ID:

dmo_1307

 Coordinate:

scaffold_6498:510912-511062 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.2 -29.1 -29.0

Flybase annnotation

CDS [Dmoj\GI14081-cds]; exon [dmoj_GLEANR_14161:2]; intron [Dmoj\GI14081-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-
mature
  1. scaffold_340:540-563 +
  2. scaffold_4108:3165-3188 +
  3. scaffold_6271:41546-41569 +
  4. scaffold_6359:2845144-2845167 +
  5. scaffold_6473:16579543-16579566 +
  6. scaffold_6482:1210326-1210349 +
  7. scaffold_6482:1267445-1267468 +
  8. scaffold_6489:36355-36378 +
  9. scaffold_6496:25914022-25914045 +
  10. scaffold_6496:26742826-26742849 +
  11. scaffold_6496:26776792-26776815 +
  12. dmo_1307  scaffold_6498:511037-511060 +
  13. scaffold_6498:527852-527875 +
  14. scaffold_6500:14176374-14176397 +
  15. scaffold_6500:29606340-29606363 +
  16. scaffold_6500:30240753-30240776 +
  17. scaffold_6500:31319775-31319798 +
  18. scaffold_6540:35632-35655 +
  19. scaffold_6540:1044650-1044673 +
  20. scaffold_6540:4339395-4339418 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACATCTTCGTACTTTACCACAACCTACTATCACTTAACAGATGATGAATGTATGTTTTTAGTATCATCTCAAATTTTTCAATCAACTTTAATGCTTAACTCATATTTGTTAATGGCAGACGCAGACTTAAGCTCAATCAAAATATTGTTAACAGAAGTAAGAAGGCTCCAGTCGAGACTGCTCGACTGGGAGATACCCTGAACCCTCTAAGCTGATATTCTACTCATTCTGCACTTCTTTCAGAACGTGA
**************************************************...........(((((.((........................((((((.((...((((((...))))))....)).)))))).((((......))))........(((......)))(((((((((....))))))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
.....................................................................................................................................................................................................................TGATATTCTACTCATTCTGCACTT.............. 24 0 20 0.60 12 12 0 0
.....................................................................................................................................................................................................................TGATATTCTACTCATTCTGCACTTCTT........... 27 0 20 0.40 8 8 0 0
...........................................GATGAATGGATGTGTTGAGTA........................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1
..............................................................................................................................................................................................................TCTAAGCTGATATTCTACTCATTCTGCAC................ 29 0 20 0.25 5 5 0 0
.....................................................................................................................................................................................................................TGATATTCTACTCATTCTGCACTTC............. 25 0 20 0.15 3 0 3 0
.............................................TGAATGTATGGTCTTTGTATCAT....................................................................................................................................................................................... 23 3 7 0.14 1 1 0 0
...........................................................................................................................................................................................TGGGAGATACCCTGAACCCTCTAAGC...................................... 26 0 19 0.11 2 0 2 0
...............................................................................................................................................................................AGACTGCTCGACTGGGAGATACCC.................................................... 24 0 20 0.10 2 2 0 0
..............................................................................................................................................................................................................TCTAAGCTGATATTCTACTCATTCTGC.................. 27 0 20 0.05 1 0 1 0
.....................................................................................................................................................TAAAAGAAGTAAGAAGGCTCC................................................................................. 21 1 20 0.05 1 0 1 0
...............................................................................................................................................................................AGACTGCTCGACTGGGAGATACC..................................................... 23 0 20 0.05 1 0 1 0
....................................................................................................................................................................................GCTCGACTGGGAGATACCCTGAA................................................ 23 0 20 0.05 1 1 0 0
..............................................................................................................................................................................................................TCTAAGCTGATATTCTACTCATTCTG................... 26 0 20 0.05 1 1 0 0
...................................................................................................................................................................................TGCTCGACTGGGAGATACCC.................................................... 20 0 20 0.05 1 1 0 0
..........................................................................................................................................................................................................ACCCTCTAAGCTGATATTCTACTC......................... 24 0 20 0.05 1 0 1 0
.................................................................................................................................................................................................................AAGCTGATATTCTACTCATT...................... 20 0 20 0.05 1 1 0 0
..................................................................................................................................................................................CTGCTCGACTGGGAGATACCCT................................................... 22 0 20 0.05 1 1 0 0
......................................................................................................................................................................................TGGACTGGGAGATACCCTGAACC.............................................. 23 1 20 0.05 1 0 1 0
..................................................................................................................................................................................................TACCCTGAACCCTCTAAGCTGATATT............................... 26 0 20 0.05 1 1 0 0
..............................................................................................................................................................................................................TCTAAGCTGATATTCTACTCATTCTGCA................. 28 0 20 0.05 1 1 0 0
................................................................................................................................................................................GACTGCTCGACTGGGAGATACCCTG.................................................. 25 0 20 0.05 1 1 0 0
..............................................................................................................................................................................................................TCTAAGCTGATATTCTACTCATTCT.................... 25 0 20 0.05 1 0 1 0
.......................................................................................................................................................................................................TGAACCCTCTAAGCTGATATTCTACTC......................... 27 0 20 0.05 1 0 1 0

Anti-sense strand reads

TTGTAGAAGCATGAAATGGTGTTGGATGATAGTGAATTGTCTACTACTTACATACAAAAATCATAGTAGAGTTTAAAAAGTTAGTTGAAATTACGAATTGAGTATAAACAATTACCGTCTGCGTCTGAATTCGAGTTAGTTTTATAACAATTGTCTTCATTCTTCCGAGGTCAGCTCTGACGAGCTGACCCTCTATGGGACTTGGGAGATTCGACTATAAGATGAGTAAGACGTGAAGAAAGTCTTGCACT
**************************************************...........(((((.((........................((((((.((...((((((...))))))....)).)))))).((((......))))........(((......)))(((((((((....))))))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V056
head
...........................................................................................................................................................TTCATTCTTCCGAGGTCAGCTC.......................................................................... 22 0 20 0.80 16 16 0 0 0
.................GGGGTTGGATGCAAGTGAA....................................................................................................................................................................................................................... 19 3 19 0.53 10 3 6 0 1
.........................................................................................................................................................TCTTCATTCTTCCGAGGTCAGCTC.......................................................................... 24 0 4 0.50 2 2 0 0 0
...................................................................................................GAGCATAAACAAGTACCGT..................................................................................................................................... 19 2 3 0.33 1 0 1 0 0
..................GTGTTGGATGCAAGTGAA....................................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0
....................................................AACAAAAATCATAGGAGAG.................................................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0
