ID:

dmo_1336

 Coordinate:

scaffold_6498:1031146-1031256 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.4 -10.0

Flybase annnotation

exon [dmoj_GLEANR_14172:5]; CDS [Dmoj\GI14092-cds]; exon [dmoj_GLEANR_14172:6]; CDS [Dmoj\GI14092-cds]; intron [Dmoj\GI14092-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_1796:616-637 +
  2. scaffold_6473:1568527-1568548 +
  3. scaffold_6496:4558737-4558758 +
  4. scaffold_6496:6689963-6689984 +
  5. scaffold_6496:19027301-19027322 +
  6. scaffold_6498:160474-160495 +
  7. dmo_1336  scaffold_6498:1031193-1031214 +
  8. scaffold_6500:692853-692874 +
  9. scaffold_6500:996002-996023 +
  10. scaffold_6500:8346922-8346943 +
  11. scaffold_6500:10204344-10204365 +
  12. scaffold_6540:2746461-2746482 +
  13. scaffold_6540:11101062-11101083 +
  14. scaffold_6540:13495383-13495404 +
  15. scaffold_6540:21657685-21657706 +
  16. scaffold_6540:24061263-24061284 +
  17. scaffold_6540:28939116-28939137 +
  18. scaffold_6680:2727673-2727694 +
  19. scaffold_6680:20812274-20812295 +
  20. scaffold_6680:22451715-22451736 +
  21. scaffold_6328:1366328-1366349 +
  22. scaffold_6359:2180679-2180700 +
  23. scaffold_6359:2360921-2360942 +
  24. scaffold_6359:3077644-3077665 +
  25. scaffold_6359:3959039-3959060 +
  26. scaffold_6473:3885649-3885670 +
  27. scaffold_6473:10463217-10463238 +
  28. scaffold_6473:11084752-11084773 +
  29. scaffold_6473:12449596-12449617 +
  30. scaffold_6473:15927889-15927910 +
  31. scaffold_6496:5761331-5761352 +
  32. scaffold_6500:3883593-3883614 +
  33. scaffold_6500:8628158-8628179 +
  34. scaffold_6500:26228058-26228079 +
  35. scaffold_6540:15594104-15594125 +
  36. scaffold_6540:17648667-17648688 +
  37. scaffold_6680:7337520-7337541 +
  38. scaffold_6680:8067740-8067761 +
  39. scaffold_6680:13351530-13351551 +
  40. scaffold_6680:17390044-17390065 +
star
  1. scaffold_6328:125933-125950 +
  2. dmo_510  scaffold_6328:2719791-2719808 +
  3. scaffold_6359:164969-164986 +
  4. scaffold_6424:6187-6204 +
  5. scaffold_6473:1831699-1831716 +
  6. scaffold_6473:3691312-3691329 +
  7. scaffold_6473:8158841-8158858 +
  8. dmo_1336  scaffold_6498:1031171-1031188 +
  9. scaffold_6500:14643415-14643432 +
  10. scaffold_6500:19131525-19131542 +
  11. scaffold_6500:20712340-20712357 +
  12. scaffold_6500:23360733-23360750 +
  13. scaffold_6500:27223451-27223468 +
  14. scaffold_6518:1428-1445 +
  15. scaffold_6540:5445373-5445390 +
  16. scaffold_6540:24407439-24407456 +
  17. scaffold_6540:25436089-25436106 +
  18. scaffold_6680:2441268-2441285 +
  19. scaffold_6680:7545338-7545355 +
  20. scaffold_6680:12860122-12860139 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------##################################################
GTGGCAGACCCAAAAAACTAAAGCCCAGCCTAGAGAACATGTTGATAAACGTCAAGCAACAGCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAACAACAGCAACAATCGGCAAATGCAACACCAACTGGAGG
***************************************************************************.......((.((.((.((.((....)).)).)).)).)).....******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V056
head
...........................................GATAAACGTCAAGCAACAG..................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................AGCAACAGCAACAATCGGCAAATGC............... 25 1 1 1.00 1 0 1 0 0
..........................................GGATAAACGTCAAGCAACAGCATCAT............................................................................................................................................... 26 1 1 1.00 1 1 0 0 0
.................................................................................................GCAGCAGCAGCAGCAGCAGCAG............................................................................................ 22 0 20 0.10 2 2 0 0 0
......................................................................................................................GCAGCAGCAGCAGCAGCAGCAGCAGCAGC................................................................ 29 0 20 0.05 1 0 1 0 0
................................................................................................................GCAGCAGCAGCAGCAGCAGCAGCAGCAGC...................................................................... 29 0 20 0.05 1 0 1 0 0
...........................................................................ATCATCAGCAGCAGCAGC...................................................................................................................... 18 0 20 0.05 1 0 1 0 0
.....................................................................................GCAGCAGCAGCAGCAGCAGCAGCAGCAG.................................................................................................. 28 0 20 0.05 1 1 0 0 0
.............................................................................................................GCAGCAGCAGCAGCAGCAGCAGCAGCAGC......................................................................... 29 0 20 0.05 1 0 1 0 0
.........................................................................TCATCATCAGCAGCAGCAGCAGCA.................................................................................................................. 24 0 20 0.05 1 1 0 0 0
..........................................................................................................GCAGCAGCAGCAGCAGCAGCAGCAGCAGC............................................................................ 29 0 20 0.05 1 0 1 0 0
............................................................................................................................................CAGCAGCAGCAACAGCAGCAGCAGCA............................................. 26 0 20 0.05 1 1 0 0 0
......................................................................TCATCATCATCAGCAGCAGCAGCA..................................................................................................................... 24 0 20 0.05 1 1 0 0 0
....................................................................................................................................AGCAGCAGCAGCAGCAGCAACAGC....................................................... 24 0 20 0.05 1 1 0 0 0
....................................................................................................................................................GCAACAGCAGCAGCAGCAA............................................ 19 0 20 0.05 1 0 0 1 0
..............................................................................................................................................................CAGCAGCAACAACAACAACA................................. 20 0 20 0.05 1 0 1 0 0
.........................................................................................................................GCAGCAGCAGCAGCAGCAGCAGCAGCAGC............................................................. 29 0 20 0.05 1 0 1 0 0
.......................................................................CATCATCATCAGCAGCAGCAGCAG.................................................................................................................... 24 0 20 0.05 1 1 0 0 0
..........................................................................................................................................................GCAGCAGCAGCAACAACAACAACAGCA.............................. 27 0 20 0.05 1 0 0 0 1
...................................................................................................................GCAGCAGCAGCAGCAGCAGCAGCAGCAGC................................................................... 29 0 20 0.05 1 0 1 0 0
.......................................................................CATCATCATCAGCAGCAGCAGC...................................................................................................................... 22 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

CACCGTCTGGGTTTTTTGATTTCGGGTCGGATCTCTTGTACAACTATTTGCAGTTCGTTGTCGTAGTAGTAGTAGTAGTAGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTTGTCGTCGTCGTCGTTGTTGTTGTTGTCGTTGTTAGCCGTTTACGTTGTGGTTGACCTCC
********************************************************************************************.......((.((.((.((.((....)).)).)).)).)).....*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
.................................................GCATTCCGTTGTCCTAGTA............................................................................................................................................... 19 3 12 0.08 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:1031096-1031306 + dmo_1336 GTGG-CAGACCCAA--A-AA------------ACTAAA------GCCCAGCCT----------A--------------G--------------------------------------------AGAACATGTTGATAAAC---------------------------------------------------------------------------------------GTCAAGCAAC------------------------------------AGCATCATCATCATCATCATCAG---CAGC------AGCA-----------GC---AGCAGCAGC---AGCAGC---------------------------AG------------------CAGCAGCAGCA--G---------------CAGCAG---------CAG------------CAGCAG---CAGCA---------------GCAGC------------AGCAACAGCAGCAGCAGCAACAACAA------CAACAGCAAC------AA--TCGGCAAATGCAACACCAAC-------------------------TGGA------------GG
droVir3 scaffold_13042:4705292-4705491 - GCAA-CAGCAACAA--A-------------------------------------------------------------TGCAACAG------------------------------------------------------------------CAACAAATGCAACAGCAACAAATGCAACAGC---------------------------------------------------------AA------------------------------------------C---AA---------ATTCAACAGCAACAAATTC--------------AA------CA---GCAACAAATG---CAACAGCAACAAAT---------------------GCAACAGCAACA--G---------------CTGCAG---------CAG------------CAACAG---CTGCAGCAGCAGCAGCT---G---------CAGCAGC------------AGCA------ACTG------CAACAGCAGCAACAGCAAC---AA---ATGCAACAGCAAC-------------------------------------------
droGri2 scaffold_14685:2688-2897 - ATTG-GAAATGAAG--A-AA------------------------TCGCTGCCG----------AATCCACAG----------------------------CAC--------TGCT-----------------GCAGT-------ATC---A---------------------------------------------------------------------------------GCAGC------------------------------------AGCAACAGCAGCAACAGCAGCAG---CAGC------AACAGCAGCAGCA-----AC---AGCAG---CAACAGC---------------AGCA---------G------------CAACAGCAGCAA-----------------------C---AT---------C------AGC---------AG------CACCA------ACAGCAGCAGCAGCAACAACAG------------CAGCAA------CAA------CAGCAGCAGCAGCAACAGC---AG---CAGCAGCAACAAC-------------------------AGCA-------------G
