dmo_1314

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCTTGAGCCGAAGCTCGATCAAAATCGCTTAAAGTCATGTGAAGAAACAAGTAAGCAGTATTTTGTAATACTTGTACTTTTTAATGAATATAATTTAAATTGCATAAAAATATTTTGTCTTAAGTTCCAAAAAAACGTGGCCGCAAAAAGGGCTCCAAAGGTGTAGATTCACTAATTGCGAAAGAATCAAGTCTATCGCAGCAAATATTCTTCGGATCTGGTGTTAAAAAAGTAAAAACTACAAAGGAACT ************************************************.((((((((((((((((((..(((((.((......)).))))).....))))))...))))))..)).))))................((((........)))).....((((......))))..((((((.(((......))).))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V056 head	V041 embryo
....................................................................................................................................................................AGATTCACTAATTGCGAAAG...................................................................	20	0	1	1.00	1	1	0	0	0
.....................................................................................................................................................GGGCTCCAAAGGTGTAGA....................................................................................	18	0	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................ATCGCAGCAAATATTCTTCGGATCT................................	25	0	1	1.00	1	1	0	0	0
.................ATCAAAATCGCTTAAAGTCATGT...................................................................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................GAATCAAGTCTATCGCAGCA................................................	20	0	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................ATCAAGTCTATCGCAGCAAA..............................................	20	0	1	1.00	1	0	1	0	0
..................................................................ATTACTTGTACTTTTTAA.......................................................................................................................................................................	18	1	3	0.33	1	1	0	0	0
..................ACAAAATCGCTTAGAGTCAG.....................................................................................................................................................................................................................	20	3	11	0.09	1	0	0	1	0
.................................................................................................................................................................................................TATGGCAGGAAATATTCTTG......................................	20	3	18	0.06	1	1	0	0	0
...................CAAGATCGCTTAAACTCGTG....................................................................................................................................................................................................................	20	3	19	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6498:619487-619737 -	dmo_1314	G--CTTGAGCCGAAG------------------CTC-----GATCAAAATCGCTTAA----AGT------------CATGTGAAGAAACAAGTAAGCAGTATTTTGTAAT------------ACTTGTACT---------TTTTA------ATGAATATAATTTAAATTGCAT--AA--------------------------------AAATA------TTTTGTCT------TAAGTTCCAAAAAAACGTGGCCGCAAAAAGGGCTCCAAAGGTGTAGATTCACTAATTGCGAAAGA---AT---CAAGTCTATCGCAGCAAATATTCTTCGG------ATCTGGTGTTAAAAAAGTAAAAACTACAAAGGAACT
droVir3	scaffold_13052:1596091-1596345 -		G--CTAGAGGCAAAG------------------CCGG-----GTCAAAATAATTCAA----AGG------------CATCTACCGAAGCAAGTAAGCAACAATTTTTAACATCT------------------------------------------TTCAAGTCAAATGATAGTAACAAG---TT-----GGA-----AT-G-CCATGAAAACA------TTCTCTCT------CAAGCCCCTAAAAAGCGCGGCCGGAAGAAGGGCTCCAAAGGTGTCGATTCACTTATTGCCAAGGA---GT---CAAGTCTTTCCCAGCAAATTTTGTTTGGT------TCTGGTGTTAAAAAAGTAAAAACCACAAAAGAACT
droGri2	scaffold_14822:605872-606102 -		G--CAATCGATTC-------------------------------------------CCATTAGT-------CATA----ATGAG----------GGTAGCAA-----------TAAACAGATGC------C---------AGCTG------------------TAAAC---AAGCCCCAAGATTA-----CCA-----AC-G-CAGCGAGAATA------TTCTCTCT------CAAGTTCCTAAAAAACGTGGTCGCAAAAAGGGCTCGAAAGGCGTCGATTCTCTCATTGCCAAGGA---ATCCTCCAGTTTGTCGCAGCAAATATTTTTCAA------CTCCGGCGTGAAAAAGGTGAAAACTACCAAGGAACT
droWil2	scf2_1100000004943:1717609-1717928 -		A--CGCCA-----ACGCCATCTCTATTTCCCTTTGAGGAACGACG----------AA----AGG------------CACTTGAGGAAGCTGGGAAGCAACAGATTGAAATTTCTGTTCTAGTACC---TCCCTCAACAACTACGTCGTCATTAGGGAACGAACAGAGCAACAGAAGCAACGATTTTATTGAGGGAGGAGCCGCCAGCAGGGGCA------TTCTGCCT------CAAATTCCAAAGAAGCGTGGGCGGAAAAAGGGTTCAAAGGGCGTGGATTCGCTAATAGCGAAGGA---ATCGTCAAGCCTATCGCAACAAATATTTTTTGGT------TCTGGCGTCAAAAAAGTTAAAACTACAAAGGAACT
dp5	Unknown_group_8:166363-166646 +		G--T-----------------------------CGAAGAACGCCG-----------------AAAATCCGATAAAATCGATGA---TTCTATTAGGCAGCAAATTGCAACATCTATACAAATGCCAATGCC---------TTCGATTGGGTTGGGCCACGAGTCAAATAGTAGGACTGAATATTT-----GGA----------------AAATTCA---TCGAAGTCT------CAAGTTCCTAAAAAACGTGGTCGGAAGAAAGGCTCAAAAGGCGTGGATGCTGTAATTGCTAAGGA---ATCGTCGAGCCTTTCTCAGCAAATTTTTTTTGGCGTTGGCTCTACGGTGAAAAAGGTAAAGACCACCAAAGAACT
droPer2	scaffold_42:602269-602552 -		G--T-----------------------------CGAAGAACGCCG-----------------AAAATCCGATAAAATCGATGA---TTCTATTAGGCAGCAAATTGCAACATCTATACAAATGCCAATGCC---------TTCGATTGGGTTGGGCCACGAGTCAAATAGTAGGACTGAATATTT-----GGA----------------AAATTCA---TCGAAGTCT------CAAGTTCCTAAAAAACGTGGTCGGAAGAAAGGCTCAAAAGGCGTGGATGCTGTAATTGCTAAGGA---ATCGTCGAGCCTTTCTCAGCAAATTTTTTTTGGCGTTGGCTCTACGGTGAAAAAGGTAAAGACCACCAAAGAACT
droAna3	scaffold_13767:869812-870051 +		T--CAA-----------------------------GG-------------------------AAAATCAGAGAAA---------------------------------ATCGCTCTTCAAATACACAGGCC---------CGTTGACGCTTAATGTCCGGTTTTAAAA---AAGACTGAATTATT-----CCA----------------TAAAGCT---TCCGACTCA------CATGGCTACAAAAAACGTGGTCGTAAAAAGGGATCTAGAGGTGTTGATGCTGTAATTTCTAAAGA---GTCGTCTAGCTTGTGCCAGCAAATCTTCTTAGGC---AGCTCGACAGTAAATAAAGTCAAGACGACAAAGGAACT
