ID:

dmo_1283

 Coordinate:

scaffold_6498:343850-343954 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.7 -14.7 -14.3 -14.0

Flybase annnotation

CDS [Dmoj\GI14068-cds]; exon [dmoj_GLEANR_14116:7]; intron [Dmoj\GI14068-in]; CDS [Dmoj\GI14068-cds]; exon [dmoj_GLEANR_14116:8]; intron [Dmoj\GI14068-in]

No Repeatable elements found

mature
  1. scaffold_818:4754-4780 +
  2. scaffold_1858:1047-1073 +
  3. scaffold_2912:788-814 -
  4. scaffold_2939:229-255 -
  5. scaffold_4509:3677-3703 -
  6. scaffold_4728:4220-4246 +
  7. scaffold_5131:501-527 +
  8. scaffold_5565:998-1024 -
  9. scaffold_6415:452-478 -
  10. scaffold_6457:44213-44239 +
  11. dmo_1280  scaffold_6498:333985-334011 -
  12. dmo_1283  scaffold_6498:343866-343892 -
  13. scaffold_6640:2166-2192 +
  14. scaffold_6649:48033-48059 +
star
  1. scaffold_818:4703-4727 +
  2. scaffold_1858:996-1020 +
  3. scaffold_2939:282-306 -
  4. scaffold_4509:3730-3754 -
  5. scaffold_4728:4169-4193 +
  6. scaffold_4869:3152-3176 -
  7. scaffold_5131:450-474 +
  8. scaffold_5278:471-495 +
  9. scaffold_5565:1051-1075 -
  10. scaffold_6415:505-529 -
  11. scaffold_6457:44162-44186 +
  12. scaffold_6491:80738-80762 -
  13. scaffold_6498:334038-334062 -
  14. dmo_1283  scaffold_6498:343919-343943 -
  15. scaffold_6640:2115-2139 +
  16. scaffold_6649:47982-48006 +

Sense Strand Reads

------------------------------####################---------------------------------------------------------------------------------------------------------##################################################
AACTTAATATTAACTTATTCTATTTTGCAGGTACGTTGGTGGCAGTCATCGTGGACATCCTTCTTCGTCGCTGGAATGGTCGCAGCTCGTCAGATAAGTAGCCCTCTTGTTGTCGTCTAACGCTGATAATGGCTTGTGGTTCATTTTTATTTCAGTGTGCGGCTGCATACATTGTCATCGGTGGAATGCGTGCGTCCCGCGCAGC
*************************************************************.((.((..........(((((((((......(((((..((....))..))))).......))))....))))))).))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V049
head
 V056
head
..............TTATTCTATTTTGCAGGTACGTTGG...................................................................................................................................................................... 25 0 1 13.00 13 12 0 1 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGG.................................................................. 27 0 14 12.93 181 180 1 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCGCAGC....................................................................................................................... 25 0 16 9.75 156 143 10 1 2 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCCGCGC... 28 0 3 6.33 19 18 1 0 0 0 0
.........................TGCAGGTACGTTGGTGGCAGTCATCG.......................................................................................................................................................... 26 0 1 5.00 5 5 0 0 0 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCC....... 24 0 3 4.33 13 6 6 1 0 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCCG...... 25 0 3 4.33 13 11 2 0 0 0 0
......................TTTTGCAGGTACGTTGGTGGCAGTCA............................................................................................................................................................. 26 0 1 4.00 4 4 0 0 0 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCCGC..... 26 0 3 3.67 11 11 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCGCAG........................................................................................................................ 24 0 16 3.44 55 51 0 3 1 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCC........ 23 0 3 3.33 10 5 5 0 0 0 0
......................TTTTGCAGGTACGTTGGTGGCAGTC.............................................................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCCGCG.... 27 0 3 2.33 7 5 0 2 0 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTGCGTC......... 22 0 3 2.00 6 4 2 0 0 0 0
.........................TGCAGGTACGTTGGTGGCAGTCATCGTG........................................................................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0
.........................TGCAGGTACGTTGGTGGCAGTC.............................................................................................................................................................. 22 0 1 2.00 2 1 0 0 0 1 0
...........................................................................................................................................TTCATTTTTATTTCAGTGTGCGGC.......................................... 24 0 1 2.00 2 2 0 0 0 0 0
..............TTATTCTATTTTGCAGGTACGTTG....................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
......................TTTTGCAGGTACGTTGGTGGCAGT............................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGTG................................................................... 26 0 14 1.93 27 27 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTG..................................................................... 24 0 14 1.79 25 25 0 0 0 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTGCGT.......... 21 0 3 1.33 4 4 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTTTGG.................................................................. 27 1 14 1.21 17 17 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCGCAGCTCG.................................................................................................................... 28 0 16 1.19 19 19 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCGCAGCT...................................................................................................................... 26 0 16 1.13 18 16 2 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCGC.......................................................................................................................... 22 0 17 1.12 19 13 4 2 0 0 0
.................................................................................................................CGTCTAACGCTGATAATGGCTTGTGG.................................................................. 26 0 14 1.07 15 15 0 0 0 0 0
...............TATTCTATTTTGCAGGTACGTTGG...................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..........................GCAGGTACGTTGGTGGCAGTCAT............................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
.........TTAACTTATTCTATTTTGCAGGTACGT......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...................................TTGGTGGCAGTCATCGTGGACATCCT................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................TTCATTTTTATTTCAGTGTGCGGTC......................................... 25 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................TTCATTTTTATTTCAGTGTGCGGCT......................................... 25 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................................................................TTGTGGTTCATTTTTATTTCAGTGT............................................... 25 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................TTCATTTTTATTTCAGTGTGCGGCTGCA...................................... 28 0 1 1.00 1 1 0 0 0 0 0
......................TTTTGCAGGTACGTTGGTGG................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0
.........................TGCAGGTACGTTGGTGGCAGTCAT............................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
......................TTTTGCAGGTACGTTGGTGGCAGTCATC........................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0
......................TTTTGCAGGTACGTTGGTGGC.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..............................................CATCGTGGACATCCTTCTTCGTCGC...................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGT.................................................................... 25 0 14 0.93 13 13 0 0 0 0 0
..............................................................CTTCGTCGCTGGAATGGTCGCAGC....................................................................................................................... 24 0 16 0.88 14 14 0 0 0 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCCGA..... 26 1 3 0.67 2 0 2 0 0 0 0
...............................................................................................................................................................................CATCGGTGGAATGCGTGCGTCC........ 22 0 3 0.67 2 2 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCGCA......................................................................................................................... 23 0 17 0.65 11 11 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTT...................................................................... 23 0 14 0.64 9 9 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCG........................................................................................................................... 21 0 17 0.59 10 8 0 1 1 0 0
.............................................................TCTTCGTCGCTGGAATGGTCGCAGCTC..................................................................................................................... 27 0 16 0.56 9 8 0 1 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGGT................................................................. 28 0 14 0.50 7 7 0 0 0 0 0
.............................................................................................................TTGTCGTCTAACGCTGATAATGGCTTG..................................................................... 27 0 14 0.50 7 7 0 0 0 0 0
.........................................................................................TCAGATAAGTAGCCCTCTTGTTG............................................................................................. 23 0 16 0.44 7 7 0 0 0 0 0
..........................................................................................................TTGTTGTCGTCTAACGCTGATAATGG......................................................................... 26 0 13 0.38 5 5 0 0 0 0 0
..........................................................................................................TTGTTGTCGTCTAACGCTGATAATG.......................................................................... 25 0 13 0.38 5 5 0 0 0 0 0
.............................................................................................................TTGTCGTCTAACGCTGATAATGGC........................................................................ 24 0 14 0.36 5 4 0 1 0 0 0
............................................................................................................................................................................GTTCATCGGTGGAATGCGTGCGTCCCGCG.... 29 2 3 0.33 1 1 0 0 0 0 0
..............................................................................................................................................................................TCATCGGAGGAATGCGTGCGTC......... 22 1 3 0.33 1 0 1 0 0 0 0
...............................................................................................................................................................................CATCGGTGGAATGCGTGCGTCCCG...... 24 0 3 0.33 1 1 0 0 0 0 0
..............................................................................................................................................................................TGATCGGTGGAATGCGTGCGTCCC....... 24 1 3 0.33 1 0 1 0 0 0 0
...............................................................................................................................................................................CATCGGTGGAATGCGTGCGTCCCGC..... 25 0 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................................CATCGGTGGAATGCGTGCGTCCC....... 23 0 3 0.33 1 1 0 0 0 0 0
..............................................................................................................................................................................TCATCGGTGGACTGCGTGCGTCCCGCGC... 28 1 3 0.33 1 1 0 0 0 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTGCG........... 20 0 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................................CATCGGTGGAATGCGTGCGTCCCGCGC... 27 0 3 0.33 1 1 0 0 0 0 0
..............................................................................................................................................................................TCATCGGTGGAATGCGTG............. 18 0 3 0.33 1 1 0 0 0 0 0
.............................................................................................................................................................................CTCATCGGTGGAATGCGTGCGTCCCGCGC... 29 1 3 0.33 1 1 0 0 0 0 0
..............................................................................................................................................................................TCATCGGCGGAATGCGTGCGTCC........ 23 1 3 0.33 1 0 1 0 0 0 0
..............................................................................................................................................................................TGATCGGTGGAATGCGTGCGTCC........ 23 1 3 0.33 1 0 1 0 0 0 0
................................................................................................................................................................................GTCGGTGGAAGGCGTGCGTCC........ 21 2 3 0.33 1 0 0 1 0 0 0
..........................................................................................................TTGTTGTCGTCTAACGCTGATAATGGC........................................................................ 27 0 13 0.31 4 4 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGT............................................................................................................................. 19 0 17 0.29 5 1 2 1 1 0 0
...............................................................................................................................................................................CATCGGTGGAATGCGTCCGCT......... 21 3 4 0.25 1 1 0 0 0 0 0
..............................................................CTTCGTCGCTGGAATGGTCGCAG........................................................................................................................ 23 0 16 0.25 4 4 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTC............................................................................................................................ 20 0 17 0.24 4 2 1 0 1 0 0
.................................................................................................................CGTCTAACGCTGATAATGGCTTTTGG.................................................................. 26 1 14 0.21 3 3 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCT....................................................................... 22 0 14 0.21 3 3 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTTT.................................................................... 25 1 14 0.21 3 2 1 0 0 0 0
