dmo_130

Name	Class	Family	Strand
Gypsy11-I_Dpse-int	LTR	Gypsy	-

AGACGTGGCCATCCACGTTCGATGTTGCCCGACGTGTCAACAATATAAAGTCAGTCAACGGCAGGCAGCGGGCAAGAAGAGGTTGCTTGAAGAGGTGTACCTGGCCGTATTATTGGACCGGGCACTGCCGGAGTCATCCAAGGTCACGCCCAACAC *********************************(((..(((((((..(((((...((..((((((((............)))))))).....))....)))))..)).)))))))).***********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V041 embryo	V049 head	V056 head
.................................................................................GTTGCTTGAAGAGGTGTACCTGG....................................................	23	0	3	37.33	112	108	1	3	0	0	0
...........................................TATAAAGTCAGTCAACGGCAGGC..........................................................................................	23	0	1	31.00	31	18	13	0	0	0	0
...........................................TATAAAGTCAGTCAACGGCAGG...........................................................................................	22	0	1	21.00	21	14	6	0	1	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCTGGC...................................................	24	0	3	20.00	60	44	5	8	1	1	1
...........................................TATAAAGTCAGTCAACGGCAGGCA.........................................................................................	24	0	1	20.00	20	20	0	0	0	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCTGGCC..................................................	25	0	3	10.67	32	29	1	1	1	0	0
...........................................TATAAAGTCAGTCAACGGCAGGCAGC.......................................................................................	26	0	1	7.00	7	5	2	0	0	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCTG.....................................................	22	0	3	6.67	20	18	2	0	0	0	0
...........................................TATAAAGTCAGTCAACGGCAGGCAG........................................................................................	25	0	1	5.00	5	5	0	0	0	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCT......................................................	21	0	3	4.33	13	7	2	3	1	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCTGGCCG.................................................	26	0	3	3.00	9	6	0	3	0	0	0
...........................................TATAAAGTCAGTCAACGGCA.............................................................................................	20	0	1	2.00	2	2	0	0	0	0	0
............................................ATAAAGTCAGTCAACGGCAGGC..........................................................................................	22	0	1	2.00	2	2	0	0	0	0	0
...........................................TATAAAGTCAGTCAACGGCAGGCAT........................................................................................	25	1	1	2.00	2	2	0	0	0	0	0
...........................................TATAAAGTCAGTCAACGGCAGGCAGCGG.....................................................................................	28	0	1	2.00	2	2	0	0	0	0	0
...........................................TATAAAGTCAGTCAACGGCAGGCAGTT......................................................................................	27	2	1	1.00	1	0	1	0	0	0	0
...............................................AAGTCAGTCAACGGCAGGCAGC.......................................................................................	22	0	1	1.00	1	0	1	0	0	0	0
............CCACGTTCGATGTTGCCCGACG..........................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCTGGCCGT................................................	27	0	3	1.00	3	3	0	0	0	0	0
............................................ATAAAGTCAGTCAACGGCAGGCAGCGG.....................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
...........................................TATAAAGTCAGTCAACGGCAG............................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
................................................................................GGTTGCTTGAAAAGGTGTACCTGGC...................................................	25	1	1	1.00	1	1	0	0	0	0	0
...........................................TATAAAGTCAGTCAACGGCAGGCAAC.......................................................................................	26	1	1	1.00	1	0	1	0	0	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCTGGCCGTA...............................................	28	0	1	1.00	1	1	0	0	0	0	0
.........................................................................AAGAAGAGGTTGCTTGAAGAG..............................................................	21	0	1	1.00	1	1	0	0	0	0	0
...........................................TGTAAAGTCAGTCAACGGCAGGCAGC.......................................................................................	26	1	1	1.00	1	0	1	0	0	0	0
...................................................CAGTCAACGGCAGGCAGCGGGCAT.................................................................................	24	1	1	1.00	1	1	0	0	0	0	0
.................................................................................GTTGCTTGAAGAGGTGTACC.......................................................	20	0	3	1.00	3	0	3	0	0	0	0
............................................ATAAAGTCAGTCAACGGCAGGCA.........................................................................................	23	0	1	1.00	1	1	0	0	0	0	0
..................................................TCAGTCAACGGCAGGCAG........................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
...................................................................................TGCTTGAAGAGGTGTACCTGGCCGTAT..............................................	27	0	1	1.00	1	1	0	0	0	0	0
..................................................................................TTGCTTGAAGAGGTGTACCTG.....................................................	21	0	3	0.67	2	2	0	0	0	0	0
.................................................................................GGTGCTTGAAGAGGTGTACCTGG....................................................	23	1	3	0.67	2	0	2	0	0	0	0
.........................................................................................................................................CCAAGGTCACGCCCAACAC	19	0	3	0.67	2	2	0	0	0	0	0
..................................................................................TTGCTTGAAGAGGTGTACCTGG....................................................	22	0	3	0.67	2	2	0	0	0	0	0
.................................................................................GTTGCTTGAAGGGGTGTACCTGG....................................................	23	1	3	0.33	1	1	0	0	0	0	0
.................................................................................GTTTCTTGAAGAGGTGTACCTGGC...................................................	24	1	3	0.33	1	0	1	0	0	0	0
.................................................................................GTTGCTTGAAGGGGTGTACCTGGC...................................................	24	1	3	0.33	1	1	0	0	0	0	0
.............................................................................................................................TGCCGGAGTCATCCAAGGTCACG........	23	0	3	0.33	1	1	0	0	0	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCTC.....................................................	22	1	3	0.33	1	1	0	0	0	0	0
.................................................................................GTTGCTTGAAGAGGTCTACCC......................................................	21	2	3	0.33	1	0	1	0	0	0	0
.................................................................................GTTTCTTGAAGAGGTGTACCTGGCC..................................................	25	1	3	0.33	1	0	1	0	0	0	0
.................................................................................GGTGCTTGAAGAGGTGTACCTGGC...................................................	24	1	3	0.33	1	0	1	0	0	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCTGGCCT.................................................	26	1	3	0.33	1	0	1	0	0	0	0
................................................................................TGTTGCTTGAAGCGGTGTACCTGGC...................................................	25	2	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................GTCATCCAAGGTCACGCCCAA...	21	0	3	0.33	1	1	0	0	0	0	0
.................................................................................GTGGCTTGAAGAGGTGTACCTGG....................................................	23	1	3	0.33	1	1	0	0	0	0	0
.................................................................................GTTGCTTTAAGAGGTGTACCTGGC...................................................	24	1	3	0.33	1	1	0	0	0	0	0
...................................................................................TGCTTGAAGAGGTGTACCTGG....................................................	21	0	3	0.33	1	1	0	0	0	0	0
.................................................................................GGTGCTTGAAGAGGTGTACCT......................................................	21	1	3	0.33	1	0	1	0	0	0	0
........................................................................................................................................TCCAAGGTCACGCCCAACA.	19	0	3	0.33	1	1	0	0	0	0	0
..................................................................................TTGCTTGAAGAGGTGTACCTGGC...................................................	23	0	3	0.33	1	1	0	0	0	0	0
.................................................................................GGTGCTTGAAGAGGTGTACCTG.....................................................	22	1	3	0.33	1	0	1	0	0	0	0
.................................................................................GTTGCTTGAAGAGGCGTACCTGG....................................................	23	1	3	0.33	1	1	0	0	0	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCTGGCTC.................................................	26	2	3	0.33	1	1	0	0	0	0	0
.................................................................................GTTGCTTGAAGAGGTGTACCC......................................................	21	1	3	0.33	1	0	1	0	0	0	0
.................................................................................GGTGCTTGAAGAGGTGTACCTGGCC..................................................	25	1	3	0.33	1	0	1	0	0	0	0
.................................................................................GTTGCTTGAGGAGGTGTACCTGGC...................................................	24	1	3	0.33	1	0	1	0	0	0	0
.................................................................................GTTTCTTGAAGAGGTGTACC.......................................................	20	1	3	0.33	1	0	1	0	0	0	0
....................................................................................................................ACCGGGCACTGCCGGAGTCA....................	20	0	5	0.20	1	1	0	0	0	0	0
......................................................TCTAAGGAAGGCAGCGGGC...................................................................................	19	3	13	0.08	1	0	1	0	0	0	0

