ID:

dmo_1338

 Coordinate:

scaffold_6498:1138977-1139127 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.9 -2.8 -2.7

Flybase annnotation

CDS [Dmoj\GI14094-cds]; exon [dmoj_GLEANR_14174:2]; intron [Dmoj\GI14094-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-
mature
  1. scaffold_312:924-949 -
  2. scaffold_1788:3943-3968 -
  3. scaffold_1846:963-988 -
  4. scaffold_3987:6303-6328 -
  5. scaffold_4134:3028-3053 -
  6. scaffold_4344:222-247 -
  7. scaffold_4703:387-412 -
  8. scaffold_6428:32106-32131 -
  9. scaffold_6448:41380-41405 -
  10. scaffold_6496:26563652-26563677 -
  11. scaffold_6496:26637314-26637339 -
  12. scaffold_6498:2498987-2499012 -
  13. scaffold_6498:2712160-2712185 -
  14. scaffold_6500:9493214-9493239 -
  15. scaffold_6500:21539229-21539254 -
  16. scaffold_6500:30992452-30992477 -
  17. scaffold_6541:969359-969384 -
  18. scaffold_6680:15525489-15525514 -
  19. scaffold_6680:21129909-21129934 -
  20. scaffold_6680:24412552-24412577 -
  21. scaffold_3097:62406-62431 +
  22. scaffold_3097:90447-90472 +
  23. scaffold_3282:1254-1279 +
  24. scaffold_3655:643-668 +
  25. scaffold_3713:891-916 +
  26. scaffold_4830:3445-3470 +
  27. scaffold_5069:747-772 +
  28. scaffold_6265:3802-3827 +
  29. scaffold_6473:12974670-12974695 +
  30. scaffold_6474:88592-88617 +
  31. scaffold_6496:5643130-5643155 +
  32. scaffold_6496:16952668-16952693 +
  33. scaffold_6496:25652887-25652912 +
  34. dmo_1338  scaffold_6498:1139102-1139127 +
  35. scaffold_6498:2644852-2644877 +
  36. scaffold_6500:4687370-4687395 +
  37. scaffold_6500:9978297-9978322 +
  38. scaffold_6500:30690380-30690405 +
  39. scaffold_6500:30779844-30779869 +
  40. scaffold_6540:5779972-5779997 +
star
  1. scaffold_163:528-554 +
  2. scaffold_2803:6269-6295 +
  3. scaffold_3149:1055-1081 +
  4. scaffold_3153:630-656 +
  5. scaffold_3970:1466-1492 +
  6. scaffold_6278:3254-3280 +
  7. scaffold_6315:46611-46637 +
  8. scaffold_6428:106225-106251 +
  9. scaffold_6473:1280186-1280212 +
  10. dmo_1338  scaffold_6498:1139052-1139078 +
  11. scaffold_6500:12423419-12423445 +
  12. scaffold_6540:14754581-14754607 +
  13. scaffold_6540:22214564-22214590 +
  14. scaffold_6541:104062-104088 +
  15. scaffold_6541:1171150-1171176 +
  16. scaffold_6623:3297-3323 +
  17. scaffold_6654:1074584-1074610 +
  18. scaffold_6680:21033817-21033843 +
  19. scaffold_6680:22902490-22902516 +
  20. scaffold_6680:23033157-23033183 +
  21. scaffold_20:1891-1917 +
  22. scaffold_3653:706-732 +
  23. scaffold_4269:695-721 +
  24. scaffold_6314:8125-8151 +
  25. scaffold_6473:12979853-12979879 +
  26. scaffold_6482:311603-311629 +
  27. scaffold_6482:1087737-1087763 +
  28. scaffold_6496:1326773-1326799 +
  29. scaffold_6498:2206770-2206796 +
  30. scaffold_6500:9978247-9978273 +
  31. scaffold_6500:10922927-10922953 +
  32. scaffold_6500:21763262-21763288 +
  33. scaffold_6501:121069-121095 +
  34. scaffold_6540:6240813-6240839 +
  35. scaffold_6540:10472732-10472758 +
  36. scaffold_6540:30783783-30783809 +
  37. scaffold_6540:30785585-30785611 +
  38. scaffold_6541:906217-906243 +
  39. scaffold_6541:1592325-1592351 +
  40. scaffold_6680:13929228-13929254 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCGGCAATTGAGGGCAAATTACCAGAAGCTTACGTACCAGACATTATTGGTGAGTACCCAGACAATTATTAATAAGCAACAATAACAAGTAAGAAAGCTCTAGTCGAGACTGCTCGACTACGAGATCCCCTGAACCCTTGGAGCAATAGATATTTCAATACTTTTTCGCGACTTTCAGCTTACACAAGAAACACACACACACACACACACGCACGTACGCACACACAGGCATACATACACACACACGCAT
*****************************************************************************************************************************.....(((((...((((((....((.(((....)))))..))).)))..)))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V049
head
 V041
embryo
 V110
male body
................AAATTACCAGAAGCTTACGTACCAGA................................................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0
...............................................................................................................................................................................TCAGCTTACACAAGAAACACACACAC.................................................. 26 0 20 0.90 18 0 18 0 0 0
................................................................AATTATTAATAAGGAACA......................................................................................................................................................................... 18 1 3 0.33 1 0 0 1 0 0
.............................................................................................................................ATCCCCTGAACCCTTGGAGCAATAGAT................................................................................................... 27 0 20 0.30 6 6 0 0 0 0
............................................................................................AGAAAGCTCTAGTCGAGACTG.......................................................................................................................................... 21 0 20 0.25 5 5 0 0 0 0
..............................................................................................................................TCCCCTGAACCCTTGGAGCAATA...................................................................................................... 23 0 20 0.20 4 4 0 0 0 0
....................................................................................................................GACTACGAGATCCCCTGAACCCTTG.............................................................................................................. 25 0 20 0.15 3 0 3 0 0 0
....................................................................................................................GACTACGAGATCCCCTGAACCCT................................................................................................................ 23 0 20 0.10 2 2 0 0 0 0
....................................................................................................................................................................................TTACACAAGAAACACACACACAC................................................ 23 0 20 0.10 2 2 0 0 0 0