..........................................................................................................................................................CTTCATTCTTCCGAGGTCAGCT........................................................................... 22 0 6 0.17 1 1 0 0 0
.................GGTGTTGGATGCAAGTGAAA...................................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0
..................GTGTTGGATGATAGCCATT...................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 1 0
..........TCGAAAGGGTGTTGGATGA.............................................................................................................................................................................................................................. 19 3 19 0.05 1 0 1 0 0
...........................................................................................................................................................................................ACCCTCTATGGGACTTGGGAGATTCG...................................... 26 0 19 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:510862-511112 + dmo_1307 AACATC--TTCGTACTTTACCACAACCTACTATCACTTAACAGATGATGAATGTATGTTTTTA------------GTATCATCTCAAAT----------TTTT----CAATCAACTTTAATGCTTAACTCATATTTGTTAATGGCAGACGCAGACTTAAGCTCAATC--AA--------------------------------------AATA-----------------------------T-----------TGTTAACAGAAGTAAGAAGGCTCCAGTCGAGACTGCTCGACTGGGAGATACCCTGAACCCTCTAAGCTGATATTCTACTCATTCTGCACTTCTTTCAGAACG--------TGA
droVir3 scaffold_12956:32137-32322 + AACCCT--TTAATAATTTCACACAACTGCTTACT---TGAAAG------AGTGTGCGTCAA--------TTTTTGGTCTCTTCTTAAAT----------TCTT----CGACAA------------------------------GCCGACGATGAATTAG-CCTTGCA--GA--------------------------------------AATACGACTTTTACTTTTAAG--------------------------AAAAAACAAGTAAGA-GGTTCCAGTCGGGAGCTCCCGACTAGGGGATACCCTGAACCC--------------------------------------------------TCT
droGri2 scaffold_15252:16595004-16595192 - ATCAGTTATCA------------------------------------GGAAGGCATGATAT-ATATCTGTTAGCCAGCTTATCTCGAAT----------C--------AAATTTTTTGAAAACTTAAATTA--------------------------------TAGT--AGTTAGTGGTTAGAAGTTAAAAGAGATGGGCCTGCAACCC----------------------------------ATCGGCTCCAGAAGTTAAACATGTCTGAATGGACTAGTCGGGAGAGCTCGATTAGGAGATACCCTTAAC-------------------------------------------------------
droWil2 scf2_1100000004967:4441726-4441821 + TTTTTA--G-CATGGTCCCCAATAGATGAA--------------------------------------------------------------------------------TCTACCATGTTGCTAGGCTTATATTTATTCCAAGTCAATCCTGTCTTAAATTCTAAT--GG--------------------------------------AAAA-----------------------------T-----------CG------------------------------------------------------------------------------------------------------------TTA
dp5 Unknown_group_10:28436-28506 + GACATC--GTCGTATTTTACCACAACTTACTACCACTTAACTGATGACGAATGTATGTTTCCG------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----TCCAACTC
droPer2 scaffold_42:531382-531452 + GACATC--GTCGTATTTTACCACAACTTACTACCACTTAACTGATGACGAATGTATGTTTCCG------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----TCCAACTC
droAna3 scaffold_13099:688774-688851 - GACATC--GTCATACTTCACAACAACATATTATCACTTGACTGAAGACGAATGTATGTTTTCATATGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATTGTG-----------------------------------------------------------------CAA
droBip1 scf7180000394499:15221-15343 + ATCATC--GTCGTACTTCACAACAACATATTATCACTTGACTGAAGACGAATGTATGTTTTCATATAA--------GCTTTTCTGCAAA----------C--------ACATTTTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAATCATTCAATCCTTTAAATAATTTGTTAA
droKik1 scf7180000302690:250386-250472 - CAAATA--CAAATTCGAT---------TAATA------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------AGCT-----------------------------T-----------TCTAAAAACAAGTAAAAAAGCTACAGTCGAATGTGTCGGACTGTAAAAGCCCCAGTAT-----------------------------------------------------CC
droFic1 scf7180000454040:315685-315776 + GACATC--GTCGTACTTCGCCACAACTTACTACCATTTAACCGATGACGAATGTACGTTTT-ATATCT------------ATCGCAAAT----------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT-----------------------------------------------TTCCGTCCGC----T----TCA
droEle1 scf7180000491104:924942-925081 - TTGTTA--A-C-----------------------------------------------------------------------------------------------------------------------------------GTGTGAAGTGAACTTTATCCCAATA--AA--------------------------------------AGTA-----------------------------T-----------AAAGAAAACAAGAAAGAACGCTATAGTCGAGT-TCCCCGACTATTAGATACCCGTTACTC----AGCCAACAAACTTCAACCTAAGTATTTCCCCTACAAAA--------CCA
droRho1 scf7180000762169:321927-322017 + TCCCAG--T-----CAACTCCAATGCTTATCTAAAGTCGGTTGGAGGCCAAATCATTTGTC-------------------------------------------------------------------------------------------------AGTTA-----------------------------------------------------------------AGACAAAATAATGTC-----------AC----------------TGCAAAA--------------------------------------------------------------------------------GTCAAGAG
droBia1 scf7180000301495:633735-633795 + GACATC--GTCCTACTTCGCAACAACTTACTACCATTTAACTGATGATGAATGTACGTTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414038:109910-110013 - CATTTA--CCACTT-TAT------------------------------ACATAAATA------------TTTTGAATTTTATTTCAAAT----------TTTT----TAACCA----------------------------------------------------------------------------------------------------------------------------------ACAAGATGCAAAAACTATAC----------------ATTATAT-TGCCAGATTGGCAAA---------------------------------------------------------TTTTAGTT
droEug1 scf7180000408984:466996-467089 - GACATC--GTCGTACTTCGCCACAACTTACTACCATTTAACTGACGATGAATGTACGTTTTAATCAGT------------AACGTAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATACTTTTC-------------------------------------------------C----TTTA-ACT
dm3 chr4:728248-728306 + GACATC--TTCATACTTCGCCACAACTTACTACCATTTAACCGATGATGAATGTACGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 4:531717-531775 + GACATC--TTCGTACTTCGCCACAACTTACTACCATTTAACTGATGATGAATGTACGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_30:445504-445562 + GACATC--TTCGTACTTCGCCACAACTTACTACCATTTAACTGATGATGAATGTACGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 4:787316-787376 + GACATC--CTCGTACTTCGCCACAACTTACTACCATTTAACTGATGATGAATGTACGTTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4512:535860-536080 - GACATC--CTCGTACTTCGCCACAACTTACTACCATTTAACTGATGATGAATGTACGTTTTTATAACTGATGCCTAGC-------AAATCCCACATCCCACTTCGAC-ACGTTTTCAGATAGCCTGA-TTG--------------------------------TAATACTGTTACAGGTCTAACCCCAAAAGATTTA-------------------------------AATTTATGCAAACTC-----------ATTGCAAACAAGAGGGAATGCTATAGTCGAGT-TCCCCGACTATCAGATACCC------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AACATC--TTCGTACTTTACCACAACCTACTATCACTTAACAGATGATGAATGTATGTTTTTA------------GTATCATCTCAAAT----------TTTT----CAATCAACTTTAATGCTTAACTCATATTTGTTAATGGCAGACGCAGACTTAAGCTCAATC--AA--------------------------------------AATA-----------------------------T-----------TGTTAACAGAAGTAAGAAGGCTCCAGTCGAGACTGCTCGACTGGGAGATACCCTGAACCCTCTAAGCTGATATTCTACTCATTCTGCACTTCTTTCAGAACG--------TGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................TGATATTCTACTCATTCTGCACTT......................24200.60121200000
.................................................................................................................................................................................................................................................................................................................................TGATATTCTACTCATTCTGCACTTCTT...................27200.408800000
..........................................................................................................................................................................................................................................................................................................................TCTAAGCTGATATTCTACTCATTCTGCAC........................29200.255500000
.................................................................................................................................................................................................................................................................................................................................TGATATTCTACTCATTCTGCACTTC.....................25200.153000030
.......................................................................................................................................................................................................................................................................................................TGGGAGATACCCTGAACCCTCTAAGC..............................................26190.112000020
...........................................................................................................................................................................................................................................................................................AGACTGCTCGACTGGGAGATACCC............................................................24200.102200000
..........................................................................................................................................................................................................................................................................................................................TCTAAGCTGATATTCTACTCATTCTGC..........................27200.051000010
...........................................................................................................................................................................................................................................................................................AGACTGCTCGACTGGGAGATACC.............................................................23200.051000010