TCTGCACCGGTAGGTGCAAGCTACAACGGGCTGCACAGTTGTTATATTTCAGTCAGTTGCCGTCCGTCGCCCGTTCTTCTCCAACGAACTTCTCCACATGGACCGGCATAATAACCTGGCCCGTGACGGCCTCAGTAGGTTCCAGTGCGGGTTGTG ***********************************(((..(((((((..(((((...((..((((((((............)))))))).....))....)))))..)).)))))))).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo	V110 male body	V056 head	V049 head
...........................GGGCTGCACAGTTGTTATATTTCAGT.......................................................................................................	26	0	3	136.33	409	376	21	8	4	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCAGT..........	25	0	3	125.67	377	253	121	3	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGAACTT.................................................................	27	0	1	124.00	124	52	72	0	0	0	0
.................................................................GTCGCCCGTTCTTCTCCAACGAACTT.................................................................	26	0	1	84.00	84	74	10	0	0	0	0
...................................................................CGCCCGTTCTTCTCCAACGAACTT.................................................................	24	0	1	72.00	72	50	22	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTTCCAGT..........	26	0	3	64.00	192	88	104	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTCAGTAGGTTCCAGT..........	29	0	3	62.00	186	103	81	1	1	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTCCAGT..........	27	0	3	59.00	177	73	104	0	0	0	0
..........................................................................................................................GTGACGGCCTCAGTAGGTTCCAGT..........	24	0	3	43.67	131	120	10	1	0	0	0
.............................GCTGCACAGTTGTTATATTTCAGT.......................................................................................................	24	0	3	38.33	115	104	7	2	2	0	0
..................................................................TCGCCCGTTCTTCTCCAACGAACTT.................................................................	25	0	1	37.00	37	18	19	0	0	0	0
......................................................................................................................GCCCGTGACGGCCTCAGTAGGTTCCAGT..........	28	0	3	35.33	106	79	25	2	0	0	0
...............................................................CCGTCGCCCGTTCTTCTCCAACGAACTT.................................................................	28	0	1	35.00	35	11	24	0	0	0	0
.....................................................................CCCGTTCTTCTCCAACGAACTT.................................................................	22	0	1	25.00	25	5	20	0	0	0	0
...........................................................................................................................TGACGGCCTCAGTAGGTTCCAGT..........	23	0	3	21.00	63	48	13	2	0	0	0
....................................................................GCCCGTTCTTCTCCAACGAACTT.................................................................	23	0	1	16.00	16	10	4	1	1	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCATT..........	25	1	3	11.00	33	0	33	0	0	0	0
............................GGCTGCACAGTTGTTATATTTCAGT.......................................................................................................	25	0	3	9.67	29	26	2	1	0	0	0
...........................GGGCTGCACAGTTGTTATATTTCAG........................................................................................................	25	0	3	9.33	28	28	0	0	0	0	0
..........................CGGGCTGCACAGTTGTTATATTTCAGT.......................................................................................................	27	0	3	9.33	28	15	6	5	2	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGAACGT.................................................................	27	1	1	9.00	9	0	9	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTTCCATT..........	26	1	3	8.67	26	0	26	0	0	0	0
............................................................................................................................GACGGCCTCAGTAGGTTCCAGT..........	22	0	3	8.33	25	25	0	0	0	0	0
.................................................................GTCGCCCGTTCTTCTCCAACGAACT..................................................................	25	0	1	7.00	7	7	0	0	0	0	0
..............................CTGCACAGTTGTTATATTTCAGT.......................................................................................................	23	0	3	7.00	21	17	4	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTCCATT..........	27	1	3	6.67	20	0	20	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCAG...........	24	0	3	6.33	19	18	1	0	0	0	0
..................................................................CCGCCCGTTCTTCTCCAACGAACTT.................................................................	25	1	1	6.00	6	0	6	0	0	0	0
......................................................................CCGTTCTTCTCCAACGAACTT.................................................................	21	0	1	6.00	6	1	5	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTCAGTAGGTTCCATT..........	29	1	3	5.00	15	0	15	0	0	0	0
.........................ACGGGCTGCACAGTTGTTATATTTCAGT.......................................................................................................	28	0	3	4.33	13	13	0	0	0	0	0
.................................................................GTCGCCCGTTCTTCTCCAACGAACGT.................................................................	26	1	1	4.00	4	0	4	0	0	0	0
.....................................................................CCCGTTCTTCTCCAACGAACGT.................................................................	22	1	1	4.00	4	0	4	0	0	0	0
.....................................................................CCCGTTCTTCTCCAACGAAATT.................................................................	22	1	1	4.00	4	0	4	0	0	0	0
...................................................................CGCCCGTTCTTCTCCAACGAACT..................................................................	23	0	1	4.00	4	4	0	0	0	0	0
.............................................................................................................................ACGGCCTCAGTAGGTTCCAGT..........	21	0	3	3.33	10	10	0	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTTCCAG...........	25	0	3	3.33	10	8	2	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTCAGTAGGTTCCAG...........	28	0	3	3.00	9	7	2	0	0	0	0
...............................................................CCGTCGCCCGTTCTTCTCCAACGAACGT.................................................................	28	1	1	3.00	3	0	3	0	0	0	0
...................................................................CGCCCGTTCTTCTCCAACGAACGT.................................................................	24	1	1	3.00	3	0	3	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGAACTTC................................................................	28	0	1	3.00	3	3	0	0	0	0	0
..........................................................................................................................GTGACGGCCTCAGTAGGTTCCAG...........	23	0	3	3.00	9	9	0	0	0	0	0
.............................GCTGCACAGTTGTTATATTTCAG........................................................................................................	23	0	3	2.67	8	8	0	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTCAGTAGGTTCTAGT..........	29	1	3	2.67	8	0	8	0	0	0	0
..........................................................................................................................GTGACGGCCTCAGTAGGTTCCATT..........	24	1	3	2.33	7	0	7	0	0	0	0
..................................................................TCGCCCGTTCTTCTCCAACGAACGT.................................................................	25	1	1	2.00	2	0	2	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAAC.......................................................................	21	0	1	2.00	2	0	2	0	0	0	0
..............................................................................................................................CGGCCTCAGTAGGTTCCAGT..........	20	0	3	2.00	6	4	2	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGAACT..................................................................	26	0	1	2.00	2	2	0	0	0	0	0
...............................................................ACGTCGCCCGTTCTTCTCCAACGAACTT.................................................................	28	1	1	2.00	2	2	0	0	0	0	0
...............................TGCACAGTTGTTATATTTCAGT.......................................................................................................	22	0	3	2.00	6	4	0	0	2	0	0
.....................................................................................................................TGCCCGTGACGGCCTCAGTAGGTTCCAGT..........	29	1	3	2.00	6	3	3	0	0	0	0
.................................................................GTCGCCCGTTCTTCTCCAACCAACTT.................................................................	26	1	1	2.00	2	1	1	0	0	0	0
.....................................................................................................................AGCCCGTGACGGCCTCAGTAGGTTCCAGT..........	29	1	3	2.00	6	3	3	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTCCAG...........	26	0	3	1.67	5	4	1	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTTCATT.......................................................................................................	26	1	3	1.67	5	0	5	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTTCTAGT..........	26	1	3	1.67	5	0	5	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCAGTC.........	26	1	3	1.67	5	1	4	0	0	0	0
.........................................................................................................................GGGGACGGCCTCAGTAGGTTCCAGT..........	25	2	3	1.67	5	0	0	5	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCTAGT..........	25	1	3	1.33	4	0	4	0	0	0	0
......................................................................................................................GCCCGTGACGGCCTCAGTAGGTTCCATT..........	28	1	3	1.33	4	0	4	0	0	0	0
.........................................................................................................................CGGGACGGCCTCAGTAGGTTCCAGT..........	25	1	3	1.33	4	1	0	3	0	0	0
.....................................................................CCCCTCCTTCTCCAACGAACTT.................................................................	22	2	1	1.00	1	0	1	0	0	0	0
............................................................................................................................GACGGCCTCAGTAGGTTCCAG...........	21	0	3	1.00	3	3	0	0	0	0	0
..................................................................TCGCCCGTTCTTCTCTAACGAACTT.................................................................	25	1	1	1.00	1	0	1	0	0	0	0
..........................CGGGCTGCACAGTTGTTATATTTCAG........................................................................................................	26	0	3	1.00	3	3	0	0	0	0	0
.CTGCACCGGTAGGTGCAAGCTACAAC.................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
.........GTAGGTGCGAGCTACAACGGGCT............................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0
...............................................................CCGTCGCCCGTTCTTCTCCAACGAACTTC................................................................	29	0	1	1.00	1	0	1	0	0	0	0
...................................................................CGCCCGTTTTTCTCCAACGTACGT.................................................................	24	3	1	1.00	1	0	1	0	0	0	0
....................................................................................CGAACTTCTCCACATGGACCGGCATAAT............................................	28	0	1	1.00	1	1	0	0	0	0	0
...................................................................CGCCCGTTCTTCTCCAACGAAATT.................................................................	24	1	1	1.00	1	0	1	0	0	0	0
...............................................................CCGTCGCCCGTTCTTCTCCAACGAAATT.................................................................	28	1	1	1.00	1	0	1	0	0	0	0
..................................................................CCGCCCGTTCTTCTCCAACGAACGT.................................................................	25	2	1	1.00	1	0	1	0	0	0	0
..................................................................TCGCCCGTTCTTATCCAACGAACTT.................................................................	25	1	1	1.00	1	0	1	0	0	0	0
.....................................................................CCCGTTCTTCTCCAACGAACTTC................................................................	23	0	1	1.00	1	0	1	0	0	0	0
...................................................................CGCCCGTTCTTCTCCAACGAACTTT................................................................	25	1	1	1.00	1	1	0	0	0	0	0
..................................................................TCGCCCGTTCTTCTACAACGAACTT.................................................................	25	1	1	1.00	1	0	1	0	0	0	0
.........................................................................TTCTTCTCCAACGAACTTCTCCACAT.........................................................	26	0	1	1.00	1	0	1	0	0	0	0
..................................................................TCGCCCGTTCTTCTCCAACGAAATT.................................................................	25	1	1	1.00	1	0	1	0	0	0	0
................................................................CGTCGCCCTTTCTTCTCCAACGAACTT.................................................................	27	1	1	1.00	1	0	1	0	0	0	0
........................................................................................................................CAGTGACGGCCTCAGTAGGTTCCAGT..........	26	1	3	1.00	3	0	3	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACCAACGT.................................................................	27	2	1	1.00	1	0	1	0	0	0	0
.........................................................................................TTCTACACATGGACCCTCATAAT............................................	23	3	1	1.00	1	0	0	0	0	1	0
.......................................................................CGTTCTTCTCCAACGAACTT.................................................................	20	0	1	1.00	1	0	1	0	0	0	0
...................................................................CGCCCGTTCTTCTCCAACTAACTT.................................................................	24	1	1	1.00	1	0	1	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGTACTT.................................................................	27	1	1	1.00	1	0	1	0	0	0	0
...............................................................CCGTCGCCCGTTCTTCTCCAACGAACT..................................................................	27	0	1	1.00	1	0	1	0	0	0	0
.................................................................GTCGCCCGTTCTTCTCCAACGAACTTT................................................................	27	1	1	1.00	1	1	0	0	0	0	0
...............................................................CCGTCGCCCGTTCTTCTCCAACGAACCT.................................................................	28	1	1	1.00	1	0	1	0	0	0	0
..................................................................CGTCCCGTTCTTCTCCAACGAACTT.................................................................	25	3	1	1.00	1	0	1	0	0	0	0
................................GCACAGTTGTTATATTTCAGT.......................................................................................................	21	0	3	1.00	3	3	0	0	0	0	0
........................................................................................................................TCGTGACGGCCTCAGTAGGTTCCAGT..........	26	1	3	1.00	3	2	1	0	0	0	0
...............................................................CCGTCGCCCGTTCTTCTC...........................................................................	18	0	1	1.00	1	0	1	0	0	0	0
......CCGGTAGGTGCAAGCTACAACGGGCT............................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
...............................................................CCGTCGCCCGTTCTTCTCCAACGCACTT.................................................................	28	1	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................CGTGACGGCCTCCGTAGGTTCCAGT..........	25	1	3	1.00	3	0	3	0	0	0	0
.........................................................................................CTGTCCACATGGACGGGCATAAT............................................	23	3	1	1.00	1	0	0	0	0	1	0
.....ACCGGTAGGTGCAAGCTAC....................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0
..................................................................CCGCCCTTTCTTCTCCAACGAACTT.................................................................	25	2	1	1.00	1	0	1	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACTAACTT.................................................................	27	1	1	1.00	1	0	1	0	0	0	0
..................................................................CCGCCCGTTCTTCTCCAACGATCTT.................................................................	25	2	1	1.00	1	0	1	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGA.....................................................................	23	0	1	1.00	1	0	1	0	0	0	0
......................................................................CCGTTCTTCTCCAACGAACTA.................................................................	21	1	1	1.00	1	0	1	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGAAATT.................................................................	27	1	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................TCCGTGACGGCCTCAGTAGGTTCCAGT..........	27	1	3	1.00	3	3	0	0	0	0	0
..................................................................TCGCCCGTCCTTCTCCAACGAACGT.................................................................	25	2	1	1.00	1	0	1	0	0	0	0
..................................................................TCGCCCGTTCTTCTCCAACGAACTA.................................................................	25	1	1	1.00	1	0	1	0	0	0	0
........................................................................GTTCTTCTCCAACGAACTT.................................................................	19	0	1	1.00	1	1	0	0	0	0	0
..........................................................................TCTTCTCCAACGAACTTCTCCACAT.........................................................	25	0	1	1.00	1	1	0	0	0	0	0
.................................................................GTCGCCCGTTCTTCGCCAACGAACTT.................................................................	26	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................CCACATGGACCGGCATAATAACCT.......................................	24	0	1	1.00	1	1	0	0	0	0	0
....................................AGTTGTTATATTTCAGTCAGTTGCC...............................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
..................................................................CCGCCCGTTCTTCTCCAACGAACTTCTAG.............................................................	29	3	1	1.00	1	0	1	0	0	0	0
.CTGCACCGGTAGGTGCAAGCTACAA..................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
................................................................CGTCCCCCGTTCTTCTCCAACGAAATT.................................................................	27	2	1	1.00	1	0	1	0	0	0	0
...................................................................CGCCCGTTCTTCTCCAACGAA....................................................................	21	0	1	1.00	1	1	0	0	0	0	0
....................................................................GCCCGTTCTTCTCCACCGAACTT.................................................................	23	1	1	1.00	1	0	1	0	0	0	0
...............................................................CCGTCGCCCGATCTTCTCCAACGAACTT.................................................................	28	1	1	1.00	1	0	1	0	0	0	0
................................................................CGTCGCCCGTTTTTCTCCAACGAACTT.................................................................	27	1	1	1.00	1	0	1	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGATCTT.................................................................	27	1	1	1.00	1	0	1	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGATCGT.................................................................	27	2	1	1.00	1	0	1	0	0	0	0
..................................................................TCGCCCGTTCTTCTCCAACGAACT..................................................................	24	0	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTCTAGT..........	27	1	3	1.00	3	0	3	0	0	0	0
.................................................................GTCGCCCGTTCTTCTCCAACGAA....................................................................	23	0	1	1.00	1	1	0	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGGACTT.................................................................	27	1	1	1.00	1	0	1	0	0	0	0
.................................................................TTCGCCCGTTCTTCTCCAACGAACTT.................................................................	26	1	1	1.00	1	0	1	0	0	0	0
................................................................CATCGCCCGTTCTTCTCCAACGAACTT.................................................................	27	1	1	1.00	1	0	1	0	0	0	0
..................................................................TCGCCCGTTCTTCTCCAACGAACTTC................................................................	26	0	1	1.00	1	0	1	0	0	0	0
................................................................CGTCGCCCGTTCTTCTCCAACGAAGTT.................................................................	27	1	1	1.00	1	0	1	0	0	0	0
................................................................................................CATGGACCGGCATAATAACCTGG.....................................	23	0	1	1.00	1	0	1	0	0	0	0
.....................................................................CACGTTCTTCTCCAACGAACTT.................................................................	22	1	1	1.00	1	0	1	0	0	0	0
..................................................................TCGCCCGTTCTTCGCCAACGAACTT.................................................................	25	1	1	1.00	1	1	0	0	0	0	0
.............................GCTGCACAGTTGTTATATTTCA.........................................................................................................	22	0	3	0.67	2	2	0	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTTTAGT.......................................................................................................	26	1	3	0.67	2	1	1	0	0	0	0
...........................CGGCTGCACAGTTGTTATATTTCAGT.......................................................................................................	26	1	3	0.67	2	0	2	0	0	0	0
......................................................................................................................GCCCGTGACGGCCTCAGTAGGTTCCAG...........	27	0	3	0.67	2	2	0	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTCAGTAGGTTC..............	25	0	3	0.67	2	0	2	0	0	0	0
......................................................................................................................TCCCGTGACGGCCTCAGTAGGTTCCAGT..........	28	1	3	0.67	2	1	1	0	0	0	0
..........................CGGGCTGCACAGTTGTTATATTTTAGT.......................................................................................................	27	1	3	0.67	2	0	2	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCTATT..........	25	2	3	0.67	2	0	2	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTCAGTAGGTTCCACT..........	29	1	3	0.67	2	0	2	0	0	0	0
................................GCACAGTTGTTATATTTCAGTCAGT...................................................................................................	25	0	3	0.67	2	2	0	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTCCAGC..........	27	1	3	0.67	2	0	2	0	0	0	0
........................................................................................................................CCGGGACGGCCTCAGTAGGTTCCAGT..........	26	1	3	0.67	2	0	1	1	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTTCCAGTCT........	28	2	3	0.67	2	0	2	0	0	0	0
.....................................................................................................................CGCCCGTGACGGCCTCAGTAGGTTCCAGT..........	29	1	3	0.67	2	0	2	0	0	0	0
............................GGCTGCACAGTTGTTATATTTCAG........................................................................................................	24	0	3	0.67	2	2	0	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCCGT..........	25	1	3	0.67	2	0	2	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCAGC..........	25	1	3	0.67	2	1	1	0	0	0	0
............................GGCTGCACAGTTGTTATATTTCATT.......................................................................................................	25	1	3	0.67	2	0	2	0	0	0	0
...............................................................................................................................GGCCTCAGTAGGTTCCAGT..........	19	0	3	0.67	2	2	0	0	0	0	0
.................................CACAGTTGTTATATTTCAGT.......................................................................................................	20	0	3	0.67	2	1	1	0	0	0	0
.....................................................................................................................CGCCCGTGACGGCCTCAGTAGGTTCCATT..........	29	2	3	0.67	2	0	2	0	0	0	0
...........................................................................................GTCCACATGGACTGTCATAAT............................................	21	3	4	0.50	2	0	0	0	0	2	0
..........................................................................................TCTCGACAAGGACGGGCATAAT............................................	22	3	2	0.50	1	0	0	0	0	1	0
...........................GGGCTGCACAGTTGTTAT...............................................................................................................	18	0	4	0.50	2	2	0	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTGCCAGT..........	26	1	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................GGTGACGGCCTCAGTAGGTTCCAGT..........	25	1	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCAGTCT........	27	2	3	0.33	1	0	1	0	0	0	0
..........................CGGGCTGCACAGTTGTTATATTTCATT.......................................................................................................	27	1	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................CCCGTGACGGCTTCAGTAGGTTCCAGT..........	27	1	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................CGTGACGCCCTCAGTAGGTTCCAGT..........	25	1	3	0.33	1	0	1	0	0	0	0
......................................................................................................................CCCCGTGACGGCCTCAGTAGGTTCCAGT..........	28	1	3	0.33	1	0	1	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTTC..........................................................................................................	23	0	3	0.33	1	1	0	0	0	0	0
............................................................................................................................GACGGCCTCAGTAGGTTCCAGTGCG.......	25	0	3	0.33	1	1	0	0	0	0	0
......................................................................................................................GCCCGTGACGGCCTCAGTAGGTTCCAGTT.........	29	1	3	0.33	1	1	0	0	0	0	0
.............................GCTGCACAGTTGGTATATTTCAGT.......................................................................................................	24	1	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................TGACGGCCTCAGTAGGTTCTAGT..........	23	1	3	0.33	1	0	1	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTTCCCGT..........	26	1	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCA............	23	0	3	0.33	1	1	0	0	0	0	0
...........................GGGCTGCACGGTTGTTATATTTCAGT.......................................................................................................	26	1	6	0.33	2	2	0	0	0	0	0