droWil2 scf2_1100000004949:1100758-1100957 + GTTG-CATACCCTA--C-AA-------------------------------------------G--------------GTGTTCAAGTCAAGAAAGATCCCGA--------------TGCAC---------------------------A----------------------------------------------------------------------------------GCAAC------------------------------------AGCAGCAGCAGCAGCAGCAACAG---CAGC------AGCA--------------GCAGCAGCAGC---AGCAGC---------------------------AG-----------------------------CAGCAGCAGCAGCAG---CAGCAA---------CAA------------CAACAA---CAACAACAACAACAACA---A---------CAACAAC------------AACA------ACAA------CAACAACAACAACAACAAC---AA---CAACAACATCAGC-------------------------------------------
dp5 3:11298349-11298568 + dps_1160 GCCA---AAGTCAAAGCCCAAGCCGAAGCC----------------------------------------------------------------------CGTGCCTCAGTTGGCGG------AGACCATGAAGCGACCCATCCACC---A---------------------------------------------------------------------------------GCAGC------------------------------------AGCAACATCAGCTGCAGCAGCAG---CAAC------AACA-----------GC---AGCAACATC---AACTGC---------------------------AG-----------------------------CAGCAGCATCAGCAG---C---------AGCAGC------AGC------AACTGCAGCAGAA---------GCA---G---------CAACAG------------CAACAA------CAG------CAGCAGCAACATAAACATC---AA---CAGCAACAACAGC-------------------------AGCA-------------G
droPer2 scaffold_4:6701348-6701567 + dpe_1633 GCCA---AAGTCAAAGCCCAAGCCGAAGCC----------------------------------------------------------------------CGTGCCTCAGTTGGCGG------AGACCATGAAGCGACCCATCCACC---A---------------------------------------------------------------------------------GCAGC------------------------------------AACAACATCAGCTGCAGCAGCAG---CAAC------AACA-----------GC---AGCAACATC---AACTGC---------------------------AG-----------------------------CAGCAGCATCAGCAG---C---------AGCAAC------AGC------AGCTGCAGCAGAA---------GCA---G---------CAACAG------------CAACAA------CAG------CAGCAGCAACATAAACATC---AA---CAGCAACAACAGC-------------------------AGCA-------------G
droAna3 scaffold_13248:2270645-2270862 - dan_4064 GTGG-CAGAAGCAA--C-GA------------TCTAACAATAAATTGCAGCAG----------A--------------AACAGCAGGCAGAGCAG------------------------------------G------------------------------------AGCGA------------------------------------------------------------CGGC------------------------AGCAGCAGCAGCCA---CA---GC---AGCAACAGCAGCAGC------AGC--------------AACA---G------CAA---------------CAGCAACA---------G------------CAACAGCAGCAGCAACA--G---------------CAGCAG---------CAA------------CAGCAG---CAGCAGCCACAGCAGCA---G---------CAACAGC------------AGCA------ACGA------CAGCAGCAGCAGCAACGTC---AG---CAGCAGCAGCAAC-------------------------------------------
droBip1 scf7180000396691:664825-665040 - GCGG-CATGCCAAG--G-TG------------CA---------------------------------------------------------------------------------------------CCTGAAGCAGCGCATCAAGA---A---------------------------------------------------------------------------------GGAGA------------------------------------AAGTGCGTGGCGAGCAGCAACAG---CAGC------AGCA-----------AC---ACCAACAGC---AACAGC---------------------------AG-----------------------------CAGCAG------------------CTCCAG---CAACAGCAGC------AACAC---------------CACCA---C---------CAGCAGC------------AGCA------ACAG------CATCCGCAGTACCAGCACT---------CCCATCACCACCTCCTTCAGGCCGCCGATCTGGCCATTGGGACGTCGAGTGCGAG
droKik1 scf7180000302441:2840807-2841020 - GCAG-CAGCAGCAA--C-AA------------GTTATCACCC------A----GCGACATGTA-----------------------------------------------------------------------------------------ATAA---------------------------------------------------------ACACAT-CAA-C-GGCCCAAGGACAACAGATAATCCAAAGTCTTCAACAGAAGCAGCAGCAA---A---TGTTGCATGTTCAA---CAAC------AGC-----------------------------AA---------------------------CAGC---CACAACAACAGCAACTTCCT-----------------------------------------C---------------AGGGG---CAGCAA------------------------CATCCC------------CAACAA------CAA------CAACAACAACAGCAACAAC---AA---CAGCAGCAACAAC-------------------------CGCA-------------G
droFic1 scf7180000454073:2304171-2304374 + GCGG-CAAAACAAA--A-AA------------GT---------------TTCA----------ACTCCATAT----------------------GGAGCCCAC--------TGGTAA------GGAGAA------------------------------------------------------------------------------------------------------AGAAGC------------------------------------AGCAACATCAGCAGCAGCAGCAA---CAGC------AGCA-----------AC---AGCAGCAAC---ATCAGC---------------------------AG------------------CA-----------GCAGCAACAGCAGCAAC---AT---------C------AGC---------AA---CAGCA---------------GCAAC------------AGCAACAGCAACTCCAGC------AGCAACATCAGTGCAAACAACATCAAC---AA---C------AGCAGC-------------------------AGCA-------------A
droEle1 scf7180000491249:3879391-3879603 + TTGC-CGAAGTCGA--A-CAACGCAAAGCCAAGC---------------TTCG----------TGTCCACATGTTGCTAGCAGCAGGCA----------------------------------------------------------------------------------------------------------------------------------------------CACAAC------------------------------------AGCAACATTAGCTACAGCAGCAA---CAGC------AACT-----------AC---AGCAGCAGC---AACAGC---------------------------TA-----------------------------CAGCAGCAGCATCAACTAC---AT---------C------AGA------AACAG------CA---------------GCAGC------------AGCAGCAACAACTACAGC------ACCAACAACTACGGCAACAGCAGCAAC---AA---CTACAGCAGCAAC-------------------------------------------
droRho1 scf7180000777787:21416-21616 - ATCAATACCAACAA--C-A---------------------------------------------------------------------------C------CA--------------AATATT------------------------ACA-CC---------------A---------------------------------------------------------------ACAAC------------------------AA---CAATTGCCA---AATCACC---AC---------CATC------ATCATCATC--------------ATCACCACCA---CCATCACAGTCAACTACAACT---CCA---A---------------CAACAACAACAACA--G---------------C---------------------AACATCAACAACAA---CAGCAGCAACACCAACA---A---------CAGCCGC------------TACA------CCAA------CAACAGCAATTGCAACACC---AG---CAGCAACACCAAC-------------------------------------------
droBia1 scf7180000302428:5893123-5893346 + GCAG-CAGATCAAA--A-AC------------ATTATACAGC------A----GAGGCAATTG-----------------------------------------------------------------------------------------AAGAACACGCAGCAGCAGTCTCAGCAACAGC---------------------------------------------------------AGCAAATTCAAATGATT---------------------CA---GC---AGCAACAA------------------CAGCAGCAGC--AGCA---G------CAA---------------CAACAGCAGCAGCA---------------------GCAGCAACAACA--G---------------CAGCAG---------CAG------------CAGCAG---CAACAACAGCAGCAACA---A---------CAGCAGC------------AGCA------ACAA------CAGCAGCAGCAGCAACAAC---AG---CTGCAACAACAAC-------------------------------------------
droTak1 scf7180000415794:18007-18214 - CAG--CA------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGTGCAGCTGCA---------GCCCAACCAGGT--GTATCAGCACGT-CGGACAGGTCCCGCAGC------------------------------------AACAACAGCCTGTATATCAGCAG---CAGC------AACA-----------GC---AGCCAGTCT---ACCAGC---------------------------AG-----------------------------CAGCAACAGCAGCCA---G---TC---------T---------------ACCAG---CAGCAGCA------------ACCTG------------TGCAACAGCAGCAGCAGCAGCAACAA------CCTGTGCAACAGCAACCCG---TA---CAGCAGCAACAAC-------------------------------------------
droEug1 scf7180000409032:796215-796393 + AGAA-CTTG--------------------------------------------------------------------------------------------------------------------------TTACT-----------GCA----------------------------------------------------------------------------------GCAGC------------------------------------AGCAACAACAGCAGCAGCAACAA---CAGC------AGCA---------GC--AGC---CGCAAC---AACAGC------------------A---GCAGC---C---------------GCAACAACAGCA--G---------------C---AGCCG------CAA------------CAACAG---CAGCA---GCAGCAACA---A---------CAGCAGC------------AGCA------ACAA------CAGCAGCAGCAGCAACAACCGCAGCTGCTGCAACAACAAC-------------------------AGCA-------------G
dm3 chrX:8949706-8949893 - AAGC-CAAAGTCAA--C-CA-------------------------------------------A--------------AGCAGCAGGCGAAAGAG------------------------------------------------------------------------------------------------------------------------------------------GAGC------------------AGCAGCAGCAACAGCATCCA---G---AGTTGCAGCAACAG---CAAC------AGCA-----------GC---A---G------CAA---------------CAGCAACA---------G------------CAACAGCAACAGCAACA--G---------------CAA------------C------AGC------AACAGCAACAGCA---------ACA---G---------CAACAG------------CAACAA------CAG------CAGCAACAGCAGCAACAGC---AA---CTCAAGCAACAAC-------------------------------------------
droSim2 x:8497748-8497955 - AAGC-CAAAGTCAA--C-CA-------------------------------------------A--------------AGCAGCAGGCGAAGGAG------------------------------------G------------------AGC---------------A---------------------------------------------------------------GCAGC------------------------AA---CAGCAGCCA---GAGTTGC---AG---------CAAC------ATCAGCAGCAGCA-----AC---AG------CA---GCAA---------CGACAGCA---GCAGC---A---------------GCAACATCAACA--G---------------C---AACAG------CAT------------CAGCAA---CTGCA---------------GCAGCAGCAACAGCAG------------CAGCA------ACAA------CAGCAACTGAAGCAACAACATCAGCCCGACCAGCAGCAAC-------------------------TGCA-------------G
droSec2 scaffold_2:5217129-5217329 - GCAG-CGGCAGCAA--C-A---------------------------------------------------------------------------A------CA--------------AGTGTC------------------------GCC-GG---------------GACAACAGTCGCAGC-----------------AAA------------------------GGCTA---------G------------------CAAA---------ACCACAA---GC---AGAACAAG------------------CAGCAGCAGC--AGCA---G------CAA---------------CAACAGCG---ACAGC---A---------------GCAACATCAACA--G---------------CAGCAG---------CAA------------AAGCAG---CAGCAACAGCAGCAGCG---G---------CAGCAGC------------AGCA------GTAC------CTGCAACAGCAACACCTGC---AA---CAGCAGCAGCAAC-------------------------------------------
droYak3 2L:3403325-3403544 + GTGG-CATGAACAA--T-A---------------------------------------------------------------------------T------GA--------------TTCGCG------------------------GCA-GC---------------AACAACGGAAGCTGCA---------ACATAAATAAATACCATTCAGCACAAATG------------------------------------------------------------------------GA------CATCAGCAGCAGTAGC--------------AACAGCAGCAACA------------------------GCA---------------------GCAGCAGCAACC--G---------------CAGCAGCAGCAG---CAACAGCAGC------AACAG---------------CAGCA---G---------CAGCAGCAGCAACAGCAGCAGAAGCAGCAACAG------CATCAGCAGC------AGC---AT---CCCCCGCAGCAAC-------------------------ACAA-------------A
