ID:

dmo_1276

 Coordinate:

scaffold_6498:199136-199257 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-21.5 -21.3 -21.1

Flybase annnotation

intron [Dmoj\GI14069-in]; CDS [Dmoj\GI14069-cds]; exon [dmoj_GLEANR_14118:3]; CDS [Dmoj\GI14069-cds]; exon [dmoj_GLEANR_14118:2]; intron [Dmoj\GI14069-in]

No Repeatable elements found

mature
  1. dmo_1276  scaffold_6498:199149-199176 -
  2. dmo_1288  scaffold_6498:345570-345597 -
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------###################################---------------
AGGACAAGATGAATGGCTGCTGGCACCGCAATTTGGACCAGCGACACATGGTAAATATTAGGCATCTCGAACTGGCTGGTAGCTAGCACCAGCACCATCAGATCCTCAAATGGCAGAAAGCAGGTATGTGGACATCATTATTGACAGTTTACTGAGATCTGTTCAATTACAGATTCAGTAAATCAACTGCATCCATCGGGAGAGCAGGTAAGTGGTCATCAT
****************************************************************((((((((((((((((.......)))))).(((.((...(((......((.....)))))..)))))...(((....)))))))))...))))..*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V056
head
...................................................................................................................................ACATCATTATTGACAGTTTACTGAGATC............................................................... 28 0 2 21.00 42 38 4 0 0
................................................TGGTAAATATTAGGCATCTCGAACTGGC.................................................................................................................................................. 28 0 1 12.00 12 12 0 0 0
................................................TGGTAAATATTAGGCATCTCGAACTGG................................................................................................................................................... 27 0 1 11.00 11 11 0 0 0
................................................TGGTAAATATTAGGCATCTCGAACTG.................................................................................................................................................... 26 0 1 9.00 9 9 0 0 0
................................................TGGTAAATATTAGGCATCTCGAACT..................................................................................................................................................... 25 0 1 9.00 9 4 5 0 0
.......................................................................................................................................................................TACAGATTCAGTAAATCAACTGCA............................... 24 0 1 5.00 5 5 0 0 0
............................................CACATGGTAAATATTAGGCATCTCG......................................................................................................................................................... 25 0 1 4.00 4 4 0 0 0
...............................................................................................................................................................................................TCCATCGGGAGAGCAGGTAAGTGG....... 24 0 1 4.00 4 4 0 0 0
...................................................................................................................................ACATCATTATTGACAGTTTACTGAG.................................................................. 25 0 2 4.00 8 8 0 0 0
..................................................................................................................................................................TCAATTACAGATTCAGTAAATCAACTGCA............................... 29 0 1 3.00 3 3 0 0 0
....................................................................................................................................CATCATTATTGACAGTTTACTGAGATC............................................................... 27 0 2 3.00 6 6 0 0 0
............................................CACATGGTAAATATTAGGCATCTCGAAC...................................................................................................................................................... 28 0 1 3.00 3 3 0 0 0
..................................................................................................................................................................TCAATTACAGATTCAGTAAATCAACTGC................................ 28 0 1 2.00 2 1 1 0 0
...................................................................................................................................ACATCATTATTGACAGTTTACTGAGA................................................................. 26 0 2 2.00 4 4 0 0 0
...............................................................................................................................................................TGTTCAATAATAGATTCAG............................................ 19 2 10 1.80 18 18 0 0 0
......................................................................................................................................................................TTACAGATTCAGTAAATCAACTGCA............................... 25 0 1 1.00 1 1 0 0 0
............................................CACATGGTAAATATTAGGCATCTCGA........................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................TCCATCGGGAGAGCAGGTAAGT......... 22 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................CCATCGGGAGAGCAGGTAAGTGG....... 23 0 1 1.00 1 1 0 0 0
................................................................TCTCGAACTGGCTGGTAGCTAGCACC.................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................TGTTCAATTACAGATTCAGTAAATCAAC................................... 28 0 1 1.00 1 0 1 0 0
............................................................................TGGTAGCTAGCACCAGCACCATCAGATCT..................................................................................................................... 29 1 1 1.00 1 1 0 0 0
.......................................................................................................................................................................TACAGATTCAGTAAATCAACTGCATC............................. 26 0 1 1.00 1 0 1 0 0
............................................................................TGGTAGCTAGCACCAGCACCATCAGATCC..................................................................................................................... 29 0 1 1.00 1 1 0 0 0
..........................................GACACATGGTAAATATTAGGCATCTCG......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.................................................GGTAAATATTAGGCATCTCGAACTGG................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
............................................................................TGGTAGCTAGCACCAGCACCATCAGA........................................................................................................................ 26 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................TCGGGAGAGCAGGTAAGTGGA...... 21 1 1 1.00 1 1 0 0 0
......................................................................................................................................................................................TCAACTGCATCCATCGGGAGAGC................. 23 0 1 1.00 1 0 1 0 0