droBip1	scf7180000392135:8217-8487 +		A--TAC---ACAAAA------------------TTCG-----G-------------------AAAAATTAAATGATTTTTATA---AGCA-------TAAACA-ATCAATCGCTTCTCAAATACACTTGCC---------AGTTGAGGCCCTTTGTCCTGTTTCAAAC---ACGACTGAATTATT-----AAA----------------TGACACA---ACCGAGTCA------CGTTCCCAAAAAAAACGTGGTCGTAAAAAGGGATCTAGAGGTGTGGATGCTGTAATTTCTAAAGA---GTCGTCTAGCTTATGCCAGCAAATCTTCTCAGGC---AGCTCTGCTGTTAAAAAAGTCAAAACAACTAAAGAACT
droKik1	scf7180000302543:43814-44066 -		A--TAT-GGAAGA--------------------------TAGCAG----------CA----GGAAAATTGAGACTACAATAGA---TGCTAGTATGCATCAAGCTG---------------------TACT---------TGTGGGCA------G---------------------CAATGATTT-----GGA----------------GAACACAACGTCTCAGTCTCGTTTGCATATTCCAAAAAAACGCGGTCGAAAAAGAGGCTCTAAAGGGGTTGACTCTTTGATAACCAAGGATACATCGGCTAGCCTCTCCCAACAAATCTTCTTTGGTCAAGGCTCGACTGTGAAAAAGGTGAAGACCACTAAAGAATT
droFic1	scf7180000454040:395313-395578 -		A--CTGTCGAGGACA------------------TAAA-------------------------AAAAATGGATAATGTAATTGA---TTTA---AAGCTACACAGTGCAT---------------CCATGCC---------TGATCCCGGAACGGGTTGTGATCCAAATAGTAGGCATAGATATTT-----AGA----------------AAACGCC---TCTCAGTCT------CAAATTCCAAAAAGGCGTGGCAGGAAAAAAGGATCAAAAGGCGTGGACGCAGTTATTGCCAAGGA---GTCCTCTAGCCTGTCTCAGCAGATTTTCTTTGGC---GGTTCAACTGTTAAAAAGGTGAAGACCACCAAGGAGCT
droEle1	scf7180000491238:404413-404695 +		CAACTATCGAGGAGG------------------TGAG-------------------------GAAATCTGAAAATGTAATTGA---TACG---CGGTTGCACAATTTAAGTGCAAGTCAGATGCCTATGAC---------TTCTGTCGGTGTAGGGTATGATCCAAATAGTAGGCCTGAGTATTT-----GGA----------------AAACTCT---TCTCATTCT------CAAATTCCAAAGAGACGTGGAAGAAAGAAAGGATCAAAAGGTGTGGACGCTATTATTGCCAAGGA---GTCATCTAGCTTGTCTCAACAAATTTTGTTTGGT---GGCTCAACTGTTAAAAAGGTAAAGACTACAAAAGAACT
droRho1	scf7180000779685:71615-71890 +		A--G-----AGGAGG------------------TGAG-------------------------GAAACCTGAAAATGTAATTGA---TGCG---CGGTTACACAATGTAACTGCAACTCAGATGCCTATGCC---------TACTGCTGGTATAGGGTATGATCCAAATAGCAGGCCTGAGTATTT-----GGA----------------AAACTTT---TGTCAATCT------CAAATTCCAAAAAGACGTGGAAGGAAAAAAGGATCTAAAGGTGTGGACGCTGTTATTGCCAAGGA---GTCATCGAGTTTGTCTCAGCAAATATTTTTTGGT---GGCTCAACTGTTAAAAAGGTAAAGACAACCAAGGAACT
droBia1	scf7180000301495:729407-729687 -		A--CTGTCGAGGATG------------------TAAG-------------------------AAAGTCTGAAAATGTAATAAA---TGCT---CGATTAAACAATGCAACTGCGAATCAGATGCCTACTCC---------TGTAACAAGTATGGGTTACGATACAAATTGTAGAACTGAGTATTT-----GGA----------------AAACACC---TCCCAGTCT------CAAATTCCAAAAAGACGGGGTAGAAAAAAAGGATCGAAAGGTGTGGACGCACTTATCGCCAAGGA---GTCTTCTAGCCTGTCTCAACAAATATTTTTTGGT---GGTTCAACTGTTAAAAAGGTTAAAACCACAAAGGAACT
droTak1	scf7180000415288:161930-162210 -		A--CTGTCGAAGAAG------------------TAAG-------------------------AAAGTCCGAGAATTTATTTGA---TGCT---CGATTACACAATGCATCTGCTATTCAGATGGCAATGCC---------TTCTTCCGGCATGGGCTATGATCCAAATAGTAGACCTGAGTATTT-----GGA----------------AAACTCC---TCCCAGTCT------CAAATTCCAAAAAGACGTGGTAGAAAAAAAGGATCAAAAGGTGTGGACGGTCTTATCGCCAAGGA---GTCATCTAGCCTGTCGCAACAAATATTTTTTGGG---GGCTCAACCGTTAAAAAAGTAAAGACCACGAAGGAACT
droEug1	scf7180000408984:398529-398777 +		G--G-----------------------------TTAG-------------------------GAAACCTGAAAATGTGTTTGA---TG------------------------CAATTCAGATGCCTACGCC---------TACTGCTGGAATAGGCTTTGATCAAAATAGTAGGACTGGGTATTT-----GGA----------------AAGCGCT---TCACAGTCC------CAAATGCCAAAAAGGCGTGGAAGAAAAAAAGGATCAAAAGGTGTAGACGCTCTGATTGCTAAGGA---GTCATCTAGCCTGTCTCAACAAATATTTTTTGGT---GGATCAACTGTTAAGAAGGTGAAGACTACGAAAGAACT
dm3	chr4:804059-804339 -		A--CTGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAACATTTATTTGA---TGCT---CAGTTAACTAATACAACCGCAAATCAGATACCTATGTC---------CGCTGTCAGCATCGGCTATGAGTCGAATACTAGACATGAGTATTT-----GGA----------------AAGCGAT---TCGCCTTCC------CAGATCCCAAAGCGACGTGGTAGGAAAAAAGGATCAAAAGGAGTAGACGCACTTATTGCAAAGGA---ATCATCAAGCCTGTCTCAACAAATATTTTTTGGT---GGCTCTACTGTTAAAAAAGTTAAGACTACAAAGGAACT
droSim2	4:620314-620585 -		A--CTGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAACATTTATTTGA---TGCT---CAGTTAACTAATGCAACCGCGAATCAGATGCCTATGTC---------CGCTG------TCGGCTATGAGTCAAGTACTAGACATGAGTATTT-----GGA----------------AAGCGAA---TCGCCTTCC------CAGATCCCAAAACGACGTGGTAGGAAAAAAGGATCAAAAGGAGTAGACGCACTTATTGCAAAGGA---ATCATCAAGCCTGTCTCAACAAATATTTTTTGGT---GGCT---CTGTTAAAAAAGTTAAGACTACAAAAGAACT
droSec2	scaffold_30:519930-520201 -		A--CTGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAACATTTATTTGA---TGCT---CAGTTAACTAATGCAACCGCGAATCAGATGCCTATGTC---------CGCTG------TCGGCTATGAGTCAAATACTAGACATGAGTATTT-----GGA----------------AAGCGAA---TCGCCTTCC------CAGATCCCAAAACGACGTGGTAGGAAAAAAGGATCAAAAGGAGTAGACGCACTTATTGCAAAGGA---ATCATCAAGCCTGTCTCAACAAATATTTTTTGGT---GGCT---CTGTTAAAAAAGTTAAGACTACAAAAGAACT
droYak3	4:875745-876020 -		A--TG-----CGAAG------------------TAAA-------------------------GAAAGCTGAAAATTTAGTTGA---TGCT---CAGTTAACTAATGCAACCGAGAATCAGATGCCTATCCC---------TACGGTCAGTATCGGCTATGAGTCGAACACTAGACATGAGTATTT-----GGA----------------AAGCAAT---TCGCCTTCC------CAGATCCCAAAACGACGTGGTAGGAAAAAAGGGTCAAAAGGAGTAGACTCACTTATTGCAAAGGA---ATCATCAAGCCTGTCTCAACAAATATTTTTTGGT---TGCTCAACTGTTAAAAAGGTTAAGACTACTAAGGAACT
droEre2	scaffold_4512:457771-458040 +		A--G-----------------------------TTAA-------------------------GAAAGCTGAAAATTTATTTGA---TGCT---CAGTTAACTAATGCCACCGCGAATCAGATGTCTATCCC---------TACCGTCAGTATCGGCTATGAGTCGAATACGAGACATGAGTACTT-----GGA----------------AAGCAAT---TCGCCGTCC------CAGATCCCAAAACGCCGTGGTAGAAAAAAAGGATCAAAAGGAGTTGACTCACTTATTGCAAAGGA---ATCATCCAGTCTATCTCAACAAATATTTTTTGGT---GGCTCAACTGTTAAAAAGGTTAAGACCACAAAAGAACT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

