
..................................................................TCAACTGGTTAGGTTCTCCCCTTGAAT.............................................................................................................................................................. 27 0 20 0.15 3 0 3 0 0
.....................................................................................................................TTAGATTGTCGAAAGTCTTAACTTATA........................................................................................................... 27 0 20 0.15 3 0 3 0 0
.......................................................................................TTGAATGTCTGACTGGACTCTCCAGCC......................................................................................................................................... 27 0 20 0.15 3 0 3 0 0
....................................................................AACTGGTTAGGTTCTCCCCTT.................................................................................................................................................................. 21 0 20 0.15 3 3 0 0 0
...................................................................................CCCCTTGAATGTCTGACTGGACTCTCC............................................................................................................................................. 27 0 20 0.15 3 0 3 0 0
...................................................................CAATTGGTTAGGTTCTCCCCTTGAAT.............................................................................................................................................................. 26 1 20 0.15 3 0 3 0 0
.........................................................................................GAATGTCTGACTGGACTCTCCAGCC......................................................................................................................................... 25 0 20 0.15 3 2 1 0 0
...............................................................TGTTCAACTGGTTAGGTTCTCCCC.................................................................................................................................................................... 24 0 20 0.15 3 3 0 0 0
..................................................................................TCCCCTTGAATGTCTGACTGGACTCT............................................................................................................................................... 26 0 20 0.15 3 0 3 0 0
...................................................................CAACTGGTTAGGTTCTCCCCT................................................................................................................................................................... 21 0 20 0.15 3 0 3 0 0
...............................................TGAACTGAACTAAATCTGTTCAACTGGT................................................................................................................................................................................ 28 0 8 0.13 1 1 0 0 0
...................................................................CAACTGGTTAGGTTCTCCCCTTGAAA.............................................................................................................................................................. 26 1 20 0.10 2 2 0 0 0
..................................................................TCAACTGGTTAGGTTCTCCCC.................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0
............................................................ATCTGTTCAACTGGTTAGGTTCTCCCC.................................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0
.................................................................TTCAACTGGTTAGGTTCTCCC..................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0
.....................................................................ACTGGTTAGGTTCTCCCCTTGA................................................................................................................................................................ 22 0 20 0.10 2 2 0 0 0
.............................................TATGAACTGAACTAAATCTG.......................................................................................................................................................................................... 20 0 12 0.08 1 1 0 0 0
..............................................ATGAACTGAACTAAATCTG.......................................................................................................................................................................................... 19 0 13 0.08 1 1 0 0 0
..............................................ATGAACTGAACTAAATCTGTT........................................................................................................................................................................................ 21 0 13 0.08 1 1 0 0 0
.....................................................................................CCTTGAATGTCTGACTGGACTCTC.............................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
.....................................................................................................................GTAGATTATCGAAAGTCTTAACTTA............................................................................................................. 25 2 20 0.05 1 1 0 0 0
..........................................................................................AATGTCTGACTGGACTCTCCAGC.......................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
...................................................................CAATTGGTTAGGTTCTCCCCTTGAATG............................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0
..................................................................ACAACTGGTTAGGTTCTCCCCTTGAA............................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0
................................................................ATTCAACTGGTTAGGTTCTCCCCTTG................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0
.................................................................TTCAACTGGTTAGTTTCTCCCCTT.................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0
..........................................................................TTAGGTTCTCCCCTTGAATGTCTGAC....................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
..........................................................................TTAGGTTCTCCCCTTGAATGTCTGACT...................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
.........................................................................................................................................................................TAATACTGACAGGTATACAA.............................................................. 20 3 20 0.05 1 0 0 1 0
.....................................................................................................................TTAGATTGTCGAAAGTCTTAACTTA............................................................................................................. 25 0 20 0.05 1 1 0 0 0
..............................................AGGAACTGAACTAAATGTG.......................................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0
.................................................................TTCAACTGGTTAGTTTCTCCCCTTGA................................................................................................................................................................ 26 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................TAACCTGTAACAATACTGC......................................................................... 19 3 20 0.05 1 0 1 0 0
..................AAGTTAAGCGCTCCCACACTAGAG................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
...............................................................................TTCTCCCCTTGAATGTCTGACTGGACT................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
........................................................................................................................GATTGTCGAAAGTCTTAACTTATA........................................................................................................... 24 0 20 0.05 1 1 0 0 0
..................................................................TCAACTGGTTAGGTTCTCCC..................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
...........................................................................................ATGTCTGACTGGACTCTCCAGC.......................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
.................................................................TTAAACTGGTTAGGTTCTCCCCTTGAA............................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0
..............................................................................GTTCTCCCCTTGAATGTCTGACTGGAC.................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0