..........................................................................................................................GTGACGGCCTCAGTAGGTTCCA............	22	0	3	0.33	1	1	0	0	0	0	0
......................................................................................................................TCCCGTGACGGCCTCAGTAGGTTCCATG..........	28	3	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCCCAGTAGGTTCCAGT..........	29	1	3	0.33	1	1	0	0	0	0	0
............................GGCTGCACAGTTGTTATATTTCAGTA......................................................................................................	26	1	3	0.33	1	1	0	0	0	0	0
......................................................................................................................CTCCGTGACGGCCTCAGTAGGTTCCAG...........	27	2	3	0.33	1	1	0	0	0	0	0
......................................................................................................................TCCCGTGACGGCCTCAGTAGGTTCCATT..........	28	2	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................CCCGTGACCGCCTCAGTAGGTTCCAGT..........	27	1	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTCCA............	25	0	3	0.33	1	0	1	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTTCCGGT..........	26	1	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCATTAGGTTCCAGT..........	27	1	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTCAGTAGGTTCCA............	27	0	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................CCCGTGACGGCCCCAGTAGGTTCCAG...........	26	1	3	0.33	1	1	0	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTTCAAT.......................................................................................................	26	1	3	0.33	1	0	1	0	0	0	0
...........................GGGCTGCAAAGTTGTTATATTTCAGT.......................................................................................................	26	1	3	0.33	1	1	0	0	0	0	0
......................................................................................................................GCCCGTGACGGCCTCAGTAGGTTCTAGT..........	28	1	3	0.33	1	0	1	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTTCA.........................................................................................................	24	0	3	0.33	1	1	0	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTTCCTGTC.........	27	2	3	0.33	1	0	1	0	0	0	0
..............................CTGCACAGTAGTTATATTTCAGT.......................................................................................................	23	1	3	0.33	1	0	1	0	0	0	0
..........................ACGGCTGCACAGTTGTTATATTTCAGT.......................................................................................................	27	2	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................GGTCCGTGACGGCCTCAGTAGGTTCCAGT..........	29	1	3	0.33	1	0	1	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGTTTCCAGT..........	26	1	3	0.33	1	1	0	0	0	0	0
........................................................................................................................TCGTGACGGCCTCAGTAGGTTCCATT..........	26	2	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCAGTATA.......	28	3	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTCTATT..........	27	2	3	0.33	1	0	1	0	0	0	0
.............................GCTGCACATTTGTTATATTTCAGT.......................................................................................................	24	1	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTCCAAT..........	27	1	3	0.33	1	0	1	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTT...........................................................................................................	22	0	3	0.33	1	1	0	0	0	0	0
......................................................................................................................TCCCGTGACGGCCTCAGTAGGTTCCAAT..........	28	2	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGCAGGTTCCAGT..........	27	1	3	0.33	1	0	1	0	0	0	0
......................................................................................................................GCCCGTGACGGCCTCAGTAGGTTCCAGTC.........	29	1	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTCAGTAGCTTCCAGT..........	29	1	3	0.33	1	1	0	0	0	0	0
........................................................................................................................CCGTGACCGCCTCAGTAGGTTCCAGT..........	26	1	3	0.33	1	0	1	0	0	0	0
.............................GCTGCACAGTTGTTATATTTTCGT.......................................................................................................	24	2	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................GTGACGGCCTCGGTAGGTTCCAG...........	23	1	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................GGCCCGTGACGACCTCAGTAGGTTCCAGT..........	29	1	3	0.33	1	0	1	0	0	0	0
................................................................................................................................GCCTCAGTAGGTTCCAGT..........	18	0	3	0.33	1	0	0	1	0	0	0
................................GCACAGTTGTTATATTTCAGTCAGTT..................................................................................................	26	0	3	0.33	1	1	0	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCAGG..........	25	1	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGGTTCCAAT..........	25	1	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................GTGACGGCCTCAGTAGGTTCCAGTG.........	25	0	3	0.33	1	1	0	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTTCAGTC......................................................................................................	27	0	3	0.33	1	1	0	0	0	0	0
............................................................................................................................GACTGCCTCAGTAGGTTCCAGT..........	22	1	3	0.33	1	0	1	0	0	0	0
.........................ACGGGCTGCACAGTTGTTATATTTCAG........................................................................................................	27	0	3	0.33	1	1	0	0	0	0	0
.........................................................................................................................CGTGACCGCCTCAGTAGGTTCCAGT..........	25	1	3	0.33	1	0	1	0	0	0	0
.............................................................................................................................ACGGCCTCAATAGGTTCCAGT..........	21	1	3	0.33	1	1	0	0	0	0	0
...........................GGGCTGCACAGTTGATATATTTCAGT.......................................................................................................	26	1	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................TGACGGCCTCAGTAGGTTCCAG...........	22	0	3	0.33	1	1	0	0	0	0	0
......................................................................................................................GCCCGTGACGGCCTCAGTAGGTTTCAGT..........	28	1	3	0.33	1	0	1	0	0	0	0
........................................................................................................................CAGTGACGGCCTCAGTAGGTTCCAAT..........	26	2	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GGCCCGTGACGACCTCAGTAGGTTCTAGT..........	29	2	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GGCCCGTGACTGCCTCAGTAGGTTCTAGT..........	29	2	3	0.33	1	0	1	0	0	0	0
......................................................................................................................CCCCCGGACGGCCTCAGTAGGTTCCAGT..........	28	3	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................CGGGACGGCCTCAGTAGGTTCCATT..........	25	2	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GGCCCTTGACGGCCTCAGTAGGTTCCAGT..........	29	1	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTCAGTAGGTTTCAGT..........	29	1	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GTCCCGTGACGGCCTCAGTAGGTTCCAGT..........	29	1	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................GTTGACGGCCTCAGTAGGTTCCAGT..........	25	2	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTGAGTAGGTTCCATT..........	29	2	3	0.33	1	0	1	0	0	0	0
............................................................................................................................CACGGCCTCAGTAGGTTCCATT..........	22	2	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................CGTGACGGCCTCAGTAGCTTCCAGT..........	25	1	3	0.33	1	1	0	0	0	0	0
...........................GGTCTGCACAGTTGTTATATTTCAGT.......................................................................................................	26	1	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................CACGTGACGGCCTCAGTAGGTTCCAGT..........	27	1	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................CCCGTCACGGCCTCAGTAGGTTCCAGT..........	27	1	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................TGCCCGTGACGGCCTCAGTAGGTTCCATT..........	29	2	3	0.33	1	0	1	0	0	0	0
......................................................................................................................GCCCGTGACGGCCTCAGTATGTTCCAGT..........	28	1	3	0.33	1	0	1	0	0	0	0
......................................................................................................................GCCCGTGACGGCCTCAGTAGGTTCCAGTG.........	29	0	3	0.33	1	1	0	0	0	0	0
..............................................................................................................................CAGCCTCAGTAGGTTCCAGT..........	20	1	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GGCCCCTGACGGCCTCAGTAGGTTCCAGT..........	29	1	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTTGGTTCCATT..........	27	2	3	0.33	1	0	1	0	0	0	0
...........................GGGCTGCACAGTTGTTATA..............................................................................................................	19	0	3	0.33	1	1	0	0	0	0	0
......................................................................................................................GCCCCTGACGGCCTCAGTAGGTTCCATT..........	28	2	3	0.33	1	0	1	0	0	0	0
......................................................................................................................GCCCGTGATGGCCTCAGTAGGTTCCAGT..........	28	1	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTTCAGT..........	27	1	3	0.33	1	0	1	0	0	0	0
...........................GTGCTGCACAGTTGTTATATTTCAGT.......................................................................................................	26	1	3	0.33	1	0	1	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTTCAGG.......................................................................................................	26	1	3	0.33	1	1	0	0	0	0	0
...........................GGGCTGCACAGTTGTTATCTTTCAGT.......................................................................................................	26	1	3	0.33	1	0	1	0	0	0	0
......................................................................................................................TTCCGTGACGGCCTCAGTAGGTTCCATT..........	28	3	3	0.33	1	0	1	0	0	0	0
........................................................................................................................CGGTGACGGCCTCAGTAGGTTCCAGT..........	26	1	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTCCACT..........	27	1	3	0.33	1	0	1	0	0	0	0
............................................................................................................................GACGGCCTCAGTAGGTTCCATT..........	22	1	3	0.33	1	0	1	0	0	0	0
...........................GGGCTGCAAAATTGTTATATTTCAGT.......................................................................................................	26	2	3	0.33	1	0	0	1	0	0	0
.............................GCTGCTCAGTTGTTATATTTCAGT.......................................................................................................	24	1	3	0.33	1	1	0	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTTCCAGG..........	26	1	3	0.33	1	0	1	0	0	0	0
...........................................................................................................................CGACGGCCTCAGTAGGTTCCAGT..........	23	1	3	0.33	1	0	1	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTTCCTT.......................................................................................................	26	2	3	0.33	1	0	1	0	0	0	0
......................................................................................................................GCCCGTCACGGCCTCAGTAGGTTCCAGT..........	28	1	3	0.33	1	1	0	0	0	0	0
.........................................................................................................................GGTGACGGCCTCAGTAGGTTCTAGT..........	25	2	3	0.33	1	0	1	0	0	0	0
............................................................................................................................GACGGCCTCATTAGGTTCCAGT..........	22	1	3	0.33	1	1	0	0	0	0	0
............................................................................................TCGACATGGACCGTCATACT............................................	20	3	3	0.33	1	0	0	0	0	0	1
....................................................................................................................TGGCCCGTGACGGCCTCAGTAGGTT...............	25	0	3	0.33	1	1	0	0	0	0	0
.............................................................................................................................ACGGCCTCAGTAGGTTCCAG...........	20	0	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................CCCGTGACGGCCTCAGTAGGTTC..............	23	0	3	0.33	1	0	1	0	0	0	0
...........................GGGCCGCACAGTTGTTATATTTCAGT.......................................................................................................	26	1	3	0.33	1	1	0	0	0	0	0
..............................CTGCACAGTTGTTATATTTCATT.......................................................................................................	23	1	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................CCGGTGACGGCCTCAGTAGGTTCCAGT..........	27	1	3	0.33	1	0	1	0	0	0	0
.............................GCTGCACAGTTGTTATATTT...........................................................................................................	20	0	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GGCCGGTGACGGCCTCAGTAGGTTCCATT..........	29	2	3	0.33	1	0	1	0	0	0	0
...........................................................................................................................TGACGGTCTCAGTAGGTTCCAGT..........	23	1	3	0.33	1	1	0	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTTCAGTA......................................................................................................	27	1	3	0.33	1	1	0	0	0	0	0
...........................GGGCTGCACAGTTGGTATATTTCAGT.......................................................................................................	26	1	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................CCCGTGACGTCCTCAGTAGGTTCCAGT..........	27	1	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCTCGGTAGGTTCCAGT..........	29	1	3	0.33	1	0	1	0	0	0	0
........................................................................................................................CCGTGACGGCCTCAGTAGGTTCCAGTC.........	27	1	3	0.33	1	1	0	0	0	0	0
......................................................................................................................GCCCGTGACGGCCTCAGTAGGTTC..............	24	0	3	0.33	1	1	0	0	0	0	0
..........................................................................................................................GTGACGGCCTCAGTAGGTTCCAGTCCAGC.....	29	3	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................GGCCCGTGACGACCTCAGTAGGTTCCATT..........	29	2	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................GGCCCGTGACGGCCACCGTAGGTTCCATT..........	29	3	3	0.33	1	0	1	0	0	0	0
...........................GGGCTGCACAGTTGTTATATTCCAGT.......................................................................................................	26	1	4	0.25	1	1	0	0	0	0	0
...........................CGGCTGCAGAGTTGTTATTT.............................................................................................................	20	3	17	0.06	1	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:26469234-26469389 -	dmo_130	AG--ACGTGGCCATCCACGTTCGATGTTGCCCGACGTGTCAACAATATAAAGTCA--------GTCAACGGCAGGCAGCGGGCAAGAAGAGGTT------GCTTGAAGAGGTGTACCTGGCCGTAT----------TATTGGACCGGGCACTGCCGGAGTCA-TCCAAGGTCACGCCCAACAC
droVir3	scaffold_13045:125082-125228 +		CG--ATGCCGCCAGATACGTGAAATGTTGCGAAGACTGCCAAAAATTCAAGAGTG--------AGCAACTCAAACCGGCTGGTCGCATGCTGACGAGGTAGGTGGCAGAGCCGATGGCGGTACTTTTCGCGGACTTCGTCGGACC----CCTTCCACGGTC----------------------
droGri2	scaffold_5063:1997-2081 +		AG--ACGTACGTGCATATGTCCAACAATGCGAAATATGTCAGCAGTATAAGCCAA--------GTCAAATGGCCGCGGCAGGGAAAGGATTCTCG----------------------------------------------------------------------------------------
droWil2	scf2_1100000004967:863256-863392 +		AG--TTGTCGCGCGTTACATTAGATGCTGCCTCGTCTGCTCGCAGTTTAAACCGG--------CGCAAATGAAACCAGCGGGCAAAATGCTCACCCGTCAAGTCGCGGAGTCGTTCGATACCGTGT-----GACTTTATCGGGCC----ATTGCCG---------------------------
dp5	Unknown_singleton_3704:1867-1970 -		AG--ATGTGAGGACATACGTGAGGAGGTGTGAAATCTGCCTACGCTACAAACCAA--------GTCAACTGCAGGCGGCCGGGAAAATGCTGACGCGAGTGCCAGAGGAGCCGT---------------------------------------------------------------------
droPer2	scaffold_641:956-1084 +		AG--ATATCGCCCGATATATCCAGCAGTGCACCAAGTGCCAGCAGTACAAGGTGA--------GTCAAACCAAACCAGGAGGGAAGATGATATCGTAGA----------GCCGA---------TGGATCGGGGCTTGGGCGG-GC----GTTGCTAGCGTTG-T-------------------
droAna3	scaffold_13054:3926-4067 -		GG--ACGTAAGGAACTTTGTCAGGAAATGCGAGACATACATGCGGTATAAACCGA--------GCCAGATGCAGGCCGCTGGGAAAATGCTGTGG---------------------GCAACGGTATGTGCGGACTTCGTGGGACC----GTTGCCGAGGTCCATGCATGGAAACACC------
droBip1	scf7180000396774:9419-9506 +		AGAGACATCCGGAAATATGTCAGGAGATGCGAAACTTGCATAAAATACAAACCAT--------GCCAGATGCAAGCAGCAGGACAAATGCGGTCGC---------------------------------------------------------------------------------------
droKik1	scf7180000300684:20545-20636 +		AG--ACGTTCGACGGTTCGTGCGACAATGTGTCCCCTGCCAGAAGTTCGGA-------------ACAACGACAGCAAGCCGGGAAAATGCTGACCAGACAGGTGAAC----------------------------------------------------------------------------
droFic1	scf7180000449803:17740-17887 -		GG--ACATCAGGGCCTACGTTCGTAGCTGTGAGAGCTGCATGAAGTACAAGCTGA--------ACCAGCTGCAGGCAGCAGGCAAGATGTTGACGCAGATTCCCGAGGAGCCGTGGGCGGCAGTGTGTGCCGATTTCGTCGGGCC----ACTGCCGCGGTCA---------------------
droEle1	scf7180000491176:5746-5858 +		GG--ACGTGG-TACGGCTGTCACTAGCTGTCTGACCTGCCAACAATACAAGGTTA--------GTCAGCGTAAACCAGCCGGCAAGATGCTCACTCGCCAAGTCGTA---------------------GCCGACTTCGTTGGACC--------------------------------------
droRho1	scf7180000776581:21246-21392 +		GG--ATGTCAAAAGGTATGTTCAAAACTGTCTAACCTGCA-AAGGTTCAAGGTCG--------ACCAACAGAAGCCGGCGGGACAGATGCTATCTCGTCGAATAGAAGAACCCTGTTCGACATGGTGTGCCGACTTTGTTGGACC----CTTGCCGAAGTCA---------------------
droBia1	scf7180000302405:47948-48111 +		CG--ATATGGCCAGGTATGTCCGCAAGTGTGACACTTGCCAACGGTTCAAAGTCA--------GCCAAACCAAGCCGGCGGGTAAAATGTTCACCAGACAGATTAACGAGCCGTTCGAGACTGTCTGCGCCTATTTTATTGGGCC----CCTTCCGCGATCC----AAGAGCTCGTCT-TCGT
droTak1	scf7180000415216:245-326 +		CG--ACGTGGGCACTTACGTTCGGAGGTGCCTTTCTTGCCAGAAATACAAAGCGT--------CGCAGCAGAAACAGGCAGGGAGGATGCTT-------------------------------------------------------------------------------------------
droEug1	scf7180000409520:12826-12906 -		AG--AGGTAGCTAAATACGTGCGACGGTGCCCGAGCTGCCAAAAATTCAAGGTAA--------GCCACGTAAAGCCGGCCGGGAAGATGTT--------------------------------------------------------------------------------------------
dm3	chr3LHet:1185111-1185192 +		AG--ACGTAAGAAAGGACGTGCGGAACTGCGAGGGCCGCATGAAGTACAAGCCCA--------GCCAGCTACAGGCGGCCGGGAAAATGTTG-------------------------------------------------------------------------------------------
droSim2	node_11282:2117-2193 +		AG--ACGTAAGAAAGTACGTGCGAAACTGCGAGAGCTGCATAAAGTACAAGCCCA--------GCCAGCTACAGGCGGCCGGGAAGA------------------------------------------------------------------------------------------------
droSec2	scaffold_2542:1136-1220 +		AG--ACGTAAGGAAGTACGTGCGAAACTGCGAGAGCTGCATGAAGTACAAGCTCAACGGGACAGTCAGCTACAGGCGGCCGGGAAGA------------------------------------------------------------------------------------------------
droYak3	v2_chr2h_random_003:1444-1591 -		AG--ACGTCAGGAAATACGTAAGGAATTGCGAGAGCTGCATGAAATACAAGCCCA--------ACCAACTGCAAGCAGCCGGGAAAATGCTGACACAGGTGCCGGAAGAACCGTGGGCCACCGTATGTGCGGACTTTGTGGGCCC----ATTGCCGAGGTCA---------------------
droEre2	scaffold_4809:38923-39013 -		GG--ACATACGGAAATACGTTCGAAGCTGCGAAAGCTGCACGAAGTATAAGTCGA--------ACCAACTACAGGCGGCCGCGAAAATGCTGACGGAGGTG----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AG--ACGTGGCCATCCACGTTCGATGTTGCCCGACGTGTCAACAATATAAAGTCA--------GTCAACGGCAGGCAGCGGGCAAGAAGAGGTT------GCTTGAAGAGGTGTACCTGGCCGTAT----------TATTGGACCGGGCACTGCCGGAGTCA-TCCAAGGTCACGCCCAACAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................GTT------GCTTGAAGAGGTGTACCTGG...............................................................	23	3	37.33	112	108	0	0	0	1	3
.............................................TATAAAGTCA--------GTCAACGGCAGGC...........................................................................................................	23	1	31.00	31	18	0	0	0	13	0
.............................................TATAAAGTCA--------GTCAACGGCAGG............................................................................................................	22	1	21.00	21	14	1	0	0	6	0
...........................................................................................GTT------GCTTGAAGAGGTGTACCTGGC..............................................................	24	3	20.00	60	44	1	1	1	5	8
.............................................TATAAAGTCA--------GTCAACGGCAGGCA..........................................................................................................	24	1	20.00	20	20	0	0	0	0	0
...........................................................................................GTT------GCTTGAAGAGGTGTACCTGGCC.............................................................	25	3	10.67	32	29	1	0	0	1	1
.............................................TATAAAGTCA--------GTCAACGGCAGGCAGC........................................................................................................	26	1	7.00	7	5	0	0	0	2	0
...........................................................................................GTT------GCTTGAAGAGGTGTACCTG................................................................	22	3	6.67	20	18	0	0	0	2	0
.............................................TATAAAGTCA--------GTCAACGGCAGGCAG.........................................................................................................	25	1	5.00	5	5	0	0	0	0	0
...........................................................................................GTT------GCTTGAAGAGGTGTACCT.................................................................	21	3	4.33	13	7	1	0	0	2	3
...........................................................................................GTT------GCTTGAAGAGGTGTACCTGGCCG............................................................	26	3	3.00	9	6	0	0	0	0	3
.............................................TATAAAGTCA--------GTCAACGGCA..............................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..............................................ATAAAGTCA--------GTCAACGGCAGGC...........................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.............................................TATAAAGTCA--------GTCAACGGCAGGCAT.........................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.............................................TATAAAGTCA--------GTCAACGGCAGGCAGCGG......................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.............................................TATAAAGTCA--------GTCAACGGCAGGCAGTT.......................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.................................................AAGTCA--------GTCAACGGCAGGCAGC........................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..............CCACGTTCGATGTTGCCCGACG...................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........................................................................................GTT------GCTTGAAGAGGTGTACCTGGCCGT...........................................................	27	3	1.00	3	3	0	0	0	0	0
..............................................ATAAAGTCA--------GTCAACGGCAGGCAGCGG......................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................TATAAAGTCA--------GTCAACGGCAG.............................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................GTT------GCTTGAAGAGGTGTACCTGGCCGTA..........................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................................................AAGAAGAGGTT------GCTTGAAGAG.........................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................CA--------GTCAACGGCAGGCAGCGGGCAT..................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................GTT------GCTTGAAGAGGTGTACC..................................................................	20	3	1.00	3	0	0	0	0	3	0
..............................................ATAAAGTCA--------GTCAACGGCAGGCA..........................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................TCA--------GTCAACGGCAGGCAG.........................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................T------GCTTGAAGAGGTGTACCTGGCCGTAT----------...............................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................TT------GCTTGAAGAGGTGTACCTG................................................................	21	3	0.67	2	2	0	0	0	0	0
....................................................................................................................................................................CCAAGGTCACGCCCAACAC	19	3	0.67	2	2	0	0	0	0	0
............................................................................................TT------GCTTGAAGAGGTGTACCTGG...............................................................	22	3	0.67	2	2	0	0	0	0	0
.......................................................................................................................................................TGCCGGAGTCA-TCCAAGGTCACG........	23	3	0.33	1	1	0	0	0	0	0
...........................................................................................GTT------GCTTGAAGAGGTGTACCTC................................................................	22	3	0.33	1	1	0	0	0	0	0
...........................................................................................GTT------GCTTGAAGAGGTGTACCTGGCCT............................................................	26	3	0.33	1	0	0	0	0	1	0
..............................................................................................................................................................GTCA-TCCAAGGTCACGCCCAA...	21	3	0.33	1	1	0	0	0	0	0
.............................................................................................T------GCTTGAAGAGGTGTACCTGG...............................................................	21	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................................................TCCAAGGTCACGCCCAACA.	19	3	0.33	1	1	0	0	0	0	0
............................................................................................TT------GCTTGAAGAGGTGTACCTGGC..............................................................	23	3	0.33	1	1	0	0	0	0	0
...........................................................................................GTT------GCTTGAAGAGGTGTACCTGGCTC............................................................	26	3	0.33	1	1	0	0	0	0	0
...........................................................................................GTT------GCTTGAAGAGGTGTACCC.................................................................	21	3	0.33	1	0	0	0	0	1	0
..............................................................................................................................................ACCGGGCACTGCCGGAGTCA-....................	20	5	0.20	1	1	0	0	0	0	0