................................................................................................................................................................................................................................................................................................GCTCGACTGGGAGATACCCTGAA........................................................23200.051100000
..........................................................................................................................................................................................................................................................................................................................TCTAAGCTGATATTCTACTCATTCTG...........................26200.051100000
...............................................................................................................................................................................................................................................................................................TGCTCGACTGGGAGATACCC............................................................20200.051100000
......................................................................................................................................................................................................................................................................................................................ACCCTCTAAGCTGATATTCTACTC.................................24200.051000010
.............................................................................................................................................................................................................................................................................................................................AAGCTGATATTCTACTCATT..............................20200.051100000
..............................................................................................................................................................................................................................................................................................CTGCTCGACTGGGAGATACCCT...........................................................22200.051100000
..............................................................................................................................................................................................................................................................................................................TACCCTGAACCCTCTAAGCTGATATT.......................................26200.051100000
..........................................................................................................................................................................................................................................................................................................................TCTAAGCTGATATTCTACTCATTCTGCA.........................28200.051100000
............................................................................................................................................................................................................................................................................................GACTGCTCGACTGGGAGATACCCTG..........................................................25200.051100000
..........................................................................................................................................................................................................................................................................................................................TCTAAGCTGATATTCTACTCATTCT............................25200.051000010
...................................................................................................................................................................................................................................................................................................................TGAACCCTCTAAGCTGATATTCTACTC.................................27200.051000010
droVir3
AACCCT--TTAATAATTTCACACAACTGCTTACT---TGAAAG------AGTGTGCGTCAA--------TTTTTGGTCTCTTCTTAAAT----------TCTT----CGACAA------------------------------GCCGACGATGAATTAG-CCTTGCA--GA--------------------------------------AATACGACTTTTACTTTTAAG--------------------------AAAAAACAAGTAAGA-GGTTCCAGTCGGGAGCTCCCGACTAGGGGATACCCTGAACCC--------------------------------------------------TCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------T.........................................................................................................................................................................................................................................................................................................24206.951390000300000200000000000001417049030020833700100000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TT........................................................................................................................................................................................................................................................................................................25205.90118001040001002100000000000202706100000005023000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCA...................................................................................................................................................................................................................................................................................................................22205.85117000000410430020000000000050932210060081002100000000000000000000000
......................CAACTGCTTACT---TGAAAG------AGTGTGC.......................................................................................................................................................................................................................................................................................................................25204.709400004521300000900000000010010100009000001700000000000000000005000
.............................TTACT---TGAAAG------AGTGTGC.......................................................................................................................................................................................................................................................................................................................18203.8577000002110410160000000000002001200000000200000000000000000000000000
......................CAACTGCTTACT---TGAAAG------AGTGTG........................................................................................................................................................................................................................................................................................................................24203.356700001801110000000000000000000200002000040000000000000000000000020
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TTT.......................................................................................................................................................................................................................................................................................................26203.256500000000000030000000000242400000020602220000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TTTT......................................................................................................................................................................................................................................................................................................27202.755500001000000010000000000001362901003000010000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TT........................................................................................................................................................................................................................................................................................................23202.15430000101001000000000020049017010005100100000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTT.......................................................................................................................................................................................................................................................................................................24201.50300000101000001000000010003214000000003040000000000000000000000000
......................CAACTGCTTACT---TGAAAG------AGTGT.........................................................................................................................................................................................................................................................................................................................23201.2525004030100000000000000000100002000500009000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------T.........................................................................................................................................................................................................................................................................................................22201.2024000000000000200000000006008020110004000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCA...................................................................................................................................................................................................................................................................................................................20200.9519000000230100000000001008200000000000020000000000000000000000000