.........................................................................GTTAGGTTCTCCCCTTGAATGTCT.......................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
................................................................................TCTCCCCTTGAATGTCTGACTGGACTC................................................................................................................................................ 27 0 20 0.05 1 0 1 0 0
..................AAGTTAAGCGCTCCCACACTAGAGTAC.............................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
..................................................................................TCCCCTTGAATGTCTGACTGGA................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0
..................................................ACTGAACTAAATCTGTTCAACTGG................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
...................................................................CAACTGGTTAGCTTCTCCCCTTG................................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0
...................................................................................CCCCTTGAATGTCTGACTGGACTCTC.............................................................................................................................................. 26 0 20 0.05 1 0 1 0 0
.................................................................TTCAACTGGTTAGGTTCTCCCCTTTT................................................................................................................................................................ 26 2 20 0.05 1 1 0 0 0
................................................................GTTCAACTGGTTAGGTTCTGCCCTT.................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0
......................................................................................CTTGAATGTCTGACTGGACTCTCCAGC.......................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
....................................................................................CCCTTGAATGTCTGACTGGACTCT............................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
............................................................................................TGTCTGACTGGACTCTCCAGCCT........................................................................................................................................ 23 0 20 0.05 1 0 1 0 0
..........................................................................TTAGGTTCTCCCCTTGAATGTCT.......................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1
.................................................................TTCAACTGGTTCGGTTCTCCCCTTGA................................................................................................................................................................ 26 1 20 0.05 1 1 0 0 0

Anti-sense strand reads

TATATATTCTTGTATATATTCAATTCGCGAGGGTGTGATCTCATGATACTTGACTTGATTTAGACAAGTTGACCAATCCAAGAGGGGAACTTACAGACTGACCTGAGAGGTCGGACGAATCTAACAGCTTTCAGAATTGAATATATTATTCTTGTCGGTATTGTACATTATTATGACTTTCTATATGTATAAACAAAAATCTTTTTAAGTTTCCCGATCTGCGTGGAAGATAAGGCGTACACGGATTTAAT
***********************************************************************************************************.......(((((((..((....((((..(((((((((((...))))).....))))))..)))).)).)))))))....***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V049
head
....................................................................................................ACCTGAGAGGTCGGACGAATCTAACAG............................................................................................................................ 27 0 1 1.00 1 1 0 0
..................................................TGACTTGATTTAGACAAGTTGACCAA............................................................................................................................................................................... 26 0 20 0.30 6 6 0 0
................................................CTTGACTTGATTTAGACAAGTTGACCA................................................................................................................................................................................ 27 0 8 0.25 2 2 0 0
...................................................GACTTGTTTTAGACAAGTTGACCAAT.............................................................................................................................................................................. 26 1 20 0.20 4 4 0 0
...................................TCATCTCACGATACCTGACT.................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1
................................................CTTGACTTGATTTAGACAAGTTGACCAAT.............................................................................................................................................................................. 29 0 8 0.13 1 0 1 0
..................................................TGACTTGTTTTAGACAAGTTGACCAAT.............................................................................................................................................................................. 27 1 20 0.10 2 2 0 0
........................................................GATTTAGACAAGTTGACCAAT.............................................................................................................................................................................. 21 0 20 0.10 2 1 1 0
......................ATTCGCGAGGGTGTGATCTCATGAT............................................................................................................................................................................................................ 25 0 20 0.10 2 2 0 0
.......................................................CGATTTAGACAAGTTGACCAAT.............................................................................................................................................................................. 22 1 20 0.05 1 0 1 0
......................................................CTGATTTAGACAAGTTGACCAATCCA........................................................................................................................................................................... 26 1 20 0.05 1 1 0 0
....................................................................................GGGAACTTACAGACTGACCTGAGAGGT............................................................................................................................................ 27 0 20 0.05 1 1 0 0
...................................................................................GGGGAACTTACAGACTGACGT................................................................................................................................................... 21 1 20 0.05 1 0 1 0
...................................................GACTTGATTTAGACAAGTTGACC................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0
.............................................................................CCAAGAGGGGAACTTACAGACTGGC..................................................................................................................................................... 25 1 20 0.05 1 0 1 0
.....................AATTCGCGAGGGTGTGATCTCATG.............................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0
.....................................................................................................................................GAATTGACTATATTAATC.................................................................................................... 18 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:1141001-1141251 + dmo_1339 ATATATAA-GAACATATATAAG--------TTA------AGCGCTCCC-------------------------------ACACT-----------------------------------------AGAGTACTATGAACTGAACTAAATCT----------GTTCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAATGTCTGACTG---------------GACTCTCCAGCCTGCTT----------AGATTGTCGAAAGTCTTAAC-TT--------------------------------------------------------------------------------------------ATATAATAAGAACAGCCATAACATGTAATAATACTGAAAGATATACATATTTGTTTTTAGAAAAATTCAAAGGGCT-------------------------------------------------------------------------------------------------------------------------------------------------AGACGCACCTTCTATTCCGCATGTGCCTAAATTA
droVir3 scaffold_12928:3222329-3222512 + ATATATAT-ATATATATATATA--------TAT-----A--TATGTAC-------------------------------CTACTACAGATGAATTTATATATTTATTTAACTCCCTCTGCACTTTGCTGGTTCGTACA---------ACATTTAATTAAATTTTGAAGCTGTA----------TTG-------------------------------------------CATTGGCCTTGAGCGGGTCTTTAATTGGGATAGAA---------------------------------------------------------------------------------------------------------------------TT---------------------------------------------------------------------------------ACATAAAATATAATAACATAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------AT
