dmo_1318

Name	Class	Family	Strand
Helitron-1_DVir	RC	Helitron	+
Homo6	DNA	hAT-Pegasus	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCACGTATTTCAAATTTTAAGAACTTCTGCTTTGGCAAATACACCTTTGAGCGTTGTTATGACGTTTTGAAAGCTCGACAACGTGATCAAGAATATATATACTTTGTGGGGTCTGCTAGGACTCCTGTGTTTTAAATACATATTTCCCATTTTCAATGCGTTCAGTCTCTAAAAAGTAAACATTCCTTTCATATTTTTCAGTTGATCCAGAAAATGCAGATGAAAGTGTTGGTGAAATATCCGTGCAGATA ************************************************((((((((..((.((((...))))))))))))))......((((.....((((((.(((((.(((...(((....((((((...))))))....)))((((...))))....))).))))).))))))...))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
...........................................................................................................................................ATATTTCCCATTTTCAATGCGTTCAGT.....................................................................................	27	0	1	1.00	1	1	0
.................TAAGAACTTCTGCTTTGGCAAATA..................................................................................................................................................................................................................	24	0	1	1.00	1	1	0
...............................................................................................................................................TTCCCATTTTCAATGCGTTCA.......................................................................................	21	0	13	0.08	1	1	0
..................................................................................................................................................................................................................AACAATCAGATGAAAGTGTT.....................	20	3	20	0.05	1	0	1