.............................................................................................................TTGTCGTCTAACGCTGATAATGGCT....................................................................... 25 0 14 0.21 3 2 1 0 0 0 0
..................................................................................................................GTCTAACGCTGATAATGGCTTGTGG.................................................................. 25 0 14 0.21 3 3 0 0 0 0 0
...................................................TGGACATCCTTCTTCGTCGCTGGAATGG.............................................................................................................................. 28 0 14 0.21 3 3 0 0 0 0 0
...TTAATATTAACTTATTCTATTTTGCAGG.............................................................................................................................................................................. 28 0 16 0.19 3 3 0 0 0 0 0
..............................................................CTTCGTCGCTGGAATGGTCGCAGCT...................................................................................................................... 25 0 16 0.19 3 3 0 0 0 0 0
..............................................................CTTCGTCGCTGGAATGGTCGCA......................................................................................................................... 22 0 17 0.18 3 3 0 0 0 0 0
...........................................................................ATGGTCGCAGCTCGTCAG................................................................................................................ 18 0 17 0.18 3 0 0 0 0 1 2
.................................................................................................................CGTCTAACGCTGATAATGGCTTGT.................................................................... 24 0 14 0.14 2 2 0 0 0 0 0
...................................................TGGACATCCTTCTTCGTCGCTGGAAT................................................................................................................................ 26 0 14 0.14 2 2 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCC....................................................................... 22 1 14 0.14 2 0 2 0 0 0 0
.................................................................................................................CGTCTAACGCTGATAATGGCTTG..................................................................... 23 0 14 0.14 2 2 0 0 0 0 0
.................................................................................................................CGTCTAACGCTGATAATGGCTTGTG................................................................... 25 0 14 0.14 2 2 0 0 0 0 0
......................................................................................TCGTCAGATAAGTAGCCCTCTTGTTG............................................................................................. 26 0 16 0.13 2 2 0 0 0 0 0
..............................................................CTTCGTCGCTGGAATGGTCGCAGCTC..................................................................................................................... 26 0 16 0.13 2 2 0 0 0 0 0
......................................................................................TCGTCAGATAAGTAGCCCTCTTG................................................................................................ 23 0 16 0.13 2 2 0 0 0 0 0
...............................................................TTCGTCGCTGGAATGGTCGCAGCTCG.................................................................................................................... 26 0 16 0.13 2 2 0 0 0 0 0
.........................................................TCCTTCTTCGTCGCTGGAATGGTCG........................................................................................................................... 25 0 16 0.13 2 2 0 0 0 0 0
.......................................................................TGGAATGGTCGCAGCTCGTCAG................................................................................................................ 22 0 17 0.12 2 1 0 1 0 0 0
...........................................AGGCATCGTGGGCAGCCTTC.............................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 1
........................................................................................................TCTTGTTGTCGTCTAACGCTGATAATGGC........................................................................ 29 0 13 0.08 1 1 0 0 0 0 0
........................................................................................................TCTTGTTGTCGTCTAACGCTGATAATG.......................................................................... 27 0 13 0.08 1 1 0 0 0 0 0
...........................................................................................................TGTTGTCGTCTAACGCTGATAATG.......................................................................... 24 0 13 0.08 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGGC................................................................. 28 1 14 0.07 1 1 0 0 0 0 0
................................................................................................................TTGTCTAACGCTGATAATGGCTTGC.................................................................... 25 2 14 0.07 1 0 1 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGT.................................................................. 27 1 14 0.07 1 1 0 0 0 0 0
..............................................................................................TAAGTAGCCCTCTTGTTGTCGTCTA...................................................................................... 25 0 14 0.07 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGA.................................................................. 27 1 14 0.07 1 1 0 0 0 0 0
.............................................................................................ATAAGTAGCCCTCTTGTTGTCGTCTAAC.................................................................................... 28 0 14 0.07 1 1 0 0 0 0 0
.........................................................................................................CTTGTTGTCGTCTAACGCTGATAA............................................................................ 24 0 14 0.07 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATTGCTTG..................................................................... 24 1 14 0.07 1 1 0 0 0 0 0
................................................................................................................TGGTCTAACGCTGATAATGGCTTGT.................................................................... 25 1 14 0.07 1 0 1 0 0 0 0
..............................................................................................................TGTCGTCTAACGCTGATAATGGC........................................................................ 23 0 14 0.07 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGCC................................................................. 28 2 14 0.07 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATCTAT....................................................................... 22 3 14 0.07 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGA.................................................................... 25 1 14 0.07 1 1 0 0 0 0 0
................................................................................................................CCGTCTAACGCTGATAATGGCTTGTGG.................................................................. 27 1 14 0.07 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGC........................................................................ 21 0 14 0.07 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTTTG................................................................... 26 1 14 0.07 1 1 0 0 0 0 0
..............................................................................................TAAGTAGCCCTCTTGTTGTCGTC........................................................................................ 23 0 14 0.07 1 1 0 0 0 0 0
.....................................................................................................CCCTCTTGTTGTCGTCTAACGCTGA............................................................................... 25 0 14 0.07 1 0 0 0 1 0 0
..............................................................................................................TGTCGTCTAACGCTGATAATGGCT....................................................................... 24 0 14 0.07 1 1 0 0 0 0 0
...................................................TGGACATCCTTCTTCGTCGCTGGAA................................................................................................................................. 25 0 14 0.07 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTTTTG.................................................................. 27 2 14 0.07 1 0 0 1 0 0 0
....................................................GGACATCCTTCTTCGTCGCTGGAAT................................................................................................................................ 25 0 14 0.07 1 1 0 0 0 0 0
.............................................................................................................TTGTCGTCTAACGCTGATAATGGCTTGTG................................................................... 29 0 14 0.07 1 1 0 0 0 0 0
.....................................................................................................CCCTCTTGTTGTCGTCTAACGCTGAT.............................................................................. 26 0 14 0.07 1 1 0 0 0 0 0
.............................................................................................................TTGTCGTCTAACGCTGATAATGGCTTT..................................................................... 27 1 14 0.07 1 1 0 0 0 0 0
...............................................................................................................GTCGTCTAACGCTGATAATGGCTTG..................................................................... 25 0 14 0.07 1 1 0 0 0 0 0
...............................................................................................................GTCGTCTAACGCTGATAATGGCTTGT.................................................................... 26 0 14 0.07 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGGG................................................................... 26 1 14 0.07 1 1 0 0 0 0 0
.................................................................................................................CGTCTAACGCTGATAATGGCTT...................................................................... 22 0 14 0.07 1 1 0 0 0 0 0
................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGGTT................................................................ 29 0 14 0.07 1 1 0 0 0 0 0
........................................................................................................TCTTGTTGTCGTCTAACGCTGATA............................................................................. 24 0 14 0.07 1 1 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCGCAGCGC..................................................................................................................... 27 1 16 0.06 1 0 1 0 0 0 0
............................................................TGCTTCGTCGCTGGATTGGTCGCAGCTC..................................................................................................................... 28 2 16 0.06 1 0 1 0 0 0 0
.........................................................................................TCAGATAAGTAGCCCTCTTGTTGCCCC......................................................................................... 27 3 16 0.06 1 1 0 0 0 0 0
...........................................................CTTCTTCGTCGCTGGAATGGTCGCAG........................................................................................................................ 26 0 16 0.06 1 1 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCGCAA........................................................................................................................ 24 1 16 0.06 1 1 0 0 0 0 0
...................................................................TCGCTGGAATGGTCGCAGCTCGTCAG................................................................................................................ 26 0 16 0.06 1 1 0 0 0 0 0
..CTTAATATTAACTTATTCTATTTTGC................................................................................................................................................................................. 26 0 16 0.06 1 1 0 0 0 0 0
.........................................................TCCTTCTTCGTCGCTGGAATGGTC............................................................................................................................ 24 0 16 0.06 1 1 0 0 0 0 0
......................................................................................TCGTCAGATAAGTAGCCCTCTTGT............................................................................................... 24 0 16 0.06 1 0 1 0 0 0 0
............................................................GTCTTCGTCGCTGGAATGGTCGCAGCT...................................................................................................................... 27 1 16 0.06 1 1 0 0 0 0 0
...TTAATATTAACTTATTCTATTTTGCAG............................................................................................................................................................................... 27 0 16 0.06 1 1 0 0 0 0 0
.......................................................................................CGTCAGATAAGTAGCCCTCTTGTTG............................................................................................. 25 0 16 0.06 1 1 0 0 0 0 0
.............................................................TCCTCGTCGCTGGAATGGTCGCAGCT...................................................................................................................... 26 1 16 0.06 1 0 1 0 0 0 0
....................................................................................GCTCGTCAGATAAGTAGCCCTCTTG................................................................................................ 25 0 16 0.06 1 1 0 0 0 0 0
............................................................ATCTTCGTCGCTGGAATGGTCGCAGC....................................................................................................................... 26 1 16 0.06 1 1 0 0 0 0 0
..........TAACTTATTCTATTTTGCAGG.............................................................................................................................................................................. 21 0 16 0.06 1 1 0 0 0 0 0
........................................................................................GTCAGATAAGTAGCCCTCTTGTTGCCC.......................................................................................... 27 2 16 0.06 1 0 1 0 0 0 0