droGri2 scaffold_15074:2130557-2130652 - GCACATAG-AAACATATGCTGG--------CCA------AG-------------------------AATTTA---------------------------CTTTCATC------------------TG-------GGCA---------ACAT----------TTTCAAATGGCA----------GGG-------------------------------------------CTCTCTCTCTCTGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT---TTCTCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------TT
droWil2 scf2_1100000004511:3354257-3354482 + ATATATAT-ATATATATATACA--------TAA------CATGCATAT-----------------------ACATAATAATAATAATA--------------------------------------------------------------------------ATCAAGTAGCT----------AGA-------------------------------------------TTTTCTTATATAGTGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG---CGC-----------------------------------------------------------------------------------------AATGGAAAGGTCCAATGTTAGTTGCTTAGCATATACCTAAATATAAATTAATTAACTATAACAAAAGCAGCAACAAACCACAAAATAAAATATATATATATA-----TATATGTACATATATACATATGTATATCTAAAA-----AC---------------------AT
dp5 Unknown_group_10:16416-16483 - ATACATAT-GTATAGATAGCAG--------CAG------CT--------------------------------A------------AAGTC--------CG------------------CACCTTAGAGATCTATGGA---------T------------------------------------------------------------------------------CAA---------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------ATC-----------------------GG---------------------CT
droPer2 scaffold_1149:1009-1146 + ATATGTTT-GTATATATAGCCA--------TTT------AGC---------------------------------------------------------------------CCC----------------------------------C-----------------------------------------------------------------------------------------------------------------------------------ATTGTCTGACTAGAATCGCTGAAACGCCATTATCCACAATATT-TATAATATAA---------------------------------------------TAGT-----------------------------------------------------------------------AAAAAAAAAACAATAACAAGAAAAAAAATAGAGAGACACACAC------------------------------------------------------------------------------------------------------------------------------------------------------------ACT-----------------------CG---------------------TT
droAna3 scaffold_12578:5158-5290 - ATATATAT-ATATATATAATTA--------AAT-----ATCTTCTTCAAAAATAGTTT---GAAAAAATATA---------------------------TTTTTATT------------------TG-------AGTT---------CCGT----------TT---------------------------------------------------------------------------TTGATACAGTGT---------------------------------------------------------GATTTTTAAAACTGCT-----------------------------------------------------------------------------------------------------------TAGA---ATTTTTGG---AGT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------CAG-------------A---------------------------ACTAACTTA
droBip1 scf7180000394971:3310-3441 - ATATATAA-ATATATGTATATA--------TTT------TCAAATATG------------------AA-------------C--------------------TAATTTTACAATTCGTTTTTTCTGTT------CC---------------------------------------------------------------------------------------------------------------------------------------------TTAAGA------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATT-----------------------------------------------------------CTGGTTAAAGTTGTCATAAATTTCGATTTT------------TATGCTTTAAAAAGCTTTAAA-------------------------AA---------------------GT
droKik1 scf7180000302570:864844-864929 + ATATATAT-TATTATATTATTA--------TAN-----A--CTTTATA-------------------------------ATAATAATAAGTATA-----------------------------TTAAAAA--------TAGATTTAACCCT----------ATTAAAATAAAT----------AGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------CT
droFic1 scf7180000453197:13939-14017 + ATATATAT-ATTTATATATTAA--------TTA------CACTGTGCG-------------------------------ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTAA-----------------------------------------------------------CAA--------------------------------------------------------------------------AATCTTTGTTTAAGTAACTCT-----------------------------------------------------------------------TTTG---------------ATT-----------------------GT---------------------TT
droEle1 scf7180000488555:8991-9221 - ATATATAA-TGATATGAATGTT--------ATT------TATTATAGG------------------AATTCACAAAATCATATT-----------------------------------------AATATAATATGTTCTGAGAAATACCC----------ATATATTTGGTTGCCAGCCAACAGGCACTACCCTATATATGTTTTTGGACACCCCGTCTTTAAACTGC-----------------------------------------------------------------------------------------GTGTTT----------ACAGTACTAAAAGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCC-----------------------------------------------------------TTCATA----------TGAATTTCCTTCAT------------ATTAATATTATATGTTCTGAGAAATACCCATACATTT---------TG---------------------TT
droRho1 scf7180000778046:19016-19135 - ATATACAT-AAACATATACATA--------TGC---TA-ATT----------------TCATTGAAAACACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAATTTAAGTGTATCTATTCGGT-----------------------TCGTCCGACCCGATTCCAATACCCAGGGTTACCTACCTAT-----------------------------------------------------------------------ATTG---------------TCT-----------------------GA---------------------AG
droBia1 scf7180000302126:833670-833752 - AAATTTGA-ACTTATTATAATA--------AGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACAAAATACGTAATAAAGTAGAAACGTTTACGTGTACTT--TCTGAAACACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------------------AG
droTak1 scf7180000414173:28646-28748 + CCTGCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACAGGCGAAAGTCTTAAC-TTATATGTATGCAC---------GTTTTTCACAGTATTTAATAACAA----------------TTATTAATTTCAA---AATTT---TTCTCCGAT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------AACAA-----------------------AA---------------------TT
droEug1 scf7180000409277:857814-858003 + ATACACAA-ACACATATATATT--------TCA------ACA---GAAACAG-------------------AAA------------CAGAA--------AC------------------------AAAAG--------GCAAATCAACTAC----------ACAAAAGTAAAT----------AAG-----------------------------------AA--------------------------------------------------------GA---------------------------------------------------------------------------------------------------------------------AAATCTAACTAGTCAAAGCTTGAATATTTTTTA---ATTTA---TTCATTAATACAACAAGAACAACAAGAAAGCAAAACAAAAATGAAA-GTATACATATATAT-----------------------------------------------------------------------------------------------------------------------------------ATAA---------------AAC-----------------------AA---------------------AA
dm3 chr4:118612-118775 - ATATGTTA-TTATATATATATA--------TTA------TGCAATTGT---------------AAAGATTTAAAAAGCTAT------AAATGTA---TAAATGAAGTTTATTATTTTTCTTTTATGTG------ACCT---------TTAT----------TTATATTT----------------------------------------------------------------------------------------------------------------------AATTG---------------ATCATTTCT--------------------------------------------------------------------GGCTGCATTTAA------------------------ACTGAT----CTAA---GTTCTTAGCTTAGT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------AAG-------------------------AG---------------------AA
droSim2 4:81635-81749 - GTATATAT-ATATATATATATA--------TAT------ATC---GCAACAA-------------------CAT------------TTGGC--------AA----------------------------------------------------------------------------------------TACTGTAAATATTTTACTTAAAATAAGGTTTTTAAAATCC---------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------TAGT---TCTGCTCG---CAT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------ATG-------------T---------------------------CTTTACTCT
droSec2 scaffold_48:212494-212576 + ATATATTA-AAATGAAATTT-AAAAGCTGCATACACTA-TGT----------------AGATTAGAAATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGATATAAATAAATATGCAC------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----------------------TC---------------------GT
droYak3 v2_chrUn_004:691278-691482 - ATATATAATATATATATAAACG--------CAA-------ACGTGTCT-------------------------------CCATT-------------------------------AGTT---------------AGTT---------CAGT----------TC---------------------------------------------------------------------------TGAGTACGCTATCAATTGCGATAGCTTTGCTAAGCCCACTTCAACTTCGAAGTC---------------CATTATCCAACCTAGT-GATAATCCAA-----------AGGCTCTAGTTC-----------TTATTAGAAT-TAAT-----------------------------------------------------------------------AAAAAACGTTTAATAATACA---------TCAAAAATCAACGGTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----------------------TA---------------------AA
droEre2 scaffold_4512:805681-805741 + ATTAAAAG-ATTTTTATGTATC--------GGT-----G-------------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGAAAAATTTTTAGGTTT-------------------------------------------------------------------------------------------------------------------------------------------------GGATGCACCTC---------------------TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATATATAA-GAACATATATAAG--------TTA------AGCGCTCCC-------------------------------ACACT-----------------------------------------AGAGTACTATGAACTGAACTAAATCT----------GTTCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAATGTCTGACTG---------------GACTCTCCAGCCTGCTT----------AGATTGTCGAAAGTCTTAAC-TT--------------------------------------------------------------------------------------------ATATAATAAGAACAGCCATAACATGTAATAATACTGAAAGATATACATATTTGTTTTTAGAAAAATTCAAAGGGCT-------------------------------------------------------------------------------------------------------------------------------------------------AGACGCACCTTCTATTCCGCATGTGCCTAAATTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................TTCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................26203.30666600000
