dmo_1287

intron [Dmoj\GI14068-in]; CDS [Dmoj\GI14068-cds]; exon [dmoj_GLEANR_14116:6]; intron [Dmoj\GI14068-in]; CDS [Dmoj\GI14068-cds]; exon [dmoj_GLEANR_14116:5]

##################################################-------------------------------------------###########################----------------------- GATTCAGCAAATCAACTGCTCCATCTTGGTCATCCAGGGACGGGACATAGGTAAGTGTGTAATGATATTGGTATTGACTTCGTTTAATTGCAGGTATTGGACTTCTGGCATCGGACATAGGTAAGTGTGTAATAAAATTGGAC ************************************************.......((((((......(((....))).......)))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body
.........................TTGGTCATCCAGGGACGGGACATAGG............................................................................................	26	0	1	4.00	4	3	1	0
....................................................................................TAATTGCAGGTATTGGACTTCTGGCA.................................	26	0	1	4.00	4	4	0	0
.....................................................................................................................TAGGTAAGTGTGTAATAAAATTGGA.	25	0	1	2.00	2	2	0	0
.......................TCTTGGTCATCCAGGGACGGGACATA..............................................................................................	26	0	1	2.00	2	2	0	0
...................TCCATCTTGGTCATCCAGGGACGGGACA................................................................................................	28	0	1	2.00	2	2	0	0
..........................................................................TGACTTCGTTTAATTGCAGGTATTGG...........................................	26	0	1	2.00	2	2	0	0
..............................................................................TTCGTTTAATTGCAGGTATTGGACTTC......................................	27	0	1	1.00	1	1	0	0
................................................................ATATTGGTATTGACTTAGGT...........................................................	20	2	1	1.00	1	0	0	1
..........................................................................TGACTTCGTTTAATTGCAGGTATTGGAC.........................................	28	0	1	1.00	1	1	0	0
...............................................TAGGTAAGTGTGTAATGATATTGG........................................................................	24	0	1	1.00	1	1	0	0
................................................................................................TTGGACTTCTGGCATCGGACATAGGT.....................	26	0	1	1.00	1	1	0	0
.......................................................TGTGTAATGATATTGGTATTGACTTCGT............................................................	28	0	1	1.00	1	1	0	0
...................................................................TTGGTATTGACTTCGTTTAATTGCAGG.................................................	27	0	1	1.00	1	1	0	0
................................................AGGTAAGTGTGTAATGATATTGG........................................................................	23	0	1	1.00	1	1	0	0
.......................................................................................TTGCAGGTATTGGACTTCTGGCATCGGAC...........................	29	0	1	1.00	1	1	0	0
.........................TTGGTCATCCAGGGACGGGACATAG.............................................................................................	25	0	1	1.00	1	0	1	0
...................................................................................TTAATTGCAGGTATTGGACTTCTGG...................................	25	0	1	1.00	1	1	0	0
...................................................................TTGGTATTGACTTCGTTTAATTGCAGGT................................................	28	0	1	1.00	1	1	0	0
.................................................................................................TGGACTTCTGGCATCGGACATAGG......................	24	0	1	1.00	1	1	0	0
.......................TCTTGGTCATCCAGGGACGGGACATAG.............................................................................................	27	0	1	1.00	1	1	0	0
............................................................AATGATATTGGTATTGACTTCG.............................................................	22	0	1	1.00	1	1	0	0
..........................TGGTCATCCAGGGACGGGACATAGG............................................................................................	25	0	1	1.00	1	1	0	0
...........................................................TAATGATATTGGTATTGACTTCGTT...........................................................	25	0	1	1.00	1	0	1	0
.........................TTGGTCATCCAGGGACGGGACATA..............................................................................................	24	0	1	1.00	1	1	0	0
....................................................................................TAATTGCAGGTATTGGACTTCTGGA..................................	25	1	1	1.00	1	1	0	0
.................................................................TATTGGTATTGACTTCGTTTAATT......................................................	24	0	1	1.00	1	1	0	0
.....................................................................................................................TAGGTAAGTGTGTAATAAAATTGGAC	26	0	1	1.00	1	1	0	0
........AAATCAACTGCTCCATCTTGGTCATCC............................................................................................................	27	0	1	1.00	1	1	0	0
.........................TTGGTCATCCAGGGACGGGACATAGGC...........................................................................................	27	1	1	1.00	1	0	1	0
..............................................................TGATATTGGTATTGACTTCGTTTAAT.......................................................	26	0	1	1.00	1	1	0	0
.........................................................TGTAATGATATTGGTATTGACTTCGTT...........................................................	27	0	1	1.00	1	1	0	0
..................................................................................TTTAATTGCAGGTATTGGACTTCTGGCA.................................	28	0	1	1.00	1	1	0	0
...................................................TAAGTGTGTAATGATATTGGTATTGAC.................................................................	27	0	1	1.00	1	1	0	0
.........................................................................................................TGGCATCGGACATAGGTAAGTGTG..............	24	0	1	1.00	1	1	0	0
..............................................................................TTCGTTTAATTGCAGGTATTGGAC.........................................	24	0	1	1.00	1	1	0	0