..............................................................CTTCGTCGCTGAAATGGTCGCAGC....................................................................................................................... 24 1 16 0.06 1 1 0 0 0 0 0
.............................................................TCTTCGTCGCTTGAATGGTCGCAG........................................................................................................................ 24 1 16 0.06 1 1 0 0 0 0 0
..................................................................GTCGCTGGAATGGTCGCAGCTCGTCAG................................................................................................................ 27 0 16 0.06 1 0 0 1 0 0 0
..............TTATTCTATTTTGCAGGTA............................................................................................................................................................................ 19 0 16 0.06 1 1 0 0 0 0 0
.....................................................................GCTGGAATGGTCGCAGCTCGTCAG................................................................................................................ 24 0 16 0.06 1 0 0 0 0 0 1
................................................................TCGTCGCTGGAATGGTCGCAG........................................................................................................................ 21 0 16 0.06 1 1 0 0 0 0 0
.............................................................TCTTCGTCGCTAGAATGGTCGCAGC....................................................................................................................... 25 1 16 0.06 1 1 0 0 0 0 0
..............TTATTCTATTTTGCAGGT............................................................................................................................................................................. 18 0 16 0.06 1 1 0 0 0 0 0
...........AACTTATTCTATTTTGCAGGT............................................................................................................................................................................. 21 0 16 0.06 1 1 0 0 0 0 0
.........................................................................................TCAGATAAGTAGCCCTCTTGTC.............................................................................................. 22 1 16 0.06 1 0 1 0 0 0 0
............................................................GTCTTCGTCGCTGGAATGGTCGCAGC....................................................................................................................... 26 1 16 0.06 1 1 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGCCGCAGC....................................................................................................................... 25 1 16 0.06 1 1 0 0 0 0 0
....TAATATTAACTTATTCTATTTTGCAGG.............................................................................................................................................................................. 27 0 16 0.06 1 1 0 0 0 0 0
.............................................................TCGTCGTCGCTGGAATGGTCGCAGC....................................................................................................................... 25 1 16 0.06 1 1 0 0 0 0 0
..................................................................GTCGCTGGAATGGTCGCAGCTCGTCA................................................................................................................. 26 0 16 0.06 1 0 0 1 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCGCAGCTCGT................................................................................................................... 29 0 16 0.06 1 1 0 0 0 0 0
.......................................................................................CGTCAGATAAGTAGCCCTCTTTTC.............................................................................................. 24 2 16 0.06 1 1 0 0 0 0 0
.............................................................TCTTCATCGCTGGAATGGTCGCAGC....................................................................................................................... 25 1 16 0.06 1 0 1 0 0 0 0
..............................................................CTTCGTCGCTGGAATGGTCGCAGCTCG.................................................................................................................... 27 0 16 0.06 1 1 0 0 0 0 0
.............................................................TGTTCGTCGCTGGAATGGTCGCAGC....................................................................................................................... 25 1 16 0.06 1 0 1 0 0 0 0
.........................................................................................TCAGATAAGTAGCCCTCTTGTTC............................................................................................. 23 1 16 0.06 1 1 0 0 0 0 0
.......TATTAACTTATTCTATTTTGCAGGT............................................................................................................................................................................. 25 0 16 0.06 1 1 0 0 0 0 0
.............................................................TCTCCGTCGCTGGAATGGTCGCAGC....................................................................................................................... 25 1 16 0.06 1 0 1 0 0 0 0
..............................................................................................TAAGTAGCCCTCTTGTTGCCTC......................................................................................... 22 3 16 0.06 1 1 0 0 0 0 0
.....................................................................................CTCGTCAGATAAGTAGCCCTC................................................................................................... 21 0 17 0.06 1 1 0 0 0 0 0
.............................................................TCTCCGTCGCTGGAATGGTCGC.......................................................................................................................... 22 1 17 0.06 1 0 0 0 1 0 0
......................................................................................TCGTCAGATAAGTAGCCCTCT.................................................................................................. 21 0 17 0.06 1 1 0 0 0 0 0
............................................................TTCTTCGTCGCTGGAATGGTCG........................................................................................................................... 22 0 17 0.06 1 1 0 0 0 0 0
...............................................................TTCGTCGCTGGAGTGGTCGCA......................................................................................................................... 21 1 17 0.06 1 1 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCCC.......................................................................................................................... 22 1 17 0.06 1 1 0 0 0 0 0
.......................................................................TGGAATGGTCGCAGCTCGTCAGATA............................................................................................................. 25 0 17 0.06 1 0 0 1 0 0 0
..............................................................CTTCGTCGCTGGAATGGTC............................................................................................................................ 19 0 17 0.06 1 1 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGG.............................................................................................................................. 18 0 17 0.06 1 1 0 0 0 0 0
............................................................TTCTTCGTCGCTGGAATGGTCGCA......................................................................................................................... 24 0 17 0.06 1 1 0 0 0 0 0
.............................................................TCTTCGTCGCTGGAATGGTCTT.......................................................................................................................... 22 2 17 0.06 1 1 0 0 0 0 0
..............................................................CTTCGTCGCTGGAATGGTCG........................................................................................................................... 20 0 17 0.06 1 1 0 0 0 0 0
.............................................................TCTTCGTCGCTCGAATGGTCGCA......................................................................................................................... 23 1 17 0.06 1 1 0 0 0 0 0
...............................................................TTCGTCGCTGGAATGGTCGCA......................................................................................................................... 21 0 17 0.06 1 1 0 0 0 0 0
............................................................TTCTTCGTCGCTGGAATG............................................................................................................................... 18 0 18 0.06 1 1 0 0 0 0 0
..................................................................................................................GTCTAATGCTGGTAATGG......................................................................... 18 2 19 0.05 1 0 1 0 0 0 0
.............................................................TCTTCGTCGCTGGAATAAA............................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TTGAATTATAATTGAATAAGATAAAACGTCCATGCAACCACCGTCAGTAGCACCTGTAGGAAGAAGCAGCGACCTTACCAGCGTCGAGCAGTCTATTCATCGGGAGAACAACAGCAGATTGCGACTATTACCGAACACCAAGTAAAAATAAAGTCACACGCCGACGTATGTAACAGTAGCCACCTTACGCACGCAGGGCGCGTCG
******************************************************************.((.((..........(((((((((......(((((..((....))..))))).......))))....))))))).))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body
....................................................................................................CGGGAGAACAACAGCAGATTGC................................................................................... 22 0 14 8.07 113 76 20 14 3
..............................................GTAGCACCTGTAGGAAGAAGCAGCG...................................................................................................................................... 25 0 1 6.00 6 6 0 0 0
.................................................................................................CATCGGGAGAACAACAGCAGATTGC................................................................................... 25 0 14 5.29 74 63 8 0 3
................................................................................................................................................................CCGACGTATGTAACAGTAGCCACC..................... 24 0 1 5.00 5 4 1 0 0
.............................................AGTAGCACCTGTAGGAAGAAGCAGCG...................................................................................................................................... 26 0 1 5.00 5 5 0 0 0
.................................................................................................................................................................CGACGTATGTAACAGTAGCCACC..................... 23 0 1 5.00 5 3 2 0 0
...................................................................................................TCGGGAGAACAACAGCAGATTGC................................................................................... 23 0 14 3.36 47 40 5 0 2
.....................................................................................................GGGAGAACAACAGCAGATTGC................................................................................... 21 0 14 3.21 45 38 5 1 1
..................................................................................................ATCGGGAGAACAACAGCAGATTGC................................................................................... 24 0 14 3.07 43 43 0 0 0
.................................................GCACCTGTAGGAAGAAGCAGCG...................................................................................................................................... 22 0 1 2.00 2 2 0 0 0
................................................AGCACCTGTAGGAAGAAGCAGCG...................................................................................................................................... 23 0 1 2.00 2 2 0 0 0
...............................................TAGCACCTGTAGGAAGAAGCAGCG...................................................................................................................................... 24 0 1 2.00 2 2 0 0 0
............................................CAGTAGCACCTGTAGGAAGAAGCAGCG...................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
......................................................................................................GGAGAACAACAGCAGATTGC................................................................................... 20 0 14 1.29 18 14 3 1 0
.................................................................................................................................................................CGACGTATGTAACAGTAGCCACCTT................... 25 0 1 1.00 1 0 0 1 0
...............................................................................................................................................................GCCGACGTATGTAACAGTAGCCACC..................... 25 0 1 1.00 1 1 0 0 0
......................................................................................................................................................TAGTCACACGCCGACGTATGTAACAG............................. 26 1 1 1.00 1 1 0 0 0
.............................................TGTAGCACCTGTAGGAAGAAGCAGCG...................................................................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................................................................................................................................GACGTATGTAACAGTAGCCACC..................... 22 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................ACGTATGTAACAGTAGCCACCTTA.................. 24 0 1 1.00 1 1 0 0 0
....................................................................................................CGGGAGAACAACAGCAGATTG.................................................................................... 21 0 14 0.79 11 11 0 0 0
....................................................................................................CGGGAGAACAACAGCAGATTTC................................................................................... 22 1 14 0.50 7 1 6 0 0
..................................................................................................TTCGGGAGAACAACAGCAGATTGC................................................................................... 24 1 14 0.50 7 6 1 0 0
...............................................................................................TTCATCGGGAGAACAACAGCAGAT...................................................................................... 24 0 14 0.29 4 4 0 0 0
................................................................................................TCATCGGGAGAACAACAGCAGAT...................................................................................... 23 0 14 0.29 4 3 0 0 1