droEre2 scaffold_4784:3585696-3585910 + ATAG-CAAAGCCAA--C-GG------------CA---------------------------------------------------------------------------------------------------------------------------------------GCGATCGCATCCCCGAGAAAATCATCACAATC---------------------------------AGT------------------------------------CACATCATCACATGCAGCAACAG---CCAC------AGCA---------GC--AGCA---GCAGC---ATCAGA------------------G---TCA---GCC------------GCAGCA-----------G---------------------CCGCAG---CAGCAGCAGC------ATCAGCAGCAGCA---------GCC---C---------CAGCAG------CAGCAGCAGC------------------CGCAGCAGCAGCACCAGC---CA---CTGCAGCAGCAAC-------------------------TGCAGCATACAGTGGGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GTGG-CAGACCCAA--A-AA------------ACTAAA------GCCCAGCCT----------A--------------G--------------------------------------------AGAACATGTTGATAAAC---------------------------------------------------------------------------------------GTCAAGCAAC------------------------------------AGCATCATCATCATCATCATCAG---CAGC------AGCA-----------GC---AGCAGCAGC---AGCAGC---------------------------AG------------------CAGCAGCAGCA--G---------------CAGCAG---------CAG------------CAGCAG---CAGCA---------------GCAGC------------AGCAACAGCAGCAGCAGCAACAACAA------CAACAGCAAC------AA--TCGGCAAATGCAACACCAAC-------------------------TGGA------------GGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................GATAAAC---------------------------------------------------------------------------------------GTCAAGCAAC------------------------------------AG...................................................................................................................................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................................................................................................................................................................................GCAGC---AGCAGC---------------------------AG------------------CAGCAGCAG...................................................................................................................................................................................................................22200.102200000
..................................................................................................................................................................................................................................................................................................................................................................................................................GCA--G---------------CAGCAG---------CAG------------CAGCAG---CAGCA---------------GCAGC------------...................................................................................................................29200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA--G---------------CAGCAG---------CAG------------CAGCAG---CAGC....................................................................................................................................................29200.051000010
................................................................................................................................................................................................................................................................................................ATCATCAG---CAGC------AGCA-----------GC---.............................................................................................................................................................................................................................................................................................18200.051000010
.............................................................................................................................................................................................................................................................................................................GC------AGCA-----------GC---AGCAGCAGC---AGCAGC---------------------------AG------------------CAG.........................................................................................................................................................................................................................28200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................G------------------CAGCAGCAGCA--G---------------CAGCAG---------CAG------------CAGCAG---C.......................................................................................................................................................29200.051000010
..............................................................................................................................................................................................................................................................................................TCATCATCAG---CAGC------AGCA-----------GC---AGCA.........................................................................................................................................................................................................................................................................................24200.051100000
.........................................................................................................................................................................................................................................................................................................................................................GC---------------------------AG------------------CAGCAGCAGCA--G---------------CAGCAG---------CAG------------CAGC.............................................................................................................................................................29200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAGC------------AGCAACAGCAGCAGCAGCA................................................................................................26200.051100000
...........................................................................................................................................................................................................................................................................................TCATCATCATCAG---CAGC------AGCA-----------GC---A............................................................................................................................................................................................................................................................................................24200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---CAGCA---------------GCAGC------------AGCAACAGC..........................................................................................................24200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAGCAA...............................................................................................19200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAACAA------CAACA..............................................................................20200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................G---------------CAGCAG---------CAG------------CAGCAG---CAGCA---------------GCAGC------------AGC................................................................................................................29200.051000010
............................................................................................................................................................................................................................................................................................CATCATCATCAG---CAGC------AGCA-----------GC---AG...........................................................................................................................................................................................................................................................................................24200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAACAA------CAACAGCA...........................................................................27200.051000100
...............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA--G---------------CAGCAG---------CAG------------CAGCAG---CAGCA---------------GC..................................................................................................................................29200.051000010
............................................................................................................................................................................................................................................................................................CATCATCATCAG---CAGC------AGCA-----------GC---.............................................................................................................................................................................................................................................................................................22200.051100000
droVir3