G--CTTGAGCCGAAG------------------CTC-----GATCAAAATCGCTTAA----AGT------------CATGTGAAGAAACAAGTAAGCAGTATTTTGTAAT------------ACTTGTACT---------TTTTA------ATGAATATAATTTAAATTGCAT--AA--------------------------------AAATA------TTTTGTCT------TAAGTTCCAAAAAAACGTGGCCGCAAAAAGGGCTCCAAAGGTGTAGATTCACTAATTGCGAAAGA---AT---CAAGTCTATCGCAGCAAATATTCTTCGG------ATCTGGTGTTAAAAAAGTAAAAACTACAAAGGAACT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................................................................AGATTCACTAATTGCGAAAG...............................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GGGCTCCAAAGGTGTAGA................................................................................................	18	1	1.00	1	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................ATCGCAGCAAATATTCTTCGG------ATCT................................	25	1	1.00	1	1	0	0	0	0	0
..........................................ATCAAAATCGCTTAA----AGT------------CATGT........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................GA---AT---CAAGTCTATCGCAGCA......................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................AT---CAAGTCTATCGCAGCAAA....................................................	20	1	1.00	1	0	0	0	0	0	1

droVir3

G--CTAGAGGCAAAG------------------CCGG-----GTCAAAATAATTCAA----AGG------------CATCTACCGAAGCAAGTAAGCAACAATTTTTAACATCT------------------------------------------TTCAAGTCAAATGATAGTAACAAG---TT-----GGA-----AT-G-CCATGAAAACA------TTCTCTCT------CAAGCCCCTAAAAAGCGCGGCCGGAAGAAGGGCTCCAAAGGTGTCGATTCACTTATTGCCAAGGA---GT---CAAGTCTTTCCCAGCAAATTTTGTTTGGT------TCTGGTGTTAAAAAAGTAAAAACCACAAAAGAACT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................AAAAAGCGCGGCCGGAAGAAGGGCTCCAAAGGT.....................................................................................................	33	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AGCAAATTTTGTTTGGT------TCTGGT.............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................AGAAGGGCTCCAAAGGTGTC..................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTGTTTGGT------TCTGGTGTTAAA.......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................AGG------------CATCTACCGAAGCAA..............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AAATTTTGTTTGGT------TCTGGTGT...........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................ACAAG---TT-----GGA-----AT-G-CCATGAAAAC....................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TCTGGTGTTAAAAAAGTAAAA..............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GAAGGGCTCCAAAGGTGTCGATT..............................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AGCGCGGCCGGAAGAAGGGCTCCA..........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TAGAGGCAAAG------------------CCGG-----GTCAAAAT.......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GCGGCCGGAAGAAGGGCTCCAAAGGTGT...................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................AGCGCGGCCGGAAGAAGG................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

