ID:

dmo_1280

 Coordinate:

scaffold_6498:333970-334035 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-8.5 -8.1 -7.9

Flybase annnotation

CDS [Dmoj\GI14068-cds]; exon [dmoj_GLEANR_14116:11]; exon [dmoj_GLEANR_14116:10]; CDS [Dmoj\GI14068-cds]; intron [Dmoj\GI14068-in]

No Repeatable elements found

mature
  1. scaffold_818:4754-4780 +
  2. scaffold_1858:1047-1073 +
  3. scaffold_2912:788-814 -
  4. scaffold_2939:229-255 -
  5. scaffold_4509:3677-3703 -
  6. scaffold_4728:4220-4246 +
  7. scaffold_5131:501-527 +
  8. scaffold_5565:998-1024 -
  9. scaffold_6415:452-478 -
  10. scaffold_6457:44213-44239 +
  11. dmo_1280  scaffold_6498:333985-334011 -
  12. dmo_1283  scaffold_6498:343866-343892 -
  13. scaffold_6640:2166-2192 +
  14. scaffold_6649:48033-48059 +
star

Sense Strand Reads

##################################################------------------------------------------------------------------##################################################
GTGGCAGTCATCATGGACATCCTTCTTCGTCGCTGGAATGGTCGCAGCTCGTCAGATAAGTAGCCCTCTTGTTGTCGTCTAACGCTGATAATGGCTTGTGGTTCGTTTTTTTTCAGTGTGCGGCTGCATACGTTGTCATCAGTGGAAAGCGTGCGTCCCGCGCAGC
**************************************************....(((....((((...((((((.(((...))).)))))).))))....))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
 V049
head
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGG................................................................. 27 0 14 12.93 181 180 1 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCGCAGC...................................................................................................................... 25 0 16 9.75 156 143 10 1 2 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCG...... 25 0 12 5.83 70 68 2 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGCGC... 28 0 12 5.50 66 59 6 0 1 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCC....... 24 0 12 4.75 57 38 15 3 1 0 0
.......................TCTTCGTCGCTGGAATGGTCGCAG....................................................................................................................... 24 0 16 3.44 55 51 0 3 1 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCC........ 23 0 12 2.42 29 17 8 2 2 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGCG.... 27 0 12 2.33 28 25 0 1 2 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGC..... 26 0 12 2.17 26 24 2 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTGTG.................................................................. 26 0 14 1.93 27 27 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTG.................................................................... 24 0 14 1.79 25 25 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTTTGG................................................................. 27 1 14 1.21 17 17 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCGCAGCTCG................................................................................................................... 28 0 16 1.19 19 19 0 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTC......... 22 0 12 1.17 14 7 7 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCGCAGCT..................................................................................................................... 26 0 16 1.13 18 16 2 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCGC......................................................................................................................... 22 0 17 1.12 19 13 4 2 0 0 0
...........................................................................CGTCTAACGCTGATAATGGCTTGTGG................................................................. 26 0 14 1.07 15 15 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTGT................................................................... 25 0 14 0.93 13 13 0 0 0 0 0
........................CTTCGTCGCTGGAATGGTCGCAGC...................................................................................................................... 24 0 16 0.88 14 14 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCGCA........................................................................................................................ 23 0 17 0.65 11 11 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTT..................................................................... 23 0 14 0.64 9 9 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCG.......................................................................................................................... 21 0 17 0.59 10 8 0 1 1 0 0
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCGCGC... 27 0 12 0.58 7 7 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCGCAGCTC.................................................................................................................... 27 0 16 0.56 9 8 0 1 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGGT................................................................ 28 0 14 0.50 7 7 0 0 0 0 0
.......................................................................TTGTCGTCTAACGCTGATAATGGCTTG.................................................................... 27 0 14 0.50 7 7 0 0 0 0 0
...................................................TCAGATAAGTAGCCCTCTTGTTG............................................................................................ 23 0 16 0.44 7 7 0 0 0 0 0
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCG...... 24 0 12 0.42 5 5 0 0 0 0 0
....................................................................TTGTTGTCGTCTAACGCTGATAATG......................................................................... 25 0 13 0.38 5 5 0 0 0 0 0
....................................................................TTGTTGTCGTCTAACGCTGATAATGG........................................................................ 26 0 13 0.38 5 5 0 0 0 0 0
.......................................................................TTGTCGTCTAACGCTGATAATGGC....................................................................... 24 0 14 0.36 5 4 0 1 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGCGA... 28 1 12 0.33 4 4 0 0 0 0 0
....................................................................TTGTTGTCGTCTAACGCTGATAATGGC....................................................................... 27 0 13 0.31 4 4 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGGT............................................................................................................................ 19 0 17 0.29 5 1 2 1 1 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGT..... 26 1 12 0.25 3 3 0 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGT.......... 21 0 12 0.25 3 3 0 0 0 0 0
........................CTTCGTCGCTGGAATGGTCGCAG....................................................................................................................... 23 0 16 0.25 4 4 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTC........................................................................................................................... 20 0 17 0.24 4 2 1 0 1 0 0
...............................................................................................TTGTGGTTCGTTTTTTTTCAGTGTG.............................................. 25 0 13 0.23 3 3 0 0 0 0 0
.....................................................................................................TTCGTTTTTTTTCAGTGTGCGGC.......................................... 23 0 13 0.23 3 1 2 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTTT................................................................... 25 1 14 0.21 3 2 1 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCT...................................................................... 22 0 14 0.21 3 3 0 0 0 0 0
.............TGGACATCCTTCTTCGTCGCTGGAATGG............................................................................................................................. 28 0 14 0.21 3 3 0 0 0 0 0
.......................................................................TTGTCGTCTAACGCTGATAATGGCT...................................................................... 25 0 14 0.21 3 2 1 0 0 0 0
............................................................................GTCTAACGCTGATAATGGCTTGTGG................................................................. 25 0 14 0.21 3 3 0 0 0 0 0
...........................................................................CGTCTAACGCTGATAATGGCTTTTGG................................................................. 26 1 14 0.21 3 3 0 0 0 0 0
........................CTTCGTCGCTGGAATGGTCGCAGCT..................................................................................................................... 25 0 16 0.19 3 3 0 0 0 0 0
........................CTTCGTCGCTGGAATGGTCGCA........................................................................................................................ 22 0 17 0.18 3 3 0 0 0 0 0
.....................................ATGGTCGCAGCTCGTCAG............................................................................................................... 18 0 17 0.18 3 0 0 0 0 2 1
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCGCG.... 26 0 12 0.17 2 2 0 0 0 0 0
..........................................................................................................................................TCAGTGGAAAGCGTGCGTCCCGCGC... 25 0 12 0.17 2 2 0 0 0 0 0
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCC....... 23 0 12 0.17 2 2 0 0 0 0 0
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCGC..... 25 0 12 0.17 2 2 0 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCC...... 25 1 12 0.17 2 1 1 0 0 0 0
.......................................................................................................................................TCTTCAGTGGAAAGCGTGCGTCCCGC..... 26 1 12 0.17 2 2 0 0 0 0 0
...............................................................................................TTGTGGTTCGTTTTTTTTCAGTGTGC............................................. 26 0 13 0.15 2 2 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCC...................................................................... 22 1 14 0.14 2 0 2 0 0 0 0
.............TGGACATCCTTCTTCGTCGCTGGAAT............................................................................................................................... 26 0 14 0.14 2 2 0 0 0 0 0
...........................................................................CGTCTAACGCTGATAATGGCTTG.................................................................... 23 0 14 0.14 2 2 0 0 0 0 0
...........................................................................CGTCTAACGCTGATAATGGCTTGT................................................................... 24 0 14 0.14 2 2 0 0 0 0 0
...........................................................................CGTCTAACGCTGATAATGGCTTGTG.................................................................. 25 0 14 0.14 2 2 0 0 0 0 0
................................................TCGTCAGATAAGTAGCCCTCTTGTTG............................................................................................ 26 0 16 0.13 2 2 0 0 0 0 0
...................TCCTTCTTCGTCGCTGGAATGGTCG.......................................................................................................................... 25 0 16 0.13 2 2 0 0 0 0 0
.........................TTCGTCGCTGGAATGGTCGCAGCTCG................................................................................................................... 26 0 16 0.13 2 2 0 0 0 0 0
................................................TCGTCAGATAAGTAGCCCTCTTG............................................................................................... 23 0 16 0.13 2 2 0 0 0 0 0
........................CTTCGTCGCTGGAATGGTCGCAGCTC.................................................................................................................... 26 0 16 0.13 2 2 0 0 0 0 0
.................................TGGAATGGTCGCAGCTCGTCAG............................................................................................................... 22 0 17 0.12 2 1 0 1 0 0 0