....................................................................................................CTAGTCGAGACTGCTCGACTACG................................................................................................................................ 23 0 20 0.10 2 2 0 0 0 0
................................................................................................................................................................................CAGCTTACACAAGAAACACACACACA................................................. 26 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................................TGGAGCAATAGATATTTCAATACTTT...................................................................................... 26 0 20 0.05 1 0 0 0 0 1
.....................................................................................................................................AACCCTTGGAGCAATAGATATTTCAA............................................................................................ 26 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................TCAGCTTACACAAGAAACACACACA................................................... 25 0 20 0.05 1 0 1 0 0 0
...............................................................................................................................................................................TCAGCTTACACCAGAAACACACACA................................................... 25 1 20 0.05 1 1 0 0 0 0
..................................................................................ATAACAAGTAAGAAAGCTC...................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................AGCTTACACAAGAAACACACACAC.................................................. 24 0 20 0.05 1 0 1 0 0 0
...............................................................................................AAGCTCTAGTCGAGACTGCTCGA..................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................TTACACAAGAAACACACACACA................................................. 22 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................TCAGCTTACACAAGAAACACACACACA................................................. 27 0 20 0.05 1 0 1 0 0 0
...............................................................................................................................................................................TCAGCTTACACAAGAAACACACAC.................................................... 24 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................TAGATATTTCAATACTTTTCCGCGACT............................................................................. 27 1 20 0.05 1 0 1 0 0 0
...............................................................................................................................................................................................................................ACACAGGCATACATACACACACACG... 25 0 20 0.05 1 0 0 0 1 0
...............................................................................................................................................................................TCAGCTTACACGAGAAACACACACAC.................................................. 26 1 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................CGCACGTACGCACACACAGGCATACAT.............. 27 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................TTGTAGCAATAGATATTTCAATACTTT...................................................................................... 27 1 20 0.05 1 0 1 0 0 0
........................................................................................................................................CCTTGGAGCAATAGATATTTCAATAC......................................................................................... 26 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................TGAACCCTTGGAGCAATAGATATT................................................................................................ 24 0 20 0.05 1 0 1 0 0 0
....................................................................................................CTAGTCGAGACTGCTCGACTACGAGATC........................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CGGCCGTTAACTCCCGTTTAATGGTCTTCGAATGCATGGTCTGTAATAACCACTCATGGGTCTGTTAATAATTATTCGTTGTTATTGTTCATTCTTTCGAGATCAGCTCTGACGAGCTGATGCTCTAGGGGACTTGGGAACCTCGTTATCTATAAAGTTATGAAAAAGCGCTGAAAGTCGAATGTGTTCTTTGTGTGTGTGTGTGTGTGTGCGTGCATGCGTGTGTGTCCGTATGTATGTGTGTGTGCGTA
**************************************************.....(((((...((((((....((.(((....)))))..))).)))..)))))......................***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
................................................................................................................................................................................................................GTGCGTGCATGCGTGTGTGT....................... 20 0 20 0.10 2 2 0 0
..........................................................................................................................CTCTAGGGGACTTGGGAACCTCGT......................................................................................................... 24 0 20 0.05 1 0 1 0
...........................................................................................................................................................................TGAAAGTCGAATGTGTTCTTTGTG........................................................ 24 0 20 0.05 1 0 0 1
......................................................................................................................................TGGGAACCTCGTTATCTATAATGTT............................................................................................ 25 1 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:1138927-1139177 + dmo_1338 GCCGGCAATTGAGGGCAAATTACCAGAAGCTTACGTACCAGACATTATTGG------------------TGAGTAC-CCAGAC--AATTA---T--T-AATA----------------------------------------------------------------------AGCAACAATAACAAGTAAGAAAGCTCTAGTCGAGA--CT---GCTCGACTACGAGATCCCCTGAACCCTTGGAGCAATAGATATTTCAATAC---------------------TTTTTCGCGACTTTCAGCTTACAC------------------------------------------------------------------------AAGA--------AA-----------------CA--CAC-ACACACACACACACGCACGTACGCACACACAG-GCATACATACACACACACGCAT-