.....TTATAATTGAATAAGATAAAACGTCCA............................................................................................................................................................................. 27 0 16 0.25 4 4 0 0 0
.................................................................................................CATCGGGAGAACAACAGCAGATTTC................................................................................... 25 1 14 0.21 3 0 3 0 0
.................................................................................................CATCGGGAGAACAACAGCAGAT...................................................................................... 22 0 14 0.21 3 3 0 0 0
.................................................................................................CATCGGGAGAACAACAGCAGATTG.................................................................................... 24 0 14 0.21 3 3 0 0 0
.........................................................................................AGTCTATTCATCGGGAGAACAACAGCA......................................................................................... 27 0 14 0.21 3 3 0 0 0
..................................................................................................ATCGGGAGAACAACAGCAGATTG.................................................................................... 23 0 14 0.21 3 3 0 0 0
....................................................................GCGACCTTACCAGCGTCGAGCAGTCT............................................................................................................... 26 0 16 0.19 3 3 0 0 0
......TATAATTGAATAAGATAAAACGTCCA............................................................................................................................................................................. 26 0 16 0.19 3 3 0 0 0
....................................................................................................CGGGAGAACAACAGCAGATTGCGACT............................................................................... 26 0 14 0.14 2 2 0 0 0
..............................................................................................ATTCATCGGGAGAACAACAGCAGAT...................................................................................... 25 0 14 0.14 2 2 0 0 0
...................................................................................................TCGGGAGAACAACAGCAGATTG.................................................................................... 22 0 14 0.14 2 2 0 0 0
....................................................................................................CGGTAGAACAACAGCAGATTGC................................................................................... 22 1 14 0.14 2 0 2 0 0
.....................................................................................................GGGAGAACAACAGCAGATTG.................................................................................... 20 0 14 0.14 2 1 1 0 0
...................................................................................................TCGGGAGAACAACAGCAGATTTC................................................................................... 23 1 14 0.14 2 0 2 0 0
.....................................................................................................GGGAGAACAACAGCAGATTGCGA................................................................................. 23 0 14 0.14 2 2 0 0 0
.................................................................................................AATCGGGAGAACAACAGCAGATTGC................................................................................... 25 1 14 0.14 2 2 0 0 0
..............................................................................................TTTCATCGGGAGAACAACAGCAGAT...................................................................................... 25 1 14 0.14 2 2 0 0 0
................................................................................................TCATCGGGAGAACAACAGCAGATTGC................................................................................... 26 0 14 0.14 2 2 0 0 0
...................................................ACCTGTAGGAAGAAGCAGCG...................................................................................................................................... 20 0 14 0.14 2 1 1 0 0
...................................................................................................TCGGGAGAACAACAGCAGATT..................................................................................... 21 0 14 0.14 2 1 1 0 0
.................................................................................................CATCGGGAGAACAACAGCAGATCGC................................................................................... 25 1 14 0.14 2 0 2 0 0
....................................................................................................CGGGAGAACACCAGCAGATTGC................................................................................... 22 1 14 0.14 2 1 0 1 0
..........................................................GGAAGAAGCAGCGACCTTACCAGCGT......................................................................................................................... 26 0 16 0.13 2 1 0 0 1
.....CTATAATTGAATAAGATAAAACGTCCA............................................................................................................................................................................. 27 1 16 0.13 2 2 0 0 0
........TAATTGAATAAGATAAAACGTCCA............................................................................................................................................................................. 24 0 16 0.13 2 2 0 0 0
........................................................................CCTTACCAGCGTCGAGCAGTCTATT............................................................................................................ 25 0 17 0.12 2 2 0 0 0
.........................................................................CTTACCAGCGTCGAGCAGTCT............................................................................................................... 21 0 17 0.12 2 2 0 0 0
..................................................................................................ATCTGGAGAACAACAGCAGATTGC................................................................................... 24 1 14 0.07 1 1 0 0 0
...................................................................................................CCGGGAGAACAACAGCAGATCGC................................................................................... 23 2 14 0.07 1 0 1 0 0
....................................................................................................CAGGAGAACAACAGCAGATTGCGACTAT............................................................................. 28 1 14 0.07 1 0 1 0 0
....................................................................................................CAGGAGAACAACAGCAGATTGC................................................................................... 22 1 14 0.07 1 0 1 0 0
.......................................................GTAGGAAGAAGCAGCGACCTTA................................................................................................................................ 22 0 14 0.07 1 1 0 0 0
.................................................................................................TTTCGGGAGAACAACAGCAGATTGC................................................................................... 25 2 14 0.07 1 1 0 0 0
....................................................................................................TGGGAGAACAACAGCAGATTGT................................................................................... 22 2 14 0.07 1 0 0 1 0
......................................................................................................AGAGAACAACAGCAGATTG.................................................................................... 19 1 14 0.07 1 1 0 0 0
................................................................................................TCATCGGGAGAACAACAGCAGA....................................................................................... 22 0 14 0.07 1 0 1 0 0
..................................................................................................ATCGGGAGAACAACAGCAGAT...................................................................................... 21 0 14 0.07 1 1 0 0 0
.................................................................................................TATCGGGAGAACAACAGCAGATTGC................................................................................... 25 1 14 0.07 1 1 0 0 0
.................................................................................................CATCGGGAGAACAACGGCAGATTG.................................................................................... 24 1 14 0.07 1 1 0 0 0
...........................................................................................TCTATTCATCGGGAGAACAACAGCA......................................................................................... 25 0 14 0.07 1 0 1 0 0
....................................................................................................CGGGAGAACAACAGCAGATCTC................................................................................... 22 2 14 0.07 1 0 1 0 0
...................................................................................................TCGGGAGAACAACAGCAGA....................................................................................... 19 0 14 0.07 1 1 0 0 0
.......................................................................................................GAGAACAACAGCAGATTGCGACTA.............................................................................. 24 0 14 0.07 1 0 0 0 1
..............................................................................................ATTCATCGGGAGAACAACAGCAGATTGC................................................................................... 28 0 14 0.07 1 1 0 0 0
..................................................................................................................CAGATTGCGACTATTACCGAACACC.................................................................. 25 0 14 0.07 1 1 0 0 0
..........................................................................................GTCTATTCATCGGGAGAACAACAGCA......................................................................................... 26 0 14 0.07 1 0 0 0 1
.................................................................................................TTTCGGGAGAACAACAGCAGATTG.................................................................................... 24 2 14 0.07 1 1 0 0 0
....................................................................................................TGGGAGAACAACAGCAGATTGC................................................................................... 22 1 14 0.07 1 1 0 0 0
...................................................................................................CCGGGAGAACAACAGCAGATTGC................................................................................... 23 1 14 0.07 1 0 1 0 0
...................................................................................................CCGGGAGAACAACAGCAGAT...................................................................................... 20 1 14 0.07 1 0 1 0 0
...............................................................................................ATTATCGGGAGAACAACAGCAGATTGC................................................................................... 27 2 14 0.07 1 1 0 0 0
................................................................................................CTATCGGGAGAACAACAGCAGATTGC................................................................................... 26 2 14 0.07 1 0 1 0 0
.................................................................................................ATTCGGGAGAACAACAGCAGATTGC................................................................................... 25 2 14 0.07 1 1 0 0 0
..............................................................................................CCTCATCGGGAGAACAACAGCAGATTGC................................................................................... 28 2 14 0.07 1 1 0 0 0
.............................................................................................TATTCATCGGGAGAACAACAGCAGAT...................................................................................... 26 0 14 0.07 1 1 0 0 0
..................................................................................................ATCGGGAGAACAACAGCAGATTTC................................................................................... 24 1 14 0.07 1 0 1 0 0
............................................................................................CTATTCATCGGGAGAACAACAGCAGAT...................................................................................... 27 0 14 0.07 1 1 0 0 0
............................................................................................CTATTCATCGGGAGAACAACAGCA......................................................................................... 24 0 14 0.07 1 0 0 0 1
.................................................................................................CATCCGGAGAACAACAGCAGATTGC................................................................................... 25 1 14 0.07 1 1 0 0 0
....................................................................................................CGGGAGAACAGCAGCAGATTGC................................................................................... 22 1 14 0.07 1 1 0 0 0
......................................................................................................GGAGAACAACAGCAGATTG.................................................................................... 19 0 14 0.07 1 1 0 0 0
.................................................................................................CATCGGGAGAACAACAGCAGATTGCG.................................................................................. 26 0 14 0.07 1 1 0 0 0
................................................................................................ACATCGGGAGAACAACAGCAGATTGC................................................................................... 26 1 14 0.07 1 1 0 0 0
...................................................................................................CCGGGAGAACAACAGCAGAGTTC................................................................................... 23 3 14 0.07 1 0 1 0 0
...............................................................................................TTCATCGGGAGAACAACAGCAGATTGC................................................................................... 27 0 14 0.07 1 1 0 0 0