.......................................................................................................................................CCATCAGTGGAAAGCGTGCGTCCCGCG.... 27 1 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAATCGTGCGTCCC....... 24 1 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCTA..... 26 2 12 0.08 1 1 0 0 0 0 0
......................................................................................................................................GTCATCAGTGGAAAGCGTGCGT.......... 22 0 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................TCATCAGTGGACAGCGTGCGTCCCGCGC... 28 1 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCG........... 20 0 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGA..... 26 1 12 0.08 1 1 0 0 0 0 0
......................................................................................................................................GTCATCAGTGGAAAGCGTGCGTCCCGCGC... 29 0 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................TCACCAGTGGAAAGCGTGCGTCCC....... 24 1 12 0.08 1 0 1 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCTTCCCGCGC... 28 1 12 0.08 1 1 0 0 0 0 0
................................................................................................................................TACGTTGTCATCAGTGGAAAGCGTGC............ 26 0 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................TCATCAGCGGAAAGCGTGCGTCCCG...... 25 1 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGCT.... 27 1 12 0.08 1 0 1 0 0 0 0
.........................................................................................................................................AGCAGTGGAAAGCGTGCGTCCCG...... 23 1 12 0.08 1 0 1 0 0 0 0
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCGCGCA.. 28 0 12 0.08 1 1 0 0 0 0 0
......................................................................................................................................GTCATCAGTGGAAAGCGTGCGTCCCGCG.... 28 0 12 0.08 1 1 0 0 0 0 0
.....................................................................................................................................ACTCATCAGTGGAAAGCGTGCGTCCC....... 26 2 12 0.08 1 1 0 0 0 0 0
......................................................................................................................................ATCATCAGTGGAAAGCGTGCGTCCCGC..... 27 1 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGCGT... 28 1 12 0.08 1 1 0 0 0 0 0
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCGCGCT.. 28 1 12 0.08 1 1 0 0 0 0 0
........................................................................................................................................CATCAGTGGAAAGCGTGCGTC......... 21 0 12 0.08 1 0 1 0 0 0 0
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCT...... 25 1 12 0.08 1 1 0 0 0 0 0
.............................................................................................................................................GTGGAAAGCGTGCGTCCC....... 18 0 13 0.08 1 0 1 0 0 0 0
..................................................................................................TGGTTCGTTTTTTTTCAGTGTGCGG........................................... 25 0 13 0.08 1 1 0 0 0 0 0
..........TCATGGACATCCTTCTTCGTCGCTGG.................................................................................................................................. 26 0 13 0.08 1 1 0 0 0 0 0
..................................................................................................TGGTTCGTTTTTTTTCAGTGTGCGGCT......................................... 27 0 13 0.08 1 1 0 0 0 0 0
..................................................................TCTTGTTGTCGTCTAACGCTGATAATG......................................................................... 27 0 13 0.08 1 1 0 0 0 0 0
............ATGGACATCCTTCTTCGTCGC..................................................................................................................................... 21 0 13 0.08 1 1 0 0 0 0 0
...............................................................................................TTGTGGTTCGTTTTTTTTCAGTTTGC............................................. 26 1 13 0.08 1 0 0 0 1 0 0
.....................................................................TGTTGTCGTCTAACGCTGATAATG......................................................................... 24 0 13 0.08 1 1 0 0 0 0 0
........CATCATGGACATCCTTCTTCGTCGCT.................................................................................................................................... 26 0 13 0.08 1 1 0 0 0 0 0
..........TCATGGACATCCTTCTTCGTCGCT.................................................................................................................................... 24 0 13 0.08 1 1 0 0 0 0 0
..................................................................................................TGGTTCGTTTTTTTTCGGTGT............................................... 21 1 13 0.08 1 0 0 1 0 0 0
............................................................................................................................................AGTGGAAAGCGTGCGTCCCGCGC... 23 0 13 0.08 1 1 0 0 0 0 0
..................................................................TCTTGTTGTCGTCTAACGCTGATAATGGC....................................................................... 29 0 13 0.08 1 1 0 0 0 0 0
..........TCATGGACATCCTTCTTCGTCGCTGGA................................................................................................................................. 27 0 13 0.08 1 1 0 0 0 0 0
.......TCATCATGGACATCCTTCTTCGTCGC..................................................................................................................................... 26 0 13 0.08 1 1 0 0 0 0 0
.....................................................................................................TTCGTTTTTTTTCAGTGTGCGGCT......................................... 24 0 13 0.08 1 1 0 0 0 0 0
....................................................................................CTGATAATGGCTTGTGGTTCGTTT.......................................................... 24 0 13 0.08 1 0 1 0 0 0 0
...............................................................................TAACGCTGATAATGGCTTGTGGTTCGT............................................................ 27 0 13 0.08 1 1 0 0 0 0 0
.....................................................................................TGATAATGGCTTGTGGTTCGTTT.......................................................... 23 0 13 0.08 1 1 0 0 0 0 0
.........................................................................................................TTTTTTTTCAGTGTGCGGCTGCATA.................................... 25 0 13 0.08 1 1 0 0 0 0 0
......................................................................................................TTCGTTTTTTTCAGTGTGCGGCTGCA...................................... 26 3 13 0.08 1 1 0 0 0 0 0
...............................................................................................TTGTGGTTCGTCTTTTTTCAGC................................................. 22 2 13 0.08 1 1 0 0 0 0 0
.....AGTCATCATGGACATCCTTCTTCG......................................................................................................................................... 24 0 13 0.08 1 1 0 0 0 0 0
.....................................................................................................TTCGTTTTTTTTCAGTGTGCGGCTG........................................ 25 0 13 0.08 1 1 0 0 0 0 0
.TGGCAGTCATCATGGACATCCTTCTTC.......................................................................................................................................... 27 0 13 0.08 1 1 0 0 0 0 0
.TGGCAGTCATCATGGACATCCT............................................................................................................................................... 22 0 13 0.08 1 1 0 0 0 0 0
.....................................................................................TGATAATGGCTTGTGGTTCGTTTTT........................................................ 25 0 13 0.08 1 1 0 0 0 0 0
....CAGTCATCATGGACATCCTTCTTCG......................................................................................................................................... 25 0 13 0.08 1 1 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGC....................................................................... 21 0 14 0.07 1 1 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGGTT............................................................... 29 0 14 0.07 1 1 0 0 0 0 0
.......................................................................TTGTCGTCTAACGCTGATAATGGCTTGTG.................................................................. 29 0 14 0.07 1 1 0 0 0 0 0
..............GGACATCCTTCTTCGTCGCTGGAAT............................................................................................................................... 25 0 14 0.07 1 1 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATTGCTTG.................................................................... 24 1 14 0.07 1 1 0 0 0 0 0
...................................................................CTTGTTGTCGTCTAACGCTGATAA........................................................................... 24 0 14 0.07 1 1 0 0 0 0 0
........................................................................TGTCGTCTAACGCTGATAATGGCT...................................................................... 24 0 14 0.07 1 1 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTTTTG................................................................. 27 2 14 0.07 1 0 0 1 0 0 0
...............................................................CCCTCTTGTTGTCGTCTAACGCTGA.............................................................................. 25 0 14 0.07 1 0 0 0 1 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGGC................................................................ 28 1 14 0.07 1 1 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTTTG.................................................................. 26 1 14 0.07 1 1 0 0 0 0 0
..........................................................................TGGTCTAACGCTGATAATGGCTTGT................................................................... 25 1 14 0.07 1 0 1 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGA................................................................. 27 1 14 0.07 1 1 0 0 0 0 0
.......................................................................TTGTCGTCTAACGCTGATAATGGCTTT.................................................................... 27 1 14 0.07 1 1 0 0 0 0 0
..........................................................................TTGTCTAACGCTGATAATGGCTTGC................................................................... 25 2 14 0.07 1 0 1 0 0 0 0
........................................................................TGTCGTCTAACGCTGATAATGGC....................................................................... 23 0 14 0.07 1 1 0 0 0 0 0
........................................................TAAGTAGCCCTCTTGTTGTCGTCTA..................................................................................... 25 0 14 0.07 1 1 0 0 0 0 0
.............TGGACATCCTTCTTCGTCGCTGGAA................................................................................................................................ 25 0 14 0.07 1 1 0 0 0 0 0
.........................................................................GTCGTCTAACGCTGATAATGGCTTGT................................................................... 26 0 14 0.07 1 1 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATCTAT...................................................................... 22 3 14 0.07 1 1 0 0 0 0 0
..........................................................................CCGTCTAACGCTGATAATGGCTTGTGG................................................................. 27 1 14 0.07 1 1 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTGA................................................................... 25 1 14 0.07 1 1 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGCC................................................................ 28 2 14 0.07 1 1 0 0 0 0 0
..................................................................TCTTGTTGTCGTCTAACGCTGATA............................................................................ 24 0 14 0.07 1 1 0 0 0 0 0