...................................................................................................................................................................TCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTG........................................................................................................................................................................................................................................................................................................................................................................................................................................24201.35272700000
...................................................................................T-----------------------------------------AGAGTACTATGAACTGAACTAAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................CAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................28200.55110000110
.....................................................................................................................................................................AACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................24200.50101000000
...................................................................................................................................................................TCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TT.........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.408800000
......................................................................................................................................................................................................................................................................................TGAATGTCTGACTG---------------GACTCTCCAGC..................................................................................................................................................................................................................................................................................................................................................................................................25200.357700000
.....................................................................................................................................................................AACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTG........................................................................................................................................................................................................................................................................................................................................................................................................................................22200.306600000
....................................................................................................................................................................CAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................27200.306000060
...............................................................................................................................................................................................................................................................................................................................TGCTT----------AGATTGTCGAAAGTCTTAAC-C............................................................................................................................................................................................................................................................................................................................................................2640.251100000
......................................................................................................................................TGAACTGAACTAAATCT----------GTTCAACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.222200000
....................................................................................................................................................................CAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................28200.204000040
.................................................................................................................................................................GTTCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTG........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153300000
...................................................................................................................................................................TCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................27200.153000030
..................................................................................................................................................................................................................................................................................................................................TT----------AGATTGTCGAAAGTCTTAAC-TT--------------------------------------------------------------------------------------------ATA............................................................................................................................................................................................................................................................27200.153000030
.....................................................................................................................................................................................................................................................................................TTGAATGTCTGACTG---------------GACTCTCCAGCC.................................................................................................................................................................................................................................................................................................................................................................................................27200.153000030
.....................................................................................................................................................................AACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TT.........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153300000
.........................................................................................................................................................................................................................................CCCC----------------------------------------TTGAATGTCTGACTG---------------GACTCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................27200.153000030
.......................................................................................................................................................................................................................................................................................GAATGTCTGACTG---------------GACTCTCCAGCC.................................................................................................................................................................................................................................................................................................................................................................................................25200.153200010
......................................................................................................................................................T----------GTTCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153300000
........................................................................................................................................................................................................................................TCCCC----------------------------------------TTGAATGTCTGACTG---------------GACTCT.......................................................................................................................................................................................................................................................................................................................................................................................................26200.153000030