droVir3

CG--ATGCCGCCAGATACGTGAAATGTTGCGAAGACTGCCAAAAATTCAAGAGTG--------AGCAACTCAAACCGGCTGGTCGCATGCTGACGAGGTAGGTGGCAGAGCCGATGGCGGTACTTTTCGCGGACTTCGTCGGACC----CCTTCCACGGTC----------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................TCAAGAGTG--------AGCAACTCAAACCGG.........................................................................................................	24	20	23.65	473	0	0	69	2	21	0	18	0	3	0	2	2	4	1	0	0	0	0	0	0	9	0	0	39	0	33	56	28	45	18	0	12	0	0	33	0	20	34	20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACT..................................................................................................................................................	24	20	16.45	329	2	0	0	4	20	13	0	14	0	0	10	0	2	1	0	0	0	0	0	0	12	0	0	13	0	19	59	25	0	55	6	24	9	8	0	13	0	0	13	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0
.............GATACGTGAAATGTTGCGAAGACTG.................................................................................................................................................	25	20	11.15	223	1	0	13	0	4	5	4	1	0	2	5	0	0	1	0	0	0	0	0	0	8	0	0	16	9	11	33	0	32	29	2	13	0	5	3	6	0	7	6	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCG..........................................................................................................	23	20	9.35	187	0	0	20	0	24	2	11	1	1	0	0	0	0	2	0	0	0	0	0	0	2	0	0	32	0	0	22	8	0	7	7	4	2	0	6	2	6	5	21	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGA....................................................................................................................................................	22	20	9.05	181	0	0	0	0	10	6	0	1	0	1	0	0	3	0	0	0	0	0	0	0	2	0	0	0	15	9	29	9	38	0	8	18	7	6	9	0	6	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGC........................................................................................................	25	20	8.80	176	0	0	60	9	3	0	2	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	11	16	0	14	0	4	0	7	4	0	10	0	29	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGC................................................................................................................................................	26	20	8.40	168	0	0	43	5	4	2	0	3	19	0	2	0	3	1	0	0	0	0	0	0	0	0	0	3	5	9	25	9	8	0	2	3	2	0	8	6	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.............GATACGTGAAATGTTGCGAAGAC...................................................................................................................................................	23	20	6.50	130	0	0	20	1	4	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	7	0	9	23	0	16	12	5	5	0	0	5	0	3	9	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................TCAAGAGTG--------AGCAACTCAAACC...........................................................................................................	22	20	5.85	117	0	0	8	1	6	1	10	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	16	7	19	8	20	6	0	0	0	0	5	0	2	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGCCA..............................................................................................................................................	28	20	5.70	114	2	0	0	0	7	4	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	23	0	11	6	2	0	5	0	13	5	9	5	6	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCGT............................................	22	2	3.50	7	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAG.....................................................................................................................................................	21	20	3.20	64	0	0	4	0	2	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	5	6	11	2	9	1	0	2	2	1	3	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGCT.......................................................................................................	26	20	3.10	62	0	0	14	2	5	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	3	4	0	2	4	1	1	0	0	0	1	5	3	0	2	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------AGC.....................................................................................................................	24	20	2.60	52	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	10	0	0	0	6	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCGTCGG.........................................	25	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGAAGACTGCCAAAAATTCAAGAGT.................................................................................................................................	25	20	2.50	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0	14	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGCC...............................................................................................................................................	27	20	2.35	47	0	0	6	0	7	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	13	3	1	5	3	0	0	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTT.................................................................................................................................................	25	20	1.60	32	0	0	0	0	3	3	4	0	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	0	1	0	1	3	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCGTCGGA........................................	26	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGAAGACTGCCAAAAATTCAAGA...................................................................................................................................	23	20	1.45	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	11	0	0	0	0	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................AGGTGGCAGAGCCGATGG..................................................................	18	20	1.40	28	0	0	6	0	1	0	0	4	0	2	12	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------AG......................................................................................................................	23	20	1.30	26	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	10	0	5	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGAAGACTGCCAAAAATTCAAGAG..................................................................................................................................	24	20	1.20	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGAAGACTGCCAAAAATTCAAGAGTG--------A.......................................................................................................................	27	20	1.20	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGCTG......................................................................................................	27	20	1.15	23	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	2	0	5	2	0	3	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAAC............................................................................................................	21	20	1.00	20	0	0	3	0	3	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	1	1	1	3	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCGTC...........................................	23	2	1.00	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGAAGACTGCCAAAAATTCAAGAGTG--------........................................................................................................................	26	20	0.95	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	10	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAA......................................................................................................................................................	20	20	0.85	17	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	3	1	0	0	1	2	0	1	1	0	0	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------AGCAAC..................................................................................................................	27	20	0.85	17	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	3	0	1	0	0	0	0	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGAAATGTTGCGAAGACTGCCA..............................................................................................................................................	27	20	0.80	16	0	0	4	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAA.............................................................................................................	20	20	0.70	14	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	0	0	2	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGCTGG.....................................................................................................	28	20	0.60	12	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	2	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGCCC..............................................................................................................................................	28	20	0.60	12	0	0	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGAAATGTTGCGAAGACTG.................................................................................................................................................	24	20	0.55	11	0	0	2	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGATACGTGAAATGTTGCGAAGA....................................................................................................................................................	23	20	0.55	11	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGAAATGTTGCGAAGACTGC................................................................................................................................................	25	20	0.55	11	0	0	6	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TACTTTTCGCGGACTTCGTCGGA........................................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCGTCGGAC.......................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTC..............................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TACTTTTCGCGGACTTCGTCGG.........................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCGTCGGACC----..................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCGTCG..........................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCG.............................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGAAATGTTGCGAAGACT..................................................................................................................................................	23	20	0.45	9	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CAAGAGTG--------AGCAACTCAAACCGGC........................................................................................................	24	20	0.45	9	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TTCAAGAGTG--------AGCAACTCAAACCGGC........................................................................................................	26	20	0.45	9	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------AGCA....................................................................................................................	25	20	0.45	9	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------AGCAA...................................................................................................................	26	20	0.40	8	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGA................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGAT...................................................................................................................................................	23	20	0.35	7	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCGTCGGAT.......................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCGTCGT.........................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGGTACTTTTCGCGGACTTCGTCTTT........................................	26	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTTA................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AAGAGTG--------AGCAACTCAAACCGGC........................................................................................................	23	20	0.30	6	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CAAGAGTG--------AGCAACTCAAACCGG.........................................................................................................	23	20	0.30	6	0	0	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCG........................................................................................................................................................	18	20	0.30	6	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AAGAGTG--------AGCAACTCAAACCGG.........................................................................................................	22	20	0.25	5	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGATACGTGAAATGTTGCGAAGACT..................................................................................................................................................	25	20	0.25	5	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CAAGAGTG--------AGCAACTCAAACCGGCT.......................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCT..........................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TGCCGCCAGATACGTGAAATGTTG..........................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGATACGTGAAATGTTGCGAT......................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTGCGAAGACTGCCAAAAAT.........................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGAA...................................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------A.......................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TCAAACCGGCTGGTCGCATGC.............................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGAAGACTGCCAAAAATTCAAGAT..................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACA..................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AAGACTGCCAAAAATTCAAGAGTG--------AGC.....................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCA..........................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------AGCAACT.................................................................................................................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCA...............................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AAGAGTG--------AGCAACTCAAACC...........................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTTG................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CTGCCAAAAATTCAAGAGTG--------AGC.....................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CAAGAGTG--------AGCAACTCAAACCGGCTG......................................................................................................	26	20	0.15	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................TG--------AGCAACTCAAACCGGCTGGTCGCA................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CTGCCAAAAATTCAAGAGTG--------AG......................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGATACGTGAAATGTTGCGAAGACTGC................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------........................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGAAGACTGCCAAAAATTCAAG....................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TTCAAGAGTG--------AGCAACTCAAACCGGCT.......................................................................................................	27	20	0.10	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CTTCGTCGGACC----CCTTCCACG.........................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGATACGTGAAATGTTGCGAAGACTG.................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AGACTGCCAAAAATTCAAGAGT.................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGAT...............................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGT.................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CCGCCAGATACGTGAAATGTTGC.........................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AAGAGTG--------AGCAACTCAAACCGGCTG......................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGCCT..............................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGAAATGTTGCGAAGACTGCCAAAAA..........................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TGCCAAAAATTCAAGAGTG--------AGCAAC..................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................AAATTCAAGAGTG--------AGCAACTCAAACCGG.........................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................G--------AGCAACTCAAACCGGCTGGTCGCAT...............................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CAAGAGTG--------AGCAACTCAAACCGGCTGG.....................................................................................................	27	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TG--------AGCAACTCAAACCGGCTGGTCGC.................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AAGACTGCCAAAAATT........................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
..............ATACGTGAAATGTTGCGAAGACTGCCAA.............................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGAAATGTTGCGAAGACTT.................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTC.................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CAAGAGTG--------AGCAACTCAAACCG..........................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGCTTT.....................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGA.......................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGAAATGTTGCGAAGACTGCC...............................................................................................................................................	26	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TGCCAAAAATTCAAGAGTG--------AGCAACTCA...............................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AAGAGTG--------AGCAACTCAAACCGGCT.......................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGAAA..................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGTGAAATGTTGCGAAGACTGC................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGAAATGTTGCGAAGA....................................................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAT.....................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AAGAGTG--------AGCAACTCAAACCGGCTGG.....................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGCTGGT....................................................................................................	29	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGAA...............................................................................................................................................	27	20	0.10	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGCA...............................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TGCCAAAAATTCAAGAGTG--------AGCAACTC................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ATGTTGCGAAGACTGCCAAAAAT.........................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACA...........................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGCTTTA....................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGAAATGTTGCGAAGACTG.................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGCTGA.....................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCC..........................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ATGTTGCGAAGACTGCCAAAAATTCAA.....................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AAGACTGCCAAAAATTCAAGAGT.................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CCGCCAGATACGTGAAATGT............................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------AGT.....................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACCT.................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACGTGAAATGTTGCGAAGACTGCC...............................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACC..................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCGAAGACTGCCAAAAAT.........................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGCCAGATACGTGAAATGTTGCGAA......................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACATT.........................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TG--------AGCAACTCAAACCGGCTGGTCGCAT...............................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAATT....................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACGTGAAATGTTGCGAAGACTGC................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGCTTA.....................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------AT......................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACGTGAAATGTTGCGAAG.....................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CAAGAGTG--------AGCAACTCAAACCGGCTT......................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGTGAAATGTTGCGAAGACTGCCA..............................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------AGCAG...................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ATGTTGCGAAGACTGCCAAAA...........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAA..............................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGAAATGTTGCGAAGACTGC................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGCCAGATACGTGAAATGTTGCGAAG.....................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAG..................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGAG.......................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CAACTCAAACCGGCTGGTCGCATGC.............................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CAAAAATTCAAGAGTG--------AGCAACT.................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AACCGGCTGGTCGCATGCTGACGA.......................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGA........................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGCT...............................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACAT.................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ATGTTGCGAAGACTGCCAAAAA..........................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AAGAGTG--------AGCAACTCAAACCG..........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGATC..................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CCAGATACGTGAAATGTTGCGAAT.....................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CCGCCAGATACGTGAAATGTTGCGA.......................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CCAGATACGTGAAATGTTGCGAATTT...................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGAAATGTTGCGAAGAT...................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TCAAACCGGCTGGTCGCATGCTGAC.........................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CAGATACGTGAAATGTTG..........................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TG--------AGCAACTCAAACCGGCTGGTCGCATG..............................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AGTG--------AGCAACTCAAACCGGCTGA.....................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTGAAATGTTGCGAAGACT..................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGTG--------AGCAACTCAAACCGGCTGG.....................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CCAGATACGTGAAATGTTGCGAA......................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGAAGACTGCCAAAAATTCAAGAGTG--------AG......................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................G--------AGCAACTCAAACCGGCTGGTCGCATG..............................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................G--------AGCAACTCAAACCGGCTGGTCGC.................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TACGTGAAATGTTGCGAAGA....................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATACGTGAAATGTTGCGAAGACTGA................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TCAAACCGGCTGGTCGCATG..............................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGATACGTGAAATGTTGCGAAGACTT.................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................CTCAAACCGGCTGGTCGCATG..............................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGC.........................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................ATTCAAGAGTG--------AGCAACTCAAACCGG.........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGATACGTGAAATGTTGCGAAGAC...................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TACGTGAAATGTTGCGAAGACTGCC...............................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................AGAGTG--------AGCAACTCAAACCGGCTGGTC...................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCAAGAGTG--------AGCAACTCAAACCGGCTAT.....................................................................................................	28	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGTTGCGAAGACTGCCAAAAAT.........................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................CGTCGGACC----CCTTCCACGGT.......................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGACTGCAT..............................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TTCGTCGGACC----CCTTCCACGG........................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATACGTGAAATGTTGCGAAGC....................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ACCGGCTGGTCGCATGCTGACGAGG.....................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TACGTGAAATGTTGCGAAGACTGCCAAAAAT.........................................................................................................................................	31	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ACTGCCAAAAATTCAAGAGTG--------AGAT....................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ATGTTGCGAAGACTGCCAA.............................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CTGCCAAAAATTCAAGAGTG--------AGCAACTC................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GCCGCCAGATACGTGAAATGTTGCG........................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AGAGTG--------AGCAACTCAAACCGG.........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AAGACTGCCAAAAATTCAAGAGTG--------AGA.....................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CTGCCAAAAATTCAAGAGTG--------A.......................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AG--ACGTACGTGCATATGTCCAACAATGCGAAATATGTCAGCAGTATAAGCCAA--------GTCAAATGGCCGCGGCAGGGAAAGGATTCTCG----------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AG--TTGTCGCGCGTTACATTAGATGCTGCCTCGTCTGCTCGCAGTTTAAACCGG--------CGCAAATGAAACCAGCGGGCAAAATGCTCACCCGTCAAGTCGCGGAGTCGTTCGATACCGTGT-----GACTTTATCGGGCC----ATTGCCG---------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................TCAAGTCGCGGAGTCGTTCGATACCG............................................................	26	7	0.29	2	0	1	0	1	0
...........................................................................................CACCCGTCAAGTCGCGGAGTCGTTCGA.................................................................	27	4	0.25	1	0	0	0	1	0
.....................................................................TGAAACCAGCGGGCAAAATGCTCACCCG......................................................................................	28	18	0.06	1	0	1	0	0	0
.............................................TTTAAACCGG--------CGCAAATGAAACCAGCG.......................................................................................................	27	18	0.06	1	0	0	0	1	0
.................................................AACCGG--------CGCAAATGAAACCAGC........................................................................................................	22	19	0.05	1	0	0	0	1	0
...................................................................AATGAAACCAGCGGGCAAAATG..............................................................................................	22	20	0.05	1	0	0	0	1	0
..........................................................................................TCACCCGTCAAGTCGCGGAGT........................................................................	21	20	0.05	1	0	1	0	0	0
.....................................................................TGAAACCAGCGGGCAAAATG..............................................................................................	20	20	0.05	1	0	0	0	1	0
...................................................................AATGAAACCAGCGGGCAAAATGC.............................................................................................	23	20	0.05	1	0	1	0	0	0
....................................................................ATGAAACCAGCGGGCAAAATG..............................................................................................	21	20	0.05	1	0	1	0	0	0
...............................................................CGCAAATGAAACCAGCGGGCAAAATGC.............................................................................................	27	20	0.05	1	0	1	0	0	0
.....................................................................................AATGCTCACCCGTCAAGTCGCGGAG.........................................................................	25	20	0.05	1	0	0	0	1	0