........................................................TAAGTAGCCCTCTTGTTGTCGTC....................................................................................... 23 0 14 0.07 1 1 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGT................................................................. 27 1 14 0.07 1 1 0 0 0 0 0
...............................................................CCCTCTTGTTGTCGTCTAACGCTGAT............................................................................. 26 0 14 0.07 1 1 0 0 0 0 0
.......................................................ATAAGTAGCCCTCTTGTTGTCGTCTAAC................................................................................... 28 0 14 0.07 1 1 0 0 0 0 0
..........................................................................TCGTCTAACGCTGATAATGGCTTGGG.................................................................. 26 1 14 0.07 1 1 0 0 0 0 0
...........................................................................CGTCTAACGCTGATAATGGCTT..................................................................... 22 0 14 0.07 1 1 0 0 0 0 0
.........................................................................GTCGTCTAACGCTGATAATGGCTTG.................................................................... 25 0 14 0.07 1 1 0 0 0 0 0
....................................................................................................................TGTGCGGCTGCATACGTTGTC............................. 21 0 15 0.07 1 1 0 0 0 0 0
......................GTCTTCGTCGCTGGAATGGTCGCAGC...................................................................................................................... 26 1 16 0.06 1 1 0 0 0 0 0
.......................TCTTCATCGCTGGAATGGTCGCAGC...................................................................................................................... 25 1 16 0.06 1 0 1 0 0 0 0
............................GTCGCTGGAATGGTCGCAGCTCGTCA................................................................................................................ 26 0 16 0.06 1 0 0 1 0 0 0
........................................................TAAGTAGCCCTCTTGTTGCCTC........................................................................................ 22 3 16 0.06 1 1 0 0 0 0 0
...................................................TCAGATAAGTAGCCCTCTTGTTC............................................................................................ 23 1 16 0.06 1 1 0 0 0 0 0
................................................TCGTCAGATAAGTAGCCCTCTTGT.............................................................................................. 24 0 16 0.06 1 0 1 0 0 0 0
........................CTTCGTCGCTGAAATGGTCGCAGC...................................................................................................................... 24 1 16 0.06 1 1 0 0 0 0 0
.................................................CGTCAGATAAGTAGCCCTCTTGTTG............................................................................................ 25 0 16 0.06 1 1 0 0 0 0 0
.......................TCTTCGTCGCTAGAATGGTCGCAGC...................................................................................................................... 25 1 16 0.06 1 1 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGGCCGCAGC...................................................................................................................... 25 1 16 0.06 1 1 0 0 0 0 0
......................TGCTTCGTCGCTGGATTGGTCGCAGCTC.................................................................................................................... 28 2 16 0.06 1 0 1 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCGCAGCGC.................................................................................................................... 27 1 16 0.06 1 0 1 0 0 0 0
...................................................TCAGATAAGTAGCCCTCTTGTC............................................................................................. 22 1 16 0.06 1 0 1 0 0 0 0
.......................TCTTCGTCGCTTGAATGGTCGCAG....................................................................................................................... 24 1 16 0.06 1 1 0 0 0 0 0
...................TCCTTCTTCGTCGCTGGAATGGTC........................................................................................................................... 24 0 16 0.06 1 1 0 0 0 0 0
..................................................GTCAGATAAGTAGCCCTCTTGTTGCCC......................................................................................... 27 2 16 0.06 1 0 1 0 0 0 0
.......................TGTTCGTCGCTGGAATGGTCGCAGC...................................................................................................................... 25 1 16 0.06 1 0 1 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCGCAA....................................................................................................................... 24 1 16 0.06 1 1 0 0 0 0 0
.....................CTTCTTCGTCGCTGGAATGGTCGCAG....................................................................................................................... 26 0 16 0.06 1 1 0 0 0 0 0
.......................TCTCCGTCGCTGGAATGGTCGCAGC...................................................................................................................... 25 1 16 0.06 1 0 1 0 0 0 0
.......................TCGTCGTCGCTGGAATGGTCGCAGC...................................................................................................................... 25 1 16 0.06 1 1 0 0 0 0 0
........................CTTCGTCGCTGGAATGGTCGCAGCTCG................................................................................................................... 27 0 16 0.06 1 1 0 0 0 0 0
...................................................TCAGATAAGTAGCCCTCTTGTTGCCCC........................................................................................ 27 3 16 0.06 1 1 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCGCAGCTCGT.................................................................................................................. 29 0 16 0.06 1 1 0 0 0 0 0
.......................TCCTCGTCGCTGGAATGGTCGCAGCT..................................................................................................................... 26 1 16 0.06 1 0 1 0 0 0 0
......................ATCTTCGTCGCTGGAATGGTCGCAGC...................................................................................................................... 26 1 16 0.06 1 1 0 0 0 0 0
............................GTCGCTGGAATGGTCGCAGCTCGTCAG............................................................................................................... 27 0 16 0.06 1 0 0 1 0 0 0
...............................GCTGGAATGGTCGCAGCTCGTCAG............................................................................................................... 24 0 16 0.06 1 0 0 0 0 1 0
..........................TCGTCGCTGGAATGGTCGCAG....................................................................................................................... 21 0 16 0.06 1 1 0 0 0 0 0
..............................................GCTCGTCAGATAAGTAGCCCTCTTG............................................................................................... 25 0 16 0.06 1 1 0 0 0 0 0
.............................TCGCTGGAATGGTCGCAGCTCGTCAG............................................................................................................... 26 0 16 0.06 1 1 0 0 0 0 0
......................GTCTTCGTCGCTGGAATGGTCGCAGCT..................................................................................................................... 27 1 16 0.06 1 1 0 0 0 0 0
.................................................CGTCAGATAAGTAGCCCTCTTTTC............................................................................................. 24 2 16 0.06 1 1 0 0 0 0 0
...............................................CTCGTCAGATAAGTAGCCCTC.................................................................................................. 21 0 17 0.06 1 1 0 0 0 0 0
......................TTCTTCGTCGCTGGAATGGTCGCA........................................................................................................................ 24 0 17 0.06 1 1 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGG............................................................................................................................. 18 0 17 0.06 1 1 0 0 0 0 0
........................CTTCGTCGCTGGAATGGTC........................................................................................................................... 19 0 17 0.06 1 1 0 0 0 0 0
.......................TCTTCGTCGCTCGAATGGTCGCA........................................................................................................................ 23 1 17 0.06 1 1 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCTT......................................................................................................................... 22 2 17 0.06 1 1 0 0 0 0 0
.................................TGGAATGGTCGCAGCTCGTCAGATA............................................................................................................ 25 0 17 0.06 1 0 0 1 0 0 0
......................TTCTTCGTCGCTGGAATGGTCG.......................................................................................................................... 22 0 17 0.06 1 1 0 0 0 0 0
.........................TTCGTCGCTGGAGTGGTCGCA........................................................................................................................ 21 1 17 0.06 1 1 0 0 0 0 0
................................................TCGTCAGATAAGTAGCCCTCT................................................................................................. 21 0 17 0.06 1 1 0 0 0 0 0
.......................TCTTCGTCGCTGGAATGGTCCC......................................................................................................................... 22 1 17 0.06 1 1 0 0 0 0 0
.......................TCTCCGTCGCTGGAATGGTCGC......................................................................................................................... 22 1 17 0.06 1 0 0 0 1 0 0
........................CTTCGTCGCTGGAATGGTCG.......................................................................................................................... 20 0 17 0.06 1 1 0 0 0 0 0
.........................TTCGTCGCTGGAATGGTCGCA........................................................................................................................ 21 0 17 0.06 1 1 0 0 0 0 0
......................TTCTTCGTCGCTGGAATG.............................................................................................................................. 18 0 18 0.06 1 1 0 0 0 0 0
............................................................................GTCTAATGCTGGTAATGG........................................................................ 18 2 19 0.05 1 0 1 0 0 0 0
.......................TCTTCGTCGCTGGAATAAA............................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................GTCAGCGTGCGTCCCACGC... 19 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

CACCGTCAGTAGTACCTGTAGGAAGAAGCAGCGACCTTACCAGCGTCGAGCAGTCTATTCATCGGGAGAACAACAGCAGATTGCGACTATTACCGAACACCAAGCAAAAAAAAGTCACACGCCGACGTATGCAACAGTAGTCACCTTTCGCACGCAGGGCGCGTCG
**************************************************....(((....((((...((((((.(((...))).)))))).))))....))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
..............................................................CGGGAGAACAACAGCAGATTGC.................................................................................. 22 0 14 8.07 113 76 20 3 14
...........................................................CATCGGGAGAACAACAGCAGATTGC.................................................................................. 25 0 14 5.29 74 63 8 3 0
........................................................................................................................GCCGACGTATGCAACAGTAGTCACC..................... 25 0 13 4.23 55 52 2 0 1