................................................................................................ATATCGGGAGAACAACAGCAGATTGC................................................................................... 26 2 14 0.07 1 1 0 0 0
................................................................................................TCATCGGGAGAACAACAGCAGGT...................................................................................... 23 1 14 0.07 1 0 1 0 0
..................................................................................................CTCGGGAGAACAACAGCAGATTGC................................................................................... 24 1 14 0.07 1 1 0 0 0
....................................................................................................CGGGAGAACAACAGCAGATTGCGA................................................................................. 24 0 14 0.07 1 1 0 0 0
...............................................................................................TTTATCGGGAGAACAACAGCAGAT...................................................................................... 24 1 14 0.07 1 1 0 0 0
.....................................................CTGTAGGAAGAAGCAGCGACCCTA................................................................................................................................ 24 1 14 0.07 1 0 1 0 0
................................................................................................CCATCGGGAGAACCACAGCAGATCGC................................................................................... 26 3 14 0.07 1 0 1 0 0
.................................................................................................CATCGGGAGAACAAGAGCAGATTGC................................................................................... 25 1 14 0.07 1 1 0 0 0
...................................................................................................AAAGGAGAACAACAGCAGATTGC................................................................................... 23 3 14 0.07 1 1 0 0 0
.......................................................................................................GAGAACAACAGCAGATTGC................................................................................... 19 0 14 0.07 1 1 0 0 0
....................................................................................................CGGGAGACCCACAGCAGATTGC................................................................................... 22 2 15 0.07 1 0 1 0 0
....................................................................................................GGGGAGATCAACAGCAGATTGC................................................................................... 22 2 15 0.07 1 0 0 1 0
............TGAATAAGATAAAACGTCCATG........................................................................................................................................................................... 22 0 15 0.07 1 1 0 0 0
..................................................................................................................CAGATTGCGACTATTCCCGAACACCAA................................................................ 27 1 15 0.07 1 1 0 0 0
.....................................................................................GAGCAGTCTATTCATCGGGAGAACAA.............................................................................................. 26 0 16 0.06 1 1 0 0 0
.....TTATAATTGAATAAGATAAAACGTCCAT............................................................................................................................................................................ 28 0 16 0.06 1 1 0 0 0
......................................................................GACCTTACCAGCGTCGAGCAGTCTATT............................................................................................................ 27 0 16 0.06 1 1 0 0 0
.........................................................................................AGTCTATTCATCGGGAGAACAACAG........................................................................................... 25 0 16 0.06 1 1 0 0 0
...................................................................AGCGACCTTACCAGCGTCGAGCAGTCT............................................................................................................... 27 0 16 0.06 1 1 0 0 0
.....................................................................................................................................................AAAGTCTCACGCGGACGTAT.................................... 20 2 16 0.06 1 1 0 0 0
...................................................................................................................AGATTGCGACTATTACCGAACACCAAG............................................................... 27 0 16 0.06 1 0 0 0 1
..................................................................CAGCGACCTTACCAGCGTCGAGC.................................................................................................................... 23 0 16 0.06 1 1 0 0 0
.......................................................................................................................TGCGACTATTACCGAACACCAAG............................................................... 23 0 16 0.06 1 1 0 0 0
..............................................................................................................................................CAAAAAAAAAGTCACACGCCGACGTA..................................... 26 2 16 0.06 1 1 0 0 0
..........................................................GGAAGAAGCAGCGACCTTACCAGC........................................................................................................................... 24 0 16 0.06 1 1 0 0 0
.......................................................................................GCAGTCTATTCATCGGGAGAACAAC............................................................................................. 25 0 16 0.06 1 1 0 0 0
.......................................................................................GCAGTCTATTCATCGGGAGAACAACAG........................................................................................... 27 0 16 0.06 1 1 0 0 0
.......ATAATTGAATAAGATAAAACGTCCA............................................................................................................................................................................. 25 0 16 0.06 1 1 0 0 0
...........TTGGATAAGATAAAACGTCCGT............................................................................................................................................................................ 22 2 16 0.06 1 1 0 0 0
.....................................................................................GAGCAGTCTATTCATCGGGAGA.................................................................................................. 22 0 17 0.06 1 1 0 0 0
........................................................................CCTTACCAGCGTCGAGCAG.................................................................................................................. 19 0 17 0.06 1 0 0 0 1
.........................................................................CTTACCAGCGTCGAGCAGT................................................................................................................. 19 0 17 0.06 1 1 0 0 0
.......................................................................ACCTTACCAGCGTCGAGCAGTCT............................................................................................................... 23 0 17 0.06 1 1 0 0 0
..................................................................................GTCGAGCAGTCTATTCATCGGGAGAC................................................................................................. 26 1 17 0.06 1 0 0 0 1
.........................................................................TTTACCAGCGTCGAGCAGTCT............................................................................................................... 21 1 17 0.06 1 1 0 0 0
............................................................................ACCAGCGTCGAGCAGTCTATTCATCG....................................................................................................... 26 0 17 0.06 1 1 0 0 0
............................................................................ACCAGCGTCGAGCAGTCTATTCA.......................................................................................................... 23 0 17 0.06 1 1 0 0 0
...........................................................................TACCAGCGTCGAGCAGTCTATTCA.......................................................................................................... 24 0 17 0.06 1 1 0 0 0
.............................................................................CCAGCGTCGAGCAGTCTATTCATC........................................................................................................ 24 0 17 0.06 1 1 0 0 0
................................................................................GCGTCGAGCAGTCTATTCAT......................................................................................................... 20 0 17 0.06 1 0 0 0 1
.........................................................................CTTACCAGCGTCGAGCAGTCTATTCAT......................................................................................................... 27 0 17 0.06 1 1 0 0 0
.........................................................................CTTACCAGCGTCGAGCAGTCTATT............................................................................................................ 24 0 17 0.06 1 1 0 0 0
.......................................................................ACCTTACCAGCGTCGAGCA................................................................................................................... 19 0 17 0.06 1 1 0 0 0
.............................................................................CCAGCGTCGAGCAGTCTATTC........................................................................................................... 21 0 17 0.06 1 1 0 0 0
.......................................................................ACCTTACCAGCGTCGAGCAGTC................................................................................................................ 22 0 17 0.06 1 1 0 0 0
.TGAATTATAATTGAATAAGATAA..................................................................................................................................................................................... 23 0 17 0.06 1 1 0 0 0
................................................AGCACCTGGAGGAAGTAT........................................................................................................................................... 18 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:343800-344004 - dmo_1283 AACTTAATAT----------------TAACTTATTCTATTTTGCAG-----------------------------------GTACGTTGGTGGCAGTCATCGTGGACATCCTTCTTCGTCGCTGGAATGGTCGCAGCTCGTCAGATAAGTAGCCCTCTTGTTGTCGTCTAACGCTGATAATGGCTTGTGGTTCATTTTTATTTCAGTGTGCGGCTGCATACATTGTCATCGGTGGAATGCGTGCGTCCCGCGCAGC
droVir3 scaffold_12875:12893573-12893601 + TTGTCGTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGCGCTAATAAAAGC-----------------------------TT-----------------------------------------
droGri2 scaffold_15081:597685-597744 - AGAAGCCGAC----------------TTGCTTG-------------------------------------------------------------------------------------------------------------------------------CGCCACGCCAACGCTGACGACGACTTGCGTCGCATTTTTAT------------TT-----------------------------------------
droWil2 scf2_1100000004521:5240461-5240504 - CCTTTATTGT----------------TTATTTCTTTCAATATGCAG-----------------------------------GTACGCTCG-----------------------------------------------------------------------------------------------------------CGA-------------CA-----------------------------------------
dp5 3:18246669-18246727 - GATAA--GCT----------------TTGCT-----------------------------------------------------------------------------------------------------------------------------CTTGTTGTGTTCTTGTGATAATTAAAAGTTGTCGTTCATTCTTA-------------TT-----------------------------------------
droPer2 scaffold_34:189238-189296 - GATAA--GCT----------------TTGCT-----------------------------------------------------------------------------------------------------------------------------CTTGTTGTGTTCTTGTGATAATTAAAAGTTGTCGTTCATTCTTA-------------TT-----------------------------------------
droAna3 scaffold_12902:259689-259727 + ACATTTGTTT----------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTATTTTTATTTCAATGTATGGCT-----------------------------------------
droBip1 scf7180000395498:216175-216200 - TATTTAATAT----------------TAACTTGTATTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------
droKik1 scf7180000302610:1750136-1750161 + AAATTAAACT----------------TAACTTAATATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------
droFic1 scf7180000453253:95752-95795 + AAACTAATGT----------------TAT-TTAA--CATTTTACAG-------GT--------------------------G-ATGTTTTT---------------------------------------------------------------------------------------------------------GGAA-------------GT-----------------------------------------
droEle1 scf7180000491238:941789-941825 + GGCAG--TCG----------------CGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGCCTCCTCGTCGCTAGAAT-----------------------------------------
droRho1 scf7180000774013:5052-5092 + AAAACAGTAC----------------TTATTTATTCTTTTTTCCAT-----------------------------------GTATTTTGT---------------------------------------------------------------------------------------------------------------------------TG-----------------------------------------
droBia1 scf7180000302422:2219663-2219709 + ATGCTGACTC----------------TGGCTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------GCCGAGTTTTTCTTTCAGTCGCCGGCTGC---------------------------------------
droTak1 scf7180000415254:386796-386892 - AATTTAATTT----------------TTGTTTCTTAAATA------ATAATAGGTTCCCTATTATTTTCATATACTTACATCCTCGTTG--------------------------------GTCGTCTGATCGCTGGTCGTCAGAT----------------------------------------------------------------AGGTA-----------------------------------------
droEug1 scf7180000408176:750924-750950 + AACTTAATTT----------------TAAGACTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTA-------------CA-----------------------------------------
dm3 chr3R:14084793-14084854 + AAATATAAACCAATTTGCTCTATAAGACATTTTACTAAAA------GTA--------------------------------------------------------------------------------------------------------------------------------------ATGAGCATCCTTTTATG-------------CC-----------------------------------------
droSec2 scaffold_1504:559-570 - ACTTTAAGAC----------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr2h_random_003:294993-295053 + GCCCGCTTGT----------------T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAACTGTTTTTGTTGCCATTTTATTTTGTTGTGCGGCT-----------------------------------------