CGTGCATAAAGTTTAAAATTCTTGAAGACGAAACCGTTTATGTGGAAACTCGCAACAATACTGCAAAACTTTCGAGCTGTTGCACTAGTTCTTATATATATGAAACACCCCAGACGATCCTGAGGACACAAAATTTATGTATAAAGGGTAAAAGTTACGCAAGTCAGAGATTTTTCATTTGTAAGGAAAGTATAAAAAGTCAACTAGGTCTTTTACGTCTACTTTCACAACCACTTTATAGGCACGTCTAT ************************************************((((((((..((.((((...))))))))))))))......((((.....((((((.(((((.(((...(((....((((((...))))))....)))((((...))))....))).))))).))))))...))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V041 embryo	V056 head
...............................................................CAAACCTTTCCAGATGTTG.........................................................................................................................................................................	19	3	20	0.10	2	2	0	0
..............................................................................................................................................AAAGGGTAAAAGTTACGC...........................................................................................	18	0	13	0.08	1	1	0	0
.....................................................................................................................................................................AGGGAATTTTCATTTGTA....................................................................	18	2	14	0.07	1	0	1	0
..................TACATGAAGGCGAAACCGTTT....................................................................................................................................................................................................................	21	3	16	0.06	1	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6498:751072-751322 -	dmo_1318	GCACG-TATTTCAAATTTTAA--------------GA-ACTTCTGCTTTGGCAAAT-------------ACACCTTTGAGCGTTGT-----------------------TATGA-----CGTTTTGAA---AGCTCGACAACGTGATCAAGAATATATATACTTTGTGGGGTCTGCTAGGACTCCT---GTGTTTTAAATACATA---------------------TTTCCCA----------TTTTCAATGCGTTCAG---TCTCTAAAAAG--------------------------------TAAACATTCCT---------------------------TTCATATTT------------------------TTCAGTT-------GAT----CCAGAAAATGC-----------AGATGAAAG--TGTTG--GTGAAATATCCGTGCAGATA
droVir3	scaffold_12970:9044791-9045051 -		TATG--CATTTGATGTTGGAAGAAGAGGATTCAGGGTATCCGCTAGTCGGGAGCA-------------CCCGACTTGAACCTGGTT------------------------------------TATCGACCAGGCTGTTGAAACTGATCAAGATTCTATATACTTTATGAGGTCGAAGATAACTCCTTCTATGCGTTACTTATTTC-----ACGACAAAATTAT--AATACGTT-------CTGC----A--------AGAAGGGTCTAATAAATT-------------------------------------A-TCAGCTGATTAAGCTGATATATTAAAATAAG------C----------------------------------------------------------------------TATAGC--TATCA--AG-CAAGTATTCTGAAAAAA
droGri2	scaffold_14906:10899067-10899286 -		ACCTA-TATTCCAAATTTTAA--------------------TCTGCATGGTCATAC----------------ATTCGGA-----------CGGGCGGACGGACGGA--------CATGGCTATAACGATTCGGCTGTTGACCCTGATCAAGAATATATACACTTTACGGGGTCGGATATGCTTCCGTCTGCCTTTTACATACATT-----TGCACAAAACCAT--TATACACTTCTTACCC-ATTTTTAATGGGTTCAA---GGTATAAAAAC---------------------------------------TCCTA---------------------------ACTTA--------------------------------------------------------------------------------------------------------TTTT
droWil2	scf2_1100000004852:287734-287904 +		ATGG-------------------------------------------------------------------------------------------------------------------CGATTTGAACTCGTCTCGTCGTGCTGATCAAGAATATATATACTTTATATGGTCGGAGATGCTTCCTTCTATGCGTTGCACACTTT-----TGACCAAAATTAA--TATACCCTTT-----TTGC----A--------AG---GGTATAAAAATA-------------------------AA-------------A----------------------------------------------------------------------------------------------AATAAA-----------AAT-TCTAAAGGTAAAAAATCTGTGTATAAG
dp5	Unknown_group_189:10613-10779 -		-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATGGCGTCGGAAACGATTCCTTCTGGACGTTACACACATCCATTTTCACCACAAATCGAATATACCCCTA-TACTA-ATTTTT----AGTATCA---GGTATAAAAAAAC----------------------------------------------------------------------------------------------------------------------------AGGGACCGCAAATAAG-----------AGT-TATGA--ATGCAACGTTTATCTAAATA
droPer2	scaffold_95:115359-115519 +		-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATGGGGTCGAAAACGATTCCTTCTGGACGTTACATACATCCATTTTCTCCAAAAATCTAATATACCCCAA-TACTC-ATTTTG----AATATCG---GGTATAACAAATT--------------------------------------CCCC-----------------------------AAAGTA------------------------CAGAA---------TAAAGTTGC---GAGAGA-----------------------------ATAC------------AATA
droAna3	scaffold_13339:2981327-2981502 -		-----------------------------------------------------------------------------------------------------------------------------------------------TGACCATGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTTACTGTGTTGCAA------------------ATTAT--AATACCCT-------CTGC----A--------AG---GGTATAAATAT-----------------------------------------------------------------------G------TAGAAGCTCGTAAGAAAATGATCTGTCCAGCTGATGATTGAC----GCTGAAAATGT-----------ATATGAGAACGAATAA--ATGAAAAACTTG--TTGATA
droBip1	scf7180000395134:11407-11548 -		-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTTTACACTTT-----TGGACACAATTAT--AATACCCT-------CTGC----A--------AG---GGTATAAAAAAG-------------------------G------------TTTTA-----------------------------ATATGT------------------------GTT--TT-------CAT----CCATAAACTGCAAATAAG-----------A-----------------------------G
droKik1	scf7180000302469:606721-606867 +		AAAT------------TTTAA--------------AA-TATTT---------------TTTTT---------TCTTCG--------------------------GA--------CATGGCTAAATCGACTCGCGTGTTGATGCTGAACAAGAATATATATGATTTATAGGGTCGGAAATGATTTCTTCTAG----------------------------------------------------C----A--------AA---AATTTAAAAATT------------ACACTTTAAAATA------TAAATATTA--------------------------------------------------------------------------------------------------------------------------------------------CTT