.........................................................................................................................CCGACGTATGCAACAGTAGTCACC..................... 24 0 13 4.08 53 30 23 0 0
..........AGTACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 23 0 13 3.46 45 41 2 2 0
.............................................................TCGGGAGAACAACAGCAGATTGC.................................................................................. 23 0 14 3.36 47 40 5 2 0
...............................................................GGGAGAACAACAGCAGATTGC.................................................................................. 21 0 14 3.21 45 38 5 1 1
...........GTACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 22 0 13 3.08 40 38 2 0 0
............................................................ATCGGGAGAACAACAGCAGATTGC.................................................................................. 24 0 14 3.07 43 43 0 0 0
.......................................................................................................................CGCCGACGTATGCAACAGTAGTCACC..................... 26 0 13 2.92 38 35 3 0 0
..........................................................................................................................CGACGTATGCAACAGTAGTCACC..................... 23 0 13 2.92 38 28 10 0 0
.......AGTAGTACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 26 0 13 2.08 27 24 2 1 0
........GTAGTACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 25 0 13 1.92 25 20 4 1 0
................................................................GGAGAACAACAGCAGATTGC.................................................................................. 20 0 14 1.29 18 14 3 0 1
.....................................................................................................................CACGCCGACGTATGCAACAGTAGTCACC..................... 28 0 13 1.00 13 11 2 0 0
......CAGTAGTACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 27 0 13 0.92 12 12 0 0 0
..............................................................CGGGAGAACAACAGCAGATTG................................................................................... 21 0 14 0.79 11 11 0 0 0
.........TAGTACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 24 0 13 0.62 8 6 2 0 0
............................................................TTCGGGAGAACAACAGCAGATTGC.................................................................................. 24 1 14 0.50 7 6 1 0 0
..............................................................CGGGAGAACAACAGCAGATTTC.................................................................................. 22 1 14 0.50 7 1 6 0 0
......................................................................................................................ACGCCGACGTATGCAACAGTAGTCACC..................... 27 0 13 0.46 6 6 0 0 0
....................................................................................................................ACACGCCGACGTATGCAACAGTAGTCACC..................... 29 0 13 0.38 5 5 0 0 0
........................................................................................................................GCCGACGTATGCAACAGTAGTCAC...................... 24 0 13 0.38 5 5 0 0 0
.........................................................................................................................CCGACGTATGCAACAGTAGTCAC...................... 23 0 13 0.31 4 4 0 0 0
..........................................................TCATCGGGAGAACAACAGCAGAT..................................................................................... 23 0 14 0.29 4 3 0 1 0
.........................................................TTCATCGGGAGAACAACAGCAGAT..................................................................................... 24 0 14 0.29 4 4 0 0 0
.............................................................................................................................CGTATGCAACAGTAGTCACC..................... 20 0 13 0.23 3 2 1 0 0
...........................................................................................................................GACGTATGCAACAGTAGTCACC..................... 22 0 13 0.23 3 3 0 0 0
...........GTACCTGTAGGAAGAAGCAGC...................................................................................................................................... 21 0 13 0.23 3 3 0 0 0
.......................................................................................................................CGCCGACGTATGCAACAGTAGTCAC...................... 25 0 13 0.23 3 3 0 0 0
..........AGTACCTGTAGGAAGAAGCAGC...................................................................................................................................... 22 0 13 0.23 3 3 0 0 0
...........................................................CATCGGGAGAACAACAGCAGATTTC.................................................................................. 25 1 14 0.21 3 0 3 0 0
...................................................AGTCTATTCATCGGGAGAACAACAGCA........................................................................................ 27 0 14 0.21 3 3 0 0 0
...........................................................CATCGGGAGAACAACAGCAGAT..................................................................................... 22 0 14 0.21 3 3 0 0 0
............................................................ATCGGGAGAACAACAGCAGATTG................................................................................... 23 0 14 0.21 3 3 0 0 0
...........................................................CATCGGGAGAACAACAGCAGATTG................................................................................... 24 0 14 0.21 3 3 0 0 0
..............................GCGACCTTACCAGCGTCGAGCAGTCT.............................................................................................................. 26 0 16 0.19 3 3 0 0 0
.........................................................................................TTACCGAACACCAAGCAAAAAAAAGT................................................... 26 0 12 0.17 2 1 1 0 0
.......................................................................................................................AGCCGACGTATGCAACAGTAGTCACC..................... 26 1 13 0.15 2 1 1 0 0
...........................................................................................................................GACGTATGCAACAGTAGTCAC...................... 21 0 13 0.15 2 2 0 0 0
...................................................................................................................CACACGCCGACGTATGCAACAGTAGTCAC...................... 29 0 13 0.15 2 2 0 0 0
............TACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 21 0 13 0.15 2 1 1 0 0
............................................................................................................................ACGTATGCAACAGTAGTCACC..................... 21 0 13 0.15 2 2 0 0 0
...CGTCAGTAGTACCTGTAGGAAGAAGC......................................................................................................................................... 26 0 13 0.15 2 2 0 0 0
.........................................................................................................................CCGACGTATGCAACAGTAGTTACC..................... 24 1 13 0.15 2 0 2 0 0
..........................................................................................................................CGACGTATGCAACAGTAGTCACCT.................... 24 0 13 0.15 2 2 0 0 0
..............................................................CGGGAGAACAACAGCAGATTGCGACT.............................................................................. 26 0 14 0.14 2 2 0 0 0
..............................................................CGGGAGAACACCAGCAGATTGC.................................................................................. 22 1 14 0.14 2 1 0 0 1
..........................................................TCATCGGGAGAACAACAGCAGATTGC.................................................................................. 26 0 14 0.14 2 2 0 0 0
........................................................TTTCATCGGGAGAACAACAGCAGAT..................................................................................... 25 1 14 0.14 2 2 0 0 0
...............................................................GGGAGAACAACAGCAGATTGCGA................................................................................ 23 0 14 0.14 2 2 0 0 0
...............................................................GGGAGAACAACAGCAGATTG................................................................................... 20 0 14 0.14 2 1 1 0 0
.............ACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 20 0 14 0.14 2 1 1 0 0
..............................................................CGGTAGAACAACAGCAGATTGC.................................................................................. 22 1 14 0.14 2 0 2 0 0
.............................................................TCGGGAGAACAACAGCAGATTG................................................................................... 22 0 14 0.14 2 2 0 0 0
...........................................................CATCGGGAGAACAACAGCAGATCGC.................................................................................. 25 1 14 0.14 2 0 2 0 0
...........................................................AATCGGGAGAACAACAGCAGATTGC.................................................................................. 25 1 14 0.14 2 2 0 0 0
.............................................................TCGGGAGAACAACAGCAGATT.................................................................................... 21 0 14 0.14 2 1 1 0 0
........................................................ATTCATCGGGAGAACAACAGCAGAT..................................................................................... 25 0 14 0.14 2 2 0 0 0
.............................................................TCGGGAGAACAACAGCAGATTTC.................................................................................. 23 1 14 0.14 2 0 2 0 0
....................GGAAGAAGCAGCGACCTTACCAGCGT........................................................................................................................ 26 0 16 0.13 2 1 0 1 0
..................................CCTTACCAGCGTCGAGCAGTCTATT........................................................................................................... 25 0 17 0.12 2 2 0 0 0
...................................CTTACCAGCGTCGAGCAGTCT.............................................................................................................. 21 0 17 0.12 2 2 0 0 0
........................................................................................................................................GTAGTCACCTTTCGCACGCA.......... 20 0 12 0.08 1 1 0 0 0
.................................................................................................................................TGCAACAGTAGTCACCTTTCGC............... 22 0 12 0.08 1 1 0 0 0
..........................................................................................TACCGAACACCAAGCAAAAAAAAGTCAC................................................ 28 0 12 0.08 1 1 0 0 0
.........................................................................................CTACCGAACACCAAGCAAAAAAAAGT................................................... 26 1 12 0.08 1 1 0 0 0
..........................................................................................TACCGAACACCAAGCAAAAAAAATT................................................... 25 1 12 0.08 1 0 1 0 0
...........................................................................................................................................GTCACCTTTCGCACGCAGGGCGCGTC. 26 0 12 0.08 1 1 0 0 0
.......................................................................................................................................AGTAGTCACCTTTCGCACGCAGGGCGC.... 27 0 12 0.08 1 1 0 0 0
.............................................................................................................................................CACCTTTCGCACGCAGGGCGCGTC. 24 0 12 0.08 1 1 0 0 0
..........................................................................................................................CGACGTATGCAACAGTAGTCACT..................... 23 1 13 0.08 1 1 0 0 0