......................CAACTGCTTACT---TGAAAG------AGTGTGCG......................................................................................................................................................................................................................................................................................................................26200.95190060100000000000000000000000010000000000200000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTC....................................................................................................................................................................................................................................................................................................................21200.9519000000010020000000000000103023040010200000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGT.....................................................................................................................................................................................................................................................................................................................20200.9018000000000060000000000000200011010021400000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------..........................................................................................................................................................................................................................................................................................................21200.8517000000000000000000000004005050001000110000000000000000000000000
............................CTTACT---TGAAAG------AGTGTGC.......................................................................................................................................................................................................................................................................................................................19200.80160000201011000000000000000010000010000000000000000000000000000000
......................CAACTGCTTACT---TGAAAG------AGT...........................................................................................................................................................................................................................................................................................................................21200.6513002040000001050000000000000010000000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTTT......................................................................................................................................................................................................................................................................................................25200.6513000000000000000000000000400000012004110000000000000000000000000
......................CAACTGCTTACT---TGAAAG------AGTGTGCGT.....................................................................................................................................................................................................................................................................................................................27200.6012000650000000000000000000000000010000000000000000000000000000000
............................CTTACT---TGAAAG------AGTGTGCGTCA...................................................................................................................................................................................................................................................................................................................23200.6012004010004000020000000000000000000010000000000000000000000000000
.......................AACTGCTTACT---TGAAAG------AGTGTGC.......................................................................................................................................................................................................................................................................................................................24200.6012007000004000000000000000100000000000000000000000000000000000000
...........................GCTTACT---TGAAAG------AGTGTGC.......................................................................................................................................................................................................................................................................................................................20200.5511000015021000000000000000001000000000001000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------..........................................................................................................................................................................................................................................................................................................23200.5511000000001000000000000000302000011010020000000000000000000000000
......................CAACTGCTTACT---TGAAAG------AGTG..........................................................................................................................................................................................................................................................................................................................22200.5511000000000000010000002000000101000400000200000000000000000000000
.........................CTGCTTACT---TGAAAG------AGTGTG........................................................................................................................................................................................................................................................................................................................21200.5010000000205000000000002000000000000010000000000000000000000000000
............................CTTACT---TGAAAG------AGTGTGCGTCAA--------TT........................................................................................................................................................................................................................................................................................................26200.459000010000000020000000000100200011010000000000000000000000000000
............................CTTACT---TGAAAG------AGTGTGCGTC....................................................................................................................................................................................................................................................................................................................22200.408003020200000000000000000100000000000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCG......................................................................................................................................................................................................................................................................................................................19200.408000020300000000000000000010001000000001000000000000000000000000
........................ACTGCTTACT---TGAAAG------AGTGTGC.......................................................................................................................................................................................................................................................................................................................23200.306000000012010000000000000001000000100000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------A.........................................................................................................................................................................................................................................................................................................24200.255000000000000000000000000030000000000200000000000000000000000000
............................CTTACT---TGAAAG------AGTGTGCGTCAA--------T.........................................................................................................................................................................................................................................................................................................25200.255001100200000000000000000000000000010000000000000000000000000000
.........................CTGCTTACT---TGAAAG------AGTGTGC.......................................................................................................................................................................................................................................................................................................................22200.255000000010100000000000001010000100000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCC...................................................................................................................................................................................................................................................................................................................22200.255000000200000000000000000002001000000000000000000000000000000000