G--CAATCGATTC-------------------------------------------CCATTAGT-------CATA----ATGAG----------GGTAGCAA-----------TAAACAGATGC------C---------AGCTG------------------TAAAC---AAGCCCCAAGATTA-----CCA-----AC-G-CAGCGAGAATA------TTCTCTCT------CAAGTTCCTAAAAAACGTGGTCGCAAAAAGGGCTCGAAAGGCGTCGATTCTCTCATTGCCAAGGA---ATCCTCCAGTTTGTCGCAGCAAATATTTTTCAA------CTCCGGCGTGAAAAAGGTGAAAACTACCAAGGAACT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................AAGATTA-----CCA-----AC-G-CAGCGA........................................................................................................................................................................	19	1	1.00	1	1	0
................................................................................................................................................................................................................................................................................................ATTGCCAAGGA---ATCCTCCAGTTTGTCGC..........................................................	28	1	1.00	1	1	0
...............................................................................ATGAG----------GGTAGCAA-----------TAAACA..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1

droWil2

A--CGCCA-----ACGCCATCTCTATTTCCCTTTGAGGAACGACG----------AA----AGG------------CACTTGAGGAAGCTGGGAAGCAACAGATTGAAATTTCTGTTCTAGTACC---TCCCTCAACAACTACGTCGTCATTAGGGAACGAACAGAGCAACAGAAGCAACGATTTTATTGAGGGAGGAGCCGCCAGCAGGGGCA------TTCTGCCT------CAAATTCCAAAGAAGCGTGGGCGGAAAAAGGGTTCAAAGGGCGTGGATTCGCTAATAGCGAAGGA---ATCGTCAAGCCTATCGCAACAAATATTTTTTGGT------TCTGGCGTCAAAAAAGTTAAAACTACAAAGGAACT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................CTGTTCTAGTACC---TCCCTC...................................................................................................................................................................................................................................................	19	1	2.00	2	1	1	0	0	0
..........................................................................................................................................................................................................................................................GTGGGCGGAAAAAGGGTT.............................................................................................................	18	1	1.00	1	0	0	1	0	0
.........................................................................................................................................AACTACGTCGTCATTAGGG.............................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................ATATTTTTTGGT------TCTGGCGTC..........................	21	1	1.00	1	0	0	0	1	0
...................................................................................................................................................TCATTAGGGAACGAACAGAGC.................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...............................................................................................................................................GTCGTCATTAGGGAACGAACAGAGC.................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
............................................................................................................................................................AACGAACAGAGCAACAGAAG.........................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................GAACGAACAGAGCAACAGAAGCAAC.....................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................GAACGAACAGAGCAACAGAAGCAACG....................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.................................................................................................................................................CGTCATTAGGGAACGAACAGAGCAACA.............................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................TTAAAACTACAAAGGAACT	19	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................TAGCGAAGGA---ATCGTCAAGCCT...............................................................	22	1	1.00	1	0	0	1	0	0
............................................................................................................................................................AACGAACAGAGCAACAGAAGC........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................AAAGGGTTCAAAGGGCGTGG.................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................ACTACGTCGTCATTAGGGA............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
.........................................................................................................................................AACTACGTCGTCATTAGGGAACGAACA.....................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0

dp5

G--T-----------------------------CGAAGAACGCCG-----------------AAAATCCGATAAAATCGATGA---TTCTATTAGGCAGCAAATTGCAACATCTATACAAATGCCAATGCC---------TTCGATTGGGTTGGGCCACGAGTCAAATAGTAGGACTGAATATTT-----GGA----------------AAATTCA---TCGAAGTCT------CAAGTTCCTAAAAAACGTGGTCGGAAGAAAGGCTCAAAAGGCGTGGATGCTGTAATTGCTAAGGA---ATCGTCGAGCCTTTCTCAGCAAATTTTTTTTGGCGTTGGCTCTACGGTGAAAAAGGTAAAGACCACCAAAGAACT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................................................................TCGGAAGAAAGGCTCAAAAGGC.....................................................................................................	22	1	2.00	2	0	1	0	0	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................GTAATTGCTAAGGA---ATCGTCG....................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAAAACGTGGTCGGAAGAAAGGC..............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................AAAACGTGGTCGGAAGAAAGGCT.............................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................AGAACGCCG-----------------AAAATCCGATA................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................ACGAGTCAAATAGTAGGACTGAAT....................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................AAACGTGGTCGGAAGAAAGGC..............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................TTTTTTGGCGTTGGCTCTACGGTG..........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AAGGCGTGGATGCTGTAATTG.....................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGGCGTTGGCTCTACGGTGAAAAAGGT..................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................CGTGGATGCTGTAATTGCTAAGGA---...........................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GGCGTTGGCTCTACGGTGAAAAAGGTA.................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGGCGTTGGCTCTACGGTG..........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............................................................................CGATGA---TTCTATTAGGCAGCAA...................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

G--T-----------------------------CGAAGAACGCCG-----------------AAAATCCGATAAAATCGATGA---TTCTATTAGGCAGCAAATTGCAACATCTATACAAATGCCAATGCC---------TTCGATTGGGTTGGGCCACGAGTCAAATAGTAGGACTGAATATTT-----GGA----------------AAATTCA---TCGAAGTCT------CAAGTTCCTAAAAAACGTGGTCGGAAGAAAGGCTCAAAAGGCGTGGATGCTGTAATTGCTAAGGA---ATCGTCGAGCCTTTCTCAGCAAATTTTTTTTGGCGTTGGCTCTACGGTGAAAAAGGTAAAGACCACCAAAGAACT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................................................................................................GTAATTGCTAAGGA---ATCGTCGAGCCT...............................................................	26	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CTAAGGA---ATCGTCGAGCC................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CGTGGATGCTGTAATTGCTAAG................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................GTAAAGACCACCAAAGAACT	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTTTTTTTGGCGTTGGCT..................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................TCGGAAGAAAGGCTCAAAAGGCGTGG.................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................AATTGCTAAGGA---ATCGTCGAGCCT...............................................................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................AAGGCTCAAAAGGCGTGGA................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................TTCGATTGGGTTGGGCCA...........................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATTTTTTTTGGCGTTGGCG..................................	19	2	0.50	1	1	0	0	0	0	0