droFic1	scf7180000453094:11962-12098 +		-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATAGGGTCTGAGGTGTCTCCTTTACTGCGTTGCAAACTTC-----TGGCTGAAATTAT--ATTACCCTT--TGCTCTGC----A--------AG---GGTATAAAAAGC-------------------------GTAAAT-----ATTTTTA---------------------------TCTTT---------------------------------------------------------------------------------TCTTG--------------AGTT-AAT
droEle1	scf7180000491124:6329-6488 -		-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTAATAGGCTCGGAGATGTCTCCTTCACTGCGTTGCAAACTTC-----TGACTGAAATTAT--AATACCCT-------CTGC----A--------AG---GGTATAAAAAGAT-------------------------------------A-ACT-------ATTCTGTTAT---------TTAATTTTT------------------------TTTAGTT-------C-----TTC---GACAGGTAGTAAT-----------G----------GTTAA-----------ATAT
droRho1	scf7180000779985:590126-590299 -		-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTT-----TGACCAAAATTAT--AATACCCT-------CTGC----A--------AG---GGTATAAAAACAC------------------------GC-------------TT---------------------------TTCAAAATT------------------------TTTATTT-------TAT-TC-T---------CTAATAAGATGTACACAAAAT--TCTTA---TTTTTAATGCGAGTTGATA
droBia1	scf7180000301299:29422-29555 +		GACG----------------------------------------------------------------------------------------------------------------------------------------TTGTGGTCAAGAATATATATACTTTAC--------------------------TTTGCAAACTTC-----TGACTGAAATCAT--TATACCCT-------CTGC----A--------AG---GGTATAAAAAGGT-------------------------------------G-CGC-------A------------------TTCATATTG------------------------CCCATTC-------AAT----TCGAAAAGTGCCAAAAAG------ATTA----------------------------AAGT
droTak1	scf7180000413127:32860-33029 +		-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACCTTATGGGGTCGGAAACGTCTCCTTCACTGCGTTACAAACTTC-----TGACCAAAATTAT--AATACCCT-------CTGC----A--------AG---GGTATAAAAAAC-------------------------AA-------------TA---------------------------TTCAAAATT------------------------TTGTT---------TAT-TT-TCTAATAATGC-----------ACAAAAAAA--TTTTA--ATATAATATCTTTTAAACTT
droEug1	scf7180000409282:21092-21284 -		C------------------------------------------------------------------------------------------------------------------------------------------ATCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTAAATACTTT-----TCAACGAA------------------------------------TAACG---GGTGTAAAATAGTATGCAAACAGTACAC----------------------A-AAT-------AT------------------T------TAGTGACCATTAATTATATATT---TTAATTT-------CAA----TCAATTAATGA------GATATAGATTTAAT--TGTGA---TATACAATTTGTG---CAG
dm3	chr4:835934-836061 +		ATAAG-TGT---GAATTTAAA--------------AT-TCCTTTGCTCGTAAATATGTATGCTTTAAATCAATTTTCCAGCTTTTATAGTTCCTG---------ATATCGAT-------------------ATTTTTATATCCAGATCAATAATTTATATAATTTATAGGGTCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2l:23205381-23205487 -		ATCT-------------------------------------------CTAGAATCTGTATGTTGAATATCAACCTTCGAGCTTTTATAGT------------------------------------TCCTGAGATCTCGATCTAGATCAAGAATGTATATACTTTATATAGTCGGAAATGCTTCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_42:253804-253989 +		TCATAATTTTTCAAATTTTAA--------------AA-TTGTT------TCAAAATATAAGT---GTGACCGTTTTAGTCGTTTTTTTGGTATACGAACAGACG-A--------CCAGGCTAGATCGACTCGGCTCTTGATCCTGATCAAGAATATGTATACTCTATATAGTCGGGAACGCTTCCTTCTGCCTGTTACATACTTT-----TCAACGAATCTAG--T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	4:1242279-1242418 +		-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACCTT--------------------TATACCCTTT-TACTCTAC----G---AGTAACG---GGTATTAAAATGT--------------------------------------CTTG-----------------------------AGATTT------------------------TTTTT---------TACATTTTT---GTTAGT-----------------------------CTA----------GT-AAAT
droEre2	scaffold_4845:2618347-2618529 +		AAACA-TTTTTCA--------------------------------------AAAGTGTAGGC---GTGTCAGTTTTGGGCGGTTTGTAGGCGTTG---------GAGCTGGCAA-----CGTTCTGA---------AATAACCTGAATAAGAATATATATACTTTATATGGTCGGTACAGAGTTTT----------ACATATAACTTGTAAATTAATAATTTTTAAATACCCTCT-TACAT-A--------------------------------------------------------------TGAACATAT-------------------------------CTTT--------------------------------------------------------------------------------------------------------TTTA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GCACG-TATTTCAAATTTTAA--------------GA-ACTTCTGCTTTGGCAAAT-------------ACACCTTTGAGCGTTGT-----------------------TATGA-----CGTTTTGAA---AGCTCGACAACGTGATCAAGAATATATATACTTTGTGGGGTCTGCTAGGACTCCT---GTGTTTTAAATACATA---------------------TTTCCCA----------TTTTCAATGCGTTCAG---TCTCTAAAAAG--------------------------------TAAACATTCCT---------------------------TTCATATTT------------------------TTCAGTT-------GAT----CCAGAAAATGC-----------AGATGAAAG--TGTTG--GTGAAATATCCGTGCAGATA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................ATA---------------------TTTCCCA----------TTTTCAATGCGTTCAG---T..................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..................TAA--------------GA-ACTTCTGCTTTGGCAAAT-------------A...................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................TTCCCA----------TTTTCAATGCGTTCA.......................................................................................................................................................................................................	21	13	0.08	1	1	0	0	0	0	0