.....................................................................................................................AACGCCGACGTATGCAACAGTAGTCAC...................... 27 1 13 0.08 1 1 0 0 0
...........GTACCTGTAGAAAGAAGCAGCG..................................................................................................................................... 22 1 13 0.08 1 1 0 0 0
.......AGTAGTACCTGTAGGAATAAGCAGCT..................................................................................................................................... 26 2 13 0.08 1 0 1 0 0
.....CCAGTAGTACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 28 1 13 0.08 1 1 0 0 0
......CAGTAGTACCTGTAGGAAGAAGCAGC...................................................................................................................................... 26 0 13 0.08 1 1 0 0 0
........GTAGTACCTGTAGGAAGAAGCAGC...................................................................................................................................... 24 0 13 0.08 1 0 1 0 0
.......AGTAGTACCTGTAGGAAGAAGCAG....................................................................................................................................... 24 0 13 0.08 1 1 0 0 0
.......AGTAGTACCTGTAGGAAGAAGC......................................................................................................................................... 22 0 13 0.08 1 1 0 0 0
...........GTACCTGTAGGAAGAAGCAGCA..................................................................................................................................... 22 1 13 0.08 1 0 1 0 0
......CAGTAGTACCTGTAGGAAGAAGCAGGG..................................................................................................................................... 27 1 13 0.08 1 0 1 0 0
.........................................................................................................................CCGACGTATGCAACAGTAGTCCCC..................... 24 1 13 0.08 1 0 1 0 0
......................................................................................................................CCGCCGACGTATGCAACAGTAGTCACC..................... 27 1 13 0.08 1 1 0 0 0
.......................................................................................................................CGCCGGCGTATGCAACAGTAGTCACC..................... 26 1 13 0.08 1 0 1 0 0
.........................................................................................................................CCGACGTATGCAACAGTAGTCACCT.................... 25 0 13 0.08 1 1 0 0 0
...........................................................................................................................GACGTATGCAACAGTAGTCATC..................... 22 1 13 0.08 1 0 1 0 0
.....................................................................................................................CACGCCGACGTATGCAACAGTAATCACCT.................... 29 1 13 0.08 1 1 0 0 0
........GTAGTACCTATAGGAAGAAGCAGCG..................................................................................................................................... 25 1 13 0.08 1 0 1 0 0
..........AGTACCTGTAGGAAGAAGCA........................................................................................................................................ 20 0 13 0.08 1 1 0 0 0
......CAGTAGTACCTGTAGGAAGA............................................................................................................................................ 20 0 13 0.08 1 1 0 0 0
..........AGTACCTGTAGGCAGCAGCAGCG..................................................................................................................................... 23 2 13 0.08 1 0 1 0 0
.........................................................................................................................CCGACGTATGCCACAGTAGTCACC..................... 24 1 13 0.08 1 0 1 0 0
....................................................................................GACTATTACCGAACACCAAGC............................................................. 21 0 13 0.08 1 1 0 0 0
..............................................................................................................................GTATGCAACAGTAGTCACCTTTC................. 23 0 13 0.08 1 1 0 0 0
..........AGTACCTGTAGGAAGAAGCAGGG..................................................................................................................................... 23 1 13 0.08 1 0 1 0 0
..........AGTACCTGTAGGAAGAAGCAG....................................................................................................................................... 21 0 13 0.08 1 1 0 0 0
......CAGTAGTACCTTTAGGAAGAAGCAGCG..................................................................................................................................... 27 1 13 0.08 1 0 1 0 0
............................................................................................................................ACGTATGCAACAGTAGTCAC...................... 20 0 13 0.08 1 1 0 0 0
...........GTACCTGTAGGAAGAAGCAG....................................................................................................................................... 20 0 13 0.08 1 1 0 0 0
..CCGTCAGTAGTACCTGTAGGAA.............................................................................................................................................. 22 0 13 0.08 1 1 0 0 0
....................................................................................................................CTACGCCGACGTATGCAACAGTAGTCACC..................... 29 2 13 0.08 1 1 0 0 0
....CTCAGTAGTACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 29 1 13 0.08 1 1 0 0 0
.....TCAGTAGTACCTGTAGGAAGAAGCAGCG..................................................................................................................................... 28 0 13 0.08 1 1 0 0 0
........................................................................................................................TCCGACGTATGCAACAGTAGTCACC..................... 25 1 13 0.08 1 1 0 0 0
.......................................................................................................................CGCCGACGTATGGAACAGTAGTCACC..................... 26 1 13 0.08 1 1 0 0 0
.........................................................................................................................CCGACGTATGCAACAGTAGTCAGC..................... 24 1 13 0.08 1 0 1 0 0
......................................................................................................................ACGCCGACGTATGCAACAGTAGTC........................ 24 0 13 0.08 1 1 0 0 0
.......AGTAGTACCTGTAGGAAGAAGCAGC...................................................................................................................................... 25 0 13 0.08 1 1 0 0 0
.....................................................................................................................CACGCCGACGTATGCAACAGTAGTCACCG.................... 29 1 13 0.08 1 1 0 0 0
.............................................................................AGATTGCGACTATTACCGAACACCAAGC............................................................. 28 0 13 0.08 1 1 0 0 0
.........TAGTACCTGTAGAAAGAAGCAGCG..................................................................................................................................... 24 1 13 0.08 1 1 0 0 0
......................................................................................................................ACGCCGACGTATGCAACAGTAGTCAC...................... 26 0 13 0.08 1 1 0 0 0
................................................................................TTGCGACTATTACCGAACACCAAGC............................................................. 25 0 13 0.08 1 0 0 1 0
.........................................................TTTATCGGGAGAACAACAGCAGAT..................................................................................... 24 1 14 0.07 1 1 0 0 0
............................................................ATCGGGAGAACAACAGCAGAT..................................................................................... 21 0 14 0.07 1 1 0 0 0
..........................................................CCATCGGGAGAACCACAGCAGATCGC.................................................................................. 26 3 14 0.07 1 0 1 0 0
.............................................................CCGGGAGAACAACAGCAGATCGC.................................................................................. 23 2 14 0.07 1 0 1 0 0
..........................................................ACATCGGGAGAACAACAGCAGATTGC.................................................................................. 26 1 14 0.07 1 1 0 0 0
.............................................................CCGGGAGAACAACAGCAGAGTTC.................................................................................. 23 3 14 0.07 1 0 1 0 0
...........................................................CATCGGGAGAACAAGAGCAGATTGC.................................................................................. 25 1 14 0.07 1 1 0 0 0
.........................................................TTCATCGGGAGAACAACAGCAGATTGC.................................................................................. 27 0 14 0.07 1 1 0 0 0
...........................................................CATCGGGAGAACAACGGCAGATTG................................................................................... 24 1 14 0.07 1 1 0 0 0
............................................................CTCGGGAGAACAACAGCAGATTGC.................................................................................. 24 1 14 0.07 1 1 0 0 0
......................................................CTATTCATCGGGAGAACAACAGCAGAT..................................................................................... 27 0 14 0.07 1 1 0 0 0
..........................................................ATATCGGGAGAACAACAGCAGATTGC.................................................................................. 26 2 14 0.07 1 1 0 0 0
.........................................................ATTATCGGGAGAACAACAGCAGATTGC.................................................................................. 27 2 14 0.07 1 1 0 0 0
..........................................................CTATCGGGAGAACAACAGCAGATTGC.................................................................................. 26 2 14 0.07 1 0 1 0 0
........................................................CCTCATCGGGAGAACAACAGCAGATTGC.................................................................................. 28 2 14 0.07 1 1 0 0 0
.................GTAGGAAGAAGCAGCGACCTTA............................................................................................................................... 22 0 14 0.07 1 1 0 0 0
.................................................................GAGAACAACAGCAGATTGCGACTA............................................................................. 24 0 14 0.07 1 0 0 1 0
................................................................GGAGAACAACAGCAGATTG................................................................................... 19 0 14 0.07 1 1 0 0 0
...........................................................CATCGGGAGAACAACAGCAGATTGCG................................................................................. 26 0 14 0.07 1 1 0 0 0
.....................................................TCTATTCATCGGGAGAACAACAGCA........................................................................................ 25 0 14 0.07 1 0 1 0 0
............................................................ATCGGGAGAACAACAGCAGATTTC.................................................................................. 24 1 14 0.07 1 0 1 0 0
..............................................................CGGGAGAACAGCAGCAGATTGC.................................................................................. 22 1 14 0.07 1 1 0 0 0
...............CTGTAGGAAGAAGCAGCGACCCTA............................................................................................................................... 24 1 14 0.07 1 0 1 0 0