dp5

AG--ATGTGAGGACATACGTGAGGAGGTGTGAAATCTGCCTACGCTACAAACCAA--------GTCAACTGCAGGCGGCCGGGAAAATGCTGACGCGAGTGCCAGAGGAGCCGT---------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........GAGGACATACGTGAGGAGGTGT.........................................................................................................................................................	22	7	13.14	92	0	74	0	0	14	0	2	2	0	0
................................................AAACCAA--------GTCAACTGCAGGCGG.........................................................................................................	22	11	11.36	125	0	124	1	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAGGTG..........................................................................................................................................................	21	8	8.50	68	0	57	1	0	3	0	0	7	0	0
........GAGGACATACGTGAGGAGGTGTGA.......................................................................................................................................................	24	7	7.71	54	0	50	3	0	0	0	1	0	0	0
........GAGGACATACGTGAGGAGGTGTG........................................................................................................................................................	23	7	7.43	52	0	51	0	0	0	0	1	0	0	0
........GAGGACATACGTGAGGAGGT...........................................................................................................................................................	20	8	7.25	58	0	26	1	0	1	0	1	29	0	0
................................................AAACCAA--------GTCAACTGCAGGCGGC........................................................................................................	23	11	5.55	61	1	49	1	1	1	0	0	8	0	0
........................................TACGCTACAAACCAA--------GTCAACTG................................................................................................................	23	12	3.92	47	0	47	0	0	0	0	0	0	0	0
................................................AAACCAA--------GTCAACTGCAGGCG..........................................................................................................	21	11	3.73	41	0	41	0	0	0	0	0	0	0	0
............................................CTACAAACCAA--------GTCAACTGCAGG............................................................................................................	23	12	3.17	38	0	33	2	0	1	0	0	2	0	0
........GAGGACATACGTGAGGAGG............................................................................................................................................................	19	8	3.00	24	0	18	0	0	0	0	0	6	0	0
................................................AAACCAA--------GTCAACTGCAGGC...........................................................................................................	20	11	2.00	22	0	21	1	0	0	0	0	0	0	0
........................................TACGCTACAAACCAA--------GTCAACTGC...............................................................................................................	24	12	2.00	24	0	21	2	0	1	0	0	0	0	0
........GAGGACATACGTGAGGAG.............................................................................................................................................................	18	8	1.88	15	0	14	0	0	0	0	0	1	0	0
.........AGGACATACGTGAGGAGGTGT.........................................................................................................................................................	21	7	1.71	12	0	12	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAGGTGTGAA......................................................................................................................................................	25	7	1.57	11	0	11	0	0	0	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGCGG.........................................................................................................	21	11	1.55	17	0	16	0	0	1	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGCGGC........................................................................................................	22	11	1.45	16	0	12	1	0	0	0	0	3	0	0
........................................TACGCTACAAACCAA--------GTCAACT.................................................................................................................	22	12	1.33	16	0	16	0	0	0	0	0	0	0	0
........................................TACGCTACAAACCAA--------GTCAACTGCAG.............................................................................................................	26	12	1.17	14	0	12	0	0	0	0	0	2	0	0
........................................TACGCTACAAACCAA--------GTCAACTGCAGG............................................................................................................	27	12	1.08	13	0	13	0	0	0	0	0	0	0	0
................................................AAACCAA--------GTCAACTGCAGGCGGCC.......................................................................................................	24	11	1.00	11	0	11	0	0	0	0	0	0	0	0
............................................CTACAAACCAA--------GTCAACTGCAGGC...........................................................................................................	24	11	0.91	10	0	9	0	0	1	0	0	0	0	0
..................................................ACCAA--------GTCAACTGCAGGCGG.........................................................................................................	20	11	0.91	10	0	9	0	0	0	0	1	0	0	0
........GAGGACATACGTGAGGAGGTGTGAAA.....................................................................................................................................................	26	7	0.86	6	0	6	0	0	0	0	0	0	0	0
.........AGGACATACGTGAGGAGGTGTG........................................................................................................................................................	22	7	0.86	6	0	6	0	0	0	0	0	0	0	0
................................................AAACCAA--------GTCAACTGCAGG............................................................................................................	19	12	0.83	10	0	10	0	0	0	0	0	0	0	0
.....................................................AA--------GTCAACTGCAGGCGGCCGGG....................................................................................................	22	8	0.75	6	0	6	0	0	0	0	0	0	0	0
................................................AAACCAA--------GTCAACTGCAGGCGGCCG......................................................................................................	25	11	0.73	8	0	4	0	0	0	0	0	4	0	0
.....................................................AA--------GTCAACTGCAGGCGGCCGG.....................................................................................................	21	11	0.73	8	0	8	0	0	0	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGCG..........................................................................................................	20	11	0.73	8	0	7	1	0	0	0	0	0	0	0
..................................................ACCAA--------GTCAACTGCAGGCGGC........................................................................................................	21	11	0.64	7	0	6	1	0	0	0	0	0	0	0
..................................................ACCAA--------GTCAACTGCAGGCGGCCG......................................................................................................	23	11	0.64	7	0	7	0	0	0	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGCGGCC.......................................................................................................	23	11	0.64	7	0	7	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAGGTGA.........................................................................................................................................................	22	8	0.50	4	0	2	0	0	2	0	0	0	0	0
........GAGGACATACGTGAGGAGGTGTGAAAT....................................................................................................................................................	27	7	0.43	3	0	3	0	0	0	0	0	0	0	0
.........AGGACATACGTGAGGAGGTGTGA.......................................................................................................................................................	23	7	0.43	3	0	3	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAGA............................................................................................................................................................	19	8	0.38	3	0	3	0	0	0	0	0	0	0	0
.........AGGACATACGTGAGGAGGT...........................................................................................................................................................	19	8	0.38	3	0	3	0	0	0	0	0	0	0	0
.........AGGACATACGTGAGGAGG............................................................................................................................................................	18	8	0.38	3	0	3	0	0	0	0	0	0	0	0
.............................................TACAAACCAA--------GTCAACTGCAGGCGG.........................................................................................................	25	11	0.36	4	0	3	0	0	0	0	0	1	0	0
.............................................TACAAACCAA--------GTCAACTGCAGGC...........................................................................................................	23	11	0.36	4	0	4	0	0	0	0	0	0	0	0
............................................CTACAAACCAA--------GTCAACTGCAGGCGG.........................................................................................................	26	11	0.36	4	0	2	0	0	0	0	0	2	0	0
........................................TACGCTACAAACCAA--------GTCAACTGCA..............................................................................................................	25	12	0.33	4	0	4	0	0	0	0	0	0	0	0
............................................CTACAAACCAA--------GTCAACTGCAG.............................................................................................................	22	12	0.33	4	0	4	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAGGTGTGT.......................................................................................................................................................	24	7	0.29	2	0	2	0	0	0	0	0	0	0	0
.......TGAGGACATACGTGAGGAGGTGT.........................................................................................................................................................	23	7	0.29	2	0	2	0	0	0	0	0	0	0	0
.........AGGACATACGTGAGGAGGTGTGAA......................................................................................................................................................	24	7	0.29	2	0	2	0	0	0	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGCGGCCG......................................................................................................	24	11	0.27	3	0	3	0	0	0	0	0	0	0	0
................................................AAACCAA--------GTCAACTGCAGGCGA.........................................................................................................	22	11	0.27	3	0	3	0	0	0	0	0	0	0	0
..................................................ACCAA--------GTCAACTGCAGGCGGCC.......................................................................................................	22	11	0.27	3	0	3	0	0	0	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGC...........................................................................................................	19	11	0.27	3	0	3	0	0	0	0	0	0	0	0
.....................................................AA--------GTCAACTGCAGGCGGCCG......................................................................................................	20	11	0.27	3	0	1	0	0	2	0	0	0	0	0
.....................................................AA--------GTCAACTGCAGGCGGCCGGGAAA.................................................................................................	25	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.........................................ACGCTACAAACCAA--------GTCAACTG................................................................................................................	22	12	0.25	3	0	3	0	0	0	0	0	0	0	0
.......TGAGGACATACGTGAGGAGG............................................................................................................................................................	20	8	0.25	2	0	1	0	0	0	0	0	1	0	0
.................................................AACCAA--------GTCAACTGCAGGCGGCCGGG....................................................................................................	26	8	0.25	2	0	0	0	0	0	0	0	2	0	0
.............................................TACAAACCAA--------GTCAACTGCAGG............................................................................................................	22	12	0.25	3	0	2	1	0	0	0	0	0	0	0
..................................................ACCAA--------GTCAACTGCAGGCG..........................................................................................................	19	11	0.18	2	0	2	0	0	0	0	0	0	0	0
..................................................ACCAA--------GTCAACTGCAGGC...........................................................................................................	18	11	0.18	2	0	2	0	0	0	0	0	0	0	0
..................................................ACCAA--------GTCAACTGCAGGCGA.........................................................................................................	20	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.....................................................AA--------GTCAACTGCAGGCGGC........................................................................................................	18	11	0.18	2	0	2	0	0	0	0	0	0	0	0
............................................CTACAAACCAA--------GTCAACTGCAGGCG..........................................................................................................	25	11	0.18	2	0	2	0	0	0	0	0	0	0	0
...............................................CAAACCAA--------GTCAACTGCAGGCGG.........................................................................................................	23	11	0.18	2	0	2	0	0	0	0	0	0	0	0
................................................AAACCAA--------GTCAACTGCAGGCGT.........................................................................................................	22	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGCGGCCGG.....................................................................................................	25	11	0.18	2	0	2	0	0	0	0	0	0	0	0
..................................................ACCAA--------GTCAACTGCAGGCGGCCGG.....................................................................................................	24	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.........................................ACGCTACAAACCAA--------GTCAACTGCAGG............................................................................................................	26	12	0.17	2	0	2	0	0	0	0	0	0	0	0
.........AGGACATACGTGAGGAGGTGTGAAAT....................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAGGTGTGAAAA....................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAGGTGTGAAATC...................................................................................................................................................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................TCTGCCTACGCTACAAACCAA--------GTCAACA.................................................................................................................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.........AGGACATACGTGAGGAGGTGTGAAA.....................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
....................................TGCCTACGCTACAAACCAA--------GTCAACT.................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.........................GGTGTGAAATCTGCCTACG...........................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGG...............................................................................................................................................................	16	8	0.13	1	0	0	0	0	0	0	0	1	0	0
.........AGGACATACGTGAGGAGGTG..........................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................AA--------GTCAACTGCAGGCGGCCGGGA...................................................................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAGGTGTA........................................................................................................................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..................................................ACCAA--------GTCAACTGCAGGCGGCCGGG....................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAC.............................................................................................................................................................	18	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAGGAC..........................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAGGTA..........................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGCAGGCGGCCGGGAAAATGCTG...........................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...................................................................ACTGCAGGCGGCCGGGAA..................................................................................................	18	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGCGGCCGT.....................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
....................................................CAA--------GTCAACTGCAGGCGGCCG......................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..................................................ACCAA--------GTCAACTGCAGGCGGCA.......................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...................................................CCAA--------GTCAACTGCAGGCGGCCG......................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
........................................TACGCTACAAACCAA--------GTCAACTGCAGGCG..........................................................................................................	29	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..............................................ACAAACCAA--------GTCAACTGCAGGC...........................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGCGA.........................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGCGGCCCA.....................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
....................................................CAA--------GTCAACTGCAGGCGG.........................................................................................................	18	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.................................................AACCAA--------GTCAACTGCAGGCGT.........................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...................................................CCAA--------GTCAACTGCAGGCGGCC.......................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
........................................TACGCTACAAACCAA--------GTCAACTGCAGGC...........................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
............................................CTACAAACCAA--------GTCAACTGCAGGCGC.........................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.....................................................AA--------GTCAACTGCAGGCGGCCGC.....................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...................................................CCAA--------GTCAACTGCAGGCG..........................................................................................................	18	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.....................................................AA--------GTCAACTGCAGGCGGCCGT.....................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
............................................CTACAAACCAA--------GTCAACTGCAGGCGGC........................................................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.........................................ACGCTACAAACCAA--------GTCAACTGC...............................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................A--------GTCAACTGCAGGCGGCCG......................................................................................................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................CAAACCAA--------GTCAACTGCAGG............................................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................A--------GTCAACTGCAGGCGGCCGG.....................................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.........................................ACGCTACAAACCAA--------GTCAACT.................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................A--------GTCAACTGCAGGCGGCCGC.....................................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
........................................TACGCTACAAACCAA--------GTCAA...................................................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
AG--ATGTGAGGACATACGTGAG................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.G--ATGTGAGGACATACGTGAG................................................................................................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAA.............................................................................................................................................................	18	12	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................................CTGCAGGCGGCCGGGAAAAAAA.............................................................................................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0
........GAGGACATACGTGAGGAAA............................................................................................................................................................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................CCAA--------GTCAACTGCAGGTA..........................................................................................................	18	17	0.06	1	0	1	0	0	0	0	0	0	0	0

droPer2

AG--ATATCGCCCGATATATCCAGCAGTGCACCAAGTGCCAGCAGTACAAGGTGA--------GTCAAACCAAACCAGGAGGGAAGATGATATCGTAGA----------GCCGA---------TGGATCGGGGCTTGGGCGG-GC----GTTGCTAGCGTTG-T-------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................TCAAACCAAACCAGGAGGGAAGATGA.............................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................................TCAAACCAAACCAGGAGGGAAGA................................................................................................	23	20	0.35	7	0	3	0	0	0	4
................................................................TCAAACCAAACCAGGAGGGAAGATG..............................................................................................	25	20	0.30	6	0	6	0	0	0	0
................................................................................................................GA---------TGGATCGGGGCTTGGGCC..........................................	20	20	0.05	1	0	0	0	0	0	1
....................................TGCCAGCAGTACAAGGTGA--------........................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................GCTTGGGCGG-GC----GTTGCTAGC.........................	21	20	0.05	1	0	0	0	0	0	1

droAna3

GG--ACGTAAGGAACTTTGTCAGGAAATGCGAGACATACATGCGGTATAAACCGA--------GCCAGATGCAGGCCGCTGGGAAAATGCTGTGG---------------------GCAACGGTATGTGCGGACTTCGTGGGACC----GTTGCCGAGGTCCATGCATGGAAACACC------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................TAAACCGA--------GCCAGATGCAGGCCGCT.......................................................................................................	25	2	0.50	1	1	0	0	0	0	0
..................................................................................................................................GGACTTCGTGGGACC----GTTGCCGAGG........................	25	20	0.30	6	6	0	0	0	0	0
.....................................................................................................................................CTTCGTGGGACC----GTTGCCGAGG........................	22	20	0.20	4	4	0	0	0	0	0
.............................................TATAAACCGA--------GCCAGATGCAGGCCGC........................................................................................................	26	20	0.10	2	0	2	0	0	0	0
.................................................................................................................................CGGACTTCGTGGGACC----GTTGCCGAGG........................	26	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................ACGGTATGTGCGGACTTCGTGGGACC----..................................	26	20	0.10	2	2	0	0	0	0	0
..................................................................................................................................GGACTTCGTGGGACC----GTTGCCGAG.........................	24	20	0.10	2	2	0	0	0	0	0
.................................................................................................................................CGGACTTCGTGGGACC----GTTGCCGA..........................	24	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................TGCGGACTTCGTGGGACC----GTTGCCG...........................	25	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................TATGTGCGGACTTCGTGGGACC----G.................................	23	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................ACTTCGTGGGACC----GTTGCCGAGGTA......................	25	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................ACTTCGTGGGACC----GTTGCCGA..........................	21	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................TGCGGACTTCGTGGGACC----GTTGCC............................	24	20	0.05	1	0	1	0	0	0	0