droVir3 scaffold_12928:3256729-3256910 + AATAAAAA------A-----------------------------C-----------------------------A--ATAATC----CAATAATAAT-GCCCAAGCATTTGCTTTGTAAC---------AAGTAGATTTATTTTCATGAATTCTAAA---------------------------AAAAAAAAA----ACAATTAA----------------------------------------------------------------------------------------------------------------TTCCCTTTCTT-----------------------------------------------------A--C----TGCACA----CACACA----C-ACACACAC-ACACACACACACACACACACACACACACACAC-ATACACACACACACATACACAC-
droGri2 scaffold_15252:15863816-15864037 - AGCTGCGG------GCAAAAC-------------------------ATTAGTACATTCATATATTTTGGAAATAAC-TTAAAA--TATAG---T--T-AATA-------------------------------------------------------------------------------AACAAGTAAGAGTGCTGTAGTCGAGT--GA---GCTCGATTACGATATACCTTGAACCCCG------------------------TTAAATA--------------------------------------------------------------TATGCAAATATATATTGG-----------AATATTTCC--AT----TTAAAAT-------------------------ATTTACACTAAACGCACT-AAGCCGGCCTGCAAGCGCGCTCTGCCGATAAACACGTGAATAT-
droWil2 scf2_1100000004511:3698987-3699158 + ATAATTTT------T-----------------------------C-----G------------------CCAACAC-CAAAAA--CATAA---T--T-AAAAAGCTAATTGA-AATTGTT----------------------------------------------------------------AAGCATAAAAT-----------------------------------------------------------------------CCAATTAGTGTGAAATAAA----------------------TTTA------------------------TTTAAACTGGTT--------------------------------------AGCTAA--------CAAACT----C---ACTAACATAAAATAAACAAACTAACTAACACACACACAC-ACACACACACACACACACACAC-
dp5 XR_group6:12953152-12953259 + AACTGTAA------A-----------------------------C-----------------------------AC-------------------------AT-------------------------------------------------------------------------------ACATATGT-------------------------------------------------------------------------------ATGCA------------CTGCTT---------GCAGGCACAC---------------------------ATCCAA-------------------------------------------------AG-----------------C----AC-ACACACACACACACACACACACACACACACAC-ACACACACACACACACACACAC-
droPer2 scaffold_4:4703594-4703771 - ACATC-----------------------------------------ATCAG------------------CAGATAC-ATAGAT--CGTAA---T--A-GAT--------------------------------------------------CGTAAGGAAAAACAAAACAAAAACAACAAGAATAGAGCACAACAATGGACTACGGGGCCTACGCTC--------------------------------TGAATGTTTGAATAT---------------------TTT-------------------------------------------------------------GT-------------CTCATTTTGGGTCACAGCAGC----AA------------------------------CACA------------------CACACACAC-ACACACACACACACACACACACA
droAna3 scaffold_13335:1859885-1859994 + TGCAGCAA------G-----------------------------A-----------------------------GTTCAATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGATACACTT---------------------CACACAGATACAAAA--------------------------------------------------------------------------------AG-----------------CACACAC-CTACGCAAACACGCGCCCCTACGCACACACAT-ACACCCCTACCTGAGCACACAC-
droBip1 scf7180000395529:145549-145658 - TGCAGCAA------G-----------------------------A-----------------------------GTTCAATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGATATACTT---------------------CACACAGATACAAAA--------------------------------------------------------------------------------AG-----------------CACACAC-CTACGCAAACACGCGCCCCTACGCACACACAT-ACACCCCAACTCGCACACACAC-
droKik1 scf7180000302398:414017-414128 - AAGCA----------------------------------------------------------------------T-TGAAAA---------------CATTG----------------------------------------------------------------------------ATAACAAA-------------------------------------------------------------ACA-------------------TAT------------TTT-------------------------------------------------------------AC-------------CTTTAATGCGTA---------------------------CA----C---ATACACAACACACACACACACACACACACACACACACAC-ACACACACACACACACACACAC-
droFic1 scf7180000453912:1821003-1821111 + AGCAGCAA------A-----------------------------T-----------------------------GC----------------------------------------------------------------------------------------------------------------CAAAAGA-----------------------------------------------------------------------CCGTTTCGCATGGCCCAGA----------------------GCTTTA------------------------GGCGCAA-------------------------------------------------AT-----------------C----AA-CCACCCAACC--ACCCTCATACACACACTCAC-ACACACAAACACACACACACACT
droEle1 scf7180000490141:255343-255467 + TCCGCCGA------A-----------------------------C-------------------------------TTGGAGC---------------CATAG-------------------------------------------------------------------------------ACACATAAACGTG-------------------------------------------------------------------------------------------CTGCTG----------------TCAAC--------------------------------------------------------------------------------CGCACACGCACATGCC-GACACACCC-ACACACGCACACACACACACCCGCACACCCGC-ACACACACACACACGCCCACAT-
droRho1 scf7180000771902:259-394 - AACTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGAAAGAACGCTATAGTCGAGT---G---CCTCGACTATTAGATACCCGTTACTCAG------------------------CTAAACAATTGC----------------------------------------------------------------------------------------AAC----------------------------------------T---GTGTAC--AATGTAAATACATACATACATATGTATATGC-TTACATACATACACACATACGC-
droBia1 scf7180000299898:36646-36763 + GAGACCTC------G-----------------------------A-----------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACG-------------------TATTTTT---------------------CAGACGGGTTCGAAC-CCTCCCCCCCCCCC-----------------------------------------------------A--C----C---------------------ACACACAC-ACACACACACACACACACACACACACACACAC-ACACACACACACACACACACAC-
droTak1 scf7180000412666:10955-11159 + TAGTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATAAGAACAAGAGAAAACGCTATAGTCGGGT--TTGTGCCCCGACTATCTAATACCCGTTACTCTG------------------------CTAAAG------------------------------------------GCAGTGCGAGGGAGATGGATATATACAATTTTTTGATTGCGTATAACTTTTTAATTTC-------------------------------GA----C-AGACAGAC-AGACAGACAGACAGACAGACAGACAGACAGAC-AGACAGACAGACAGACAGACAG-