............................................................ATCTGGAGAACAACAGCAGATTGC.................................................................................. 24 1 14 0.07 1 1 0 0 0
..............................................................TGGGAGAACAACAGCAGATTGC.................................................................................. 22 1 14 0.07 1 1 0 0 0
...........................................................TATCGGGAGAACAACAGCAGATTGC.................................................................................. 25 1 14 0.07 1 1 0 0 0
..............................................................CGGGAGAACAACAGCAGATTGCGA................................................................................ 24 0 14 0.07 1 1 0 0 0
..............................................................CAGGAGAACAACAGCAGATTGCGACTAT............................................................................ 28 1 14 0.07 1 0 1 0 0
....................................................GTCTATTCATCGGGAGAACAACAGCA........................................................................................ 26 0 14 0.07 1 0 0 1 0
.............................................................AAAGGAGAACAACAGCAGATTGC.................................................................................. 23 3 14 0.07 1 1 0 0 0
.................................................................GAGAACAACAGCAGATTGC.................................................................................. 19 0 14 0.07 1 1 0 0 0
..............................................................CGGGAGAACAACAGCAGATCTC.................................................................................. 22 2 14 0.07 1 0 1 0 0
................................................................AGAGAACAACAGCAGATTG................................................................................... 19 1 14 0.07 1 1 0 0 0
...........................................................TTTCGGGAGAACAACAGCAGATTGC.................................................................................. 25 2 14 0.07 1 1 0 0 0
...........................................................ATTCGGGAGAACAACAGCAGATTGC.................................................................................. 25 2 14 0.07 1 1 0 0 0
..........................................................TCATCGGGAGAACAACAGCAGGT..................................................................................... 23 1 14 0.07 1 0 1 0 0
...........................................................CATCCGGAGAACAACAGCAGATTGC.................................................................................. 25 1 14 0.07 1 1 0 0 0
......................................................CTATTCATCGGGAGAACAACAGCA........................................................................................ 24 0 14 0.07 1 0 0 1 0
.............................................................CCGGGAGAACAACAGCAGAT..................................................................................... 20 1 14 0.07 1 0 1 0 0
.......................................................TATTCATCGGGAGAACAACAGCAGAT..................................................................................... 26 0 14 0.07 1 1 0 0 0
...........................................................TTTCGGGAGAACAACAGCAGATTG................................................................................... 24 2 14 0.07 1 1 0 0 0
............................................................................CAGATTGCGACTATTACCGAACACC................................................................. 25 0 14 0.07 1 1 0 0 0
........................................................ATTCATCGGGAGAACAACAGCAGATTGC.................................................................................. 28 0 14 0.07 1 1 0 0 0
.............................................................CCGGGAGAACAACAGCAGATTGC.................................................................................. 23 1 14 0.07 1 0 1 0 0
..............................................................CAGGAGAACAACAGCAGATTGC.................................................................................. 22 1 14 0.07 1 0 1 0 0
..........................................................TCATCGGGAGAACAACAGCAGA...................................................................................... 22 0 14 0.07 1 0 1 0 0
.............................................................TCGGGAGAACAACAGCAGA...................................................................................... 19 0 14 0.07 1 1 0 0 0
..............................................................TGGGAGAACAACAGCAGATTGT.................................................................................. 22 2 14 0.07 1 0 0 0 1
..............................................................GGGGAGATCAACAGCAGATTGC.................................................................................. 22 2 15 0.07 1 0 0 0 1
............................................................................CAGATTGCGACTATTCCCGAACACCAA............................................................... 27 1 15 0.07 1 1 0 0 0
..........AGTACCTGGAGGAAGAAGCAGCG..................................................................................................................................... 23 1 15 0.07 1 1 0 0 0
..............................................................CGGGAGACCCACAGCAGATTGC.................................................................................. 22 2 15 0.07 1 0 1 0 0
....................................................................................................................ACACGCCGACGTATGCAACAGT............................ 22 0 15 0.07 1 1 0 0 0
.........................................................................................................................ACGACGTATGCAACAGTAGTCACCTTA.................. 27 2 15 0.07 1 1 0 0 0
..............................................................................................................AAAGTCTCACGCGGACGTAT.................................... 20 2 16 0.06 1 1 0 0 0
...................................................AGTCTATTCATCGGGAGAACAACAG.......................................................................................... 25 0 16 0.06 1 1 0 0 0
...............................................GAGCAGTCTATTCATCGGGAGAACAA............................................................................................. 26 0 16 0.06 1 1 0 0 0
.................................................GCAGTCTATTCATCGGGAGAACAACAG.......................................................................................... 27 0 16 0.06 1 1 0 0 0
............................CAGCGACCTTACCAGCGTCGAGC................................................................................................................... 23 0 16 0.06 1 1 0 0 0
.............................................................................AGATTGCGACTATTACCGAACACCAAG.............................................................. 27 0 16 0.06 1 0 0 1 0
.................................................................................TGCGACTATTACCGAACACCAAG.............................................................. 23 0 16 0.06 1 1 0 0 0
.................................................GCAGTCTATTCATCGGGAGAACAAC............................................................................................ 25 0 16 0.06 1 1 0 0 0
.............................AGCGACCTTACCAGCGTCGAGCAGTCT.............................................................................................................. 27 0 16 0.06 1 1 0 0 0
.......................................................................................................CAAAAAAAAAGTCACACGCCGACGTA..................................... 26 2 16 0.06 1 1 0 0 0
................................GACCTTACCAGCGTCGAGCAGTCTATT........................................................................................................... 27 0 16 0.06 1 1 0 0 0
....................GGAAGAAGCAGCGACCTTACCAGC.......................................................................................................................... 24 0 16 0.06 1 1 0 0 0
......................................ACCAGCGTCGAGCAGTCTATTCA......................................................................................................... 23 0 17 0.06 1 1 0 0 0
...............................................GAGCAGTCTATTCATCGGGAGA................................................................................................. 22 0 17 0.06 1 1 0 0 0
...................................TTTACCAGCGTCGAGCAGTCT.............................................................................................................. 21 1 17 0.06 1 1 0 0 0
...................................CTTACCAGCGTCGAGCAGT................................................................................................................ 19 0 17 0.06 1 1 0 0 0
.................................ACCTTACCAGCGTCGAGCA.................................................................................................................. 19 0 17 0.06 1 1 0 0 0
...................................CTTACCAGCGTCGAGCAGTCTATTCAT........................................................................................................ 27 0 17 0.06 1 1 0 0 0
......................................ACCAGCGTCGAGCAGTCTATTCATCG...................................................................................................... 26 0 17 0.06 1 1 0 0 0
..........................................GCGTCGAGCAGTCTATTCAT........................................................................................................ 20 0 17 0.06 1 0 0 1 0
.......................................CCAGCGTCGAGCAGTCTATTCATC....................................................................................................... 24 0 17 0.06 1 1 0 0 0
.....................................TACCAGCGTCGAGCAGTCTATTCA......................................................................................................... 24 0 17 0.06 1 1 0 0 0
............................................GTCGAGCAGTCTATTCATCGGGAGAC................................................................................................ 26 1 17 0.06 1 0 0 1 0
.................................ACCTTACCAGCGTCGAGCAGTCT.............................................................................................................. 23 0 17 0.06 1 1 0 0 0
..................................CCTTACCAGCGTCGAGCAG................................................................................................................. 19 0 17 0.06 1 0 0 1 0
...................................CTTACCAGCGTCGAGCAGTCTATT........................................................................................................... 24 0 17 0.06 1 1 0 0 0
.......................................CCAGCGTCGAGCAGTCTATTC.......................................................................................................... 21 0 17 0.06 1 1 0 0 0
.................................ACCTTACCAGCGTCGAGCAGTC............................................................................................................... 22 0 17 0.06 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:333920-334085 - dmo_1280 GTGGCAGTCATCATGGACATCCTTCTTCGTCGCTGGAATGGTCGCAGCTCGTCAGATAAGTAGCCCTCTTGTTGTCGTCTAACGCTGATAATGGCTTGTGGTTCGTTTTTTTTCAGTGTGCGGCTGCATACGTTGTCATCAGTGGAAAGCGTGCGTCCCGCGCAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GTGGCAGTCATCATGGACATCCTTCTTCGTCGCTGGAATGGTCGCAGCTCGTCAGATAAGTAGCCCTCTTGTTGTCGTCTAACGCTGATAATGGCTTGTGGTTCGTTTTTTTTCAGTGTGCGGCTGCATACGTTGTCATCAGTGGAAAGCGTGCGTCCCGCGCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGG.................................................................271412.9318118000010
.......................TCTTCGTCGCTGGAATGGTCGCAGC......................................................................................................................25169.75156143200101
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCG......25125.83706800020
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGCGC...28125.50665910060
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCC.......24124.755738100153