##################################################-------------------------------------------###########################-----------------------
GATTCAGCAAATCAACTGCTCCATCTTGGTCATCCAGGGACGGGACATAGGTAAGTGTGTAATGATATTGGTATTGACTTCGTTTAATTGCAGGTATTGGACTTCTGGCATCGGACATAGGTAAGTGTGTAATAAAATTGGAC
**************************************************.......((((((......(((....))).......)))))).**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

.........................TTGGTCATCCAGGGACGGGACATAGG............................................................................................

4.00

....................................................................................TAATTGCAGGTATTGGACTTCTGGCA.................................

4.00

.....................................................................................................................TAGGTAAGTGTGTAATAAAATTGGA.

2.00

.......................TCTTGGTCATCCAGGGACGGGACATA..............................................................................................

2.00

...................TCCATCTTGGTCATCCAGGGACGGGACA................................................................................................

2.00

..........................................................................TGACTTCGTTTAATTGCAGGTATTGG...........................................

2.00

..............................................................................TTCGTTTAATTGCAGGTATTGGACTTC......................................

1.00

................................................................ATATTGGTATTGACTTAGGT...........................................................

1.00

..........................................................................TGACTTCGTTTAATTGCAGGTATTGGAC.........................................

1.00

...............................................TAGGTAAGTGTGTAATGATATTGG........................................................................

1.00

................................................................................................TTGGACTTCTGGCATCGGACATAGGT.....................

1.00

.......................................................TGTGTAATGATATTGGTATTGACTTCGT............................................................

1.00

...................................................................TTGGTATTGACTTCGTTTAATTGCAGG.................................................

1.00

................................................AGGTAAGTGTGTAATGATATTGG........................................................................

1.00

.......................................................................................TTGCAGGTATTGGACTTCTGGCATCGGAC...........................

1.00

.........................TTGGTCATCCAGGGACGGGACATAG.............................................................................................

1.00

...................................................................................TTAATTGCAGGTATTGGACTTCTGG...................................

1.00

...................................................................TTGGTATTGACTTCGTTTAATTGCAGGT................................................

1.00

.................................................................................................TGGACTTCTGGCATCGGACATAGG......................

1.00

.......................TCTTGGTCATCCAGGGACGGGACATAG.............................................................................................

1.00

............................................................AATGATATTGGTATTGACTTCG.............................................................

1.00

..........................TGGTCATCCAGGGACGGGACATAGG............................................................................................

1.00

...........................................................TAATGATATTGGTATTGACTTCGTT...........................................................

1.00

.........................TTGGTCATCCAGGGACGGGACATA..............................................................................................