droVir3

TATG--CATTTGATGTTGGAAGAAGAGGATTCAGGGTATCCGCTAGTCGGGAGCA-------------CCCGACTTGAACCTGGTT------------------------------------TATCGACCAGGCTGTTGAAACTGATCAAGATTCTATATACTTTATGAGGTCGAAGATAACTCCTTCTATGCGTTACTTATTTC-----ACGACAAAATTAT--AATACGTT-------CTGC----A--------AGAAGGGTCTAATAAATT-------------------------------------A-TCAGCTGATTAAGCTGATATATTAAAATAAG------C----------------------------------------------------------------------TATAGC--TATCA--AG-CAAGTATTCTGAAAAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................TGGAAGAAGAGGATTCAGGGTATC.................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.21	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................ACTTTATGAGGTCGAAGAT......................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGGAAGAAGAGGATTCAGGGTATCC................................................................................................................................................................................................................................................................................................................................................................................................................................	25	19	0.16	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTGATGTTGGAAGAAGAGGATTCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................	26	16	0.13	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GTTGGAAGAAGAGGATTCAGGGTATCC................................................................................................................................................................................................................................................................................................................................................................................................................................	27	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTTGATGTTGGAAGAAGAGGATTCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................	27	16	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TATG--CATTTGATGTTGGAAGAAGAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GATGTTGGAAGAAGAGGATTCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GATGTTGGAAGAAGAGGATTCAGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..TG--CATTTGATGTTGGAAGAAGAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTTGATGTTGGAAGAAGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TTCAGGGTATCCGCTAGTCGGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTGATGTTGGAAGAAGAGGATTCATT......................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ACCTA-TATTCCAAATTTTAA--------------------TCTGCATGGTCATAC----------------ATTCGGA-----------CGGGCGGACGGACGGA--------CATGGCTATAACGATTCGGCTGTTGACCCTGATCAAGAATATATACACTTTACGGGGTCGGATATGCTTCCGTCTGCCTTTTACATACATT-----TGCACAAAACCAT--TATACACTTCTTACCC-ATTTTTAATGGGTTCAA---GGTATAAAAAC---------------------------------------TCCTA---------------------------ACTTA--------------------------------------------------------------------------------------------------------TTTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

ATGG-------------------------------------------------------------------------------------------------------------------CGATTTGAACTCGTCTCGTCGTGCTGATCAAGAATATATATACTTTATATGGTCGGAGATGCTTCCTTCTATGCGTTGCACACTTT-----TGACCAAAATTAA--TATACCCTTT-----TTGC----A--------AG---GGTATAAAAATA-------------------------AA-------------A----------------------------------------------------------------------------------------------AATAAA-----------AAT-TCTAAAGGTAAAAAATCTGTGTATAAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................TATATATACTTTATATGGTCGGAGA.......................................................................................................................................................................................................................................................................................	25	20	0.25	5	0	0	0	5	0
............................................................................................................................................................................................TATGCGTTGCACACTTT-----TGACCAAAA..............................................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	4	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGTAAAAAATCTGTGTATAAG	25	20	0.20	4	0	0	0	4	0
...............................................................................................................................ACTCGTCTCGTCGTGCTGATC.....................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	4	0	0	0	0
............................................................................................................................TGAACTCGTCTCGTCGTGCTGA.......................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-----------AAT-TCTAAAGGTAAAAAATCTGTG......	28	20	0.10	2	0	2	0	0	0
...................................................................................................................................................................TTATATGGTCGGAGATGCTTCCT...............................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	2	0
..............................................................................................................................AACTCGTCTCGTCGTGCTGAT......................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................TTCCTTCTATGCGTTGCACACTTT-----TG.....................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.....................................................................................................................................CTCGTCGTGCTGATCAAGAA................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1
.........................................................................................................................ATTTGAACTCGTCTCGTCGTGCTGATC.....................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0