droEre2 scaffold_4770:3105406-3105463 + AATTTAATAT----------------CCTCGCATATCCTTTTGCAC-----------------------------------GCAGCCAGCTCGCATGCTCCGTGGC---------------------------------------------------------------------------------------------C-------------AT-----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AACTTAATAT----------------TAACTTATTCTATTTTGCAG-----------------------------------GTACGTTGGTGGCAGTCATCGTGGACATCCTTCTTCGTCGCTGGAATGGTCGCAGCTCGTCAGATAAGTAGCCCTCTTGTTGTCGTCTAACGCTGATAATGGCTTGTGGTTCATTTTTATTTCAGTGTGCGGCTGCATACATTGTCATCGGTGGAATGCGTGCGTCCCGCGCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................TTATTCTATTTTGCAG-----------------------------------GTACGTTGG......................................................................................................................................................................25113.00131200001
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGG..................................................................271412.9318118000010
................................................................................................................TCTTCGTCGCTGGAATGGTCGCAGC.......................................................................................................................25169.75156143200101
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCCGCGC...2836.33191800010
.........................................TGCAG-----------------------------------GTACGTTGGTGGCAGTCATCG..........................................................................................................................................................2615.005500000
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCC.......2434.3313600061
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCCG......2534.33131100020
......................................TTTTGCAG-----------------------------------GTACGTTGGTGGCAGTCA.............................................................................................................................................................2614.004400000
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCCGC.....2633.67111100000
................................................................................................................TCTTCGTCGCTGGAATGGTCGCAG........................................................................................................................24163.44555110003
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCC........2333.3310500050
......................................TTTTGCAG-----------------------------------GTACGTTGGTGGCAGTC..............................................................................................................................................................2513.003300000
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCCGCG....2732.337500002
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTGCGTC.........2232.006400020
.........................................TGCAG-----------------------------------GTACGTTGGTGGCAGTCATCGTG........................................................................................................................................................2812.002200000
.........................................TGCAG-----------------------------------GTACGTTGGTGGCAGTC..............................................................................................................................................................2212.002101000
..............................................................................................................................................................................................TTCATTTTTATTTCAGTGTGCGGC..........................................2412.002200000
..............................TTATTCTATTTTGCAG-----------------------------------GTACGTTG.......................................................................................................................................................................2412.002200000
......................................TTTTGCAG-----------------------------------GTACGTTGGTGGCAGT...............................................................................................................................................................2412.002200000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTGTG...................................................................26141.93272700000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTG.....................................................................24141.79252500000
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTGCGT..........2131.334400000
................................................................................................................TCTTCGTCGCTGGAATGGTCGCAGCTCG....................................................................................................................28161.19191900000
................................................................................................................TCTTCGTCGCTGGAATGGTCGCAGCT......................................................................................................................26161.13181600020
................................................................................................................TCTTCGTCGCTGGAATGGTCGC..........................................................................................................................22171.12191300042
....................................................................................................................................................................CGTCTAACGCTGATAATGGCTTGTGG..................................................................26141.07151500000
...............................TATTCTATTTTGCAG-----------------------------------GTACGTTGG......................................................................................................................................................................2411.001100000
..........................................GCAG-----------------------------------GTACGTTGGTGGCAGTCAT............................................................................................................................................................2311.001100000
.........T----------------TAACTTATTCTATTTTGCAG-----------------------------------GTACGT.........................................................................................................................................................................2711.001100000
......................................................................................TTGGTGGCAGTCATCGTGGACATCCT................................................................................................................................................2611.001100000
..............................................................................................................................................................................................TTCATTTTTATTTCAGTGTGCGGTC.........................................2511.001000001
..............................................................................................................................................................................................TTCATTTTTATTTCAGTGTGCGGCT.........................................2511.001010000
........................................................................................................................................................................................TTGTGGTTCATTTTTATTTCAGTGT...............................................2511.001100000
..............................................................................................................................................................................................TTCATTTTTATTTCAGTGTGCGGCTGCA......................................2811.001100000
......................................TTTTGCAG-----------------------------------GTACGTTGGTGG...................................................................................................................................................................2011.001010000
.........................................TGCAG-----------------------------------GTACGTTGGTGGCAGTCAT............................................................................................................................................................2411.001100000
......................................TTTTGCAG-----------------------------------GTACGTTGGTGGCAGTCATC...........................................................................................................................................................2811.001000001
......................................TTTTGCAG-----------------------------------GTACGTTGGTGGC..................................................................................................................................................................2111.001100000
.................................................................................................CATCGTGGACATCCTTCTTCGTCGC......................................................................................................................................2511.001100000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTGT....................................................................25140.93131300000
.................................................................................................................CTTCGTCGCTGGAATGGTCGCAGC.......................................................................................................................24160.88141400000
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTGCGTCCCGA.....2630.672000020
..................................................................................................................................................................................................................................CATCGGTGGAATGCGTGCGTCC........2230.672200000
................................................................................................................TCTTCGTCGCTGGAATGGTCGCA.........................................................................................................................23170.65111100000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTT......................................................................23140.649900000
................................................................................................................TCTTCGTCGCTGGAATGGTCG...........................................................................................................................21170.5910810001
................................................................................................................TCTTCGTCGCTGGAATGGTCGCAGCTC.....................................................................................................................27160.569800001
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGGT.................................................................28140.507700000
................................................................................................................................................................TTGTCGTCTAACGCTGATAATGGCTTG.....................................................................27140.507700000
............................................................................................................................................TCAGATAAGTAGCCCTCTTGTTG.............................................................................................23160.447700000
.............................................................................................................................................................TTGTTGTCGTCTAACGCTGATAATGG.........................................................................26130.385500000
.............................................................................................................................................................TTGTTGTCGTCTAACGCTGATAATG..........................................................................25130.385500000
................................................................................................................................................................TTGTCGTCTAACGCTGATAATGGC........................................................................24140.365400001
..................................................................................................................................................................................................................................CATCGGTGGAATGCGTGCGTCCCG......2430.331100000
..................................................................................................................................................................................................................................CATCGGTGGAATGCGTGCGTCCCGC.....2530.331100000
..................................................................................................................................................................................................................................CATCGGTGGAATGCGTGCGTCCC.......2330.331100000
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTGCG...........2030.331100000
..................................................................................................................................................................................................................................CATCGGTGGAATGCGTGCGTCCCGCGC...2730.331100000
.................................................................................................................................................................................................................................TCATCGGTGGAATGCGTG.............1830.331100000
.............................................................................................................................................................TTGTTGTCGTCTAACGCTGATAATGGC........................................................................27130.314400000
................................................................................................................TCTTCGTCGCTGGAATGGT.............................................................................................................................19170.295110021
.................................................................................................................CTTCGTCGCTGGAATGGTCGCAG........................................................................................................................23160.254400000
................................................................................................................TCTTCGTCGCTGGAATGGTC............................................................................................................................20170.244210010
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCT.......................................................................22140.213300000