..................CACACAACTGCTTACT---TGAAAG------AGTG..........................................................................................................................................................................................................................................................................................................................26200.255002000000000000000001000001000000010000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTTTTG....................................................................................................................................................................................................................................................................................................27200.204000000100000000000000000003000000000000000000000000000000000000
...................ACACAACTGCTTACT---TGAAAG------AGTG..........................................................................................................................................................................................................................................................................................................................25200.204000000000000110000000000000010001000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TC........................................................................................................................................................................................................................................................................................................25200.204001000000000000000000000000011010000000000000000000000000000000
........................ACTGCTTACT---TGAAAG------AGTGTG........................................................................................................................................................................................................................................................................................................................22200.204000020000000010000000000000001000000000000000000000000000000000
............................CTTACT---TGAAAG------AGTGTGCGTCAA--------..........................................................................................................................................................................................................................................................................................................24200.153000000000000000000000000003000000000000000000000000000000000000
..............................TACT---TGAAAG------AGTGTGCGTCAA--------TT........................................................................................................................................................................................................................................................................................................24200.153000000000000000000000000010020000000000000000000000000000000000
......................CAACTGCTTACT---TGAAAG------AG............................................................................................................................................................................................................................................................................................................................20200.153000010000000000000000000000000000000000200000000000000000000000
......................CAACTGCTTACT---TGAAAG------AGTGTT........................................................................................................................................................................................................................................................................................................................24200.153000000000000000000000000000000000000002000000000000000000001000
..........................TGCTTACT---TGAAAG------AGTGTGC.......................................................................................................................................................................................................................................................................................................................21200.153000000003000000000000000000000000000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TTTTT.....................................................................................................................................................................................................................................................................................................28200.153000010000000000000000000110000000000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTTTT.....................................................................................................................................................................................................................................................................................................26200.153000000000000000000000001000000100000100000000000000000000000000
............................CTTACT---TGAAAG------AGTGTG........................................................................................................................................................................................................................................................................................................................18200.153000011001000000000000000000000000000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TA........................................................................................................................................................................................................................................................................................................23200.153000000000000000000000000201000000000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTG....................................................................................................................................................................................................................................................................................................................21200.153000020001000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TAGGGGATACCCTGAACCC--------------------------------------------------T..20200.153030000000000000000000000000000000000000000000000000000000000000
..............................TACT---TGAAAG------AGTGTGCGTCAA--------TTTT......................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000001010000000000000000000000000000000000
......................................................................................AAT----------TCTT----CGACAA------------------------------GCCGACGATGAAT...................................................................................................................................................................................................................26200.102000000000000000000000000011000000000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TTTA......................................................................................................................................................................................................................................................................................................27200.102000000000000000000000000000200000000000000000000000000000000000
.................................T---TGAAAG------AGTGTGCGTCAA--------TTTTTGG...................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000001000010000000000000000000000000000000
.................TCACACAACTGCTTACT---TGAAAG------AGTG..........................................................................................................................................................................................................................................................................................................................27200.102000010000000000000000000000000001000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTTAA.....................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000001000000001000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTTA......................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000002000000000000000000000000000000000000
...........................GCTTACT---TGAAAG------AGTGTGCG......................................................................................................................................................................................................................................................................................................................21200.102001000000000000000000000000000000001000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TG........................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000001000010000000000000000000000000000000
...........................GCTTACT---TGAAAG------AGTGTGCGTC....................................................................................................................................................................................................................................................................................................................23200.102000000100000000000000000000000001000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTTTA.....................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000002000000000000000000000000000000000000