GCAA-CAGCAACAA--A-------------------------------------------------------------TGCAACAG------------------------------------------------------------------CAACAAATGCAACAGCAACAAATGCAACAGC---------------------------------------------------------AA------------------------------------------C---AA---------ATTCAACAGCAACAAATTC--------------AA------CA---GCAACAAATG---CAACAGCAACAAAT---------------------GCAACAGCAACA--G---------------CTGCAG---------CAG------------CAACAG---CTGCAGCAGCAGCAGCT---G---------CAGCAGC------------AGCA------ACTG------CAACAGCAGCAACAGCAAC---AA---ATGCAACAGCAAC-------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA--G---------------CTGCAG---------CAG------------CAACA............................................................................................................................................................2260.171000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACA--G---------------CTGCAG---------CAG------------.................................................................................................................................................................2180.131000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------AGCA------ACTG------CAACAGCAGC.........................................................................2190.111001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CAACA--G---------------CTGCAG---------CAG------------CAACA............................................................................................................................................................20100.101001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCT---G---------CAGCAGC------------A......................................................................................................24110.091001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------------AGCA------ACTG------CAACAGCA...........................................................................21110.091001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------CAGCAGC------------AGCA------ACTG------CAACA..............................................................................21150.071001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CA--G---------------CTGCAG---------CAG------------CAACAG---C.......................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
ATTG-GAAATGAAG--A-AA------------------------TCGCTGCCG----------AATCCACAG----------------------------CAC--------TGCT-----------------GCAGT-------ATC---A---------------------------------------------------------------------------------GCAGC------------------------------------AGCAACAGCAGCAACAGCAGCAG---CAGC------AACAGCAGCAGCA-----AC---AGCAG---CAACAGC---------------AGCA---------G------------CAACAGCAGCAA-----------------------C---AT---------C------AGC---------AG------CACCA------ACAGCAGCAGCAGCAACAACAG------------CAGCAA------CAA------CAGCAGCAGCAGCAACAGC---AG---CAGCAGCAACAAC-------------------------AGCA-------------GSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................ACAGC---------------AGCA---------G------------CAACAGCAGCAA-----------------------C---AT---------C------.........................................................................................................................................................................2650.20110
........................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAG---CAGC------AACA.............................................................................................................................................................................................................................................................................................................24200.10220
......................................................................................................................................................................................................................................................................................................................................................ACAGC---------------AGCA---------G------------CAACAGCA..........................................................................................................................................................................................................................18200.10220
......................................................................................................................................................................................................................................................................................................................................................ACAGC---------------AGCA---------G------------CAACAGCAGCAA-----------------------C---A..........................................................................................................................................................................................24200.05101
......................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCA-----AC---AGCAG---CAACA.............................................................................................................................................................................................................................................................................24200.05101
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CAGCAA------CAA------CAGCAGCAGCAGCAAC...................................................................26200.05110
droWil2
GTTG-CATACCCTA--C-AA-------------------------------------------G--------------GTGTTCAAGTCAAGAAAGATCCCGA--------------TGCAC---------------------------A----------------------------------------------------------------------------------GCAAC------------------------------------AGCAGCAGCAGCAGCAGCAACAG---CAGC------AGCA--------------GCAGCAGCAGC---AGCAGC---------------------------AG-----------------------------CAGCAGCAGCAGCAG---CAGCAA---------CAA------------CAACAA---CAACAACAACAACAACA---A---------CAACAAC------------AACA------ACAA------CAACAACAACAACAACAAC---AA---CAACAACATCAGC-------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................GATCCCGA--------------TGCAC---------------------------A----------------------------------------------------------------------------------GCAAC------------------------------------AG...................................................................................................................................................................................................................................................................................................................................................2111.00101000
..................................................................................TCAAGTCAAGAAAGATCCCGA--------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
......................................................................................................A--------------TGCAC---------------------------A----------------------------------------------------------------------------------GCAAC------------------------------------AGCAGCAGC............................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---AGCAGC---------------------------AG-----------------------------CA...............................................................................................................................................................................................................19200.30600060
.......................................................................................................................CAC---------------------------A----------------------------------------------------------------------------------GCAAC------------------------------------AGCAGCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................24100.10100010
.............................................................................................................................................................................................................................................................................................AGCAGCAACAG---CAGC------AGCA--------------GCAGCA.........................................................................................................................................................................................................................................................................................25200.10200020
.....................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAG---C..........................................................................................................................................................................................................................................................................................................................20200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---A---------CAACAAC------------AACA------ACAA------...................................................................................20200.05101000
............................................................................................................................................................................................................................................C------------------------------------AGCAGCAGCAGCAGCAGCAACAG---...........................................................................................................................................................................................................................................................................................................................24200.05100010
....................................................................................................................................................................................................................................................................................................ACAG---CAGC------AGCA--------------GCAGCAGCAGC---A................................................................................................................................................................................................................................................................................24200.05100010
........................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC---AGCAGC---------------------------AG-----------------------------C................................................................................................................................................................................................................19200.05110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---CAGCAA---------CAA------------CAACA............................................................................................................................................................20200.05101000
.....................................................................................................................................................A----------------------------------------------------------------------------------GCAAC------------------------------------AGCAGCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................21200.05100010