droEug1 scf7180000409040:52234-52370 + CTTCAAGA------T-----------------------------C-------------------------------TCC----------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTTT------------------------TCTCTATATATAG---------------------CATACATATT-----------GGCGCTCTG-----------------------------------------------------G--C----CATACACGCACACACACACA-CACAGATAT-ACACACACATGCATGCAAACAAACACACTTAG-ACGCATTTTCCCACACACACAC-
dm3 chrX:4593524-4593618 + TTT--------------------------------------------------------------------------CAATCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACACACACACACACACACACACACACACACAC-ACACACACACACACACAAACAC-
droSim2 x:4889154-4889272 - GAAGCGTT------G----------------------------------------------------------------GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATGGATATTCGGGTTC---------------------ATTGCTTTGACATTGATGAGACAG------------------------------------------------------------------------GACA--------AG-----------------GC--TAG-ACACACACACACACACACACAGACACACACAC-ACACACAGACACACACACACAC-
droSec2 scaffold_8:3022566-3022695 + CAGGCCAT------A-----------------------------A------------------------------------------------T--T-GCTTGGCAAGTTAATAAGTGGC----------------------------------------------------------------AAGTCAAAAAG-----------------------------------------------------------------------CTTATCCCCTGGACCCAGA----------------------ACCC------------------------CTCGCACTTATTTCTT-------------CCCATTTCC--CC----AAAGAACCAC--------------------------------------------------------CACAC-ACAC-CACAC-GCCACACGCAC-
droYak3 v2_chrUn_5959:584-709 - GTAATTAT------A-----------------------------A-----------------------------A---------------------TAAGTTAGC--ATTAGAGAATGACCGAAATAATATGGTGGTTTAT-------------ACACAAGCAATGGCAA-CCACAATAAAAACAAGTGAGAACGCTATAGTCGAGT---T---CCTCGACTATCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATACCC-
droEre2 scaffold_4690:8361460-8361648 - TACAAGAC------A-----------------------------ATATTT---TT--------------------C-CC---------------------------------------------------------------------------AAGCAAATATTAAAAG-CGGCAATAACTATGGGTTCCGACAGTAAGTTAAGCA---------------------------------------------------------------------TTCTCCAGG----------------------CTTTAATT-AAGACAATTT-----------------------TT-------------ACTACTTTGTG---------CAAGTAA--------CACATA----CAGTACATAC-GTACATACATACATACATACATACATACATAC-GTACATACATACATACATACAT-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCCGGCAATTGAGGGCAAATTACCAGAAGCTTACGTACCAGACATTATTGG------------------TGAGTAC-CCAGAC--AATTA---T--T-AATA----------------------------------------------------------------------AGCAACAATAACAAGTAAGAAAGCTCTAGTCGAGA--CT---GCTCGACTACGAGATCCCCTGAACCCTTGGAGCAATAGATATTTCAATAC---------------------TTTTTCGCGACTTTCAGCTTACAC------------------------------------------------------------------------AAGA--------AA-----------------CA--CAC-ACACACACACACACGCACGTACGCACACACAG-GCATACATACACACACACGCAT-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................AAATTACCAGAAGCTTACGTACCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
..........................................................................................................................................................................................................................................................................................................TCAGCTTACAC------------------------------------------------------------------------AAGA--------AA-----------------CA--CAC-ACAC....................................................26200.90180000180
...................................................................................................................................................................................................................................ATCCCCTGAACCCTTGGAGCAATAGAT..............................................................................................................................................................................................................................27200.306600000
.............................................................................................................................................................................................AGAAAGCTCTAGTCGAGA--CT---G.....................................................................................................................................................................................................................................................................21200.255500000
....................................................................................................................................................................................................................................TCCCCTGAACCCTTGGAGCAATA.................................................................................................................................................................................................................................23200.204400000
..........................................................................................................................................................................................................................GACTACGAGATCCCCTGAACCCTTG.........................................................................................................................................................................................................................................25200.153000030
..........................................................................................................................................................................................................................GACTACGAGATCCCCTGAACCCT...........................................................................................................................................................................................................................................23200.102200000
...............................................................................................................................................................................................................................................................................................................TTACAC------------------------------------------------------------------------AAGA--------AA-----------------CA--CAC-ACACAC..................................................23200.102200000