......................CAACTGCTTACT---TGAAAG------A.............................................................................................................................................................................................................................................................................................................................19200.102001000000000000000000000000000000100000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAT--------A.........................................................................................................................................................................................................................................................................................................24200.102000000000000000000000000000200000000000000000000000000000000000
............................CTTACT---TGAAAG------AGTGTGCGTCAA--------TTTT......................................................................................................................................................................................................................................................................................................28200.102002000000000000000000000000000000000000000000000000000000000000
......................CAACTGCTTACT---TGAAAG------AGTGTGA.......................................................................................................................................................................................................................................................................................................................25200.102000010000000000000000000000000000000000100000000000000000000000
............................CTTACT---TGAAAG------AGTGTGCGT.....................................................................................................................................................................................................................................................................................................................21200.102000000100000000000000000000100000000000000000000000000000000000
.....................ACAACTGCTTACT---TGAAAG------AGTGTGC.......................................................................................................................................................................................................................................................................................................................26200.102001000000000000000000000000000000000001000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TTA.......................................................................................................................................................................................................................................................................................................26200.102000010000000000000000000000000000010000000000000000000000000000
.....................................TGAAAG------AGTGTGCGTCAA--------TTTTTG....................................................................................................................................................................................................................................................................................................24200.102000000000000000000000000000200000000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TTTAA.....................................................................................................................................................................................................................................................................................................28200.102000000000000000000000000000200000000000000000000000000000000000
............................CTTACT---TGAAAG------AGTGTGCGTCAT--------..........................................................................................................................................................................................................................................................................................................24200.102001000000000000000000000100000000000000000000000000000000000000
......................................................................................AAT----------TCTT----CGACAA------------------------------GCCGACGATG......................................................................................................................................................................................................................23200.102000000000000000000000000001000000000100000000000000000000000000
...................ACACAACTGCTTACT---TGAAAG------AGTGT.........................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000000000000000200000000000000000000000000
..................................................................................................................................................................................................................................................................................TTCCAGTCGGGAGCTCCCGACTAGGGGA.................................................................28180.061000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AAAAACAAGTAAGA-GGTTCCA........................................................................................21190.051000000100000000000000000000000000000000000000000000000000000000
...................ACACAACTGCTTACT---TGAAAG------A.............................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
............................CTTACT---TGAAAG------AGTGTGCGTCG...................................................................................................................................................................................................................................................................................................................23200.051000000001000000000000000000000000000000000000000000000000000000
...CCT--TTAATAATTTCACACAACTGCTTAC..............................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
..............ATTTCACACAACTGCTTACT---TGAAAG------AG............................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000010000000000000000000000000000000000
................................CT---TGAAAG------AGTGTGCGTCAA--------TTTTA.....................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................TTAAAT----------TCTT----CGACAA------------------------------GCCGAC..........................................................................................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
........................ACTGCTTACT---TGAAAG------AGTGT.........................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
..............................TACT---TGAAAG------AGTGTGCGTCAA--------TTT.......................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................GTAAGA-GGTTCCAGTCGGGAG................................................................................21200.051000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................CGACAA------------------------------GCCGACGATGAATTA.................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAT--------AG........................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------AA........................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
.........................................AG------AGTGTGCGTCAA--------TTTTTGG...................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
.......................AACTGCTTACT---TGAAAG------AGTGTGCGT.....................................................................................................................................................................................................................................................................................................................26200.051000010000000000000000000000000000000000000000000000000000000000
.......................AACTGCTTACT---TGAAAG------AGTGT.........................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..............................TACT---TGAAAG------AGTGTGCGTCAA--------TTTTT.....................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
.................................T---TGAAAG------AGTGTGCGTCAA--------TTAA......................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
..........................TGCTTACT---TGAAAG------AGTGTG........................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTAAA.....................................................................................................................................................................................................................................................................................................26200.051000000000000000000000001000000000000000000000000000000000000000
.......................................................................................AT----------TCTT----CGACAA------------------------------GCCGACGATT......................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGA-GGTTCCAGTCGGGAGCT..............................................................................20200.051000000001000000000000000000000000000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TAAA......................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTTTG.....................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................ACAAGTAAGA-GGTTCCAGTCGGG..................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TT----CGACAA------------------------------GCCGACGATGAAT...................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