1.00

....................................................................................TAATTGCAGGTATTGGACTTCTGGA..................................

1.00

.................................................................TATTGGTATTGACTTCGTTTAATT......................................................

1.00

.....................................................................................................................TAGGTAAGTGTGTAATAAAATTGGAC

1.00

........AAATCAACTGCTCCATCTTGGTCATCC............................................................................................................

1.00

.........................TTGGTCATCCAGGGACGGGACATAGGC...........................................................................................

1.00

..............................................................TGATATTGGTATTGACTTCGTTTAAT.......................................................

1.00

.........................................................TGTAATGATATTGGTATTGACTTCGTT...........................................................

1.00

..................................................................................TTTAATTGCAGGTATTGGACTTCTGGCA.................................

1.00

...................................................TAAGTGTGTAATGATATTGGTATTGAC.................................................................

1.00

.........................................................................................................TGGCATCGGACATAGGTAAGTGTG..............

1.00

..............................................................................TTCGTTTAATTGCAGGTATTGGAC.........................................

1.00

CTAAGTCGTTTAGTTGACGAGGTAGAACCAGTAGGTCCCTGCCCTGTATCCATTCACACATTACTATAACCATAACTGAAGCAAATTAACGTCCATAACCTGAAGACCGTAGCCTGTATCCATTCACACATTATTTTAACCTG ************************************************.......((((((......(((....))).......)))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo
.....................................CCTGCCCTGTATCCATTCACACAT..................................................................................	24	0	1	3.00	3	3	0	0
....................................CCCTGCCCTGTATCCATTCACACAT..................................................................................	25	0	1	1.00	1	1	0	0
......................................CTGCCCTGTATCCATTCACACAT..................................................................................	23	0	1	1.00	1	1	0	0
................................................................................................................CCTGTATCCATTCACACATTATT........	23	0	1	1.00	1	1	0	0
..................................GTCCCTGCCCTGTATCCATTCACACAT..................................................................................	27	0	1	1.00	1	1	0	0
..........................................CCTGTATCCATTCACACATTACTAT............................................................................	25	0	1	1.00	1	0	1	0
..............................................................................................................AGCCTGTATCCATTCACACATTAT.........	24	0	1	1.00	1	1	0	0
..................................GTCCCTGCCCTGTATCCATT.........................................................................................	20	0	1	1.00	1	1	0	0
..........................................................................................................CCGTAGCCTGTATCCATTCACACAT............	25	0	1	1.00	1	1	0	0
....................................................................ACCATAACTGAAGCAAATTAACGTCC.................................................	26	0	1	1.00	1	1	0	0
.................................................................ATAACCATAACTGAAGCAAATTAA......................................................	24	0	1	1.00	1	1	0	0
.............................................GTATCCATTCACACATTACTATAA..........................................................................	24	0	1	1.00	1	1	0	0
..............CGACGAGGTAGAACCAGTAGGTCCCT.......................................................................................................	26	1	1	1.00	1	0	1	0
.............................................GTATCCATTCACACATTACTATAACCAT......................................................................	28	0	1	1.00	1	1	0	0
.........................................CCCTGTATCCATTCACACATTACG..............................................................................	24	1	1	1.00	1	0	1	0
.................................................CCATTCACACATTACTATAACCATAACT..................................................................	28	0	1	1.00	1	0	1	0
........................................GCCCTGTATCCATTCACACATTACT..............................................................................	25	0	1	1.00	1	1	0	0
......................................CTGCCCTGTATCCATTCACACATTACT..............................................................................	27	0	1	1.00	1	1	0	0
...........................................................................................................CGTAGCCTGTATCCATTCACACAT............	24	0	1	1.00	1	1	0	0
...........................................................................................................CGTAGCCTGTATCCATTCAC................	20	0	1	1.00	1	1	0	0
.......................AGAACCAGTAGGTCCCTGCCCTGTA...............................................................................................	25	0	1	1.00	1	1	0	0
.....TCGTTTAGTTGACGAGGTAGAAC...................................................................................................................	23	0	1	1.00	1	0	0	1
................................................................................................AACCTGAAGACCGTAGCCTGTATCCAT....................	27	0	1	1.00	1	1	0	0
.............TTGACGAGGTAGAACCAGTAGGTCCCT.......................................................................................................	27	0	1	1.00	1	1	0	0