.....................................................................................................................................................................................................CTAGTCGAGA--CT---GCTCGACTACG...........................................................................................................................................................................................................................................................23200.102200000
...........................................................................................................................................................................................................................................................................................................CAGCTTACAC------------------------------------------------------------------------AAGA--------AA-----------------CA--CAC-ACACA...................................................26200.102200000
.................................................................................................................................................................................................................................................TGGAGCAATAGATATTTCAATAC---------------------TTT............................................................................................................................................................................................26200.051000001
...........................................................................................................................................................................................................................................AACCCTTGGAGCAATAGATATTTCAA.......................................................................................................................................................................................................................26200.051100000
..........................................................................................................................................................................................................................................................................................................TCAGCTTACAC------------------------------------------------------------------------AAGA--------AA-----------------CA--CAC-ACA.....................................................25200.051000010
...................................................................................................................................................................................ATAACAAGTAAGAAAGCTC......................................................................................................................................................................................................................................................................................19200.051100000
............................................................................................................................................................................................................................................................................................................AGCTTACAC------------------------------------------------------------------------AAGA--------AA-----------------CA--CAC-ACAC....................................................24200.051000010
................................................................................................................................................................................................AAGCTCTAGTCGAGA--CT---GCTCGA................................................................................................................................................................................................................................................................23200.051100000
...............................................................................................................................................................................................................................................................................................................TTACAC------------------------------------------------------------------------AAGA--------AA-----------------CA--CAC-ACACA...................................................22200.051100000
..........................................................................................................................................................................................................................................................................................................TCAGCTTACAC------------------------------------------------------------------------AAGA--------AA-----------------CA--CAC-ACACA...................................................27200.051000010
..........................................................................................................................................................................................................................................................................................................TCAGCTTACAC------------------------------------------------------------------------AAGA--------AA-----------------CA--CAC-AC......................................................24200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAG-GCATACATACACACACACG....25200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACGTACGCACACACAG-GCATACAT...............27200.051100000
..............................................................................................................................................................................................................................................CCTTGGAGCAATAGATATTTCAATAC---------------------...............................................................................................................................................................................................26200.051100000