droBip1

AGAGACATCCGGAAATATGTCAGGAGATGCGAAACTTGCATAAAATACAAACCAT--------GCCAGATGCAAGCAGCAGGACAAATGCGGTCGC---------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AG--ACGTTCGACGGTTCGTGCGACAATGTGTCCCCTGCCAGAAGTTCGGA-------------ACAACGACAGCAAGCCGGGAAAATGCTGACCAGACAGGTGAAC----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GG--ACATCAGGGCCTACGTTCGTAGCTGTGAGAGCTGCATGAAGTACAAGCTGA--------ACCAGCTGCAGGCAGCAGGCAAGATGTTGACGCAGATTCCCGAGGAGCCGTGGGCGGCAGTGTGTGCCGATTTCGTCGGGCC----ACTGCCGCGGTCA---------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GG--ACGTGG-TACGGCTGTCACTAGCTGTCTGACCTGCCAACAATACAAGGTTA--------GTCAGCGTAAACCAGCCGGCAAGATGCTCACTCGCCAAGTCGTA---------------------GCCGACTTCGTTGGACC--------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GG--ATGTCAAAAGGTATGTTCAAAACTGTCTAACCTGCA-AAGGTTCAAGGTCG--------ACCAACAGAAGCCGGCGGGACAGATGCTATCTCGTCGAATAGAAGAACCCTGTTCGACATGGTGTGCCGACTTTGTTGGACC----CTTGCCGAAGTCA---------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CG--ATATGGCCAGGTATGTCCGCAAGTGTGACACTTGCCAACGGTTCAAAGTCA--------GCCAAACCAAGCCGGCGGGTAAAATGTTCACCAGACAGATTAACGAGCCGTTCGAGACTGTCTGCGCCTATTTTATTGGGCC----CCTTCCGCGATCC----AAGAGCTCGTCT-TCGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CG--ACGTGGGCACTTACGTTCGGAGGTGCCTTTCTTGCCAGAAATACAAAGCGT--------CGCAGCAGAAACAGGCAGGGAGGATGCTT-------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AG--AGGTAGCTAAATACGTGCGACGGTGCCCGAGCTGCCAAAAATTCAAGGTAA--------GCCACGTAAAGCCGGCCGGGAAGATGTT--------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AG--ACGTAAGAAAGGACGTGCGGAACTGCGAGGGCCGCATGAAGTACAAGCCCA--------GCCAGCTACAGGCGGCCGGGAAAATGTTG-------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......TAAGAAAGGACGTGCGGAACTGC.........................................................................................................................................................	23	1	45.00	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	7	0	3	5	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	2	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......TAAGAAAGGACGTGCGGAACTGCGA.......................................................................................................................................................	25	1	37.00	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	3	0	0	4	10	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......TAAGAAAGGACGTGCGGAACTGCGAG......................................................................................................................................................	26	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	3	0	5	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................CA--------GCCAGCTACAGGCGGC........................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TACAAGCCCA--------GCCAGCTACC..............................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AG--ACGTAAGAAAGTACGTGCGAAACTGCGAGAGCTGCATAAAGTACAAGCCCA--------GCCAGCTACAGGCGGCCGGGAAGA------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........AAAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	25	2	973.00	1946	0	1	111	114	1	0	2	142	2	29	1515	19	10	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAG....................................................................................................................................................	24	2	209.50	419	0	0	0	7	0	0	0	1	0	1	377	4	27	2	0	0	0
...........AAAGTACGTGCGAAACTGCGAGA.....................................................................................................................................................	23	2	151.50	303	0	0	0	7	1	0	0	2	1	10	249	2	30	1	0	0	0
......GTAAGAAAGTACGTGCGAAACTGCGA.......................................................................................................................................................	26	2	67.00	134	0	0	1	3	0	0	0	36	4	52	18	0	20	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATAAAG..........................................................................................................................................	26	1	51.00	51	0	0	0	0	0	0	32	1	15	1	1	0	1	0	0	0	0
......GTAAGAAAGTACGTGCGAAACTGCGAG......................................................................................................................................................	27	2	47.50	95	0	0	0	5	0	0	0	25	0	28	11	0	26	0	0	0	0
.............................................TACAAGCCCA--------GCCAGCTACAGGCGGC........................................................................................................	26	2	34.50	69	0	0	0	1	0	0	17	46	2	3	0	0	0	0	0	0	0
...........AAAGTACGTGCGAAACT...........................................................................................................................................................	17	2	34.00	68	0	0	0	0	0	0	0	0	0	0	68	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCT..................................................................................................................................................	26	2	34.00	68	0	0	14	1	0	0	0	9	0	3	41	0	0	0	0	0	0
...............TACGTGCGAAACTGCGAGAGCTGCA...............................................................................................................................................	25	4	33.25	133	0	0	15	1	0	0	1	9	1	6	100	0	0	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATAAA...........................................................................................................................................	25	1	23.00	23	0	0	0	0	0	0	13	0	9	1	0	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAG......................................................................................................................................................	22	2	22.50	45	0	0	0	0	1	0	0	0	0	0	29	0	15	0	0	0	0
...........AAAGTACGTGCGAAACTGCGA.......................................................................................................................................................	21	2	21.00	42	0	0	0	1	0	0	0	0	0	1	35	0	4	1	0	0	0
......GTAAGAAAGTACGTGCGAAACTGCG........................................................................................................................................................	25	2	20.50	41	0	0	0	2	0	0	0	3	0	12	19	0	5	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	27	2	20.50	41	0	0	0	2	0	0	0	8	0	4	26	0	1	0	0	0	0
......GTAAGAAAGTACGTGCGAAACTGC.........................................................................................................................................................	24	2	20.50	41	0	0	0	0	0	0	0	1	0	1	26	0	13	0	0	0	0
......GTAAGAAAGTACGTGCGAAACTG..........................................................................................................................................................	23	2	20.00	40	0	0	0	0	0	0	0	1	0	4	7	0	25	3	0	0	0
.............................................TACAAGCCCA--------GCCAGCTACAGGCGGGA.......................................................................................................	27	2	16.50	33	0	0	0	0	0	0	28	0	4	1	0	0	0	0	0	0	0
....................................TGCATAAAGTACAAGCCCA--------GCCAGCTAC...............................................................................................................	28	1	14.00	14	0	0	0	3	0	0	0	1	0	1	3	0	5	1	0	0	0
......GTAAGAAAGTACGTGCGAAACTGCGAGA.....................................................................................................................................................	28	2	12.50	25	0	0	0	1	0	0	0	16	1	7	0	0	0	0	0	0	0
.......................AAACTGCGAGAGCTGCATAAAGTACA......................................................................................................................................	26	1	12.00	12	0	0	0	1	0	0	0	0	0	0	0	0	11	0	0	0	0
................ACGTGCGAAACTGCGAGAGC...................................................................................................................................................	20	4	10.75	43	0	0	0	0	0	0	0	0	0	0	43	0	0	0	0	0	0
...............TACGTGCGAAACTGCGAGAGCTGCATA.............................................................................................................................................	27	1	10.00	10	0	0	1	0	0	0	0	1	0	4	1	0	3	0	0	0	0
....................GCGAAACTGCGAGAGC...................................................................................................................................................	16	10	9.50	95	0	0	0	0	0	0	0	0	0	0	95	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGC.........................................................................................................................................................	19	2	9.00	18	0	0	0	0	5	0	0	0	0	0	13	0	0	0	0	0	0
...............TACGTGCGAAACTGCGAGAGC...................................................................................................................................................	21	4	8.50	34	0	0	0	0	0	0	0	0	0	1	33	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCG........................................................................................................................................................	20	2	8.50	17	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0
.............AGTACGTGCGAAACTGCGAGAGCTGCA...............................................................................................................................................	27	3	8.33	25	0	0	2	0	0	0	1	2	1	1	18	0	0	0	0	0	0
..............GTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	22	4	8.25	33	0	0	0	0	0	0	0	0	0	0	32	1	0	0	0	0	0
........................AACTGCGAGAGCTGCATAAAGTACA......................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0
..............GTACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	24	4	7.50	30	0	0	0	1	0	0	0	4	0	0	24	1	0	0	0	0	0
............AAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	24	3	7.33	22	0	0	0	10	0	0	0	1	0	1	10	0	0	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATAAAGTA........................................................................................................................................	28	1	7.00	7	0	0	0	0	0	0	6	0	1	0	0	0	0	0	0	0	0
......GTAAGAAAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	30	2	6.50	13	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGT...................................................................................................................................................	25	2	6.00	12	0	0	0	0	0	0	0	0	0	0	10	0	2	0	0	0	0
....................................TGCATAAAGTACAAGCCCA--------GCCAGC..................................................................................................................	25	1	6.00	6	0	0	0	1	0	0	0	1	0	0	0	0	3	1	0	0	0
..................GTGCGAAACTGCGAGAGC...................................................................................................................................................	18	6	6.00	36	0	0	0	0	0	0	0	0	0	0	36	0	0	0	0	0	0
....................................TGCATAAAGTACAAGCCCA--------GCCAGCTACA..............................................................................................................	29	1	6.00	6	0	0	0	0	0	0	1	0	1	1	0	0	3	0	0	0	0
..............GTACGTGCGAAACTGCGAGAGCTGC................................................................................................................................................	25	4	5.25	21	0	0	1	1	0	0	0	4	0	1	12	2	0	0	0	0	0
...............TACGTGCGAAACTGCGAGAGCTGC................................................................................................................................................	24	4	5.25	21	0	0	0	0	0	0	0	13	2	2	4	0	0	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATAAAGT.........................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	2	0	1	0	0	0	2	0	0	0	0
......GTAAGAAAGTACGTGCGAAACTGCGAA......................................................................................................................................................	27	2	5.00	10	0	0	0	0	0	0	0	1	0	1	0	0	7	1	0	0	0
...........AAAGTACGTGCGAAA.............................................................................................................................................................	15	2	4.50	9	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0
...........AAAGTACGTGCGAAAC............................................................................................................................................................	16	2	4.50	9	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0
........................................TAAAGTACAAGCCCA--------GCCAGCTACAGGC...........................................................................................................	28	1	4.00	4	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0
.................CGTGCGAAACTGCGAGAGCTGCATA.............................................................................................................................................	25	1	4.00	4	0	0	1	0	0	0	0	0	0	0	2	0	1	0	0	0	0
......GTAAGAAAGTACGTGCGAAACT...........................................................................................................................................................	22	2	4.00	8	0	0	0	0	0	0	0	2	0	1	4	0	0	1	0	0	0
...........AAAGTACGTGCGAAACTG..........................................................................................................................................................	18	2	4.00	8	0	0	0	0	3	1	0	0	0	0	4	0	0	0	0	0	0
........................................TAAAGTACAAGCCCA--------GCCAGCTAC...............................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	0	0
..........GAAAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	26	2	4.00	8	0	0	0	1	0	0	0	1	0	0	6	0	0	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATA.............................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAA....................................................................................................................................................	24	2	3.50	7	0	0	0	0	0	0	0	0	0	0	2	0	5	0	0	0	0
................ACGTGCGAAACTGCGAGAGCTGCA...............................................................................................................................................	24	4	3.50	14	0	0	0	0	0	0	0	2	0	0	12	0	0	0	0	0	0
.................CGTGCGAAACTGCGAGAGC...................................................................................................................................................	19	4	3.25	13	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0
....................................TGCATAAAGTACAAGCCCA--------GCCAG...................................................................................................................	24	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0
...................TGCGAAACTGCGAGAGCTGCATAA............................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCTGC................................................................................................................................................	28	2	3.00	6	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0
...............................AGAGCTGCATAAAGTACAAGCCCA--------GC......................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................GCGAAACTGCGAGAGCTGCATAAAG..........................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0
........................................TAAAGTACAAGCCCA--------GCCAGCTACAGGCGGC........................................................................................................	31	1	3.00	3	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCA..................................................................................................................................................	26	2	3.00	6	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	0	0
........................AACTGCGAGAGCTGCATAAAGTACAA.....................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0
...............TACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	23	4	3.00	12	0	0	0	0	0	0	0	7	0	3	2	0	0	0	0	0	0
..................GTGCGAAACTGCGAGAGCTGCATAA............................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
........................AACTGCGAGAGCTGCATAAAGTAC.......................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
........................................TAAAGTACAAGCCCA--------GCCAGCTACA..............................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCTGCA...............................................................................................................................................	29	2	3.00	6	0	0	2	3	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................AAACTGCGAGAGCTGCATAAAGTAC.......................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
...............TACGTGCGAAACTGCGAGAGCT..................................................................................................................................................	22	4	2.50	10	0	0	0	0	0	0	0	5	0	0	5	0	0	0	0	0	0
........AAGAAAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	28	2	2.50	5	0	0	0	0	0	0	0	3	0	1	1	0	0	0	0	0	0
.............................................TACAAGCCCA--------GCCAGCTACAGGCGGA........................................................................................................	26	3	2.33	7	0	0	0	0	0	0	5	2	0	0	0	0	0	0	0	0	0
...................TGCGAAACTGCGAGAGC...................................................................................................................................................	17	10	2.20	22	0	0	0	0	0	0	3	0	1	1	17	0	0	0	0	0	0
....................................TGCATAAAGTACAAGCCCA--------GCCAGCTA................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.........AGAAAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	27	2	2.00	4	0	0	0	0	0	0	0	1	0	2	0	0	1	0	0	0	0
.........................................AAAGTACAAGCCCA--------GCCAGCTACAGGC...........................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
................ACGTGCGAAACTGCGAGAGCTGCATA.............................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TAAAGTACAAGCCCA--------GCCAGCTACAGG............................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.............AGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	23	3	2.00	6	0	0	0	2	0	0	0	0	0	0	4	0	0	0	0	0	0
....................................TGCATAAAGTACAAGCCCA--------GCCA....................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATAAT...........................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...................TGCGAAACTGCGAGAGCTGC................................................................................................................................................	20	9	2.00	18	0	0	0	0	0	0	9	0	8	1	0	0	0	0	0	0	0
..................GTGCGAAACTGCGAGAGCTGCATA.............................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATAAAGTACA......................................................................................................................................	30	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATAAAGA.........................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
......................GAAACTGCGAGAGCTGCATAAAGTACA......................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATATT...........................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.........................................AAAGTACAAGCCCA--------GCCAGCTACAGGCGGC........................................................................................................	30	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
........................................TAAAGTACAAGCCCA--------GCCAGCTA................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
...............................AGAGCTGCATAAAGTACAAGCCCA--------GCC.....................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
........................................TAAAGTACAAGCCCA--------GCCA....................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......TAAGAAAGTACGTGCGAAACTGCGA.......................................................................................................................................................	25	2	2.00	4	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0
....................GCGAAACTGCGAGAG....................................................................................................................................................	15	10	1.70	17	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0
........AAGAAAGTACGTGCGAAACTGCGAG......................................................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
......GTAAGAAAGTACGTGC.................................................................................................................................................................	16	2	1.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......TAAGAAAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	29	2	1.50	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
................ACGTGCGAAACTGCGAGA.....................................................................................................................................................	18	4	1.50	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
.............................................TACAAGCCCA--------GCCAGCTACAGGC...........................................................................................................	23	2	1.50	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
.............................................TACAAGCCCA--------GCCAGCTACAGGCGGGG.......................................................................................................	27	2	1.50	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
................ACGTGCGAAACTGCGAGAGCT..................................................................................................................................................	21	4	1.50	6	0	0	1	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.......TAAGAAAGTACGTGCGAAACTG..........................................................................................................................................................	22	2	1.50	3	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAT....................................................................................................................................................	24	2	1.50	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
.......TAAGAAAGTACGTGCGAAACTGCGAGA.....................................................................................................................................................	27	2	1.50	3	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0
...........................................AGTACAAGCCCA--------GCCAGCTACAGGCGGC........................................................................................................	28	2	1.50	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
.....................CGAAACTGCGAGAGC...................................................................................................................................................	15	10	1.40	14	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0
............AAGTACGTGCGAAACTGCGAGAG....................................................................................................................................................	23	3	1.33	4	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0
............AAGTACGTGCGAAACTGCGAGAGCTGC................................................................................................................................................	27	3	1.33	4	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0
............AAGTACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	26	3	1.33	4	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAAT...................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...............................AGAGCTGCATAAAGTACAAGCCC.................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................AGAGCTGCATAAAGTACAAGCCCA--------GCCAT...................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGT.....................................................................................................................................................	23	2	1.00	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
............................GCGAGAGCTGCATAAAGTACA......................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................AAACTGCGAGAGCTGCATAAAGTA........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAA......................................................................................................................................................	22	2	1.00	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATACT...........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............AGTACGTGCGAAACTGCGAGAGCTGC................................................................................................................................................	26	3	1.00	3	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0
........................................TAAAGTACAAGCCCA--------GCCAGCTACAG.............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCATAT............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......GTAAGAAAGTACGTGCGAAACTGT.........................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
.............................................TACAAGCCCA--------GCCAGCTACAGGCGGT........................................................................................................	26	3	1.00	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCA...............................................................................................................................................	21	9	1.00	9	0	0	0	0	0	0	4	1	3	0	1	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGA...................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................TGCATAAAGTACAAGCCCA--------GCCAGCA.................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......GTAAGAAAGTACGTGCGAAA.............................................................................................................................................................	20	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............AGTACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	25	3	1.00	3	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGATT...................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCTGCATA.............................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................AAACTGCGAGAGCTGCATAAAGTACAA.....................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................TGCATAAAGTACAAGCCCA--------GC......................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................GCGAGAGCTGCATAAAG..........................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................AGCTGCATAAAGTACAAGCCCA--------GCCAG...................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........GAAAGTACGTGCGAAACTGCGAGA.....................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........AAGAAAGTACGTGCGAAACTGCGAGA.....................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
.......................................ATAAAGTACAAGCCCA--------GCCAGCT.................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................TAAAGTACAAGCCCA--------GCCAG...................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................CGAAACTGCGAGAGCTGCATAAAGTA........................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............AAGTACGTGCGAAACTGCGAGAGCA..................................................................................................................................................	25	3	1.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......GTAAGAAAGTACGTGCGAAACTGCGT.......................................................................................................................................................	26	2	1.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................GCATAAAGTACAAGCCCA--------........................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................GTGCGAAACTGCGAGAGCTGCA...............................................................................................................................................	22	5	0.80	4	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0
..............GTACGTGCGAAACTGCGAGAG....................................................................................................................................................	21	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