droAna3

T--CAA-----------------------------GG-------------------------AAAATCAGAGAAA---------------------------------ATCGCTCTTCAAATACACAGGCC---------CGTTGACGCTTAATGTCCGGTTTTAAAA---AAGACTGAATTATT-----CCA----------------TAAAGCT---TCCGACTCA------CATGGCTACAAAAAACGTGGTCGTAAAAAGGGATCTAGAGGTGTTGATGCTGTAATTTCTAAAGA---GTCGTCTAGCTTGTGCCAGCAAATCTTCTTAGGC---AGCTCGACAGTAAATAAAGTCAAGACGACAAAGGAACT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................GG-------------------------AAAATCAGAGAAA---------------------------------ATCGCT.......................................................................................................................................................................................................................................................................	21	2	1.00	2	0	0	0	0	0	2
................................................................................................................................................................................................................................................................GTAAAAAGGGATCTAGAGGT.....................................................................................................	20	2	1.00	2	0	1	1	0	0	0
..........................................................................................................................................................................................................................................................................................................A---GTCGTCTAGCTTGTGCCAGCAAA....................................................	24	2	1.00	2	0	0	0	0	0	2
............................................................................................................................................................................................................................................................GGTCGTAAAAAGGGATCTAGAGGTGTT..................................................................................................	27	2	0.50	1	0	0	0	0	1	0
....AA-----------------------------GG-------------------------AAAATCAGAGAAA---------------------------------ATCGCT.......................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................AGA---GTCGTCTAGCTTGTGCCAGC.......................................................	23	2	0.50	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................GTAATTTCTAAAGA---GTCGTCTAGCT................................................................	25	2	0.50	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................AAGA---GTCGTCTAGCTTGTGCCAGCAAA....................................................	27	2	0.50	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................A---GTCGTCTAGCTTGTGCCA.........................................................	19	2	0.50	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................GTAAAAAGGGATCTAGAGGTGTTGAT...............................................................................................	26	2	0.50	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................CAAAAAACGTGGTCGTAAAAAGGG...............................................................................................................	24	2	0.50	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................GGTCGTAAAAAGGGATCTAGAGGT.....................................................................................................	24	2	0.50	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................T---TCCGACTCA------CATGGCTACAAAAAACGT.............................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................AGAGGTGTTGATGCTGTAAT.......................................................................................	20	2	0.50	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................GTAATTTCTAAAGA---GTCGTCT....................................................................	21	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GCAAATCTTCTTAGGC---AGCTC.................................	21	2	0.50	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................AAAGA---GTCGTCTAGCTTGTGCCA.........................................................	23	2	0.50	1	0	0	0	0	0	1
...............................................................................................................................................................................CTGAATTATT-----CCA----------------TAAAGCT---TCC...........................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................GACTCA------CATGGCTACAAAAAACGT.............................................................................................................................	24	2	0.50	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................AAATCTTCTTAGGC---AGCTCGAC..............................	22	2	0.50	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AGCAAATCTTCTTAGGC---AGCTCGA...............................	24	2	0.50	1	1	0	0	0	0	0
.......................................................................................................................AATACACAGGCC---------CGTTGACGCT...................................................................................................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
........................................................................................................................ATACACAGGCC---------CGTTGACGCT...................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................ATCTAGAGGTGTTGATGCT............................................................................................	19	2	0.50	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................AATTTCTAAAGA---GTCGTCT....................................................................	19	2	0.50	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................TCTAAAGA---GTCGTCTAGCTTG..............................................................	21	2	0.50	1	0	1	0	0	0	0

droBip1

A--TAC---ACAAAA------------------TTCG-----G-------------------AAAAATTAAATGATTTTTATA---AGCA-------TAAACA-ATCAATCGCTTCTCAAATACACTTGCC---------AGTTGAGGCCCTTTGTCCTGTTTCAAAC---ACGACTGAATTATT-----AAA----------------TGACACA---ACCGAGTCA------CGTTCCCAAAAAAAACGTGGTCGTAAAAAGGGATCTAGAGGTGTGGATGCTGTAATTTCTAAAGA---GTCGTCTAGCTTATGCCAGCAAATCTTCTCAGGC---AGCTCTGCTGTTAAAAAAGTCAAAACAACTAAAGAACT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A--TAT-GGAAGA--------------------------TAGCAG----------CA----GGAAAATTGAGACTACAATAGA---TGCTAGTATGCATCAAGCTG---------------------TACT---------TGTGGGCA------G---------------------CAATGATTT-----GGA----------------GAACACAACGTCTCAGTCTCGTTTGCATATTCCAAAAAAACGCGGTCGAAAAAGAGGCTCTAAAGGGGTTGACTCTTTGATAACCAAGGATACATCGGCTAGCCTCTCCCAACAAATCTTCTTTGGTCAAGGCTCGACTGTGAAAAAGGTGAAGACCACTAAAGAATT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A--CTGTCGAGGACA------------------TAAA-------------------------AAAAATGGATAATGTAATTGA---TTTA---AAGCTACACAGTGCAT---------------CCATGCC---------TGATCCCGGAACGGGTTGTGATCCAAATAGTAGGCATAGATATTT-----AGA----------------AAACGCC---TCTCAGTCT------CAAATTCCAAAAAGGCGTGGCAGGAAAAAAGGATCAAAAGGCGTGGACGCAGTTATTGCCAAGGA---GTCCTCTAGCCTGTCTCAGCAGATTTTCTTTGGC---GGTTCAACTGTTAAAAAGGTGAAGACCACCAAGGAGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAACTATCGAGGAGG------------------TGAG-------------------------GAAATCTGAAAATGTAATTGA---TACG---CGGTTGCACAATTTAAGTGCAAGTCAGATGCCTATGAC---------TTCTGTCGGTGTAGGGTATGATCCAAATAGTAGGCCTGAGTATTT-----GGA----------------AAACTCT---TCTCATTCT------CAAATTCCAAAGAGACGTGGAAGAAAGAAAGGATCAAAAGGTGTGGACGCTATTATTGCCAAGGA---GTCATCTAGCTTGTCTCAACAAATTTTGTTTGGT---GGCTCAACTGTTAAAAAGGTAAAGACTACAAAAGAACT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A--G-----AGGAGG------------------TGAG-------------------------GAAACCTGAAAATGTAATTGA---TGCG---CGGTTACACAATGTAACTGCAACTCAGATGCCTATGCC---------TACTGCTGGTATAGGGTATGATCCAAATAGCAGGCCTGAGTATTT-----GGA----------------AAACTTT---TGTCAATCT------CAAATTCCAAAAAGACGTGGAAGGAAAAAAGGATCTAAAGGTGTGGACGCTGTTATTGCCAAGGA---GTCATCGAGTTTGTCTCAGCAAATATTTTTTGGT---GGCTCAACTGTTAAAAAGGTAAAGACAACCAAGGAACT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A--CTGTCGAGGATG------------------TAAG-------------------------AAAGTCTGAAAATGTAATAAA---TGCT---CGATTAAACAATGCAACTGCGAATCAGATGCCTACTCC---------TGTAACAAGTATGGGTTACGATACAAATTGTAGAACTGAGTATTT-----GGA----------------AAACACC---TCCCAGTCT------CAAATTCCAAAAAGACGGGGTAGAAAAAAAGGATCGAAAGGTGTGGACGCACTTATCGCCAAGGA---GTCTTCTAGCCTGTCTCAACAAATATTTTTTGGT---GGTTCAACTGTTAAAAAGGTTAAAACCACAAAGGAACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A--CTGTCGAAGAAG------------------TAAG-------------------------AAAGTCCGAGAATTTATTTGA---TGCT---CGATTACACAATGCATCTGCTATTCAGATGGCAATGCC---------TTCTTCCGGCATGGGCTATGATCCAAATAGTAGACCTGAGTATTT-----GGA----------------AAACTCC---TCCCAGTCT------CAAATTCCAAAAAGACGTGGTAGAAAAAAAGGATCAAAAGGTGTGGACGGTCTTATCGCCAAGGA---GTCATCTAGCCTGTCGCAACAAATATTTTTTGGG---GGCTCAACCGTTAAAAAAGTAAAGACCACGAAGGAACT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