.........................................................................................................................................................................................................................................TGAACCCTTGGAGCAATAGATATT...........................................................................................................................................................................................................................24200.051000010
.....................................................................................................................................................................................................CTAGTCGAGA--CT---GCTCGACTACGAGATC......................................................................................................................................................................................................................................................28200.051100000
droVir3
AATAAAAA------A-----------------------------C-----------------------------A--ATAATC----CAATAATAAT-GCCCAAGCATTTGCTTTGTAAC---------AAGTAGATTTATTTTCATGAATTCTAAA---------------------------AAAAAAAAA----ACAATTAA----------------------------------------------------------------------------------------------------------------TTCCCTTTCTT-----------------------------------------------------A--C----TGCACA----CACACA----C-ACACACAC-ACACACACACACACACACACACACACACACAC-ATACACACACACACATACACAC-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACACACACAC-ATA....................21200.051000000000000001000000000000000000000000000000000000000000000000
droGri2
AGCTGCGG------GCAAAAC-------------------------ATTAGTACATTCATATATTTTGGAAATAAC-TTAAAA--TATAG---T--T-AATA-------------------------------------------------------------------------------AACAAGTAAGAGTGCTGTAGTCGAGT--GA---GCTCGATTACGATATACCTTGAACCCCG------------------------TTAAATA--------------------------------------------------------------TATGCAAATATATATTGG-----------AATATTTCC--AT----TTAAAAT-------------------------ATTTACACTAAACGCACT-AAGCCGGCCTGCAAGCGCGCTCTGCCGATAAACACGTGAATAT-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATAATTTT------T-----------------------------C-----G------------------CCAACAC-CAAAAA--CATAA---T--T-AAAAAGCTAATTGA-AATTGTT----------------------------------------------------------------AAGCATAAAAT-----------------------------------------------------------------------CCAATTAGTGTGAAATAAA----------------------TTTA------------------------TTTAAACTGGTT--------------------------------------AGCTAA--------CAAACT----C---ACTAACATAAAATAAACAAACTAACTAACACACACACAC-ACACACACACACACACACACAC-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
AACTGTAA------A-----------------------------C-----------------------------AC-------------------------AT-------------------------------------------------------------------------------ACATATGT-------------------------------------------------------------------------------ATGCA------------CTGCTT---------GCAGGCACAC---------------------------ATCCAA-------------------------------------------------AG-----------------C----AC-ACACACACACACACACACACACACACACACAC-ACACACACACACACACACACAC-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACACAC-ACACA..................19200.0510100000000
droPer2
ACATC-----------------------------------------ATCAG------------------CAGATAC-ATAGAT--CGTAA---T--A-GAT--------------------------------------------------CGTAAGGAAAAACAAAACAAAAACAACAAGAATAGAGCACAACAATGGACTACGGGGCCTACGCTC--------------------------------TGAATGTTTGAATAT---------------------TTT-------------------------------------------------------------GT-------------CTCATTTTGGGTCACAGCAGC----AA------------------------------CACA------------------CACACACAC-ACACACACACACACACACACACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TGCAGCAA------G-----------------------------A-----------------------------GTTCAATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGATACACTT---------------------CACACAGATACAAAA--------------------------------------------------------------------------------AG-----------------CACACAC-CTACGCAAACACGCGCCCCTACGCACACACAT-ACACCCCTACCTGAGCACACAC-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGCAGCAA------G-----------------------------A-----------------------------GTTCAATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGATATACTT---------------------CACACAGATACAAAA--------------------------------------------------------------------------------AG-----------------CACACAC-CTACGCAAACACGCGCCCCTACGCACACACAT-ACACCCCAACTCGCACACACAC-SizeHit CountTotal NormTotal
No Reads
droKik1
AAGCA----------------------------------------------------------------------T-TGAAAA---------------CATTG----------------------------------------------------------------------------ATAACAAA-------------------------------------------------------------ACA-------------------TAT------------TTT-------------------------------------------------------------AC-------------CTTTAATGCGTA---------------------------CA----C---ATACACAACACACACACACACACACACACACACACACAC-ACACACACACACACACACACAC-SizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAA------A-----------------------------T-----------------------------GC----------------------------------------------------------------------------------------------------------------CAAAAGA-----------------------------------------------------------------------CCGTTTCGCATGGCCCAGA----------------------GCTTTA------------------------GGCGCAA-------------------------------------------------AT-----------------C----AA-CCACCCAACC--ACCCTCATACACACACTCAC-ACACACAAACACACACACACACTSizeHit CountTotal NormTotal
No Reads
droEle1
TCCGCCGA------A-----------------------------C-------------------------------TTGGAGC---------------CATAG-------------------------------------------------------------------------------ACACATAAACGTG-------------------------------------------------------------------------------------------CTGCTG----------------TCAAC--------------------------------------------------------------------------------CGCACACGCACATGCC-GACACACCC-ACACACGCACACACACACACCCGCACACCCGC-ACACACACACACACGCCCACAT-SizeHit CountTotal NormTotal