................................................................................................................................................................TTGTCGTCTAACGCTGATAATGGCT.......................................................................25140.213200010
.....................................................................................................................................................................GTCTAACGCTGATAATGGCTTGTGG..................................................................25140.213300000
......................................................................................................TGGACATCCTTCTTCGTCGCTGGAATGG..............................................................................................................................28140.213300000
...TTAATAT----------------TAACTTATTCTATTTTGCAG-----------------------------------G..............................................................................................................................................................................28160.193300000
.................................................................................................................CTTCGTCGCTGGAATGGTCGCAGCT......................................................................................................................25160.193300000
.................................................................................................................CTTCGTCGCTGGAATGGTCGCA.........................................................................................................................22170.183300000
..............................................................................................................................ATGGTCGCAGCTCGTCAG................................................................................................................18170.183001200
....................................................................................................................................................................CGTCTAACGCTGATAATGGCTTGT....................................................................24140.142200000
......................................................................................................TGGACATCCTTCTTCGTCGCTGGAAT................................................................................................................................26140.142200000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCC.......................................................................22140.142000020
....................................................................................................................................................................CGTCTAACGCTGATAATGGCTTG.....................................................................23140.142200000
....................................................................................................................................................................CGTCTAACGCTGATAATGGCTTGTG...................................................................25140.142200000
.........................................................................................................................................TCGTCAGATAAGTAGCCCTCTTGTTG.............................................................................................26160.132200000
.................................................................................................................CTTCGTCGCTGGAATGGTCGCAGCTC.....................................................................................................................26160.132200000
.........................................................................................................................................TCGTCAGATAAGTAGCCCTCTTG................................................................................................23160.132200000
..................................................................................................................TTCGTCGCTGGAATGGTCGCAGCTCG....................................................................................................................26160.132200000
............................................................................................................TCCTTCTTCGTCGCTGGAATGGTCG...........................................................................................................................25160.132200000
..........................................................................................................................TGGAATGGTCGCAGCTCGTCAG................................................................................................................22170.122100001
...........................................................................................................................................................TCTTGTTGTCGTCTAACGCTGATAATGGC........................................................................29130.081100000
...........................................................................................................................................................TCTTGTTGTCGTCTAACGCTGATAATG..........................................................................27130.081100000
..............................................................................................................................................................TGTTGTCGTCTAACGCTGATAATG..........................................................................24130.081100000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGGC.................................................................28140.071100000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGT..................................................................27140.071100000
.................................................................................................................................................TAAGTAGCCCTCTTGTTGTCGTCTA......................................................................................25140.071100000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGA..................................................................27140.071100000
................................................................................................................................................ATAAGTAGCCCTCTTGTTGTCGTCTAAC....................................................................................28140.071100000
............................................................................................................................................................CTTGTTGTCGTCTAACGCTGATAA............................................................................24140.071100000
.................................................................................................................................................................TGTCGTCTAACGCTGATAATGGC........................................................................23140.071100000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGCC.................................................................28140.071100000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTGA....................................................................25140.071100000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGC........................................................................21140.071100000
.................................................................................................................................................TAAGTAGCCCTCTTGTTGTCGTC........................................................................................23140.071100000
........................................................................................................................................................CCCTCTTGTTGTCGTCTAACGCTGA...............................................................................25140.071010000
.................................................................................................................................................................TGTCGTCTAACGCTGATAATGGCT.......................................................................24140.071100000
......................................................................................................TGGACATCCTTCTTCGTCGCTGGAA.................................................................................................................................25140.071100000
.......................................................................................................GGACATCCTTCTTCGTCGCTGGAAT................................................................................................................................25140.071100000
................................................................................................................................................................TTGTCGTCTAACGCTGATAATGGCTTGTG...................................................................29140.071100000
........................................................................................................................................................CCCTCTTGTTGTCGTCTAACGCTGAT..............................................................................26140.071100000
................................................................................................................................................................TTGTCGTCTAACGCTGATAATGGCTTT.....................................................................27140.071100000
..................................................................................................................................................................GTCGTCTAACGCTGATAATGGCTTG.....................................................................25140.071100000
..................................................................................................................................................................GTCGTCTAACGCTGATAATGGCTTGT....................................................................26140.071100000
....................................................................................................................................................................CGTCTAACGCTGATAATGGCTT......................................................................22140.071100000
...................................................................................................................................................................TCGTCTAACGCTGATAATGGCTTGTGGTT................................................................29140.071100000
...........................................................................................................................................................TCTTGTTGTCGTCTAACGCTGATA.............................................................................24140.071100000
..............................................................................................................CTTCTTCGTCGCTGGAATGGTCGCAG........................................................................................................................26160.061100000
................................................................................................................TCTTCGTCGCTGGAATGGTCGCAA........................................................................................................................24160.061100000
......................................................................................................................TCGCTGGAATGGTCGCAGCTCGTCAG................................................................................................................26160.061100000
..CTTAATAT----------------TAACTTATTCTATTTTGC....................................................................................................................................................................................................................26160.061100000
............................................................................................................TCCTTCTTCGTCGCTGGAATGGTC............................................................................................................................24160.061100000
.........................................................................................................................................TCGTCAGATAAGTAGCCCTCTTGT...............................................................................................24160.061000010
...TTAATAT----------------TAACTTATTCTATTTTGCAG-----------------------------------...............................................................................................................................................................................27160.061100000
..........................................................................................................................................CGTCAGATAAGTAGCCCTCTTGTTG.............................................................................................25160.061100000
.......................................................................................................................................GCTCGTCAGATAAGTAGCCCTCTTG................................................................................................25160.061100000
..........................TAACTTATTCTATTTTGCAG-----------------------------------G..............................................................................................................................................................................21160.061100000
.....................................................................................................................GTCGCTGGAATGGTCGCAGCTCGTCAG................................................................................................................27160.061000001
..............................TTATTCTATTTTGCAG-----------------------------------GTA............................................................................................................................................................................19160.061100000
........................................................................................................................GCTGGAATGGTCGCAGCTCGTCAG................................................................................................................24160.061000100
...................................................................................................................TCGTCGCTGGAATGGTCGCAG........................................................................................................................21160.061100000
..............................TTATTCTATTTTGCAG-----------------------------------GT.............................................................................................................................................................................18160.061100000