....................................................................................................................................................................CAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000030
......................................................................................................................................TGAACTGAACTAAATCT----------GTTCAACTGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2880.131100000
....................................................................................................................................................................CAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
...................................................................................................................................................................TCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
...................................................................................................................................................ATCT----------GTTCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
..................................................................................................................................................................TTCAACTGGTT----------AGG-------------------------------------------TTCTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
......................................................................................................................................................................ACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102200000
....................................................................................................................................TATGAACTGAACTAAATCT----------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.081100000
.....................................................................................................................................ATGAACTGAACTAAATCT----------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.081100000
.....................................................................................................................................ATGAACTGAACTAAATCT----------GTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.081100000
...........................................................................................................................................................................................................................................CC----------------------------------------TTGAATGTCTGACTG---------------GACTCTC......................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
........................................................................................................................................................................................................................................................................................AATGTCTGACTG---------------GACTCTCCAGC..................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
...........................................................................................................................................................................TT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAATGTCTGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...........................................................................................................................................................................TT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAATGTCTGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
..................................................................................................................................................................................................................................................................................................................................TT----------AGATTGTCGAAAGTCTTAAC-TT--------------------------------------------------------------------------------------------A..............................................................................................................................................................................................................................................................25200.051100000
...................AAG--------TTA------AGCGCTCCC-------------------------------ACACT-----------------------------------------AGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.....................................................................................................................................................................................................................................TTCTCCCC----------------------------------------TTGAATGTCTGACTG---------------GACT.........................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...............................................................................................................................................................................................................................................................................................................................................GATTGTCGAAAGTCTTAAC-TT--------------------------------------------------------------------------------------------ATA............................................................................................................................................................................................................................................................24200.051100000
...................................................................................................................................................................TCAACTGGTT----------AGG-------------------------------------------TTCTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.........................................................................................................................................................................................................................................................................................ATGTCTGACTG---------------GACTCTCCAGC..................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.........................................................................................................................................................................................G-------------------------------------------TTCTCCCC----------------------------------------TTGAATGTCTGACTG---------------GAC..........................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
..........................................................................................................................................................................GTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAATGTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
......................................................................................................................................................................................................................................TCTCCCC----------------------------------------TTGAATGTCTGACTG---------------GACTC........................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
...................AAG--------TTA------AGCGCTCCC-------------------------------ACACT-----------------------------------------AGAGTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
........................................................................................................................................................................................................................................TCCCC----------------------------------------TTGAATGTCTGACTG---------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
.........................................................................................................................................ACTGAACTAAATCT----------GTTCAACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.........................................................................................................................................................................................................................................CCCC----------------------------------------TTGAATGTCTGACTG---------------GACTCTC......................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
..................................................................................................................................................................TTCAACTGGTT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