.................................................................................................................................................................................................................................................................................................GCAACAG---CAGC------AGCA--------------GCAGC..........................................................................................................................................................................................................................................................................................20200.05100001
dp5
GCCA---AAGTCAAAGCCCAAGCCGAAGCC----------------------------------------------------------------------CGTGCCTCAGTTGGCGG------AGACCATGAAGCGACCCATCCACC---A---------------------------------------------------------------------------------GCAGC------------------------------------AGCAACATCAGCTGCAGCAGCAG---CAAC------AACA-----------GC---AGCAACATC---AACTGC---------------------------AG-----------------------------CAGCAGCATCAGCAG---C---------AGCAGC------AGC------AACTGCAGCAGAA---------GCA---G---------CAACAG------------CAACAA------CAG------CAGCAGCAACATAAACATC---AA---CAGCAACAACAGC-------------------------AGCA-------------GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................TCAGCTGCAGCAGCAG---CAAC------AACA-----------GC---AGC..........................................................................................................................................................................................................................................................................................2911.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---AA---CAGCAACAACAGC-------------------------AGCA-------------G2340.2510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAGCAG---C---------AGCAGC------.........................................................................................................................................................................19200.1530200100000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAGCAG---C---------AGCAGC------AG.......................................................................................................................................................................21200.1530000100200
...................................................................................................................................................................................................................................................................................................AGCAG---CAAC------AACA-----------GC---AGCA.........................................................................................................................................................................................................................................................................................19200.1530300000000
..........................................................................................................................................................................................................................................................................................................................................................C---------------------------AG-----------------------------CAGCAGCATCAGCAG---C---------AG...................................................................................................................................................................................21200.1020200000000
....................................................................................................................................................................................................................................................................................................GCAG---CAAC------AACA-----------GC---AGCAAC.......................................................................................................................................................................................................................................................................................20200.1020200000000
..........................................................................................................................................................................................................................................................................................................................................................C---------------------------AG-----------------------------CAGCAGCATCAGCAG---C---------AGCAGC------.........................................................................................................................................................................25200.0510010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAGCAG---C---------AGCAGC------AGC------................................................................................................................................................................20200.0510000100000
......................................................................................................................................................................................................................................................................................................................................................................................AG-----------------------------CAGCAGCATCAGCAG---C---------AGCAGC------AG.......................................................................................................................................................................26200.0510100000000
..............................................................................................................................................................................................................................................................................................GCAGCAGCAG---CAAC------AACA-----------GC---AGC..........................................................................................................................................................................................................................................................................................23200.0510100000000
...............................................................................................................................................................................................................................................................................................CAGCAGCAG---CAAC------AACA-----------GC---AGC..........................................................................................................................................................................................................................................................................................22200.0510010000000
..................................................................................................................................................................................................................................................................................................CAGCAG---CAAC------AACA-----------GC---AGCAACA......................................................................................................................................................................................................................................................................................23200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------------CAACAA------CAG------CAGCAGCA...........................................................................21200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................C---------------------------AG-----------------------------CAGCAGCATCAGCAG---C---------A....................................................................................................................................................................................20200.0510000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCAGCAG---C---------AGCAGC------.........................................................................................................................................................................20200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---C---------AGCAGC------AGC------AACTG...........................................................................................................................................................20200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAGCAG---C---------AGCAGC------AGC------................................................................................................................................................................22200.0510010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---G---------CAACAG------------CAACAA------CAG------CAGCA..............................................................................24200.0510000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG------------CAACAA------CAG------CAGCA..............................................................................20200.0510000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------CAACAG------------CAACAA------CAG------CAGCAGC............................................................................23200.0510000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCAGCAG---C---------AGCAGC------AG.......................................................................................................................................................................23200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---G---------CAACAG------------CAACAA------CAG------CAGC...............................................................................21200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCATCAGCAG---C---------AGCA.................................................................................................................................................................................20200.0510000010000