G--G-----------------------------TTAG-------------------------GAAACCTGAAAATGTGTTTGA---TG------------------------CAATTCAGATGCCTACGCC---------TACTGCTGGAATAGGCTTTGATCAAAATAGTAGGACTGGGTATTT-----GGA----------------AAGCGCT---TCACAGTCC------CAAATGCCAAAAAGGCGTGGAAGAAAAAAAGGATCAAAAGGTGTAGACGCTCTGATTGCTAAGGA---GTCATCTAGCCTGTCTCAACAAATATTTTTTGGT---GGATCAACTGTTAAGAAGGTGAAGACTACGAAAGAACT	Size	Hit Count	Total Norm	Total
No Reads

dm3

A--CTGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAACATTTATTTGA---TGCT---CAGTTAACTAATACAACCGCAAATCAGATACCTATGTC---------CGCTGTCAGCATCGGCTATGAGTCGAATACTAGACATGAGTATTT-----GGA----------------AAGCGAT---TCGCCTTCC------CAGATCCCAAAGCGACGTGGTAGGAAAAAAGGATCAAAAGGAGTAGACGCACTTATTGCAAAGGA---ATCATCAAGCCTGTCTCAACAAATATTTTTTGGT---GGCTCTACTGTTAAAAAAGTTAAGACTACAAAGGAACT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........GACGAAG------------------TAAA-------------------------GAAAGCTGAACATT.............................................................................................................................................................................................................................................................................................................	25	1	159.00	159	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	44	35	7	5	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AAG------------------TAAA-------------------------GAAAGCTGAACATT.............................................................................................................................................................................................................................................................................................................	21	1	96.00	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	18	12	20	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TAGACGAAG------------------TAAA-------------------------GAAAGCTGAACATT.............................................................................................................................................................................................................................................................................................................	27	1	57.00	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	6	8	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GAAG------------------TAAA-------------------------GAAAGCTGAACATTTATT.........................................................................................................................................................................................................................................................................................................	26	1	46.00	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	13	5	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AG------------------TAAA-------------------------GAAAGCTGAACATT.............................................................................................................................................................................................................................................................................................................	20	1	39.00	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	7	1	2	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GAAG------------------TAAA-------------------------GAAAGCTGAACATT.............................................................................................................................................................................................................................................................................................................	22	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	11	2	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................TAAAAAAGTTAAGACTACAAAGGAACT	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......TAGACGAAG------------------TAAA-------------------------GAAAGC.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CTAGACATGAGTATTT-----GGA----------------AAGCGA..................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................C---------CGCTGTCAGCATCGGCTATGAGTC.....................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................GTC---------CGCTGTCAGCATCGG..............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GCCTGTCTCAACAAATATTTTTTGGT---G.....................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TGAGTATTT-----GGA----------------AAGCGAT---TCGCC.........................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TCC------CAGATCCCAAAGCGACGTGGTA.........................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