............................................................................................................................................................................................................................................C----------------------------------------TTGAATGTCTGACTG---------------GACTCTCCAGC..................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
..........................................................................................................................................................................................................................................CCC----------------------------------------TTGAATGTCTGACTG---------------GACTCT.......................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
..........................................................................................................................................................................................................................................................................................TGTCTGACTG---------------GACTCTCCAGCCT................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
...........................................................................................................................................................................TT----------AGG-------------------------------------------TTCTCCCC----------------------------------------TTGAATGTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
droVir3
ATATATAT-ATATATATATATA--------TAT-----A--TATGTAC-------------------------------CTACTACAGATGAATTTATATATTTATTTAACTCCCTCTGCACTTTGCTGGTTCGTACA---------ACATTTAATTAAATTTTGAAGCTGTA----------TTG-------------------------------------------CATTGGCCTTGAGCGGGTCTTTAATTGGGATAGAA---------------------------------------------------------------------------------------------------------------------TT---------------------------------------------------------------------------------ACATAAAATATAATAACATAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------ATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................TTATTTAACTCCCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.001000000000000000000000000000000000000000000000001000000000000000
droGri2
GCACATAG-AAACATATGCTGG--------CCA------AG-------------------------AATTTA---------------------------CTTTCATC------------------TG-------GGCA---------ACAT----------TTTCAAATGGCA----------GGG-------------------------------------------CTCTCTCTCTCTGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT---TTCTCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------TTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATATATAT-ATATATATATACA--------TAA------CATGCATAT-----------------------ACATAATAATAATAATA--------------------------------------------------------------------------ATCAAGTAGCT----------AGA-------------------------------------------TTTTCTTATATAGTGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG---CGC-----------------------------------------------------------------------------------------AATGGAAAGGTCCAATGTTAGTTGCTTAGCATATACCTAAATATAAATTAATTAACTATAACAAAAGCAGCAACAAACCACAAAATAAAATATATATATATA-----TATATGTACATATATACATATGTATATCTAAAA-----AC---------------------ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
ATACATAT-GTATAGATAGCAG--------CAG------CT--------------------------------A------------AAGTC--------CG------------------CACCTTAGAGATCTATGGA---------T------------------------------------------------------------------------------CAA---------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------ATC-----------------------GG---------------------CTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATATGTTT-GTATATATAGCCA--------TTT------AGC---------------------------------------------------------------------CCC----------------------------------C-----------------------------------------------------------------------------------------------------------------------------------ATTGTCTGACTAGAATCGCTGAAACGCCATTATCCACAATATT-TATAATATAA---------------------------------------------TAGT-----------------------------------------------------------------------AAAAAAAAAACAATAACAAGAAAAAAAATAGAGAGACACACAC------------------------------------------------------------------------------------------------------------------------------------------------------------ACT-----------------------CG---------------------TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................TAGAATCGCTGAAACGCCATTATCCA....................................................................................................................................................................................................................................................................................................................................................................................................26103.80380380000
..................................................................................................................................................................................................................................................................................................TAGAATCGCTGAAACGCCATTATCC.....................................................................................................................................................................................................................................................................................................................................................................................................25101.30130130000
..................................................................................................................................................................................................................................................................................................TAGAATCGCTGAAACGCCATTATC......................................................................................................................................................................................................................................................................................................................................................................................................24100.404040000
...................................................................................................................................................................................................................................................................................................AGAATCGCTGAAACGCCATTATCCA....................................................................................................................................................................................................................................................................................................................................................................................................25100.303030000
...................................................................................................................................................................................................................................................................................................AGAATCGCTGAAACGCCATTATCCACAA.................................................................................................................................................................................................................................................................................................................................................................................................28100.101010000
..................................................................................................................................................................................................................................................................................................TAGAATCGCTGAAACGCCATTATCCAC...................................................................................................................................................................................................................................................................................................................................................................................................27100.101010000
..................................................................................................................................................................................................................................................................................................TAGAATCGCTGAAACGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................20100.101010000
..................................................................................................................................................................................................................................................................................................TAGAATCGCTGAAACGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................19100.101010000