CTAAGTCGTTTAGTTGACGAGGTAGAACCAGTAGGTCCCTGCCCTGTATCCATTCACACATTACTATAACCATAACTGAAGCAAATTAACGTCCATAACCTGAAGACCGTAGCCTGTATCCATTCACACATTATTTTAACCTG
**************************************************.......((((((......(((....))).......)))))).**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V041
embryo

.....................................CCTGCCCTGTATCCATTCACACAT..................................................................................

3.00

....................................CCCTGCCCTGTATCCATTCACACAT..................................................................................

1.00

......................................CTGCCCTGTATCCATTCACACAT..................................................................................

1.00

................................................................................................................CCTGTATCCATTCACACATTATT........

1.00

..................................GTCCCTGCCCTGTATCCATTCACACAT..................................................................................

1.00

..........................................CCTGTATCCATTCACACATTACTAT............................................................................

1.00

..............................................................................................................AGCCTGTATCCATTCACACATTAT.........

1.00

..................................GTCCCTGCCCTGTATCCATT.........................................................................................

1.00

..........................................................................................................CCGTAGCCTGTATCCATTCACACAT............

1.00

....................................................................ACCATAACTGAAGCAAATTAACGTCC.................................................

1.00

.................................................................ATAACCATAACTGAAGCAAATTAA......................................................

1.00

.............................................GTATCCATTCACACATTACTATAA..........................................................................

1.00

..............CGACGAGGTAGAACCAGTAGGTCCCT.......................................................................................................

1.00

.............................................GTATCCATTCACACATTACTATAACCAT......................................................................

1.00

.........................................CCCTGTATCCATTCACACATTACG..............................................................................

1.00

.................................................CCATTCACACATTACTATAACCATAACT..................................................................

1.00

........................................GCCCTGTATCCATTCACACATTACT..............................................................................

1.00

......................................CTGCCCTGTATCCATTCACACATTACT..............................................................................

1.00

...........................................................................................................CGTAGCCTGTATCCATTCACACAT............

1.00

...........................................................................................................CGTAGCCTGTATCCATTCAC................

1.00

.......................AGAACCAGTAGGTCCCTGCCCTGTA...............................................................................................

1.00

.....TCGTTTAGTTGACGAGGTAGAAC...................................................................................................................

1.00

................................................................................................AACCTGAAGACCGTAGCCTGTATCCAT....................

1.00

.............TTGACGAGGTAGAACCAGTAGGTCCCT.......................................................................................................

1.00

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6498:345247-345389 -	dmo_1287	GATTCAGCAAATCAACTGCTCCATCTTGGTCATCCAGGGACGGGACATAGGTAAGTGTGTAATGATATTGGTATTGACTTCGTTTAATTGCAGGTATTGGACTTCTGGCATCGGACATAGGTAAGTGTGTAATAAAATTGGAC