................ACGTGCGAAACTGCGAG......................................................................................................................................................	17	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............GTACGTGCGAAACTGCG........................................................................................................................................................	17	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
................ACGTGCGAAACTGCGA.......................................................................................................................................................	16	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............TACGTGCGAAACTGCGAGA.....................................................................................................................................................	19	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.............AGTACGTGCGAAACTGC.........................................................................................................................................................	17	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................GTGCGAAACTGCGAGAGCTG.................................................................................................................................................	20	6	0.67	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
....................GCGAAACTGCGAGAGCTGCA...............................................................................................................................................	20	9	0.67	6	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	0
............AAGTACGTGCGAAACTGC.........................................................................................................................................................	18	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............AAGTACGTGCGAAACTGCGA.......................................................................................................................................................	20	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................TACAGGCGGCCGGGAAGA------------------------------------------------------------------------------------------------	18	8	0.63	5	0	0	0	0	0	0	0	3	0	1	1	0	0	0	0	0	0
.....................................................CA--------GCCAGCTACAGGCGGCCGGGA...................................................................................................	23	7	0.57	4	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0
...................TGCGAAACTGCGAGAGCTGCAT..............................................................................................................................................	22	9	0.56	5	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0
.................CGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	21	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........AAGAAAGTACGTGCGAAACTGCGAGAA....................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCTGCG...............................................................................................................................................	29	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CGTAAGAAAGTACGTGCGAAACTGCGAG......................................................................................................................................................	28	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TAAGAAAGTACGTGCGAAACTGC.........................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................TACAAGCCCA--------GCCAGCTACAGGCGT.........................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCG..................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................CGTGCGAAACTGCGAGAGCT..................................................................................................................................................	20	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................CGTGCGAAACTGCGA.......................................................................................................................................................	15	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......GTAAGAAAGTACGTGCGA...............................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............GTACGTGCGAAACTGCGAG......................................................................................................................................................	19	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........GAAAGTACGTGCGAAACT...........................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......GTAAGAAAGTACGTGCG................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAAAA..................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........GAAAGTACGTGCGAAACTGCGAGAG....................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......TAAGAAAGTACGTGCGAAA.............................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGAA..................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........AAAGTACGTGCGAAACTGCT........................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGAAA.................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................AAGCCCA--------GCCAGCTACAGGCGGC........................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCATA................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................ACGTGCGAAACTGCGAGAG....................................................................................................................................................	19	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................AAGCCCA--------GCCAGCTACAGGCGGCCG......................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................ACGTGCGAAACTGCG........................................................................................................................................................	15	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......GTAAGAAAGTACGTGCGAA..............................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGC.....................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCAAA................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCTA.................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......GTAAGAAAGTACGTGCGAAACTGCGG.......................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGAAAGTACGTGCGAAACTG..........................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................ACAAGCCCA--------GCCAGCTACAGGCGGCCG......................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCC..................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACGTGCGAAACTGCGAGAGCTGC................................................................................................................................................	23	4	0.50	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
................ACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	22	4	0.50	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAAA...................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......TAAGAAAGTACGTGCGAAACTGCGAG......................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........AAAGTACGTGCGAAACTGCGAGAGCTTT................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................AGCCCA--------GCCAGCTACAGGCGGCCG......................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......GTAAGAAAGTACGTGCGAAACTGCGAGT.....................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......GTAAGAAAGTACGTG..................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................CGTGCGAAACTGCGAGAGCTGCA...............................................................................................................................................	23	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............GTACGTGCGAAACTGCGA.......................................................................................................................................................	18	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......GTAAGAAAGTACGTGCGAAAC............................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AG--ACGTAAGGAAGTACGTGCGAAACTGCGAGAGCTGCATGAAGTACAAGCTCAACGGGACAGTCAGCTACAGGCGGCCGGGAAGA------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........GAAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	25	2	293.50	587	412	3	157	15
...........GAAGTACGTGCGAAACTGCGAGAG....................................................................................................................................................	24	2	124.00	248	140	0	103	5
...........GAAGTACGTGCGAAACTGCGAGA.....................................................................................................................................................	23	2	42.50	85	59	1	23	2
............AAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	24	3	14.33	43	40	0	2	1
...........GAAGTACGTGCGAAACTGCGAG......................................................................................................................................................	22	2	13.00	26	22	0	4	0
........................................TGAAGTACAAGCTCAACGGGACAGTC.....................................................................................................................	26	1	12.00	12	8	0	4	0
........................................TGAAGTACAAGCTCAACGGGACAGT......................................................................................................................	25	1	9.00	9	4	0	4	1
....................................TGCATGAAGTACAAGCTCAACGGGACA........................................................................................................................	27	1	8.00	8	1	0	7	0
........AAGGAAGTACGTGCGAAACTGCGA.......................................................................................................................................................	24	2	7.50	15	14	0	0	1
....................................TGCATGAAGTACAAGCTCAACGGGA..........................................................................................................................	25	1	6.00	6	1	0	4	1
........AAGGAAGTACGTGCGAAACTGCGAG......................................................................................................................................................	25	2	6.00	12	12	0	0	0
...........GAAGTACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	27	2	5.50	11	8	1	2	0
........AAGGAAGTACGTGCGAAACTGCGAGA.....................................................................................................................................................	26	2	5.00	10	10	0	0	0
....................................TGCATGAAGTACAAGCTCAACGG............................................................................................................................	23	1	5.00	5	4	0	1	0
....................................TGCATGAAGTACAAGCTCAACGGGAC.........................................................................................................................	26	1	5.00	5	0	0	5	0
...........GAAGTACGTGCGAAACTGCGAGAGCT..................................................................................................................................................	26	2	4.50	9	6	0	3	0
....................................TGCATGAAGTACAAGCTCAACGGG...........................................................................................................................	24	1	4.00	4	2	0	2	0
........AAGGAAGTACGTGCGAAACTGCG........................................................................................................................................................	23	2	4.00	8	8	0	0	0
..........................................AAGTACAAGCTCAACGGGACAGTCAGC..................................................................................................................	27	1	3.00	3	3	0	0	0
........................................TGAAGTACAAGCTCAACGGGACAG.......................................................................................................................	24	1	3.00	3	1	0	2	0
....................................................TCAACGGGACAGTCAGCTACAGGCGG.........................................................................................................	26	1	3.00	3	1	0	2	0
............AAGTACGTGCGAAACTGCGAGAG....................................................................................................................................................	23	3	2.67	8	7	0	1	0
....................................................TCAACGGGACAGTCAGCTACAGGCGGCC.......................................................................................................	28	1	2.00	2	2	0	0	0
.............................................TACAAGCTCAACGGGACAGTCAGC..................................................................................................................	24	1	2.00	2	2	0	0	0
..................................................GCTCAACGGGACAGTCAGCTACAGG............................................................................................................	25	1	2.00	2	1	0	1	0
...................................................CTCAACGGGACAGTCAGCTACAGGCGGC........................................................................................................	28	1	2.00	2	2	0	0	0
............................................GTACAAGCTCAACGGGACAGTCAGC..................................................................................................................	25	1	2.00	2	2	0	0	0
....................................................TCAACGGGACAGTCAGCTACAGGCGGC........................................................................................................	27	1	2.00	2	2	0	0	0
.............AGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	23	3	2.00	6	6	0	0	0
........AAGGAAGTACGTGCGAAACTGC.........................................................................................................................................................	22	2	2.00	4	3	0	1	0
...........GAAGTACGTGCGAAACTGCGA.......................................................................................................................................................	21	2	2.00	4	3	0	1	0
........AAGGAAGTACGTGCGAAACTGCGAGAG....................................................................................................................................................	27	2	1.50	3	3	0	0	0
...........GAAGTACGTGCGAAACTGCG........................................................................................................................................................	20	2	1.50	3	3	0	0	0
...........GAAGTACGTGCGAAACTGCGAGAGCTGC................................................................................................................................................	28	2	1.50	3	2	1	0	0
............AAGTACGTGCGAAACTGCGAGA.....................................................................................................................................................	22	3	1.33	4	4	0	0	0
.............................................................CAGTCAGCTACAGGCGGCCGGGAAG.................................................................................................	25	1	1.00	1	1	0	0	0
........AAGGAAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	28	2	1.00	2	2	0	0	0
.....................................................CAACGGGACAGTCAGCTACAGGCGG.........................................................................................................	25	1	1.00	1	1	0	0	0
..........GGAAGTACGTGCGAAACTGCGAGA.....................................................................................................................................................	24	2	1.00	2	2	0	0	0
........................................................CGGGACAGTCAGCTACAGGCGGCCG......................................................................................................	25	1	1.00	1	1	0	0	0
.......................................................ACGGGACAGTCAGCTACAGGCGGCCGA.....................................................................................................	27	1	1.00	1	1	0	0	0
......................................................AACGGGACAGTCAGCTACAGGCGAA........................................................................................................	25	1	1.00	1	0	1	0	0
.........................................GAAGTACAAGCTCAACGGGACAGT......................................................................................................................	24	1	1.00	1	1	0	0	0
...........GAAGTACGTGCGAAACTGCGAGAGT...................................................................................................................................................	25	2	1.00	2	1	0	1	0
...........GAAGTACGTGCGAAACTGCGAGC.....................................................................................................................................................	23	2	1.00	2	2	0	0	0
............................................GTACAAGCTCAACGGGACAGTCAGCTAC...............................................................................................................	28	1	1.00	1	1	0	0	0
...................................................CTCAACGGGACAGTCAGCTACAGG............................................................................................................	24	1	1.00	1	1	0	0	0
........................................TGAAGTACAAGCTCAACGGGACA........................................................................................................................	23	1	1.00	1	0	0	1	0
.......................................ATGAAGTACAAGCTCAACGGGACAGT......................................................................................................................	26	1	1.00	1	0	0	1	0
...................................................CTCAACGGGACAGTCAGCTACAGGCGA.........................................................................................................	27	1	1.00	1	1	0	0	0
........................................TGAAGTACAAGCTCAACGGGACAGTA.....................................................................................................................	26	1	1.00	1	0	0	0	1
..............................................................AGTCAGCTACAGGCGGCCGGG....................................................................................................	21	1	1.00	1	0	0	0	1
.........AGGAAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	27	2	1.00	2	2	0	0	0
....................................TGCATGAAGTACAAGCTCAACGGGACAGT......................................................................................................................	29	1	1.00	1	0	1	0	0
..................................................GCTCAACGGGACAGTCAGCTACAGGCGG.........................................................................................................	28	1	1.00	1	0	0	1	0
........................................TGAAGTACAAGCTCAACGGGACAGTCA....................................................................................................................	27	1	1.00	1	1	0	0	0
....................................................TCAACGGGACAGTCAGCTACAGG............................................................................................................	23	1	1.00	1	0	0	1	0
....................................................TCAACGGGACAGTCAGCTACA..............................................................................................................	21	1	1.00	1	1	0	0	0
.................................................AGCTCAACGGGACAGTCAGCTACAGG............................................................................................................	26	1	1.00	1	1	0	0	0
...............................................CAAGCTCAACGGGACAGTCAGCTAC...............................................................................................................	25	1	1.00	1	1	0	0	0
......GTAAGGAAGTACGTGCGAAACTGC.........................................................................................................................................................	24	2	1.00	2	1	0	1	0
...........................TGCGAGAGCTGCATGAAGTACAAGCT..................................................................................................................................	26	1	1.00	1	0	0	1	0
....................................................TCAACGGGACAGTCAGCTACAGGCG..........................................................................................................	25	1	1.00	1	1	0	0	0
.............................................TACAAGCTCAACGGGACAGTCAGCTAC...............................................................................................................	27	1	1.00	1	1	0	0	0
.................................AGCTGCATGAAGTACAAGCTCAA...............................................................................................................................	23	1	1.00	1	0	0	1	0
...........................................AGTACAAGCTCAACGGGACAGTCAGC..................................................................................................................	26	1	1.00	1	1	0	0	0
.....................................GCATGAAGTACAAGCTCAACGGGACAG.......................................................................................................................	27	1	1.00	1	1	0	0	0
......................................................AACGGGACAGTCAGCTACAGGCGGCC.......................................................................................................	26	1	1.00	1	1	0	0	0
.............AGTACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	25	3	1.00	3	1	0	2	0
........................................TGAAGTACAAGCTCAACGGGA..........................................................................................................................	21	1	1.00	1	0	0	1	0
..............................................ACAAGCTCAACGGGACAGTCAGC..................................................................................................................	23	1	1.00	1	1	0	0	0
...................................................CTCAACGGGACAGTCAGCTACAGGCGG.........................................................................................................	27	1	1.00	1	1	0	0	0
.........AGGAAGTACGTGCGAAACTGCGAG......................................................................................................................................................	24	2	1.00	2	2	0	0	0
...................................................CTCAACGGGACAGTCAGCTACAGGC...........................................................................................................	25	1	1.00	1	0	0	1	0
.............AGTACGTGCGAAACTGCGAGAGCTGC................................................................................................................................................	26	3	0.67	2	2	0	0	0
...............TACGTGCGAAACTGCGAGAGCTGCA...............................................................................................................................................	25	3	0.67	2	0	0	2	0
...........GAAGTACGTGCGAAACTGCGAGAGCA..................................................................................................................................................	26	2	0.50	1	1	0	0	0
.G--ACGTAAGGAAGTACGTGCGAAACTG..........................................................................................................................................................	26	2	0.50	1	1	0	0	0
........AAGGAAGTACGTGCGAAACTGCAG.......................................................................................................................................................	24	2	0.50	1	1	0	0	0
.........AGGAAGTACGTGCGAAACTGCGAGA.....................................................................................................................................................	25	2	0.50	1	1	0	0	0
...........GAAGTACGTGCGAAACTGCGAGAGTCA.................................................................................................................................................	27	2	0.50	1	1	0	0	0
........AAGGAAGTACGTGCGAAACTGCGG.......................................................................................................................................................	24	2	0.50	1	1	0	0	0
...........GAAGTACGTGCGAAACTGCGAT......................................................................................................................................................	22	2	0.50	1	1	0	0	0
...........GAAGTACGTGCGAAACTGCGAGAT....................................................................................................................................................	24	2	0.50	1	1	0	0	0
........AAGGAAGTACGTGCGAAACTGCGTT......................................................................................................................................................	25	2	0.50	1	1	0	0	0
..........GGAAGTACGTGCGAAACTGCGAGAGC...................................................................................................................................................	26	2	0.50	1	1	0	0	0
......GTAAGGAAGTACGTGCGAAAC............................................................................................................................................................	21	2	0.50	1	0	0	1	0
.........AGGAAGTACGTGCGAAACTGC.........................................................................................................................................................	21	2	0.50	1	1	0	0	0
........AAGGAAGTACGTGCGAAACTGCGAT......................................................................................................................................................	25	2	0.50	1	1	0	0	0
............AAGTACGTGCGAAACTGCGAGAGCT..................................................................................................................................................	25	3	0.33	1	1	0	0	0
..............GTACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	24	3	0.33	1	0	0	0	1
...............TACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	23	3	0.33	1	1	0	0	0
.............AGTACGTGCGAAACTGCGAGAGCT..................................................................................................................................................	24	3	0.33	1	1	0	0	0
.............AGTACGTGCGAAACTGCGAGAGCTGCA...............................................................................................................................................	27	3	0.33	1	1	0	0	0
............AAGTACGTGCGAAACTGCGAGAGCTG.................................................................................................................................................	26	3	0.33	1	1	0	0	0
.............AGTACGTGCGAAACTGCGAGAGCTGT................................................................................................................................................	26	4	0.25	1	0	0	1	0
...........................TGCGAGAGCTGCATGAAGTACAAGC...................................................................................................................................	25	8	0.13	1	1	0	0	0
............................GCGAGAGCTGCATGAAGTACAAGC...................................................................................................................................	24	8	0.13	1	1	0	0	0
..............................GAGAGCTGCATGAAGTACAAG....................................................................................................................................	21	20	0.10	2	2	0	0	0
..........................CTGCGAGAGCTGCATGAAGT.........................................................................................................................................	20	20	0.05	1	0	0	1	0
..................GTGCGAAACTGCGAGAGCTGC................................................................................................................................................	21	20	0.05	1	1	0	0	0
...................TGCGAAACTGCGAGAGCTGCA...............................................................................................................................................	21	20	0.05	1	0	1	0	0
..........................CTGCGAGAGCTGCATGAAGTACAAG....................................................................................................................................	25	20	0.05	1	1	0	0	0
........................AACTGCGAGAGCTGCATGAAG..........................................................................................................................................	21	20	0.05	1	1	0	0	0
.....................CGAAACTGCGAGAGCTGCATGAA...........................................................................................................................................	23	20	0.05	1	0	0	1	0