No Reads
droRho1
AACTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGAAAGAACGCTATAGTCGAGT---G---CCTCGACTATTAGATACCCGTTACTCAG------------------------CTAAACAATTGC----------------------------------------------------------------------------------------AAC----------------------------------------T---GTGTAC--AATGTAAATACATACATACATATGTATATGC-TTACATACATACACACATACGC-SizeHit CountTotal NormTotal
No Reads
droBia1
GAGACCTC------G-----------------------------A-----------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAACG-------------------TATTTTT---------------------CAGACGGGTTCGAAC-CCTCCCCCCCCCCC-----------------------------------------------------A--C----C---------------------ACACACAC-ACACACACACACACACACACACACACACACAC-ACACACACACACACACACACAC-SizeHit CountTotal NormTotal
No Reads
droTak1
TAGTTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATAAGAACAAGAGAAAACGCTATAGTCGGGT--TTGTGCCCCGACTATCTAATACCCGTTACTCTG------------------------CTAAAG------------------------------------------GCAGTGCGAGGGAGATGGATATATACAATTTTTTGATTGCGTATAACTTTTTAATTTC-------------------------------GA----C-AGACAGAC-AGACAGACAGACAGACAGACAGACAGACAGAC-AGACAGACAGACAGACAGACAG-SizeHit CountTotal NormTotal
No Reads
droEug1
CTTCAAGA------T-----------------------------C-------------------------------TCC----------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTTT------------------------TCTCTATATATAG---------------------CATACATATT-----------GGCGCTCTG-----------------------------------------------------G--C----CATACACGCACACACACACA-CACAGATAT-ACACACACATGCATGCAAACAAACACACTTAG-ACGCATTTTCCCACACACACAC-SizeHit CountTotal NormTotal
No Reads
dm3
TTT--------------------------------------------------------------------------CAATCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACACACACACACACACACACACACACACACAC-ACACACACACACACACAAACAC-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------...................................................................................27111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000010300000
................................................................................TCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGA..........................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010002110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------................................................................2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
....................................................................................................................................................................................................................................................................................................................CAAGA--------------------------------------------------------------------------------AC-----------------C-------ACACACACACACACACACACACACACA.............................3514.0040000000000000000000000000000000000000000000000000000000003010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACACACA.................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.................................................................................................TCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------...................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000100000
................................................................................................TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------...................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
................................................................................................TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------A..................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACACACA.................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..............................................................................AATCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGA..........................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAA.....................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
TTT--------------------------------------------------------------------------CAATCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCT.................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAG....................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...................................................................................................................................................................................................................................................................................................................GCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACACACACACACACACACACACACAC..............................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCA............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAG....................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAG....................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAG....................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------A.......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..T--------------------------------------------------------------------------CAATCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGA..........................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAG....................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................ATCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAG.........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACAC....................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------A.......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACACACA.................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACA.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGG........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAA.....................