Species

Coordinate

Alignment

droMoj3

scaffold_6498:345247-345389 -

dmo_1287

GATTCAGCAAATCAACTGCTCCATCTTGGTCATCCAGGGACGGGACATAGGTAAGTGTGTAATGATATTGGTATTGACTTCGTTTAATTGCAGGTATTGGACTTCTGGCATCGGACATAGGTAAGTGTGTAATAAAATTGGAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GATTCAGCAAATCAACTGCTCCATCTTGGTCATCCAGGGACGGGACATAGGTAAGTGTGTAATGATATTGGTATTGACTTCGTTTAATTGCAGGTATTGGACTTCTGGCATCGGACATAGGTAAGTGTGTAATAAAATTGGAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................TTGGTCATCCAGGGACGGGACATAGG............................................................................................	26	1	4.00	4	3	0	0	0	1	0
....................................................................................TAATTGCAGGTATTGGACTTCTGGCA.................................	26	1	4.00	4	4	0	0	0	0	0
.....................................................................................................................TAGGTAAGTGTGTAATAAAATTGGA.	25	1	2.00	2	2	0	0	0	0	0
.......................TCTTGGTCATCCAGGGACGGGACATA..............................................................................................	26	1	2.00	2	2	0	0	0	0	0
...................TCCATCTTGGTCATCCAGGGACGGGACA................................................................................................	28	1	2.00	2	2	0	0	0	0	0
..........................................................................TGACTTCGTTTAATTGCAGGTATTGG...........................................	26	1	2.00	2	2	0	0	0	0	0
..............................................................................TTCGTTTAATTGCAGGTATTGGACTTC......................................	27	1	1.00	1	1	0	0	0	0	0
..........................................................................TGACTTCGTTTAATTGCAGGTATTGGAC.........................................	28	1	1.00	1	1	0	0	0	0	0
...............................................TAGGTAAGTGTGTAATGATATTGG........................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................TTGGACTTCTGGCATCGGACATAGGT.....................	26	1	1.00	1	1	0	0	0	0	0
.......................................................TGTGTAATGATATTGGTATTGACTTCGT............................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................................TTGGTATTGACTTCGTTTAATTGCAGG.................................................	27	1	1.00	1	1	0	0	0	0	0
................................................AGGTAAGTGTGTAATGATATTGG........................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................TTGCAGGTATTGGACTTCTGGCATCGGAC...........................	29	1	1.00	1	1	0	0	0	0	0
.........................TTGGTCATCCAGGGACGGGACATAG.............................................................................................	25	1	1.00	1	0	0	0	0	1	0
...................................................................................TTAATTGCAGGTATTGGACTTCTGG...................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................TTGGTATTGACTTCGTTTAATTGCAGGT................................................	28	1	1.00	1	1	0	0	0	0	0
.................................................................................................TGGACTTCTGGCATCGGACATAGG......................	24	1	1.00	1	1	0	0	0	0	0
.......................TCTTGGTCATCCAGGGACGGGACATAG.............................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................AATGATATTGGTATTGACTTCG.............................................................	22	1	1.00	1	1	0	0	0	0	0
..........................TGGTCATCCAGGGACGGGACATAGG............................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................TAATGATATTGGTATTGACTTCGTT...........................................................	25	1	1.00	1	0	0	0	0	1	0
.........................TTGGTCATCCAGGGACGGGACATA..............................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................TAATTGCAGGTATTGGACTTCTGGA..................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................TATTGGTATTGACTTCGTTTAATT......................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TAGGTAAGTGTGTAATAAAATTGGAC	26	1	1.00	1	1	0	0	0	0	0
........AAATCAACTGCTCCATCTTGGTCATCC............................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................TTGGTCATCCAGGGACGGGACATAGGC...........................................................................................	27	1	1.00	1	0	0	0	0	1	0
..............................................................TGATATTGGTATTGACTTCGTTTAAT.......................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................TGTAATGATATTGGTATTGACTTCGTT...........................................................	27	1	1.00	1	1	0	0	0	0	0
..................................................................................TTTAATTGCAGGTATTGGACTTCTGGCA.................................	28	1	1.00	1	1	0	0	0	0	0
...................................................TAAGTGTGTAATGATATTGGTATTGAC.................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................TGGCATCGGACATAGGTAAGTGTG..............	24	1	1.00	1	1	0	0	0	0	0
..............................................................................TTCGTTTAATTGCAGGTATTGGAC.........................................	24	1	1.00	1	1	0	0	0	0	0

dmo_1287

scaffold_6498:345297-345339 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.1	-3.9	-3.5