dp5

-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATGGCGTCGGAAACGATTCCTTCTGGACGTTACACACATCCATTTTCACCACAAATCGAATATACCCCTA-TACTA-ATTTTT----AGTATCA---GGTATAAAAAAAC----------------------------------------------------------------------------------------------------------------------------AGGGACCGCAAATAAG-----------AGT-TATGA--ATGCAACGTTTATCTAAATA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................TGGCGTCGGAAACGATTCCTTCTGG..........................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TCACCACAAATCGAATATACCCCTA-TAC..........................................................................................................................................................................................................................	28	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TCACCACAAATCGAATATACCCCTA-.............................................................................................................................................................................................................................	25	9	0.22	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................TTATGGCGTCGGAAACGATTC.................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................ATATATATACTTTATGGCGTC............................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GAAACGATTCCTTCTGGAC........................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GATTCCTTCTGGACGTTACA..................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTTCACCACAAATCGAATATACC..................................................................................................................................................................................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ATTCCTTCTGGACGTTACACACATCCATT........................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ACACATCCATTTTCACCAC................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTACACACATCCATTTTCACC..................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATGGGGTCGAAAACGATTCCTTCTGGACGTTACATACATCCATTTTCTCCAAAAATCTAATATACCCCAA-TACTC-ATTTTG----AATATCG---GGTATAACAAATT--------------------------------------CCCC-----------------------------AAAGTA------------------------CAGAA---------TAAAGTTGC---GAGAGA-----------------------------ATAC------------AATA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................TCTAATATACCCCAA-TACTC-ATT....................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0
...............................................................................................................................................................................................................................AATATACCCCAA-TACTC-ATTTTG----A............................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................TAATATACCCCAA-TACTC-ATTTTG----AA...........................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0
...........................................................................................................................................................................................CTGGACGTTACATACATC............................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................TAATATACCCCAA-TACTC-ATTTTG----AAA..........................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................TCGAAAACGATTCCTTCTGGACG.......................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1

droAna3

-----------------------------------------------------------------------------------------------------------------------------------------------TGACCATGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTTACTGTGTTGCAA------------------ATTAT--AATACCCT-------CTGC----A--------AG---GGTATAAATAT-----------------------------------------------------------------------G------TAGAAGCTCGTAAGAAAATGATCTGTCCAGCTGATGATTGAC----GCTGAAAATGT-----------ATATGAGAACGAATAA--ATGAAAAACTTG--TTGATA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................TATATACTTTATAGGGTCGGAG........................................................................................................................................................................................................................................................................................	22	20	0.15	3	3	0	0	0	0	0
..............................................................................................................................................................ATACTTTATAGGGTCGGAGAT......................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droBip1