.........................................................................................................TCAAATGGCAGAAAGCAGGTATGT............................................................................................. 24 0 1 1.00 1 1 0 0 0
................................................TGGTAAATATTAGGCATCTCGAACTGGCT................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0
.............................................ACATGGTAAATATTAGGCATCTCG......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.................................................GGTAAATATTAGGCATCTCGAA....................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................TCGGGAGAGCAGGTAAGTGG....... 20 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................TACAGATTCAGTAAATCAACTGCAT.............................. 25 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................TTACAGATTCAGTAAATCAACTGC................................ 24 0 1 1.00 1 0 1 0 0
............................................................................TGGTAGCTAGCACCAGCACCATCAGATC...................................................................................................................... 28 0 1 1.00 1 1 0 0 0
...................................................TAAATATTAGGCATCTCGAACTGG................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
........................................................................TGGCTGGTAGCTAGCACCAGCACC.............................................................................................................................. 24 0 1 1.00 1 1 0 0 0
....................................................AAATATTAGGCATCTCGAACTG.................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
.........................................................................................................TCAAATGGCAGAAAGCAGGTATGTGG........................................................................................... 26 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................TGTTCAATAATAGATTCAGTAAAA....................................... 24 3 1 1.00 1 0 0 1 0
..........................................................TACGCATCTCGAACTGGCTGGTAGC........................................................................................................................................... 25 1 1 1.00 1 0 1 0 0
.......................................................TATTAGGCATCTCGAACTGGCTGGT.............................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
..........................................................TAGGCATCTCGAACTGGCTGGTAGC........................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..........................................................................................................................................TATTGACAGTTTACTGAGATCTGTTCA......................................................... 27 0 2 0.50 1 1 0 0 0
.................................................................................................TCAGATCCTCAAATGGCAGAAAGCAGG.................................................................................................. 27 0 2 0.50 1 1 0 0 0
...................................................................................................................................ACATCATTATTGACAGTTT........................................................................ 19 0 2 0.50 1 1 0 0 0
.........................................................................................................................................TTATTGACAGTTTACTGAGATCTGT............................................................ 25 0 2 0.50 1 1 0 0 0
....................................................................................................................................CATCATTATTGACAGTTTACC..................................................................... 21 1 2 0.50 1 1 0 0 0
...................................................................................................................................ACATCATTATTGACAGTTTACTGAGC................................................................. 26 1 2 0.50 1 1 0 0 0
......................................................ATATTAGGCATCTCGAACTGGCT................................................................................................................................................. 23 0 2 0.50 1 0 1 0 0
.......................................................................................ACCAGCACCATCAGATCCTCAAATGGCA........................................................................................................... 28 0 2 0.50 1 1 0 0 0
....................................................................................................................................CATCATTATTGACAGTTTACTGAGA................................................................. 25 0 2 0.50 1 1 0 0 0
.................................................................................................TCAGATCCTCAAATGGCAGAAAGCAG................................................................................................... 26 0 2 0.50 1 1 0 0 0
.......................................................................................................................................................................................CAACTGCAACCATCGGGACA................... 20 2 3 0.33 1 0 0 1 0
....................................................................................................................................................................................................CGGGAGTGTGGGTAAGTGGTC..... 21 3 3 0.33 1 0 0 0 1
....................TGGCACAGCAGTTTGGACGAGC.................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 1
..............................................................CAACTCGAACGGGCTGGT.............................................................................................................................................. 18 2 5 0.20 1 1 0 0 0
....................................................................................................GATCATCAAACGGCAGACAGC..................................................................................................... 21 3 8 0.13 1 0 1 0 0
.............................................................................................................................................................GCTGTTCAATAATAGATTCAG............................................ 21 3 11 0.09 1 1 0 0 0
..............................................................................................................................................................CTGTTCAATAATAGATTC.............................................. 18 2 16 0.06 1 1 0 0 0
.............................................................................................................................................TGACAGCATGCTGAGATCTGTT........................................................... 22 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