...........................AACTTATTCTATTTTGCAG-----------------------------------GT.............................................................................................................................................................................21160.061100000
............................................................................................................................................TCAGATAAGTAGCCCTCTTGTC..............................................................................................22160.061000010
....TAATAT----------------TAACTTATTCTATTTTGCAG-----------------------------------G..............................................................................................................................................................................27160.061100000
.....................................................................................................................GTCGCTGGAATGGTCGCAGCTCGTCA.................................................................................................................26160.061000001
................................................................................................................TCTTCGTCGCTGGAATGGTCGCAGCTCGT...................................................................................................................29160.061100000
.................................................................................................................CTTCGTCGCTGGAATGGTCGCAGCTCG....................................................................................................................27160.061100000
............................................................................................................................................TCAGATAAGTAGCCCTCTTGTTC.............................................................................................23160.061100000
.......TAT----------------TAACTTATTCTATTTTGCAG-----------------------------------GT.............................................................................................................................................................................25160.061100000
........................................................................................................................................CTCGTCAGATAAGTAGCCCTC...................................................................................................21170.061100000
.........................................................................................................................................TCGTCAGATAAGTAGCCCTCT..................................................................................................21170.061100000
...............................................................................................................TTCTTCGTCGCTGGAATGGTCG...........................................................................................................................22170.061100000
..........................................................................................................................TGGAATGGTCGCAGCTCGTCAGATA.............................................................................................................25170.061000001
.................................................................................................................CTTCGTCGCTGGAATGGTC............................................................................................................................19170.061100000
................................................................................................................TCTTCGTCGCTGGAATGG..............................................................................................................................18170.061100000
...............................................................................................................TTCTTCGTCGCTGGAATGGTCGCA.........................................................................................................................24170.061100000
................................................................................................................TCTTCGTCGCTGGAATGGTCTT..........................................................................................................................22170.061100000
.................................................................................................................CTTCGTCGCTGGAATGGTCG...........................................................................................................................20170.061100000
..................................................................................................................TTCGTCGCTGGAATGGTCGCA.........................................................................................................................21170.061100000
...............................................................................................................TTCTTCGTCGCTGGAATG...............................................................................................................................18180.061100000
................................................................................................................TCTTCGTCGCTGGAATAAA.............................................................................................................................19200.051100000
droVir3
TTGTCGTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGCGCTAATAAAAGC-----------------------------TT-----------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
AGAAGCCGAC----------------TTGCTTG-------------------------------------------------------------------------------------------------------------------------------CGCCACGCCAACGCTGACGACGACTTGCGTCGCATTTTTAT------------TT-----------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CCTTTATTGT----------------TTATTTCTTTCAATATGCAG-----------------------------------GTACGCTCG-----------------------------------------------------------------------------------------------------------CGA-------------CA-----------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GATAA--GCT----------------TTGCT-----------------------------------------------------------------------------------------------------------------------------CTTGTTGTGTTCTTGTGATAATTAAAAGTTGTCGTTCATTCTTA-------------TT-----------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................GCT-----------------------------------------------------------------------------------------------------------------------------CTTGTTGTGTTCTTGTG...................................................................................2011.0010000001000
droPer2
GATAA--GCT----------------TTGCT-----------------------------------------------------------------------------------------------------------------------------CTTGTTGTGTTCTTGTGATAATTAAAAGTTGTCGTTCATTCTTA-------------TT-----------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................TTCTTGTGATAATTAAAAGTT......................................................................2111.001010000
droAna3
ACATTTGTTT----------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTATTTTTATTTCAATGTATGGCT-----------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATTTAATAT----------------TAACTTGTATTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAATTAAACT----------------TAACTTAATATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAACTAATGT----------------TAT-TTAA--CATTTTACAG-------GT--------------------------G-ATGTTTTT---------------------------------------------------------------------------------------------------------GGAA-------------GT-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGCAG--TCG----------------CGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGCCTCCTCGTCGCTAGAAT-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAAACAGTAC----------------TTATTTATTCTTTTTTCCAT-----------------------------------GTATTTTGT---------------------------------------------------------------------------------------------------------------------------TG-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATGCTGACTC----------------TGGCTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------GCCGAGTTTTTCTTTCAGTCGCCGGCTGC---------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AATTTAATTT----------------TTGTTTCTTAAATA------ATAATAGGTTCCCTATTATTTTCATATACTTACATCCTCGTTG--------------------------------GTCGTCTGATCGCTGGTCGTCAGAT----------------------------------------------------------------AGGTA-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AACTTAATTT----------------TAAGACTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTA-------------CA-----------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AAATATAAACCAATTTGCTCTATAAGACATTTTACTAAAA------GTA--------------------------------------------------------------------------------------------------------------------------------------ATGAGCATCCTTTTATG-------------CC-----------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........AATTTGCTCTATAAGACA...................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSec2
ACTTTAAGAC----------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GCCCGCTTGT----------------T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAACTGTTTTTGTTGCCATTTTATTTTGTTGTGCGGCT-----------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................TAACTGTTTTTGTTGCCATTTTATT......................................................25201.0020020000000000
.................................................................................................................................................................................TAACTGTTTTTGTTGCCATTTTATTT.....................................................26200.8517017000000000
...........................................................................................................................................................................CGTGGCTAACTGTTTTTGTTGCCATT...........................................................26170.53900000000009
...CGCTTGT----------------T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAACTGT........................................................................27170.41700000000007
...CGCTTGT----------------T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAACTG.........................................................................26170.18303000000000
..................................................................................................................................................................................AACTGTTTTTGTTGCCATTTTATTT.....................................................25200.15303000000000
.................................................................................................................................................................................TAACTGTTTTTGTTGCCATTTTATTTTG...................................................28200.15303000000000
..................................................................................................................................................................................AACTGTTTTTGTTGCCATTTTATTTTG...................................................27200.10202000000000
.................................................................................................................................................................................TAACTGTTTTTGTTGCCATTTTA........................................................23200.10202000000000
GCCCGCTTGT----------------T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAAC...........................................................................27160.06101000000000
.CCCGCTTGT----------------T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAAC...........................................................................26160.06101000000000
...............................TAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAACTGTTTTTGTTGC...............................................................25170.06101000000000
..........................T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAACTGTTTTTG...................................................................25170.06101000000000
..........................T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAACTGTTTTTGT..................................................................26170.06101000000000
..........................T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAACTGTTTTTGTT.................................................................27170.06101000000000
.................................T-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAACTGTTTTTGTTGCCA.............................................................25170.06101000000000
...CGCTTGT----------------T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAAC...........................................................................24170.06101000000000
......TTGT----------------T-GCTTAT-----------------------------------------------------------------------------------------------------------------------------------------CGTGGCTAACTGT........................................................................24170.06100100000000
.....................................................................................................................................................................................TGTTTTTGTTGCCATTTTAT.......................................................20200.05101000000000
...........................................................................................................................................................................................TGTTGCCATTTTATTTTGTTGTGCGGC..........................................27200.05101000000000
..................................................................................................................................................................................AACTGTTTTTGTTGCCATT...........................................................19200.05101000000000
..................................................................................................................................................................................AACTGTTTTTGTTGCCATTTTATT......................................................24200.05101000000000
.......................................................................................................................................................................................TTTTTGTTGCCATTTTATTTTGTTG................................................25200.05101000000000
droEre2
AATTTAATAT----------------CCTCGCATATCCTTTTGCAC-----------------------------------GCAGCCAGCTCGCATGCTCCGTGGC---------------------------------------------------------------------------------------------C-------------AT-----------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:07 AM