-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTTTACACTTT-----TGGACACAATTAT--AATACCCT-------CTGC----A--------AG---GGTATAAAAAAG-------------------------G------------TTTTA-----------------------------ATATGT------------------------GTT--TT-------CAT----CCATAAACTGCAAATAAG-----------A-----------------------------G	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAT------------TTTAA--------------AA-TATTT---------------TTTTT---------TCTTCG--------------------------GA--------CATGGCTAAATCGACTCGCGTGTTGATGCTGAACAAGAATATATATGATTTATAGGGTCGGAAATGATTTCTTCTAG----------------------------------------------------C----A--------AA---AATTTAAAAATT------------ACACTTTAAAATA------TAAATATTA--------------------------------------------------------------------------------------------------------------------------------------------CTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATAGGGTCTGAGGTGTCTCCTTTACTGCGTTGCAAACTTC-----TGGCTGAAATTAT--ATTACCCTT--TGCTCTGC----A--------AG---GGTATAAAAAGC-------------------------GTAAAT-----ATTTTTA---------------------------TCTTT---------------------------------------------------------------------------------TCTTG--------------AGTT-AAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTAATAGGCTCGGAGATGTCTCCTTCACTGCGTTGCAAACTTC-----TGACTGAAATTAT--AATACCCT-------CTGC----A--------AG---GGTATAAAAAGAT-------------------------------------A-ACT-------ATTCTGTTAT---------TTAATTTTT------------------------TTTAGTT-------C-----TTC---GACAGGTAGTAAT-----------G----------GTTAA-----------ATAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTT-----TGACCAAAATTAT--AATACCCT-------CTGC----A--------AG---GGTATAAAAACAC------------------------GC-------------TT---------------------------TTCAAAATT------------------------TTTATTT-------TAT-TC-T---------CTAATAAGATGTACACAAAAT--TCTTA---TTTTTAATGCGAGTTGATA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GACG----------------------------------------------------------------------------------------------------------------------------------------TTGTGGTCAAGAATATATATACTTTAC--------------------------TTTGCAAACTTC-----TGACTGAAATCAT--TATACCCT-------CTGC----A--------AG---GGTATAAAAAGGT-------------------------------------G-CGC-------A------------------TTCATATTG------------------------CCCATTC-------AAT----TCGAAAAGTGCCAAAAAG------ATTA----------------------------AAGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACCTTATGGGGTCGGAAACGTCTCCTTCACTGCGTTACAAACTTC-----TGACCAAAATTAT--AATACCCT-------CTGC----A--------AG---GGTATAAAAAAC-------------------------AA-------------TA---------------------------TTCAAAATT------------------------TTGTT---------TAT-TT-TCTAATAATGC-----------ACAAAAAAA--TTTTA--ATATAATATCTTTTAAACTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