droPer2
GCCA---AAGTCAAAGCCCAAGCCGAAGCC----------------------------------------------------------------------CGTGCCTCAGTTGGCGG------AGACCATGAAGCGACCCATCCACC---A---------------------------------------------------------------------------------GCAGC------------------------------------AACAACATCAGCTGCAGCAGCAG---CAAC------AACA-----------GC---AGCAACATC---AACTGC---------------------------AG-----------------------------CAGCAGCATCAGCAG---C---------AGCAAC------AGC------AGCTGCAGCAGAA---------GCA---G---------CAACAG------------CAACAA------CAG------CAGCAGCAACATAAACATC---AA---CAGCAACAACAGC-------------------------AGCA-------------GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------CAACAG------------CAACAA------CAG------CAGCAGC............................................................................23200.051010000
..............................................................................................................................................................................................................................................................................................GCAGCAGCAG---CAAC------AACA-----------GC---AGCA.........................................................................................................................................................................................................................................................................................24200.051001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CAACAA------CAG------CAGCAGCAACA........................................................................21200.051001000
droAna3
GTGG-CAGAAGCAA--C-GA------------TCTAACAATAAATTGCAGCAG----------A--------------AACAGCAGGCAGAGCAG------------------------------------G------------------------------------AGCGA------------------------------------------------------------CGGC------------------------AGCAGCAGCAGCCA---CA---GC---AGCAACAGCAGCAGC------AGC--------------AACA---G------CAA---------------CAGCAACA---------G------------CAACAGCAGCAGCAACA--G---------------CAGCAG---------CAA------------CAGCAG---CAGCAGCCACAGCAGCA---G---------CAACAGC------------AGCA------ACGA------CAGCAGCAGCAGCAACGTC---AG---CAGCAGCAGCAAC-------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------CAGCAG---CAGCAGCCACAGC...........................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------CAA------------CAGCAG---CAGCAGCCAC..............................................................................................................................................2220.501010000
............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA--G---------------CAGCAG---------CAA------------CAGCAG---CAGC....................................................................................................................................................2960.171010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAGCCACAGCAGCA---G---------C.........................................................................................................................2070.141010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---------CAA------------CAGCAG---CAGCAGCC................................................................................................................................................21160.132011000
......................................................................................................................................................................................................................................................................GCAGCAGCAGCCA---CA---GC---AGC...................................................................................................................................................................................................................................................................................................................................2080.131000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGCAGCCACAGCAGC........................................................................................................................................2080.131000001
................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGC------AGC--------------AACA---G------CA................................................................................................................................................................................................................................................................................25200.102011000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACA--G---------------CAGCAG---------CAA------------CAGCAG---CA......................................................................................................................................................26130.081010000
............................................................................................................................................................................................................................................................................................................................................................................CA---------G------------CAACAGCAGCAGCAACA--G---------------CAGCA..........................................................................................................................................................................................26130.081010000
........................................................................................................................................................................................................................................................................................................................................................................GCAACA---------G------------CAACAGCAGCAGCAACA--G---------------C..............................................................................................................................................................................................26140.071010000
.....................................................................................................................................................................................................................................................................................................................................................AA---------------CAGCAACA---------G------------CAACAGCAGCAGCAAC..................................................................................................................................................................................................................27150.071000001
....................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACA--G---------------CAGCAG---------C...............................................................................................................................................................................25200.051010000
.......................................................................................................................................................................................................................................................................................................................C--------------AACA---G------CAA---------------CAGCAACA---------G------------CAACAGCAGC........................................................................................................................................................................................................................28200.051010000
......................................................................................................................................................................................................................................................................................................AGCAGCAGC------AGC--------------AACA---G------CAA---------------CAGC............................................................................................................................................................................................................................................................24200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA--G---------------CAGCAG---------CAA------------CAGCAG---A.......................................................................................................................................................26200.051100000
......................................................................................................................................................................................................................................................................................................................................................................CAGCAACA---------G------------CAACAGCAGCA.......................................................................................................................................................................................................................20200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................CAACA---------G------------CAACAGCAGCAGCA....................................................................................................................................................................................................................20200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................AACA---------G------------CAACAGCAGCAGCAACA--G---------------C..............................................................................................................................................................................................24200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------CAA------------CAGCAG---CAGCAGCC................................................................................................................................................19200.051000001