..................................................GTGTGCGTCAA--------TTTTTGGTCT................................................................................................................................................................................................................................................................................................21200.051000000000000000000000100000000000000000000000000000000000000000
......................CAACTGCTTACT---TGAAAG------AGTGTGCGC.....................................................................................................................................................................................................................................................................................................................27200.051000100000000000000000000000000000000000000000000000000000000000
.......................................AAAG------AGTGTGCGTCAA--------TTTTTGG...................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................................TCTT----CGACAA------------------------------GCCGACGATGA.....................................................................................................................................................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................GGTTCCAGTCGGGAGCTCCCG..........................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
...................ACACAACTGCTTACT---TGAAAG------AG............................................................................................................................................................................................................................................................................................................................23200.051000000000000100000000000000000000000000000000000000000000000000
.....................................TGAAAG------AGTGTGCGTCAA--------..........................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000001000000000000000000000000000000000000
..........................TGCTTACT---TGAAAG------AGTG..........................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000001000000000000000000000000
...................ACACAACTGCTTACT---TGAAAG------AGT...........................................................................................................................................................................................................................................................................................................................24200.051000000000001000000000000000000000000000000000000000000000000000
........................................................................................T----------TCTT----CGACAA------------------------------GCCGACGATGAATT..................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
.....................................................................................AAAT----------TCTT----CGACAA------------------------------GCCGACG.........................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTA.......................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000100000000000000000000000000000000
........................ACTGCTTACT---TGAAAG------AG............................................................................................................................................................................................................................................................................................................................18200.051000000000010000000000000000000000000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------A.........................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000001000000000000000000000000000000
............................CTTACT---TGAAAG------AGTGTGCGTCAA--------C.........................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................GAGCTCCCGACTAGGGGATAC..............................................................21200.051000000000000000000000000000000000100000000000000000000000000000
........................................................................................T----------TCTT----CGACAA------------------------------GCCGACG.........................................................................................................................................................................................................................18200.051000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................CAA------------------------------GCCGACGATGAATTA.................................................................................................................................................................................................................18200.051000000000000000000000000010000000000000000000000000000000000000
................TTCACACAACTGCTTACT---TGAAAG------AGT...........................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AGGGGATACCCTGAACCC--------------------------------------------------T..19200.051100000000000000000000000000000000000000000000000000000000000000
.....................ACAACTGCTTACT---TGAAAG------AGTG..........................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAT--------..........................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000010000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------GA........................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TG........................................................................................................................................................................................................................................................................................................23200.051000000000000000000000001000000000000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTC....................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000001000000000000000000000000000
..................................................GTGTGCGTCAA--------TTTTTGG...................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000010000000000000000000000000000000
......................................................................................AAT----------TCTT----CGACAA------------------------------GCCGACGATGA.....................................................................................................................................................................................................................24200.051000000000000000000000000000000010000000000000000000000000000000
.........................CTGCTTACT---TGAAAG------AGTGT.........................................................................................................................................................................................................................................................................................................................20200.051000000001000000000000000000000000000000000000000000000000000000
.................................................AGTGTGCGTCAA--------TTTTTGG...................................................................................................................................................................................................................................................................................................19200.051000000000000000000000001000000000000000000000000000000000000000
...............................ACT---TGAAAG------AGTGTGCGTCAA--------TTTTC.....................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
.............................TTACT---TGAAAG------AGTGTGCGTCAA--------TTAA......................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000001000000000000000000000000000000
.....................ACAACTGCTTACT---TGAAAG------AGTGTG........................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
AACCCT--TTAATAATTTCACACAACTGC..................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000100000000000000000000000000000000000000
.......................................................................................AT----------TCTT----CGACAA------------------------------GCCGACGATG......................................................................................................................................................................................................................22200.051000000000000000000000001000000000000000000000000000000000000000
....................................................................................TAAAT----------TCTT----CGACAA------------------------------GCCGAC..........................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
...........................GCTTACT---TGAAAG------AGTGTG........................................................................................................................................................................................................................................................................................................................19200.051000010000000000000000000000000000000000000000000000000000000000
.................................T---TGAAAG------AGTGTGCGTCAA--------TTTTT.....................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000010000000000000000000000000000000
droGri2