C------------------------------------------------------------------------------------------------------------------------------------------ATCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTAAATACTTT-----TCAACGAA------------------------------------TAACG---GGTGTAAAATAGTATGCAAACAGTACAC----------------------A-AAT-------AT------------------T------TAGTGACCATTAATTATATATT---TTAATTT-------CAA----TCAATTAATGA------GATATAGATTTAAT--TGTGA---TATACAATTTGTG---CAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATAAG-TGT---GAATTTAAA--------------AT-TCCTTTGCTCGTAAATATGTATGCTTTAAATCAATTTTCCAGCTTTTATAGTTCCTG---------ATATCGAT-------------------ATTTTTATATCCAGATCAATAATTTATATAATTTATAGGGTCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................ATAGTTCCTG---------ATATCGAT-------------------ATTTTTATA.............................................................................................................................................................................................................................................................................................................................	27	1	69.00	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46	0	1	2	12	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TTTTATAGTTCCTG---------ATATCGAT-------------------ATT...................................................................................................................................................................................................................................................................................................................................	25	1	59.00	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	1	0	2	0	0	1	8	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	6	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	1	1	10	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ATAGTTCCTG---------ATATCGAT-------------------ATTTTTA...............................................................................................................................................................................................................................................................................................................................	25	1	36.00	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	8	0	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TTTTATAGTTCCTG---------ATATCGAT-------------------AT....................................................................................................................................................................................................................................................................................................................................	24	1	28.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TTTTATAGTTCCTG---------ATATCGAT-------------------ATTTT.................................................................................................................................................................................................................................................................................................................................	27	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	4	0	2	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................TTTATAGTTCCTG---------ATATCGAT-------------------ATTTT.................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CTTTTATAGTTCCTG---------ATATCG...........................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TTTATAGTTCCTG---------ATATCGA..........................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TCCAGCTTTTATAGTTCCTG---------A................................................................................................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TTTATAGTTCCTG---------ATATC............................................................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TTTTATAGTTCCTG---------ATAT.............................................................................................................................................................................................................................................................................................................................................................	18	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATCT-------------------------------------------CTAGAATCTGTATGTTGAATATCAACCTTCGAGCTTTTATAGT------------------------------------TCCTGAGATCTCGATCTAGATCAAGAATGTATATACTTTATATAGTCGGAAATGCTTCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................ATAGT------------------------------------TCCTGAGATCTCGATCTAGA.......................................................................................................................................................................................................................................................................................................................	25	1	43.00	43	0	0	3	0	0	0	10	9	13	6	2	0	0	0	0	0	0
................................................TAGAATCTGTATGTTGAATATCAACC...............................................................................................................................................................................................................................................................................................................................................................................................	26	1	12.00	12	0	0	0	0	0	0	0	5	2	5	0	0	0	0	0	0	0
.........................................................................................................................................................TGTATATACTTTATATAGTCGGAAATGC....................................................................................................................................................................................................................................................................................	28	1	8.00	8	0	0	0	0	0	0	2	1	2	3	0	0	0	0	0	0	0
................................................TAGAATCTGTATGTTGAATATCAACCTT.............................................................................................................................................................................................................................................................................................................................................................................................	28	1	7.00	7	0	0	0	0	0	0	0	3	0	4	0	0	0	0	0	0	0
ATCT-------------------------------------------CTAGAATCTGTATGTTGAATA.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................TATACTTTATATAGTCGGAAATGCT...................................................................................................................................................................................................................................................................................	25	3	3.67	11	0	0	0	0	0	0	3	4	2	2	0	0	0	0	0	0	0
.................................................................................................................................TGAGATCTCGATCTAGATCAAGAATG..............................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0
.................................................................................................................................TGAGATCTCGATCTAGATCAAGAATGT.............................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0
........................................................GTATGTTGAATATCAACCTTCGAGC........................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................TGAGATCTCGATCTAGATCAAGAA................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
......................................................................................................................................................GAATGTATATACTTTATATAGTCGGA.........................................................................................................................................................................................................................................................................................	26	2	2.00	4	0	0	0	0	0	0	0	2	0	1	0	0	1	0	0	0	0
..............................................................................................................................TCCTGAGATCTCGATCTAGATCAAGAA................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TGTATATACTTTATATAGTCGGAAATGCT...................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TCTAGATCAAGAATGTATATACTTT....................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.................................................................................................................................TGAGATCTCGATCTAGATCAAGA.................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.TCT-------------------------------------------CTAGAATCTGTATGTTGAATA.....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................ATAGT------------------------------------TCCTGAGATCTCGATCTAGATCAAG..................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................TGAGATCTCGATCTAGATCAAGAATGTA............................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................ATAGT------------------------------------TCCTGAGATCTCGATCTA.........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................ATGTATATACTTTATATAGTCGGA.........................................................................................................................................................................................................................................................................................	24	4	1.00	4	0	0	0	0	0	0	2	1	0	0	0	0	1	0	0	0	0
.....................................................................................ATAGT------------------------------------TCCTGAGATCTCGATCTAGATC.....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................ATCTGTATGTTGAATATCAACCTT.............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................ATAGT------------------------------------TCCTGAGATCTCGATCTAG........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................CTGAGATCTCGATCTAGATCAAGAA................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................TATAGT------------------------------------TCCTGAGATCTCGATCTAGA.......................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TAGAATCTGTATGTTGAATATCAACCT..............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................TTATAGT------------------------------------TCCTGAGATCTCGATCTAGA.......................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GATCTCGATCTAGATCA....................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...T-------------------------------------------CTAGAATCTGTATGTTGAATATCAACCTT.............................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TGTATATACTTTATATAGTCGGAAATGG....................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................TTTATAGT------------------------------------TCCTGAGATCTCGATCTAGG.......................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TGTATGTTGAATATCAACCTTCGAGCTT......................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TCCTGAGATCTCGATCTAGATCAAG..................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................TGTATATACTTTATATAGTCGGAAATG.....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................TGAGATCTCGATCTAGATCAAGAAT...............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................GTATGTTGAATATCAACCTTCGAGCTT......................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TACTTTATATAGTCGGAAATGCT...................................................................................................................................................................................................................................................................................	23	3	0.67	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................ATATACTTTATATAGTCGGAAATGCTT..................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GAATGTATATACTTTATATAGTCGG..........................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................ATGTATATACTTTATATAGTCGGAAA.......................................................................................................................................................................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
...............................................................................................................................................................TACTTTATATAGTCGGAAATGCTTC.................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATATACTTTATATAGTCGGAAATGCT...................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................TATACTTTATATAGTCGGAAATGC....................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................ATGTATATACTTTATATAGTCGGAA........................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TGTATATACTTTATATAGTCGGAAA.......................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................TTTTATAGT------------------------------------TCCTGAGATCTCGAT............................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................ATGTATATACTTTATATAGTCGGAT........................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................TCAAGAATGTATATAC.......................................................................................................................................................................................................................................................................................................	16	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................GT------------------------------------TCCTGAGATCTCGAT............................................................................................................................................................................................................................................................................................................................	17	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................TATATACTTTATATAGTCGGA.........................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................TATATACTTTATATAGTCGGAT........................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................................................................................................TATATACTTTATATAGTCGGAAATT.....................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................TTATAGT------------------------------------TCCTGAGATCTCGATA...........................................................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................ATATACTTTATATAGTCGGAT........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TAGT------------------------------------TCCTGAGATCTCG..............................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................TATAGT------------------------------------TCCTGAGATCTCGA.............................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