.........................................................................................................................................................................................................................................................................................................................................A---G------CAA---------------CAGCAACA---------G------------CAACAGC...........................................................................................................................................................................................................................21200.051001000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA--G---------------CAGCAG---------CAA------------CA...............................................................................................................................................................19200.051010000
.......................................................................................................................................................................................................................................................................................................................................ACA---G------CAA---------------CAGCAACA---------G------------CAAC..............................................................................................................................................................................................................................20200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................CAACA--G---------------CAGCAG---------CAA------------CAGCAG---CAGC....................................................................................................................................................25200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................AACA--G---------------CAGCAG---------CAA------------CAGCA............................................................................................................................................................19200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA--G---------------CAGCAG---------CAA------------CAGC.............................................................................................................................................................23200.051010000
droBip1
GCGG-CATGCCAAG--G-TG------------CA---------------------------------------------------------------------------------------------CCTGAAGCAGCGCATCAAGA---A---------------------------------------------------------------------------------GGAGA------------------------------------AAGTGCGTGGCGAGCAGCAACAG---CAGC------AGCA-----------AC---ACCAACAGC---AACAGC---------------------------AG-----------------------------CAGCAG------------------CTCCAG---CAACAGCAGC------AACAC---------------CACCA---C---------CAGCAGC------------AGCA------ACAG------CATCCGCAGTACCAGCACT---------CCCATCACCACCTCCTTCAGGCCGCCGATCTGGCCATTGGGACGTCGAGTGCGAGSizeHit CountTotal NormTotal
No Reads
droKik1
GCAG-CAGCAGCAA--C-AA------------GTTATCACCC------A----GCGACATGTA-----------------------------------------------------------------------------------------ATAA---------------------------------------------------------ACACAT-CAA-C-GGCCCAAGGACAACAGATAATCCAAAGTCTTCAACAGAAGCAGCAGCAA---A---TGTTGCATGTTCAA---CAAC------AGC-----------------------------AA---------------------------CAGC---CACAACAACAGCAACTTCCT-----------------------------------------C---------------AGGGG---CAGCAA------------------------CATCCC------------CAACAA------CAA------CAACAACAACAGCAACAAC---AA---CAGCAGCAACAAC-------------------------CGCA-------------GSizeHit CountTotal NormTotal
No Reads
droFic1
GCGG-CAAAACAAA--A-AA------------GT---------------TTCA----------ACTCCATAT----------------------GGAGCCCAC--------TGGTAA------GGAGAA------------------------------------------------------------------------------------------------------AGAAGC------------------------------------AGCAACATCAGCAGCAGCAGCAA---CAGC------AGCA-----------AC---AGCAGCAAC---ATCAGC---------------------------AG------------------CA-----------GCAGCAACAGCAGCAAC---AT---------C------AGC---------AA---CAGCA---------------GCAAC------------AGCAACAGCAACTCCAGC------AGCAACATCAGTGCAAACAACATCAAC---AA---C------AGCAGC-------------------------AGCA-------------ASizeHit CountTotal NormTotal
No Reads
droEle1
TTGC-CGAAGTCGA--A-CAACGCAAAGCCAAGC---------------TTCG----------TGTCCACATGTTGCTAGCAGCAGGCA----------------------------------------------------------------------------------------------------------------------------------------------CACAAC------------------------------------AGCAACATTAGCTACAGCAGCAA---CAGC------AACT-----------AC---AGCAGCAGC---AACAGC---------------------------TA-----------------------------CAGCAGCAGCATCAACTAC---AT---------C------AGA------AACAG------CA---------------GCAGC------------AGCAGCAACAACTACAGC------ACCAACAACTACGGCAACAGCAGCAAC---AA---CTACAGCAGCAAC-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATCAATACCAACAA--C-A---------------------------------------------------------------------------C------CA--------------AATATT------------------------ACA-CC---------------A---------------------------------------------------------------ACAAC------------------------AA---CAATTGCCA---AATCACC---AC---------CATC------ATCATCATC--------------ATCACCACCA---CCATCACAGTCAACTACAACT---CCA---A---------------CAACAACAACAACA--G---------------C---------------------AACATCAACAACAA---CAGCAGCAACACCAACA---A---------CAGCCGC------------TACA------CCAA------CAACAGCAATTGCAACACC---AG---CAGCAACACCAAC-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCAG-CAGATCAAA--A-AC------------ATTATACAGC------A----GAGGCAATTG-----------------------------------------------------------------------------------------AAGAACACGCAGCAGCAGTCTCAGCAACAGC---------------------------------------------------------AGCAAATTCAAATGATT---------------------CA---GC---AGCAACAA------------------CAGCAGCAGC--AGCA---G------CAA---------------CAACAGCAGCAGCA---------------------GCAGCAACAACA--G---------------CAGCAG---------CAG------------CAGCAG---CAACAACAGCAGCAACA---A---------CAGCAGC------------AGCA------ACAA------CAGCAGCAGCAGCAACAAC---AG---CTGCAACAACAAC-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAG--CA------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGTGCAGCTGCA---------GCCCAACCAGGT--GTATCAGCACGT-CGGACAGGTCCCGCAGC------------------------------------AACAACAGCCTGTATATCAGCAG---CAGC------AACA-----------GC---AGCCAGTCT---ACCAGC---------------------------AG-----------------------------CAGCAACAGCAGCCA---G---TC---------T---------------ACCAG---CAGCAGCA------------ACCTG------------TGCAACAGCAGCAGCAGCAGCAACAA------CCTGTGCAACAGCAACCCG---TA---CAGCAGCAACAAC-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGAA-CTTG--------------------------------------------------------------------------------------------------------------------------TTACT-----------GCA----------------------------------------------------------------------------------GCAGC------------------------------------AGCAACAACAGCAGCAGCAACAA---CAGC------AGCA---------GC--AGC---CGCAAC---AACAGC------------------A---GCAGC---C---------------GCAACAACAGCA--G---------------C---AGCCG------CAA------------CAACAG---CAGCA---GCAGCAACA---A---------CAGCAGC------------AGCA------ACAA------CAGCAGCAGCAGCAACAACCGCAGCTGCTGCAACAACAAC-------------------------AGCA-------------GSizeHit CountTotal NormTotal
No Reads
dm3
AAGC-CAAAGTCAA--C-CA-------------------------------------------A--------------AGCAGCAGGCGAAAGAG------------------------------------------------------------------------------------------------------------------------------------------GAGC------------------AGCAGCAGCAACAGCATCCA---G---AGTTGCAGCAACAG---CAAC------AGCA-----------GC---A---G------CAA---------------CAGCAACA---------G------------CAACAGCAACAGCAACA--G---------------CAA------------C------AGC------AACAGCAACAGCA---------ACA---G---------CAACAG------------CAACAA------CAG------CAGCAACAGCAGCAACAGC---AA---CTCAAGCAACAAC-------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droSim2
AAGC-CAAAGTCAA--C-CA-------------------------------------------A--------------AGCAGCAGGCGAAGGAG------------------------------------G------------------AGC---------------A---------------------------------------------------------------GCAGC------------------------AA---CAGCAGCCA---GAGTTGC---AG---------CAAC------ATCAGCAGCAGCA-----AC---AG------CA---GCAA---------CGACAGCA---GCAGC---A---------------GCAACATCAACA--G---------------C---AACAG------CAT------------CAGCAA---CTGCA---------------GCAGCAGCAACAGCAG------------CAGCA------ACAA------CAGCAACTGAAGCAACAACATCAGCCCGACCAGCAGCAAC-------------------------TGCA-------------GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAG------------CAGCA------AC...........................................................................................20200.05100000000001000000
droSec2
GCAG-CGGCAGCAA--C-A---------------------------------------------------------------------------A------CA--------------AGTGTC------------------------GCC-GG---------------GACAACAGTCGCAGC-----------------AAA------------------------GGCTA---------G------------------CAAA---------ACCACAA---GC---AGAACAAG------------------CAGCAGCAGC--AGCA---G------CAA---------------CAACAGCG---ACAGC---A---------------GCAACATCAACA--G---------------CAGCAG---------CAA------------AAGCAG---CAGCAACAGCAGCAGCG---G---------CAGCAGC------------AGCA------GTAC------CTGCAACAGCAACACCTGC---AA---CAGCAGCAGCAAC-------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................AGC-----------------AAA------------------------GGCTA---------G------------------CAAA---------ACC..................................................................................................................................................................................................................................................................................................................................................1911.0010001
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........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---------CAA------------AAGCAG---CAGCA...................................................................................................................................................19170.0610010