droYak3

AG--ACGTCAGGAAATACGTAAGGAATTGCGAGAGCTGCATGAAATACAAGCCCA--------ACCAACTGCAAGCAGCCGGGAAAATGCTGACACAGGTGCCGGAAGAACCGTGGGCCACCGTATGTGCGGACTTTGTGGGCCC----ATTGCCGAGGTCA---------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................TGCGGACTTTGTGGGCCC----ATTGCCGAG.........................	27	12	1.83	22	0	0	0	0	0	0	0	0	0	0	22
..................................GCTGCATGAAATACAAGCCCA--------ACCAAC..................................................................................................................	27	15	1.53	23	0	15	8	0	0	0	0	0	0	0	0
...............................................................................................................................TGCGGACTTTGTGGGCCC----ATTGCCGAGG........................	28	12	1.50	18	0	0	3	0	0	0	0	0	0	0	15
........................................TGAAATACAAGCCCA--------ACCAACTGCA..............................................................................................................	25	13	0.92	12	0	12	0	0	0	0	0	0	0	0	0
..................................GCTGCATGAAATACAAGCCCA--------ACC.....................................................................................................................	24	19	0.74	14	0	9	5	0	0	0	0	0	0	0	0
.........................................................................................CTGACACAGGTGCCGGAAGAACC.......................................................................	23	20	0.70	14	0	8	6	0	0	0	0	0	0	0	0
.............................................................................GCCGGGAAAATGCTGACACAGGTGC.................................................................................	25	15	0.67	10	0	1	8	0	0	0	1	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAGAAC........................................................................	26	20	0.65	13	0	5	1	0	0	0	0	0	0	0	7
........................................TGAAATACAAGCCCA--------ACCAACTG................................................................................................................	23	13	0.62	8	0	7	1	0	0	0	0	0	0	0	0
.............................................................................................................................TGTGCGGACTTTGTGGGCCC----ATTGCC............................	26	12	0.58	7	0	1	6	0	0	0	0	0	0	0	0
..................................GCTGCATGAAATACAAGCCCA--------AC......................................................................................................................	23	19	0.58	11	0	9	2	0	0	0	0	0	0	0	0
..................................GCTGCATGAAATACAAGCCCA--------ACCA....................................................................................................................	25	19	0.53	10	0	9	1	0	0	0	0	0	0	0	0
........................................TGAAATACAAGCCCA--------ACCAACTGC...............................................................................................................	24	13	0.46	6	0	5	1	0	0	0	0	0	0	0	0
.......................................................................................................................ACCGTATGTGCGGACTTTGTGGGCC.......................................	25	20	0.45	9	0	0	9	0	0	0	0	0	0	0	0
...............................................................................................................................TGCGGACTTTGTGGGCCC----ATTGCC............................	24	12	0.42	5	0	0	5	0	0	0	0	0	0	0	0
.......................................ATGAAATACAAGCCCA--------ACCAACTGC...............................................................................................................	25	13	0.38	5	0	5	0	0	0	0	0	0	0	0	0
....................................................................................................GCCGGAAGAACCGTGGGCCACCGTA..........................................................	25	14	0.36	5	0	5	0	0	0	0	0	0	0	0	0
..................................................GCCCA--------ACCAACTGCAAGCAGCCGG.....................................................................................................	24	12	0.33	4	0	2	0	0	0	0	0	0	0	0	2
.............................................................................GCCGGGAAAATGCTGACACAGGTGCC................................................................................	26	15	0.33	5	0	0	4	1	0	0	0	0	0	0	0
..................................GCTGCATGAAATACAAGCCCA--------ACCAA...................................................................................................................	26	15	0.33	5	0	5	0	0	0	0	0	0	0	0	0
.......................................................................................TGCTGACACAGGTGCCGGAAGAACC.......................................................................	25	20	0.30	6	0	2	4	0	0	0	0	0	0	0	0
....................................................................................................GCCGGAAGAACCGTGGGCCACCGT...........................................................	24	14	0.29	4	0	4	0	0	0	0	0	0	0	0	0
...................................................................................................TGCCGGAAGAACCGTGGGCCAC..............................................................	22	14	0.29	4	0	2	2	0	0	0	0	0	0	0	0
...................................................................................................TGCCGGAAGAACCGTGGGCCACCGTA..........................................................	26	14	0.29	4	0	2	1	1	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAGAACC.......................................................................	27	18	0.28	5	0	3	2	0	0	0	0	0	0	0	0
.........................................................................AGCAGCCGGGAAAATGCTGACACAGGT...................................................................................	27	15	0.27	4	0	0	1	0	0	0	0	0	0	0	3
.........................................................................AGCAGCCGGGAAAATGCTGACACAGG....................................................................................	26	15	0.27	4	0	3	1	0	0	0	0	0	0	0	0
...................................................................................................................GGCCACCGTATGTGCGGACTTTGTGG..........................................	26	19	0.26	5	0	2	2	1	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAGA..........................................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
.........................................................................................CTGACACAGGTGCCGGAAGAACCGTG....................................................................	26	13	0.23	3	0	2	0	0	0	0	1	0	0	0	0
.........................................................................................CTGACACAGGTGCCGGAAGAACCG......................................................................	24	13	0.23	3	0	3	0	0	0	0	0	0	0	0	0
.....................................................................TGCAAGCAGCCGGGAAAATGCTGACA........................................................................................	26	14	0.21	3	0	2	1	0	0	0	0	0	0	0	0
.....................................................................TGCAAGCAGCCGGGAAAATGCTGACAC.......................................................................................	27	14	0.21	3	0	0	3	0	0	0	0	0	0	0	0
....................................................................................................GCCGGAAGAACCGTGGGCCACC.............................................................	22	14	0.21	3	0	2	1	0	0	0	0	0	0	0	0
...............................................................................CGGGAAAATGCTGACACAGGTGCC................................................................................	24	15	0.20	3	0	0	3	0	0	0	0	0	0	0	0
.........................................................................................CTGACACAGGTGCCGGAAGAAC........................................................................	22	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAGAATT.......................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4
.....................................................................................AATGCTGACACAGGTGCCGGAA............................................................................	22	20	0.20	4	0	3	1	0	0	0	0	0	0	0	0
...............................................................................................................................TGCGGACTTTGTGGGCCC----ATTGCCGA..........................	26	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0
........................................TGAAATACAAGCCCA--------ACCAACTGCAAG............................................................................................................	27	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
.............................................TACAAGCCCA--------ACCAACTGCAAGCAGCC.......................................................................................................	27	12	0.17	2	0	1	1	0	0	0	0	0	0	0	0
.................................................................................................................TGGGCCACCGTATGTGCGGACTTTGTG...........................................	27	19	0.16	3	0	3	0	0	0	0	0	0	0	0	0
...................................CTGCATGAAATACAAGCCCA--------ACC.....................................................................................................................	23	19	0.16	3	0	3	0	0	0	0	0	0	0	0	0
.........................................................................................CTGACACAGGTGCCGGAAGAACCGT.....................................................................	25	13	0.15	2	0	1	1	0	0	0	0	0	0	0	0
.............................................TACAAGCCCA--------ACCAACTGCAAGCAGC........................................................................................................	26	13	0.15	2	0	1	1	0	0	0	0	0	0	0	0
.......................................ATGAAATACAAGCCCA--------ACCAACTG................................................................................................................	24	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................CAGGTGCCGGAAGAACCGTGGGCC................................................................	24	13	0.15	2	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................TATGTGCGGACTTTGTGGGCCC----..................................	22	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................ACCGTATGTGCGGACTTTGTGGGCCC----..................................	26	20	0.15	3	1	0	2	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAG...........................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................TATGTGCGGACTTTGTGGGC........................................	20	20	0.15	3	0	1	0	2	0	0	0	0	0	0	0
...........................................................................................................GAACCGTGGGCCACCGTATGTGCGGAC.................................................	27	14	0.14	2	0	1	1	0	0	0	0	0	0	0	0
....................................................................................................GCCGGAAGAACCGTGGGCCACCG............................................................	23	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0
....................................TGCATGAAATACAAGCCCA--------ACCAAC..................................................................................................................	25	15	0.13	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................GGGAAAATGCTGACACAGGTGCCGG..............................................................................	25	15	0.13	2	0	1	1	0	0	0	0	0	0	0	0
...................................CTGCATGAAATACAAGCCCA--------ACCA....................................................................................................................	24	19	0.11	2	0	1	1	0	0	0	0	0	0	0	0
.................................................................................................................TGGGCCACCGTATGTGCGGACTTTG.............................................	25	19	0.11	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................GGCCACCGTATGTGCGGACTTTGTGGG.........................................	27	19	0.11	2	0	1	0	1	0	0	0	0	0	0	0
...................................................................................................................GGCCACCGTATGTGCGGACTTTGTG...........................................	25	19	0.11	2	0	2	0	0	0	0	0	0	0	0	0
.G--ACGTCAGGAAATACGTAAGGAA.............................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
....ACGTCAGGAAATACGTAAGGAA.............................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................CACCGTATGTGCGGACTTTGTGGGC........................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................TGCTGACACAGGTGCCGGAAGAT.........................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
......................................................................................................................CACCGTATGTGCGGACTTTGTGGGCC.......................................	26	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAGTT.........................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................CCGTATGTGCGGACTTTGTGGGCCC----A.................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................................ATGAAATACAAGCCCA--------ACCAACTGCAA.............................................................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................TGAAATACAAGCCCA--------ACCAACTGCAAGCA..........................................................................................................	29	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................TATGTGCGGACTTTGTGGGCCC----A.................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................GTGCGGACTTTGTGGGCCC----ATTGCC............................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................ACCGTATGTGCGGACTTTGTGGGCCC----A.................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................TGAAATACAAGCCCA--------ACCAACTGCAAGC...........................................................................................................	28	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................GGACTTTGTGGGCCC----ATTGCCGAGGT.......................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................ACAGGTGCCGGAAGAACCGTGGGC.................................................................	24	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................GACTTTGTGGGCCC----ATTGCCGAG.........................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................GAAATACAAGCCCA--------ACCAACTGC...............................................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................ACCAACTGCAAGCAGCCGGGAAAATGCT............................................................................................	28	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................CACAGGTGCCGGAAGAACCGTGGGC.................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......................................................A--------ACCAACTGCAAGCAGCCGGGAAAATGC.............................................................................................	28	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.......................................ATGAAATACAAGCCCA--------ACCAACTGCA..............................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................CAGGTGCCGGAAGAACCGTGGGCCACC.............................................................	27	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................TGACACAGGTGCCGGAAGAACCGTG....................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................TGAAATACAAGCCCA--------ACCAACTGCT..............................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................CACAGGTGCCGGAAGAACCGTG....................................................................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................CAACTGCAAGCAGCCGGGAAAATGCT............................................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................AGGTGCCGGAAGAACCGTGGGC.................................................................	22	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................GACACAGGTGCCGGAAGAACCGTG....................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......................................................A--------ACCAACTGCAAGCAGCCGGGAA..................................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................GCGGACTTTGTGGGCCC----ATTGC.............................	22	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.........................................GAAATACAAGCCCA--------ACCAACTGCA..............................................................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................GACACAGGTGCCGGAAGAACCGTGGGC.................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................GGACTTTGTGGGCCC----ATTGCCGAGGC.......................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................GGACTTTGTGGGCCC----ATTGCCGAGG........................	25	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAGAACCG......................................................................	28	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................GTGCCGGAAGAACCGTGGGCC................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................AGAACCGTGGGCCACCGTATGTGCGGAC.................................................	28	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................GCCGGAAGAACCGTGGGCCACCGTATA........................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................GCCGGAAGAACCGTGGGC.................................................................	18	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................TGCAAGCAGCCGGGAAAATGCTGA..........................................................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
........................................TGAAATACAAGCCCA--------ACCAACTGCAT.............................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................TGCAAGCAGCCGGGAAAATGCTGAC.........................................................................................	25	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................GGTGCCGGAAGAACCGTGGGCCACCG............................................................	26	14	0.07	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................CCGGAAGAACCGTGGGCCACCGTATG........................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................GGTGCCGGAAGAACCGTGGGC.................................................................	21	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................AAGAACCGTGGGCCACCGTATGTGC.....................................................	25	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................TGCCGGAAGAACCGTGGGCCACCG............................................................	24	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................ACCGTGGGCCACCGTATGTGCGGAC.................................................	25	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................GCCGGAAGAACCGTGGGCCA...............................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................CCGGAAGAACCGTGGGCCACC.............................................................	21	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CCGGAAGAACCGTGGGCCACCG............................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................GTGGGCCACCGTATGTGC.....................................................	18	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................AACCGTGGGCCACCGTATGTGC.....................................................	22	14	0.07	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................CCGGAAGAACCGTGGGCCACCGTA..........................................................	24	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................TGCCGGAAGAACCGTGGGCCACCGG...........................................................	25	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................GAAGAACCGTGGGCCACCGTATGTGCG....................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................GGAAGAACCGTGGGCCACCGTATGT.......................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................GCCGGAAGAACCGTGGGCCAC..............................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................TGCCGGAAGAACCGTGGGCCACT.............................................................	23	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CCGGAAGAACCGTGGGCCACCGT...........................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................CTGCATGAAATACAAGCCCA--------ACCAAT..................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................TGCAAGCAGCCGGGAAAATGC.............................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................GAAAATGCTGACACAGGTGCCGGAT............................................................................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
........................................TGAAATACAAGCCCA--------ACCAACT.................................................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.......................................ATGAAATACAAGCCCA--------ACCAA...................................................................................................................	21	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................AGCCGGGAAAATGCTGACACAGGTGC.................................................................................	26	15	0.07	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................GGGAAAATGCTGACACAGGTGCC................................................................................	23	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................GCCGGGAAAATGCTGACACAGGTG..................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..................................GCTGCATGAAATACAAGCCCA--------ACCAATC.................................................................................................................	28	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................CTGCATGAAATACAAGCCCA--------ACCAAC..................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
........................................TGAAATACAAGCCCA--------ACCAAC..................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................GAAAATGCTGACACAGGTGCCGGAAGA..........................................................................	27	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................GCCGGGAAAATGCTGACACAGGTGCCG...............................................................................	27	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................GCCGGGAAAATGCTGACACA......................................................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................AGCAGCCGGGAAAATGCTGACACA......................................................................................	24	16	0.06	1	0	0	0	0	0	0	1	0	0	0	0
...........................TGCGAGAGCTGCATGAAATACAAGCCC.................................................................................................................................	27	18	0.06	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................AAATGCTGACACAGGTGCCGGAAGAACC.......................................................................	28	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................CCACCGTATGTGCGGACTTTGTGG..........................................	24	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................GCCACCGTATGTGCGGACTTTGTG...........................................	24	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................TGGGCCACCGTATGTGCGGACTTTGT............................................	26	19	0.05	1	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................GGGCCACCGTATGTGCGGACTTTGT............................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................GGGCCACCGTATGTGCGGACTTTGTG...........................................	26	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................CCACCGTATGTGCGGACTT...............................................	19	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................GGCCACCGTATGTGCGGACTTTGT............................................	24	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................CTGCATGAAATACAAGCCCA--------AC......................................................................................................................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................GCTGCATGAAATACAAGCCCA--------ACCATAC.................................................................................................................	28	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................ATGTGCGGACTTTGTGGGCCC----..................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAGAACT.......................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................AAAATGCTGACACAGGTGCCGG..............................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAGAA.........................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................TGCATGAAATACAAGCCCA--------ACC.....................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................ATGCTGACACAGGTGCCGGAAGAA.........................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................CGTATGTGCGGACTTTGTGGGCCC----..................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................AAATGCTGACACAGGTGCCGGAAGAA.........................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................ACCGTATGTGCGGACTTTGTGGGC........................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................AAAATGCTGACACAGGTGCCG...............................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................CTGACACAGGTGCCGGAAGA..........................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................CGTATGTGCGGACTTTGTGG..........................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................GACACAGGTGCCGGAAGAACC.......................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................ATGCTGACACAGGTGCCGGAAGAAC........................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................GCTGCATGAAATACAAGCC..................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAAT..........................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................TGACACAGGTGCCGGAAGAACC.......................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAGATT........................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................AATGCTGACACAGGTGCCGGAATT..........................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGACTC..........................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAT............................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................CGTATGTGCGGACTTTGTGGGCC.......................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAGT..........................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAAT...........................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................AATGCTGACACAGGTGCCGGAACT..........................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................TATGTGCGGACTTTGTGG..........................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................TGCTGACACAGGTGCCGGA.............................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................ATGTGCGGACTTTGTGGGCCT----..................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GG--ACATACGGAAATACGTTCGAAGCTGCGAAAGCTGCACGAAGTATAAGTCGA--------ACCAACTACAGGCGGCCGCGAAAATGCTGACGGAGGTG----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......TACGGAAATACGTTCGAAGCTGCGAA......................................................................................................................................................	26	2	0.50	1	0	0	0	0	1	0	0
......................................................A--------ACCAACTACAGGCGGCC.......................................................................................................	18	7	0.14	1	1	0	0	0	0	0	0

dmo_130

scaffold_6496:26469284-26469339 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.8	-19.5	-19.3