droAna3
ATATATAT-ATATATATAATTA--------AAT-----ATCTTCTTCAAAAATAGTTT---GAAAAAATATA---------------------------TTTTTATT------------------TG-------AGTT---------CCGT----------TT---------------------------------------------------------------------------TTGATACAGTGT---------------------------------------------------------GATTTTTAAAACTGCT-----------------------------------------------------------------------------------------------------------TAGA---ATTTTTGG---AGT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------CAG-------------A---------------------------ACTAACTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................TGCT-----------------------------------------------------------------------------------------------------------TAGA---ATTTTTGG---AGT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------CAG-------------A---------------------------AC.......27200.204400000
....................................................................TATA---------------------------TTTTTATT------------------TG-------AGTT---------CCGT----------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.153021000
.....................................................................ATA---------------------------TTTTTATT------------------TG-------AGTT---------CCGT----------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102200000
...............................................................................................................................................................................................................................................................................................................................TGCT-----------------------------------------------------------------------------------------------------------TAGA---ATTTTTGG---AGT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------CAG-------------A---------------------------ACT......28200.102020000
...............................................................................................................................................................................................................................................TGATACAGTGT---------------------------------------------------------GATTTTTAAAACTGCT-----------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................27200.102110000
..........................................................................................................T------------------TG-------AGTT---------CCGT----------TT---------------------------------------------------------------------------TTGATACAGTGT---------------------------------------------------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
...............................................................................................................................................................................................................................................TGATACAGTGT---------------------------------------------------------GATTTTTAAAACTGC..............................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.................................................................................................................................................................................................................................................................................................................................CT-----------------------------------------------------------------------------------------------------------TAGA---ATTTTTGG---AGT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------CAG-------------A---------------------------ACT......26200.051100000
.............................................................................................................................TG-------AGTT---------CCGT----------TT---------------------------------------------------------------------------TTGATACAGTGT---------------------------------------------------------GAT..........................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGA---ATTTTTGG---AGT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------CAG-------------A---------------------------ACC......24200.051010000
.........................................................................................................................................T---------CCGT----------TT---------------------------------------------------------------------------TTGATACAGTGT---------------------------------------------------------GATT.........................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
droBip1
ATATATAA-ATATATGTATATA--------TTT------TCAAATATG------------------AA-------------C--------------------TAATTTTACAATTCGTTTTTTCTGTT------CC---------------------------------------------------------------------------------------------------------------------------------------------TTAAGA------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATT-----------------------------------------------------------CTGGTTAAAGTTGTCATAAATTTCGATTTT------------TATGCTTTAAAAAGCTTTAAA-------------------------AA---------------------GTSizeHit CountTotal NormTotal
No Reads
droKik1
ATATATAT-TATTATATTATTA--------TAN-----A--CTTTATA-------------------------------ATAATAATAAGTATA-----------------------------TTAAAAA--------TAGATTTAACCCT----------ATTAAAATAAAT----------AGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------CTSizeHit CountTotal NormTotal
No Reads
droFic1
ATATATAT-ATTTATATATTAA--------TTA------CACTGTGCG-------------------------------ACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTAA-----------------------------------------------------------CAA--------------------------------------------------------------------------AATCTTTGTTTAAGTAACTCT-----------------------------------------------------------------------TTTG---------------ATT-----------------------GT---------------------TTSizeHit CountTotal NormTotal
No Reads
droEle1
ATATATAA-TGATATGAATGTT--------ATT------TATTATAGG------------------AATTCACAAAATCATATT-----------------------------------------AATATAATATGTTCTGAGAAATACCC----------ATATATTTGGTTGCCAGCCAACAGGCACTACCCTATATATGTTTTTGGACACCCCGTCTTTAAACTGC-----------------------------------------------------------------------------------------GTGTTT----------ACAGTACTAAAAGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCC-----------------------------------------------------------TTCATA----------TGAATTTCCTTCAT------------ATTAATATTATATGTTCTGAGAAATACCCATACATTT---------TG---------------------TTSizeHit CountTotal NormTotal
No Reads
droRho1
ATATACAT-AAACATATACATA--------TGC---TA-ATT----------------TCATTGAAAACACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAATTTAAGTGTATCTATTCGGT-----------------------TCGTCCGACCCGATTCCAATACCCAGGGTTACCTACCTAT-----------------------------------------------------------------------ATTG---------------TCT-----------------------GA---------------------AGSizeHit CountTotal NormTotal
No Reads
droBia1
AAATTTGA-ACTTATTATAATA--------AGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACAAAATACGTAATAAAGTAGAAACGTTTACGTGTACTT--TCTGAAACACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---------------------AGSizeHit CountTotal NormTotal
No Reads
droTak1
CCTGCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACAGGCGAAAGTCTTAAC-TTATATGTATGCAC---------GTTTTTCACAGTATTTAATAACAA----------------TTATTAATTTCAA---AATTT---TTCTCCGAT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------AACAA-----------------------AA---------------------TTSizeHit CountTotal NormTotal
No Reads
droEug1
ATACACAA-ACACATATATATT--------TCA------ACA---GAAACAG-------------------AAA------------CAGAA--------AC------------------------AAAAG--------GCAAATCAACTAC----------ACAAAAGTAAAT----------AAG-----------------------------------AA--------------------------------------------------------GA---------------------------------------------------------------------------------------------------------------------AAATCTAACTAGTCAAAGCTTGAATATTTTTTA---ATTTA---TTCATTAATACAACAAGAACAACAAGAAAGCAAAACAAAAATGAAA-GTATACATATATAT-----------------------------------------------------------------------------------------------------------------------------------ATAA---------------AAC-----------------------AA---------------------AASizeHit CountTotal NormTotal
No Reads
dm3
ATATGTTA-TTATATATATATA--------TTA------TGCAATTGT---------------AAAGATTTAAAAAGCTAT------AAATGTA---TAAATGAAGTTTATTATTTTTCTTTTATGTG------ACCT---------TTAT----------TTATATTT----------------------------------------------------------------------------------------------------------------------AATTG---------------ATCATTTCT--------------------------------------------------------------------GGCTGCATTTAA------------------------ACTGAT----CTAA---GTTCTTAGCTTAGT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------AAG-------------------------AG---------------------AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