TCCTGTTCTACTTACCGACGACCGTGGCGTTAAACCTGGTCGCTGTGTACCATTTATAATCCGTAGAGCTTGACCGACCATCGATCGTGGTCGTGGTAGTCTAGGAGTTTACCGTCTTTCGTCCATACACCTGTAGTAATAACTGTCAAATGACTCTAGACAAGTTAATGTCTAAGTCATTTAGTTGACGTAGGTAGCCCTCTCGTCCATTCACCAGTAGTA
***************************************************************((((((((((((((((.......)))))).(((.((...(((......((.....)))))..)))))...(((....)))))))))...))))..**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body
..................................CCTGGTCGCTGTGTACCATTTATA.................................................................................................................................................................... 24 0 2 3.00 6 6 0 0 0
............................GTTAAACCTGGTCGCTGTGTACCATT........................................................................................................................................................................ 26 0 2 3.00 6 6 0 0 0
..............CCGACGACCGTGGTCTTA.............................................................................................................................................................................................. 18 2 8 2.63 21 0 21 0 0
........................................................................................GGTCGTGGTAGTCTAGGAGTTTACCGT........................................................................................................... 27 0 2 2.50 5 5 0 0 0
...................................CTGGTCGCTGTGTACCATTTATA.................................................................................................................................................................... 23 0 2 2.50 5 3 2 0 0
...........................CGTTAAACCTGGTCGCTGTGTACCATT........................................................................................................................................................................ 27 0 2 1.00 2 2 0 0 0
..............................................................GTAGAGCTTGACCGACCAT............................................................................................................................................. 19 0 1 1.00 1 1 0 0 0
...................................................................................................................CTTTCGTCCATACACCTGTAGTAATA................................................................................. 26 0 1 1.00 1 1 0 0 0
.......................................................ATAATCCGTAGAGCTTGACCGACCAT............................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
........................................................................................................................GTCCATACACCTGTAGTAATA................................................................................. 21 0 1 1.00 1 1 0 0 0
..............................................................GTAGAGCTTGACCGACCATCGAT......................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
....GTTCTACTTACCGACGACCGTGGCGTT............................................................................................................................................................................................... 27 0 2 1.00 2 2 0 0 0
.................................................................................CGATCGTGGTCGTGGTAGTCTAGGAGT.................................................................................................................. 27 0 1 1.00 1 1 0 0 0
..................................CCTGGTCGCTGTGTACCATTTAT..................................................................................................................................................................... 23 0 2 1.00 2 2 0 0 0
.....................................GGTCGCTGTGTACCATTTATA.................................................................................................................................................................... 21 0 2 1.00 2 2 0 0 0
.................................................................................................................................................................................CATTTAGTTGACGTAGGTAGCCCT..................... 24 0 1 1.00 1 1 0 0 0
....................................................................................................CTAGGAGTTTACCGTCTTTCGTCCA................................................................................................. 25 0 3 0.67 2 2 0 0 0
.....................................GGTCGCTGTGTACCATTTATAAT.................................................................................................................................................................. 23 0 2 0.50 1 1 0 0 0
.................................ACCTGGTCGCTGTGTACCATT........................................................................................................................................................................ 21 0 2 0.50 1 0 1 0 0
.......................................TCGCTGTGTACCATTTATA.................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0
....GTTCTACTTACCGACGACCGTGGCGT................................................................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0
..............................TAAACCTGGTCGCTGTGTACCATT........................................................................................................................................................................ 24 0 2 0.50 1 1 0 0 0
..................................................................................TATCGTGGTCGTGGTAGTCTAGGAGTT................................................................................................................. 27 1 2 0.50 1 1 0 0 0
.........................GGCGTTAAACCTGGTCGCTGTGTACC........................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
...................................CTGGTCGCTGTGTACCATTTAGA.................................................................................................................................................................... 23 1 2 0.50 1 0 1 0 0
..................................................................................................................................................CAAATGACTCTAGACAAGTTAATGTC.................................................. 26 0 2 0.50 1 1 0 0 0
.................................ACCTGGTCGCTGTGTACCAT......................................................................................................................................................................... 20 0 2 0.50 1 0 0 1 0