TCATAATTTTTCAAATTTTAA--------------AA-TTGTT------TCAAAATATAAGT---GTGACCGTTTTAGTCGTTTTTTTGGTATACGAACAGACG-A--------CCAGGCTAGATCGACTCGGCTCTTGATCCTGATCAAGAATATGTATACTCTATATAGTCGGGAACGCTTCCTTCTGCCTGTTACATACTTT-----TCAACGAATCTAG--T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................TCGACTCGGCTCTTGATCCTGATC.....................................................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	0	2	0
............................................................................................................................TCGACTCGGCTCTTGATCCTGATCAAGA.................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	1	0	0	0
............................................................................................................................TCGACTCGGCTCTTGATCCTGA.......................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	1	0

droYak3

-----------------------------------------------------------------------------------------------------------------------------------------------TGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACCTT--------------------TATACCCTTT-TACTCTAC----G---AGTAACG---GGTATTAAAATGT--------------------------------------CTTG-----------------------------AGATTT------------------------TTTTT---------TACATTTTT---GTTAGT-----------------------------CTA----------GT-AAAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................TTCTGCCTGTTACATACCTT--------------------TATACCC.................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TACATACCTT--------------------TATACCCTTT-.............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTCCTTCTGCCTGTTACATACCTT--------------------TA......................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTCCTTCTGCCTGTTACATACC..............................................................................................................................................................................................................................................................	22	20	0.35	7	0	0	7	0	0	0	0	0	0	0	0
....................................................................................................................................................................TATATGGTCGGAAACGCTTCCTTCTGCC.........................................................................................................................................................................................................................................................................	28	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTCCTTCTGCCTGTTACATACCTT--------------------T.......................................................................................................................................................................................................................................	25	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CTTCTGCCTGTTACATACC..............................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................AACGCTTCCTTCTGCCTGTT.....................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATACCCTTT-TACTCTAC----G---AGTAACG---G..................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TTCTGCCTGTTACATACCTT--------------------T.......................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TATGGTCGGAAACGCTTCCTTC.............................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

AAACA-TTTTTCA--------------------------------------AAAGTGTAGGC---GTGTCAGTTTTGGGCGGTTTGTAGGCGTTG---------GAGCTGGCAA-----CGTTCTGA---------AATAACCTGAATAAGAATATATATACTTTATATGGTCGGTACAGAGTTTT----------ACATATAACTTGTAAATTAATAATTTTTAAATACCCTCT-TACAT-A--------------------------------------------------------------TGAACATAT-------------------------------CTTT--------------------------------------------------------------------------------------------------------TTTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_1318

scaffold_6498:751122-751272 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.3	-26.2	-26.2