......................................................................................................................................................................................................................................................................................................AG------------------CAGCAGCAGC--AGCA---G------CA................................................................................................................................................................................................................................................................................19200.0510010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAACAGCAGCAGCG---G---------G.........................................................................................................................20200.0510001
droYak3
GTGG-CATGAACAA--T-A---------------------------------------------------------------------------T------GA--------------TTCGCG------------------------GCA-GC---------------AACAACGGAAGCTGCA---------ACATAAATAAATACCATTCAGCACAAATG------------------------------------------------------------------------GA------CATCAGCAGCAGTAGC--------------AACAGCAGCAACA------------------------GCA---------------------GCAGCAGCAACC--G---------------CAGCAGCAGCAG---CAACAGCAGC------AACAG---------------CAGCA---G---------CAGCAGCAGCAACAGCAGCAGAAGCAGCAACAG------CATCAGCAGC------AGC---AT---CCCCCGCAGCAAC-------------------------ACAA-------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC------AACAG---------------CAGCA---G---------CAGC......................................................................................................................24200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAG---CAACAGCAGC------AAC.............................................................................................................................................................25200.05100000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---G---------CAGCAGCAGCAACAGC..........................................................................................................20200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------CAGCA---G---------CAGCAGCAGCAACAGC..........................................................................................................23200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG------CATCAGCAGC------AGC---.............................................................19200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAACAGCAGC------AACAG---------------CAGCA---....................................................................................................................................22200.05101000000000
droEre2
ATAG-CAAAGCCAA--C-GG------------CA---------------------------------------------------------------------------------------------------------------------------------------GCGATCGCATCCCCGAGAAAATCATCACAATC---------------------------------AGT------------------------------------CACATCATCACATGCAGCAACAG---CCAC------AGCA---------GC--AGCA---GCAGC---ATCAGA------------------G---TCA---GCC------------GCAGCA-----------G---------------------CCGCAG---CAGCAGCAGC------ATCAGCAGCAGCA---------GCC---C---------CAGCAG------CAGCAGCAGC------------------CGCAGCAGCAGCACCAGC---CA---CTGCAGCAGCAAC-------------------------TGCAGCATACAGTGGGTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-------------------------TGCAGCATACAGTGGG..2111.0011000000
...............................................................................................................................................................................................................................................................................................................................................AGC---ATCAGA------------------G---TCA---GCC------------GCA.............................................................................................................................................................................................................................1911.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCACCAGC---CA---CTGC....................................................1911.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC-------------------------TGCAGCATACAGTGGGT.2611.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGCAGCAGC------ATCAGCAGCA......................................................................................................................................................24200.55118000210
...........................................................................................................................................................................................................................................................................................................CCAC------AGCA---------GC--AGCA---GCAGC---AT...............................................................................................................................................................................................................................................................................2140.2510010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAG---CAGCAGCAGC------ATCAG...........................................................................................................................................................2050.2011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC------ATCAGCAGCAGC....................................................................................................................................................20200.2042000020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAGCAGC------ATCAGCA.........................................................................................................................................................18200.1530000030
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGCAGCAGC------ATCAGCAGC.......................................................................................................................................................23200.1020200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAGCAGC------ATCAGCAGCA......................................................................................................................................................21200.1022000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC------ATCAGCAGCAGCA---------GC........................................................................................................................................22200.0510000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAGCAGC------ATCAGCAGCA......................................................................................................................................................23200.0510001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCAGCAGC------ATCAGCAGCAGCA---------..........................................................................................................................................25200.0510000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC------ATCAGCAGCAG.....................................................................................................................................................19200.0511000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGCAGCAGC------ATCAGC..........................................................................................................................................................20200.0510000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC------ATCAGCAGCAGCA---------GC........................................................................................................................................23200.0510100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC------ATCAGCAGC.......................................................................................................................................................18200.0510000010
.....................................................................................................................................................................................................................................................................................................................AGCA---------GC--AGCA---GCAGC---ATCAG............................................................................................................................................................................................................................................................................20200.0510001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGCAGCAGC------ATCAGCAGCAGC....................................................................................................................................................26200.0511000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAGCAGC------ATCAGCAGCAG.....................................................................................................................................................24200.0511000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC------ATCAGCAGCAGCA---------..........................................................................................................................................21200.0510000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC------ATCAGCAGCAG.....................................................................................................................................................20200.0511000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAGCAGC------ATCAGCAGCAGC....................................................................................................................................................25200.0510000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAGCAGC------ATCAGCAG........................................................................................................................................................21200.0511000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCAGCAGC------ATCAGCAGCA......................................................................................................................................................22200.0510000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAGCAGC------ATCAGCAGCAG.....................................................................................................................................................22200.0510000010

Generated: 05/18/2015 at 12:16 AM