A--CTGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAACATTTATTTGA---TGCT---CAGTTAACTAATGCAACCGCGAATCAGATGCCTATGTC---------CGCTG------TCGGCTATGAGTCAAGTACTAGACATGAGTATTT-----GGA----------------AAGCGAA---TCGCCTTCC------CAGATCCCAAAACGACGTGGTAGGAAAAAAGGATCAAAAGGAGTAGACGCACTTATTGCAAAGGA---ATCATCAAGCCTGTCTCAACAAATATTTTTTGGT---GGCT---CTGTTAAAAAAGTTAAGACTACAAAAGAACT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................TGCT---CAGTTAACTAATGCAACCGCGAA.....................................................................................................................................................................................................................................................................	27	1	16.00	16	0	0	0	0	0	0	0	1	9	5	1	0	0	0	0	0	0
....TGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAA.................................................................................................................................................................................................................................................................................................................	25	1	11.00	11	0	0	0	0	0	0	0	1	0	0	0	0	10	0	0	0	0
......................................................................................TGCT---CAGTTAACTAATGCAACCGCGA......................................................................................................................................................................................................................................................................	26	1	9.00	9	0	0	0	0	0	0	0	1	5	3	0	0	0	0	0	0	0
.............................................................................................................................TATGTC---------CGCTG------TCGGCTATGAGTCAAG..................................................................................................................................................................................................................	27	1	8.00	8	0	0	6	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................T---CAGTTAACTAATGCAACCGCGAA.....................................................................................................................................................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	1	0	4	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCAAAAGGAGTAGACGCACTTATTGCA...................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0
................................................................................................................................................................................TGAGTATTT-----GGA----------------AAGCGAA---TCGCCTT.......................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TTCC------CAGATCCCAAAACGACGTGGT..........................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
............................................................................................................................................................TATGAGTCAAGTACTAGACATGAGTATT.................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
..........CGAAG------------------TAAA-------------------------GAAAGCTGAACATTTATT.........................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0
....................................................................................................................TCAGATGCCTATGTC---------CGCTG------TCGGC.............................................................................................................................................................................................................................	25	1	3.00	3	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TAGACATGAGTATTT-----GGA----------------AAGCGAA---T.............................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AAGGATCAAAAGGAGTAGACGCACT..........................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGAGTCAAGTACTAGACATGAGTATT.................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TAAAAAAGTTAAGACTACAAAAGAACT	27	1	3.00	3	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AAAAAAGTTAAGACTACAAAAGAACT	26	1	3.00	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.............AG------------------TAAA-------------------------GAAAGCTGAACATTTATT.........................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCCCAAAACGACGTGGTAGGAAAAAAGGA..............................................................................................................	29	1	3.00	3	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0
....................................................................................................................TCAGATGCCTATGTC---------CGCTG------TCGGCTA...........................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
........GACGAAG------------------TAAA-------------------------GAAAGCTGAACATT.............................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATTTTTTGGT---GGCT---CTGTTAAAAAA....................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TAATGCAACCGCGAATCAG.................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
....TGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAACA...............................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..........CGAAG------------------TAAA-------------------------GAAAGCTGAACATTTA...........................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................T---CTGTTAAAAAAGTTAAGACTACAAAAGA...	29	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
....TGTAGACGAAG------------------TAAA-------------------------GAAAGCTGA..................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
..................................................................................................................................................................................................................AGCGAA---TCGCCTTCC------CAGATCC........................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CAGTTAACTAATGCAACCGCGAATCAGA................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
............................................................................................................................................................TATGAGTCAAGTACTAGACATGAGT....................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................AGATGCCTATGTC---------CGCTG------TCGGC.............................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TAAAAAAGTTAAGACTACAAAAGAAC.	26	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCAAAAGGAGTAGACGCACTTATTGCAA..................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................AACTAATGCAACCGCGAA.....................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CAAAGGA---ATCATCAAGCCT...............................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AAAAAAGTTAAGACTACAAAAGAAC.	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................ATGAGTCAAGTACTAGACATG.......................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.........ACGAAG------------------TAAA-------------------------GAAAGCT....................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................ATCAGATGCCTATGTC---------CGCTG------..................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TGTC---------CGCTG------TCGGCTATGAGTCAAG..................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................CCTATGTC---------CGCTG------TCGGCTA...........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................TC---------CGCTG------TCGGCTATGAGTCAAG..................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TCAAGCCTGTCTCAACAAATATTTTT.............................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TG------TCGGCTATGAGTCAAGTACTAGACA.........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................TG------TCGGCTATGAGTCAAGTACTA.............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................TGCCTATGTC---------CGCTG------TCGGCTATGAGTA.....................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGACGAAG------------------TAAA-------------------------GAAAGCTGAACAT..............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TTTGGT---GGCT---CTGTTAA........................	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AGTAGACGCACTTATTGCAAAGG...............................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CGCTG------TCGGCTATGAGTCAAG..................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................C------CAGATCCCAAAACGACGTG............................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AACCGCGAATCAGATGCC............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ACGACGTGGTAGGAAAAA..................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AAAAGGATCAAAAGGAGTAGACGCACT..........................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................CT---CAGTTAACTAATGCAACCGCGAATC...................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......AGACGAAG------------------TAAA-------------------------GAAAGCTGAAA................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................ATCAGATGCCTATGTC---------CGCTG------TCGGC.............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...CTGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAACAT..............................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CGTGGTAGGAAAAAAGGATCA...........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....TGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAAA................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TTTGGT---GGCT---CTGTTAAAAAAGTTAAGAC............	29	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................GCT---CAGTTAACTAATGCAACCGCGAA.....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AGTAGACGCACTTATT......................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GTTAAAAAAGTTAAGACTACAAAAGAACT	29	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCAAAAGGAGTAGACGCACTTATA......................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................TCAAAAGGAGTAGACGCACTTAAAA.....................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................CAGATCCCAAAACGACGTGGTAGGAAAA...................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......AGACGAAG------------------TAAA-------------------------GAAAGCTGAACATT.............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................CCTATGTC---------CGCTG------TCGGCT............................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AAAGGATCAAAAGGAGTAGACGCA............................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CAAAAGGAGTAGACGCACTTATT......................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AAAAGGAGTAGACGCAC...........................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TAAGACTACAAAAGAACT	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AACAAATATTTTTTGGT---GGCT---CTGTT..........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................AAAAAGGATCAAAAGGAGTAGACGCACT..........................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AGCGAA---TCGCCTTCC------CAGATCCCAAAAC..................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........CGAAG------------------TAAA-------------------------GAAAGCTGAACATTTATTT........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........ACGAAG------------------TAAA-------------------------GAAAGCTGAACATTT............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........ACGAAG------------------TAAA-------------------------GAAAGCTGAACATTTATT.........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TAAGACTACAAAAGAAC.	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TATGAGTCAAGTACTAGACATGAGTA...................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................TGCAACCGCGAATCAGATGCCTATGTC---------.............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................CGCACTTATTGCAAAGGA---ATCATCAAT..................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...CTGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAAC................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AAAAAGGATCAAAAGGAGTAGACGCAC...........................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................TTT-----GGA----------------AAGCGAA---TCGCCTTCC------CAGT...........................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TTTTTGGT---GGCT---CTGTTAAAAAAG...................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGACGAAG------------------TAAA-------------------------GAAAGCTGAACATTTA...........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATCATCAAGCCTGTCTCAACAAAT...................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GCCTATGTC---------CGCTG------TCGGC.............................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................A---TCGCCTTCC------CAGATCCCAAAACGACG..............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................ATGTC---------CGCTG------TCGGCTA...........................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................ATGTC---------CGCTG------TCGGCTATGAGTCAAG..................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............AAG------------------TAAA-------------------------GAAAGCTGAAC................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CGCCTTCC------CAGATCCCAAAACGACGTG............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................TT-----GGA----------------AAGCGAA---TCGCCTTCC------...............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCAAAAGGAGTAGACGCACTTATTG.....................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...CTGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAA.................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AAA-------------------------GAAAGCTGAACATTTATTTGA---TGC................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TTTGGT---GGCT---CTGTTAAAAAA....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTTTTTGGT---GGCT---CTGTTAAAAAAGT..................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AAAACGACGTGGTAGGAAAAAAG................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AAGGATCAAAAGGAGTAGACGCACTTAT.......................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................TCC------CAGATCCCAAAACGAC...............................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CGAA---TCGCCTTCC------CAGATCCCAA.....................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................GTC---------CGCTG------TCGGCTATGAGTCAAA..................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGCAAAGGA---ATCATCAAGCCTGTCTC..........................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............AAG------------------TAAA-------------------------GAAAGCTGAACATTT............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GTGGTAGGAAAAAAGGATCAAAAGGAGT...................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GAAAAAAGGATCAAAAGGAGT...................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....TGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAACAT..............................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGTTAAAAAAGTTAAGACTACAAAAGA...	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................TTGA---TGCT---CAGTTAACTAATGCAAC...........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........GACGAAG------------------TAAA-------------------------GAAAGCTGAACATTTA...........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........CGAAG------------------TAAA-------------------------GAAAGCT....................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................GTTAAGACTACAAAAGAACT	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CATCAAGCCTGTCTCAACAA.....................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TTCC------CAGATCCCAAAACGACGTGGTA.........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCAAAAGGAGTAGACGCACTTA........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TTTGGT---GGCT---CTGTTAAAAA.....................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCAAAAGGAGTAGACGCACTTAT.......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATATTTTTTGGT---GGCT---CTGTTAAAAA.....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................A-------------------------GAAAGCTGAACATTTATTTGA---TGCT---CA..........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GACTACAAAAGAACT	15	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TCC------CAGATCCCAAAACGACGTGGTAGGA......................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AAAGGATCAAAAGGAGTA..................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTAACTAATGCAACCGCGAA.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................TAACTAATGCAACCGCGAATCAG.................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................TATTTGA---TGCT---CAGTTAACTAATGC..............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................GATCCCAAAACGACGTGGTAG........................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGCT---CAGTTAACTAATGCAACCGCGAAA....................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CGCACTTATTGCAAAGGA---ATCATCAAG..................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................A-------------------------GAAAGCTGAACATTTATTTGA---TGCT---............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCAAAAGGAGTAGACGCACTTATTGC....................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