.......................TCTTCGTCGCTGGAATGGTCGCAG.......................................................................................................................24163.44555110003
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCC........23122.42291720082
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGCG....27122.33282520001
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGC.....26122.17262400020
..........................................................................TCGTCTAACGCTGATAATGGCTTGTG..................................................................26141.93272700000
..........................................................................TCGTCTAACGCTGATAATGGCTTG....................................................................24141.79252500000
.......................TCTTCGTCGCTGGAATGGTCGCAGCTCG...................................................................................................................28161.19191900000
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTC.........22121.1714700070
.......................TCTTCGTCGCTGGAATGGTCGCAGCT.....................................................................................................................26161.13181600020
.......................TCTTCGTCGCTGGAATGGTCGC.........................................................................................................................22171.12191300042
...........................................................................CGTCTAACGCTGATAATGGCTTGTGG.................................................................26141.07151500000
..........................................................................TCGTCTAACGCTGATAATGGCTTGT...................................................................25140.93131300000
........................CTTCGTCGCTGGAATGGTCGCAGC......................................................................................................................24160.88141400000
.......................TCTTCGTCGCTGGAATGGTCGCA........................................................................................................................23170.65111100000
..........................................................................TCGTCTAACGCTGATAATGGCTT.....................................................................23140.649900000
.......................TCTTCGTCGCTGGAATGGTCG..........................................................................................................................21170.5910810001
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCGCGC...27120.587700000
.......................TCTTCGTCGCTGGAATGGTCGCAGCTC....................................................................................................................27160.569800001
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGGT................................................................28140.507700000
.......................................................................TTGTCGTCTAACGCTGATAATGGCTTG....................................................................27140.507700000
...................................................TCAGATAAGTAGCCCTCTTGTTG............................................................................................23160.447700000
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCG......24120.425500000
....................................................................TTGTTGTCGTCTAACGCTGATAATG.........................................................................25130.385500000
....................................................................TTGTTGTCGTCTAACGCTGATAATGG........................................................................26130.385500000
.......................................................................TTGTCGTCTAACGCTGATAATGGC.......................................................................24140.365400001
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGCGA...28120.334400000
....................................................................TTGTTGTCGTCTAACGCTGATAATGGC.......................................................................27130.314400000
.......................TCTTCGTCGCTGGAATGGT............................................................................................................................19170.295110021
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGT.....26120.253300000
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGT..........21120.253300000
........................CTTCGTCGCTGGAATGGTCGCAG.......................................................................................................................23160.254400000
.......................TCTTCGTCGCTGGAATGGTC...........................................................................................................................20170.244210010
...............................................................................................TTGTGGTTCGTTTTTTTTCAGTGTG..............................................25130.233300000
.....................................................................................................TTCGTTTTTTTTCAGTGTGCGGC..........................................23130.233100020
..........................................................................TCGTCTAACGCTGATAATGGCT......................................................................22140.213300000
.............TGGACATCCTTCTTCGTCGCTGGAATGG.............................................................................................................................28140.213300000
.......................................................................TTGTCGTCTAACGCTGATAATGGCT......................................................................25140.213200010
............................................................................GTCTAACGCTGATAATGGCTTGTGG.................................................................25140.213300000
........................CTTCGTCGCTGGAATGGTCGCAGCT.....................................................................................................................25160.193300000
........................CTTCGTCGCTGGAATGGTCGCA........................................................................................................................22170.183300000
.....................................ATGGTCGCAGCTCGTCAG...............................................................................................................18170.183001200
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCGCG....26120.172200000
..........................................................................................................................................TCAGTGGAAAGCGTGCGTCCCGCGC...25120.172200000
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCC.......23120.172200000
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCGC.....25120.172200000
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCC......25120.172100010
...............................................................................................TTGTGGTTCGTTTTTTTTCAGTGTGC.............................................26130.152200000
..........................................................................TCGTCTAACGCTGATAATGGCC......................................................................22140.142000020
.............TGGACATCCTTCTTCGTCGCTGGAAT...............................................................................................................................26140.142200000
...........................................................................CGTCTAACGCTGATAATGGCTTG....................................................................23140.142200000
...........................................................................CGTCTAACGCTGATAATGGCTTGT...................................................................24140.142200000
...........................................................................CGTCTAACGCTGATAATGGCTTGTG..................................................................25140.142200000
................................................TCGTCAGATAAGTAGCCCTCTTGTTG............................................................................................26160.132200000
...................TCCTTCTTCGTCGCTGGAATGGTCG..........................................................................................................................25160.132200000
.........................TTCGTCGCTGGAATGGTCGCAGCTCG...................................................................................................................26160.132200000
................................................TCGTCAGATAAGTAGCCCTCTTG...............................................................................................23160.132200000
........................CTTCGTCGCTGGAATGGTCGCAGCTC....................................................................................................................26160.132200000
.................................TGGAATGGTCGCAGCTCGTCAG...............................................................................................................22170.122100001
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCTA.....26120.081100000
......................................................................................................................................GTCATCAGTGGAAAGCGTGCGT..........22120.081100000
.......................................................................................................................................TCATCAGTGGAAAGCGTGCG...........20120.081100000
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGA.....26120.081100000
......................................................................................................................................GTCATCAGTGGAAAGCGTGCGTCCCGCGC...29120.081100000
................................................................................................................................TACGTTGTCATCAGTGGAAAGCGTGC............26120.081100000
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGCT....27120.081000010
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCGCGCA..28120.081100000
......................................................................................................................................GTCATCAGTGGAAAGCGTGCGTCCCGCG....28120.081100000
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCGCGT...28120.081100000
........................................................................................................................................CATCAGTGGAAAGCGTGCGTCCCGCGCT..28120.081100000
........................................................................................................................................CATCAGTGGAAAGCGTGCGTC.........21120.081000010
.......................................................................................................................................TCATCAGTGGAAAGCGTGCGTCCCT......25120.081100000
.............................................................................................................................................GTGGAAAGCGTGCGTCCC.......18130.081000010
..................................................................................................TGGTTCGTTTTTTTTCAGTGTGCGG...........................................25130.081100000
..........TCATGGACATCCTTCTTCGTCGCTGG..................................................................................................................................26130.081100000
..................................................................................................TGGTTCGTTTTTTTTCAGTGTGCGGCT.........................................27130.081100000
..................................................................TCTTGTTGTCGTCTAACGCTGATAATG.........................................................................27130.081100000
............ATGGACATCCTTCTTCGTCGC.....................................................................................................................................21130.081100000
.....................................................................TGTTGTCGTCTAACGCTGATAATG.........................................................................24130.081100000