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGC.......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACACACA.................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACA.....................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CTTAGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACACACA.................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGA..........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGG........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TT--------------------------------------------------------------------------CAATCCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTA...............................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CCAA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGA..........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AA--------T--TTCGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTAGCAGAGGC.......................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AGCAGAGGCAAGA--------------------------------------------------------------------------------AC-----------------C-------ACA.....................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACAC-ACACACACACAC...........21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACACACAC-ACACACACA..............25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACACACACACAC-AC.....................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACAC-ACACACACAC.............22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................C-------ACACACACACACACACACACACACACACACAC-AC.....................35200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACACAC-ACACACACACA............25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACAC-ACACACACACACACACAAAC...29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACACACACACACACAC-.......................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACACACAC..................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droSim2
GAAGCGTT------G----------------------------------------------------------------GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATGGATATTCGGGTTC---------------------ATTGCTTTGACATTGATGAGACAG------------------------------------------------------------------------GACA--------AG-----------------GC--TAG-ACACACACACACACACACACAGACACACACAC-ACACACAGACACACACACACAC-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................TGAGACAG------------------------------------------------------------------------GACA--------AG-----------------GC--TAG-ACACACA.................................................2611.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................TAG-ACACACACACACACACACACAGA.................................2620.50100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACACA...................................18200.05100000001000000000
droSec2
CAGGCCAT------A-----------------------------A------------------------------------------------T--T-GCTTGGCAAGTTAATAAGTGGC----------------------------------------------------------------AAGTCAAAAAG-----------------------------------------------------------------------CTTATCCCCTGGACCCAGA----------------------ACCC------------------------CTCGCACTTATTTCTT-------------CCCATTTCC--CC----AAAGAACCAC--------------------------------------------------------CACAC-ACAC-CACAC-GCCACACGCAC-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTAATTAT------A-----------------------------A-----------------------------A---------------------TAAGTTAGC--ATTAGAGAATGACCGAAATAATATGGTGGTTTAT-------------ACACAAGCAATGGCAA-CCACAATAAAAACAAGTGAGAACGCTATAGTCGAGT---T---CCTCGACTATCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATACCC-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................T-------------ACACAAGCAATGGCAA-CCACAATAA........................................................................................................................................................................................................................................................................................................26200.25505000000000
.............................................................................................................TAGAGAATGACCGAAATAATATGGT......................................................................................................................................................................................................................................................................................................................................................25200.10202000000000
............................................................................................................................ATAATATGGTGGTTTAT-------------ACAC..............................................................................................................................................................................................................................................................................................................................21200.05101000000000
............................................................................................................................................T-------------ACACAAGCAATGGCAA-CCACA............................................................................................................................................................................................................................................................................................................22200.05101000000000
droEre2
TACAAGAC------A-----------------------------ATATTT---TT--------------------C-CC---------------------------------------------------------------------------AAGCAAATATTAAAAG-CGGCAATAACTATGGGTTCCGACAGTAAGTTAAGCA---------------------------------------------------------------------TTCTCCAGG----------------------CTTTAATT-AAGACAATTT-----------------------TT-------------ACTACTTTGTG---------CAAGTAA--------CACATA----CAGTACATAC-GTACATACATACATACATACATACATACATAC-GTACATACATACATACATACAT-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:16 AM