A--CTGTAGACGAAG------------------TAAA-------------------------GAAAGCTGAACATTTATTTGA---TGCT---CAGTTAACTAATGCAACCGCGAATCAGATGCCTATGTC---------CGCTG------TCGGCTATGAGTCAAATACTAGACATGAGTATTT-----GGA----------------AAGCGAA---TCGCCTTCC------CAGATCCCAAAACGACGTGGTAGGAAAAAAGGATCAAAAGGAGTAGACGCACTTATTGCAAAGGA---ATCATCAAGCCTGTCTCAACAAATATTTTTTGGT---GGCT---CTGTTAAAAAAGTTAAGACTACAAAAGAACT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................ATTT-----GGA----------------AAGCGAA---TCGCCTT.......................................................................................................................................................	21	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................C------CAGATCCCAAAACGACGTGG...........................................................................................................................	21	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................TAGGAAAAAAGGATCAAAAGG......................................................................................................	21	1	1.00	1	0	0	0	1
......................................................................................................................AGATGCCTATGTC---------CGCTG------TCG...............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................GA----------------AAGCGAA---TCGCCTTCC------CAG............................................................................................................................................	21	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................ATTT-----GGA----------------AAGCGAA---TCGCCTTT......................................................................................................................................................	22	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................GATCAAAAGGAGTAGACGCAC...........................................................................................	21	1	1.00	1	0	1	0	0
......................................................................................................................................................................................TTT-----GGA----------------AAGCGAA---TCGCCTTC......................................................................................................................................................	21	1	1.00	1	0	1	0	0
..........................................................................................................................GCCTATGTC---------CGCTG------TCGGCTATGAG.......................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................GGATCAAAAGGAGTAGACG..............................................................................................	19	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTTTTTGGT---GGCT---CTGTTAA........................	20	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................TCAAAAGGAGTAGACGCACTT.........................................................................................	21	1	1.00	1	1	0	0	0

droYak3

A--TG-----CGAAG------------------TAAA-------------------------GAAAGCTGAAAATTTAGTTGA---TGCT---CAGTTAACTAATGCAACCGAGAATCAGATGCCTATCCC---------TACGGTCAGTATCGGCTATGAGTCGAACACTAGACATGAGTATTT-----GGA----------------AAGCAAT---TCGCCTTCC------CAGATCCCAAAACGACGTGGTAGGAAAAAAGGGTCAAAAGGAGTAGACTCACTTATTGCAAAGGA---ATCATCAAGCCTGTCTCAACAAATATTTTTTGGT---TGCTCAACTGTTAAAAAGGTTAAGACTACTAAGGAACT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................TATGAGTCGAACACTAGACATGAGTATTT-----GGA----------------........................................................................................................................................................................	32	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
....................................................................................................................................................................GAACACTAGACATGAGTATTT-----...........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TTCC------CAGATCCCAAAACGACGTGGTA.........................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................TATCCC---------TACGGTCAGTATCGGCTATGAGTC.....................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AAAGGTTAAGACTACTAAGGAACT	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................TGCAACCGAGAATCAGATGCCTATCCC---------.............................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GT---TGCTCAACTGTTAAAAA.....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....G-----CGAAG------------------TAAA-------------------------GAAAGCTGAAAATTTAGTT........................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................CTATCCC---------TACGGTCAGTATCGGC.............................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................TGAAAATTTAGTTGA---TGCT---CAGT........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................CGCCTTCC------CAGATCCCAAAACGACGTG............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGCAAAGGA---ATCATCAAGCCTGTC............................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................TATGAGTCGAACACTAGACATGAGT....................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................CCC---------TACGGTCAGTATCGGCTATGAGTC.....................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CCCAAAACGACGTGGTAGGA......................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................CCC---------TACGGTCAGTATCGGCTATGAGTCG....................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................AACACTAGACATGAGTATTT-----GGA----------------AAGC....................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

A--G-----------------------------TTAA-------------------------GAAAGCTGAAAATTTATTTGA---TGCT---CAGTTAACTAATGCCACCGCGAATCAGATGTCTATCCC---------TACCGTCAGTATCGGCTATGAGTCGAATACGAGACATGAGTACTT-----GGA----------------AAGCAAT---TCGCCGTCC------CAGATCCCAAAACGCCGTGGTAGAAAAAAAGGATCAAAAGGAGTTGACTCACTTATTGCAAAGGA---ATCATCCAGTCTATCTCAACAAATATTTTTTGGT---GGCTCAACTGTTAAAAAGGTTAAGACCACAAAAGAACT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................TAATGCCACCGCGAATCAGATGTCT...........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................AAAAAGGATCAAAAGGAGTTGACTCACT..........................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AAAAAGGATCAAAAGGAGTTGACTCAC...........................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................ATCCCAAAACGCCGTGGTA.........................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................TCC------CAGATCCCAAAACGCCGTGGTAGA.......................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................ATCGGCTATGAGTCGAATACGAGA...........................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................GGCTATGAGTCGAATACGAGAC..........................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

dmo_1314

scaffold_6498:619537-619687 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.4	-22.4	-22.2