........CATCATGGACATCCTTCTTCGTCGCT....................................................................................................................................26130.081100000
..........TCATGGACATCCTTCTTCGTCGCT....................................................................................................................................24130.081100000
............................................................................................................................................AGTGGAAAGCGTGCGTCCCGCGC...23130.081100000
..................................................................TCTTGTTGTCGTCTAACGCTGATAATGGC.......................................................................29130.081100000
..........TCATGGACATCCTTCTTCGTCGCTGGA.................................................................................................................................27130.081100000
.......TCATCATGGACATCCTTCTTCGTCGC.....................................................................................................................................26130.081100000
.....................................................................................................TTCGTTTTTTTTCAGTGTGCGGCT.........................................24130.081100000
....................................................................................CTGATAATGGCTTGTGGTTCGTTT..........................................................24130.081000010
...............................................................................TAACGCTGATAATGGCTTGTGGTTCGT............................................................27130.081100000
.....................................................................................TGATAATGGCTTGTGGTTCGTTT..........................................................23130.081100000
.........................................................................................................TTTTTTTTCAGTGTGCGGCTGCATA....................................25130.081100000
.....AGTCATCATGGACATCCTTCTTCG.........................................................................................................................................24130.081100000
.....................................................................................................TTCGTTTTTTTTCAGTGTGCGGCTG........................................25130.081100000
.TGGCAGTCATCATGGACATCCTTCTTC..........................................................................................................................................27130.081100000
.TGGCAGTCATCATGGACATCCT...............................................................................................................................................22130.081100000
.....................................................................................TGATAATGGCTTGTGGTTCGTTTTT........................................................25130.081100000
....CAGTCATCATGGACATCCTTCTTCG.........................................................................................................................................25130.081100000
..........................................................................TCGTCTAACGCTGATAATGGC.......................................................................21140.071100000
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGGTT...............................................................29140.071100000
.......................................................................TTGTCGTCTAACGCTGATAATGGCTTGTG..................................................................29140.071100000
..............GGACATCCTTCTTCGTCGCTGGAAT...............................................................................................................................25140.071100000
...................................................................CTTGTTGTCGTCTAACGCTGATAA...........................................................................24140.071100000
........................................................................TGTCGTCTAACGCTGATAATGGCT......................................................................24140.071100000
...............................................................CCCTCTTGTTGTCGTCTAACGCTGA..............................................................................25140.071010000
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGGC................................................................28140.071100000
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGA.................................................................27140.071100000
.......................................................................TTGTCGTCTAACGCTGATAATGGCTTT....................................................................27140.071100000
........................................................................TGTCGTCTAACGCTGATAATGGC.......................................................................23140.071100000
........................................................TAAGTAGCCCTCTTGTTGTCGTCTA.....................................................................................25140.071100000
.............TGGACATCCTTCTTCGTCGCTGGAA................................................................................................................................25140.071100000
.........................................................................GTCGTCTAACGCTGATAATGGCTTGT...................................................................26140.071100000
..........................................................................TCGTCTAACGCTGATAATGGCTTGA...................................................................25140.071100000
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGCC................................................................28140.071100000
..................................................................TCTTGTTGTCGTCTAACGCTGATA............................................................................24140.071100000
........................................................TAAGTAGCCCTCTTGTTGTCGTC.......................................................................................23140.071100000
..........................................................................TCGTCTAACGCTGATAATGGCTTGTGT.................................................................27140.071100000
...............................................................CCCTCTTGTTGTCGTCTAACGCTGAT.............................................................................26140.071100000
.......................................................ATAAGTAGCCCTCTTGTTGTCGTCTAAC...................................................................................28140.071100000
...........................................................................CGTCTAACGCTGATAATGGCTT.....................................................................22140.071100000
.........................................................................GTCGTCTAACGCTGATAATGGCTTG....................................................................25140.071100000
....................................................................................................................TGTGCGGCTGCATACGTTGTC.............................21150.071100000
............................GTCGCTGGAATGGTCGCAGCTCGTCA................................................................................................................26160.061000001
...................................................TCAGATAAGTAGCCCTCTTGTTC............................................................................................23160.061100000
................................................TCGTCAGATAAGTAGCCCTCTTGT..............................................................................................24160.061000010
.................................................CGTCAGATAAGTAGCCCTCTTGTTG............................................................................................25160.061100000
...................................................TCAGATAAGTAGCCCTCTTGTC.............................................................................................22160.061000010
...................TCCTTCTTCGTCGCTGGAATGGTC...........................................................................................................................24160.061100000
.......................TCTTCGTCGCTGGAATGGTCGCAA.......................................................................................................................24160.061100000
.....................CTTCTTCGTCGCTGGAATGGTCGCAG.......................................................................................................................26160.061100000
........................CTTCGTCGCTGGAATGGTCGCAGCTCG...................................................................................................................27160.061100000
.......................TCTTCGTCGCTGGAATGGTCGCAGCTCGT..................................................................................................................29160.061100000
............................GTCGCTGGAATGGTCGCAGCTCGTCAG...............................................................................................................27160.061000001
...............................GCTGGAATGGTCGCAGCTCGTCAG...............................................................................................................24160.061000100
..........................TCGTCGCTGGAATGGTCGCAG.......................................................................................................................21160.061100000
..............................................GCTCGTCAGATAAGTAGCCCTCTTG...............................................................................................25160.061100000
.............................TCGCTGGAATGGTCGCAGCTCGTCAG...............................................................................................................26160.061100000
...............................................CTCGTCAGATAAGTAGCCCTC..................................................................................................21170.061100000
......................TTCTTCGTCGCTGGAATGGTCGCA........................................................................................................................24170.061100000
.......................TCTTCGTCGCTGGAATGG.............................................................................................................................18170.061100000
........................CTTCGTCGCTGGAATGGTC...........................................................................................................................19170.061100000
.......................TCTTCGTCGCTGGAATGGTCTT.........................................................................................................................22170.061100000
.................................TGGAATGGTCGCAGCTCGTCAGATA............................................................................................................25170.061000001
......................TTCTTCGTCGCTGGAATGGTCG..........................................................................................................................22170.061100000
................................................TCGTCAGATAAGTAGCCCTCT.................................................................................................21170.061100000
........................CTTCGTCGCTGGAATGGTCG..........................................................................................................................20170.061100000
.........................TTCGTCGCTGGAATGGTCGCA........................................................................................................................21170.061100000
......................TTCTTCGTCGCTGGAATG..............................................................................................................................18180.061100000
.......................TCTTCGTCGCTGGAATAAA............................................................................................................................19200.051100000

Generated: 05/18/2015 at 12:05 AM