GTATATAT-ATATATATATATA--------TAT------ATC---GCAACAA-------------------CAT------------TTGGC--------AA----------------------------------------------------------------------------------------TACTGTAAATATTTTACTTAAAATAAGGTTTTTAAAATCC---------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------TAGT---TCTGCTCG---CAT------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------ATG-------------T---------------------------CTTTACTCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ATATATTA-AAATGAAATTT-AAAAGCTGCATACACTA-TGT----------------AGATTAGAAATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGATATAAATAAATATGCAC------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-----------------------TC---------------------GTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATATATAATATATATATAAACG--------CAA-------ACGTGTCT-------------------------------CCATT-------------------------------AGTT---------------AGTT---------CAGT----------TC---------------------------------------------------------------------------TGAGTACGCTATCAATTGCGATAGCTTTGCTAAGCCCACTTCAACTTCGAAGTC---------------CATTATCCAACCTAGT-GATAATCCAA-----------AGGCTCTAGTTC-----------TTATTAGAAT-TAAT-----------------------------------------------------------------------AAAAAACGTTTAATAATACA---------TCAAAAATCAACGGTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----------------------TA---------------------AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................TCAACTTCGAAGTC---------------CATTATCCAACC.................................................................................................................................................................................................................................................................................................................................................................................................2661.00603300000000
.....................................................................................................................................................................................................................................................................................TTCAACTTCGAAGTC---------------CATTATCCAACC.................................................................................................................................................................................................................................................................................................................................................................................................2760.50301200000000
................................................................................................................................................................................................................................................................................CCCACTTCAACTTCGAAGTC---------------CATTATCC.....................................................................................................................................................................................................................................................................................................................................................................................................2860.17101000000000
......................................................................................................................................................................................................................................................................................................................TATCCAACCTAGT-GATAATCCAA-----------AGGC...................................................................................................................................................................................................................................................................................................................................................................2770.14100100000000
.......................................................................................................................................................................................................................................................................................................................ATCCAACCTAGT-GATAATCCAA-----------AG.....................................................................................................................................................................................................................................................................................................................................................................2480.13101000000000
...........................................................................................................................................................................................................................................................................................TTCGAAGTC---------------CATTATCCAACCTAGT-GA..........................................................................................................................................................................................................................................................................................................................................................................................2780.13101000000000
.........................................................................................................................................................................................................................................................TCAATTGCGATAGCTTTGCTAAGCCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................27120.08101000000000
.........................................................................................................................................T---------CAGT----------TC---------------------------------------------------------------------------TGAGTACGCTATCAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.05101000000000
........................................................................................................................................TT---------CAGT----------TC---------------------------------------------------------------------------TGAGTACGCTATCAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................25190.05101000000000
.........................................................................................................................................T---------CAGT----------TC---------------------------------------------------------------------------TGAGTACGCTATCAATTGCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................28190.05101000000000
.........................................................................................................................................T---------CAGT----------TC---------------------------------------------------------------------------TGAGTACGCTATCAATTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................26190.05101000000000
................................................................................................................................................................................................................................................................................................................................AGT-GATAATCCAA-----------AGGCTCTAG..............................................................................................................................................................................................................................................................................................................................................................22200.05100000010000
......................................................................................................................................AGTT---------CAGT----------TC---------------------------------------------------------------------------TGAGTACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
droEre2
ATTAAAAG-ATTTTTATGTATC--------GGT-----G-------------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGAAAAATTTTTAGGTTT-------------------------------------------------------------------------------------------------------------------------------------------------GGATGCACCTC---------------------TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............TTTATGTATC--------GGT-----G-------------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGAAA................................................................................................................................................................................................2411.0010000100

Generated: 05/18/2015 at 12:16 AM