ATCAGTTATCA------------------------------------GGAAGGCATGATAT-ATATCTGTTAGCCAGCTTATCTCGAAT----------C--------AAATTTTTTGAAAACTTAAATTA--------------------------------TAGT--AGTTAGTGGTTAGAAGTTAAAAGAGATGGGCCTGCAACCC----------------------------------ATCGGCTCCAGAAGTTAAACATGTCTGAATGGACTAGTCGGGAGAGCTCGATTAGGAGATACCCTTAAC-------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTTTTA--G-CATGGTCCCCAATAGATGAA--------------------------------------------------------------------------------TCTACCATGTTGCTAGGCTTATATTTATTCCAAGTCAATCCTGTCTTAAATTCTAAT--GG--------------------------------------AAAA-----------------------------T-----------CG------------------------------------------------------------------------------------------------------------TTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................AATTCTAAT--GG--------------------------------------AAAA-----------------------------T-----------CG------------------------------------------------------------------------------------------------------------TTA21200.05101000
................................................................................................................................................TCAATCCTGTCTTAAATTCTAAT--GG--------------------------------------AAA...........................................................................................................................................................28200.05101000
.............................................................................................................................................................AAATTCTAAT--GG--------------------------------------AAAA-----------------------------T-----------CG------------------------------------------------------------------------------------------------------------TT.21200.05100001
dp5
GACATC--GTCGTATTTTACCACAACTTACTACCACTTAACTGATGACGAATGTATGTTTCCG------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----TCCAACTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GACATC--GTCGTATTTTACCACAACTTACTACCACTTAACTGATGACGAATGTATGTTTCCG------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----TCCAACTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GACATC--GTCATACTTCACAACAACATATTATCACTTGACTGAAGACGAATGTATGTTTTCATATGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATTGTG-----------------------------------------------------------------CAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATCATC--GTCGTACTTCACAACAACATATTATCACTTGACTGAAGACGAATGTATGTTTTCATATAA--------GCTTTTCTGCAAA----------C--------ACATTTTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAATCATTCAATCCTTTAAATAATTTGTTAASizeHit CountTotal NormTotal
No Reads
droKik1
CAAATA--CAAATTCGAT---------TAATA------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------AGCT-----------------------------T-----------TCTAAAAACAAGTAAAAAAGCTACAGTCGAATGTGTCGGACTGTAAAAGCCCCAGTAT-----------------------------------------------------CCSizeHit CountTotal NormTotal
No Reads
droFic1
GACATC--GTCGTACTTCGCCACAACTTACTACCATTTAACCGATGACGAATGTACGTTTT-ATATCT------------ATCGCAAAT----------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT-----------------------------------------------TTCCGTCCGC----T----TCASizeHit CountTotal NormTotal
No Reads
droEle1
TTGTTA--A-C-----------------------------------------------------------------------------------------------------------------------------------GTGTGAAGTGAACTTTATCCCAATA--AA--------------------------------------AGTA-----------------------------T-----------AAAGAAAACAAGAAAGAACGCTATAGTCGAGT-TCCCCGACTATTAGATACCCGTTACTC----AGCCAACAAACTTCAACCTAAGTATTTCCCCTACAAAA--------CCASizeHit CountTotal NormTotal
No Reads
droRho1
TCCCAG--T-----CAACTCCAATGCTTATCTAAAGTCGGTTGGAGGCCAAATCATTTGTC-------------------------------------------------------------------------------------------------AGTTA-----------------------------------------------------------------AGACAAAATAATGTC-----------AC----------------TGCAAAA--------------------------------------------------------------------------------GTCAAGAGSizeHit CountTotal NormTotal
No Reads
droBia1
GACATC--GTCCTACTTCGCAACAACTTACTACCATTTAACTGATGATGAATGTACGTTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CATTTA--CCACTT-TAT------------------------------ACATAAATA------------TTTTGAATTTTATTTCAAAT----------TTTT----TAACCA----------------------------------------------------------------------------------------------------------------------------------ACAAGATGCAAAAACTATAC----------------ATTATAT-TGCCAGATTGGCAAA---------------------------------------------------------TTTTAGTTSizeHit CountTotal NormTotal
No Reads
droEug1
GACATC--GTCGTACTTCGCCACAACTTACTACCATTTAACTGACGATGAATGTACGTTTTAATCAGT------------AACGTAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATACTTTTC-------------------------------------------------C----TTTA-ACTSizeHit CountTotal NormTotal
No Reads
dm3
GACATC--TTCATACTTCGCCACAACTTACTACCATTTAACCGATGATGAATGTACGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................TAACCGATGATGAATGTACGT.....................................................................................................................................................................................................................................................................................................................21110.00100000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010030000000000000000000000000000000002000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
......................................AACCGATGATGAATGTACGTT....................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
....................................TTAACCGATGATGAATGTACGT.....................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCATACTTCGCCACAACTTACTACCA............................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCATACTTCGCCACAACTTACTACCATT..........................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TTAACCGATGATGAATGTACG......................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCATACTTCGCCACAACTTACTACCA............................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TAACCGATGATGAATGTACGTTT...................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GACATC--TTCATACTTCGCCAC........................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TACTTCGCCACAACTTACTACCATTT.........................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTTAACCGATGATGAATGTACGTTT...................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCATACTTCGCCACAACTTACTACCATT..........................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCCACAACTTACTACCATTTAACCGAT..................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CCGATGATGAATGTACGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................TTTAACCGATGATGAATGTAC.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TTAACCGATGATGAATGTACGTTT...................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATTTAACCGATGATGAATGTACGTT....................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ATACTTCGCCACAACTTACTA...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ACCATTTAACCGATGATGAAT...........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTTAACCGATGATGAATGTACGT.....................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........CATACTTCGCCACAACTTACT................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CATACTTCGCCACAACTTACTACCATT..........................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTCGCCACAACTTACTACCATTTAACCGA...................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATTTAACCGATGATGAATGTA........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..............................TACCATTTAACCGATGATGAATGTACG......................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTTAACCGATGATGAATGTACG......................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................AACTTACTACCATTTAACCG....................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CGCCACAACTTACTACCATTT.........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TACTACCATTTAACCGATGATGAATG..........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GACATC--TTCGTACTTCGCCACAACTTACTACCATTTAACTGATGATGAATGTACGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........TTCGTACTTCGCCACAACTTACTACCATT..........................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
..........................................GATGATGAATGTACGTTT...................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
droSec2
GACATC--TTCGTACTTCGCCACAACTTACTACCATTTAACTGATGATGAATGTACGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GACATC--CTCGTACTTCGCCACAACTTACTACCATTTAACTGATGATGAATGTACGTTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GACATC--CTCGTACTTCGCCACAACTTACTACCATTTAACTGATGATGAATGTACGTTTTTATAACTGATGCCTAGC-------AAATCCCACATCCCACTTCGAC-ACGTTTTCAGATAGCCTGA-TTG--------------------------------TAATACTGTTACAGGTCTAACCCCAAAAGATTTA-------------------------------AATTTATGCAAACTC-----------ATTGCAAACAAGAGGGAATGCTATAGTCGAGT-TCCCCGACTATCAGATACCC------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................TATAACTGATGCCTAGC-------AAATCCCACA................................................................................................................................................................................................................................................................................2711.0011000000
......................................................................TGCCTAGC-------AAATCCCACATCCCACT.........................................................................................................................................................................................................................................................................2511.0011000000

Generated: 05/18/2015 at 12:10 AM