...........................AGTTAAACCTGGTCGCTGTGTACCATT........................................................................................................................................................................ 27 1 2 0.50 1 1 0 0 0
.....................................................................................CGTGGTCGTGGTAGTCTAGGAGTT................................................................................................................. 24 0 2 0.50 1 1 0 0 0
..................................CCTGGTCGCTGTGTACCAT......................................................................................................................................................................... 19 0 2 0.50 1 0 1 0 0
............................................GTGTACCATTTATAATCCGTAGAG.......................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
...........................................TGTGTACCATTTATAATCCGTAGAG.......................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0
.........................GGCGTTAAACCTGGTCGCTGTGTACCATT........................................................................................................................................................................ 29 0 2 0.50 1 1 0 0 0
.........................................................................................GTCGTGGTAGTCTAGGAGTTTAC.............................................................................................................. 23 0 2 0.50 1 1 0 0 0
.....................................................................................................................................................ATGACTCTAGACAAGTTAATGTC.................................................. 23 0 2 0.50 1 1 0 0 0
.............ACCGACGACCGTGGCGTTAAACCT......................................................................................................................................................................................... 24 0 2 0.50 1 0 1 0 0
........TACTTACCGACGACCGTGGCGTT............................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0
...........................CGTTAAACCTGGTCGCTGTGTACCA.......................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0
...............................................................................................................................................................ACAAGTTATTATCTAAGTC............................................ 19 2 10 0.50 5 5 0 0 0
................................AACCTGGTCGCTGTGTACCATT........................................................................................................................................................................ 22 0 2 0.50 1 0 0 1 0
.............................TTAAACCTGGTCGCTGTGTACCA.......................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0
....................................TGGTCGCTGTGTACCATTTATA.................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0
...........................CGTTAAACCTGGTCGCTGTGTTCCA.......................................................................................................................................................................... 25 1 2 0.50 1 0 1 0 0
...............................................................................................................................................TGTCAAATGACTCTAGACAAGTTAATGT................................................... 28 0 2 0.50 1 1 0 0 0
..................................................................................................................................CTGTAGAAATGACTGTCATA........................................................................ 20 3 8 0.25 2 0 0 0 2
..................................................................................................................................CTGTAGTAATGACTGTCATAA....................................................................... 21 3 4 0.25 1 1 0 0 0
..............CCGACGACCGTGGTCTTAA............................................................................................................................................................................................. 19 2 5 0.20 1 1 0 0 0
................................................................................................................................................................................TCATTTAGTCGCCGAAGGTA.......................... 20 3 7 0.14 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:199086-199307 - dmo_1276 AGGACAAGATGAATGGCTGCTGGCACCGCAATTTGGACCAGCGACACATGGTAAATATTAGGCATCTCGAACTGGCTGGTAGCTAGCACCAGCACCATCAGATCCTCAAATGGCAGAAAGCAGGTATGTGGACATCATTATTGACAGTTTACTGAGATCTGTTCAATTACAGATTCAGTAAATCAACTGCATCCATCGGGAGAGCAGGTAAGTGGTCATCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGGACAAGATGAATGGCTGCTGGCACCGCAATTTGGACCAGCGACACATGGTAAATATTAGGCATCTCGAACTGGCTGGTAGCTAGCACCAGCACCATCAGATCCTCAAATGGCAGAAAGCAGGTATGTGGACATCATTATTGACAGTTTACTGAGATCTGTTCAATTACAGATTCAGTAAATCAACTGCATCCATCGGGAGAGCAGGTAAGTGGTCATCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................ACATCATTATTGACAGTTTACTGAGATC...............................................................28221.00423800040
................................................TGGTAAATATTAGGCATCTCGAACTGGC..................................................................................................................................................28112.00121200000
................................................TGGTAAATATTAGGCATCTCGAACTGG...................................................................................................................................................27111.00111100000
................................................TGGTAAATATTAGGCATCTCGAACTG....................................................................................................................................................2619.009900000
................................................TGGTAAATATTAGGCATCTCGAACT.....................................................................................................................................................2519.009400050
.......................................................................................................................................................................TACAGATTCAGTAAATCAACTGCA...............................2415.005500000
............................................CACATGGTAAATATTAGGCATCTCG.........................................................................................................................................................2514.004400000
...............................................................................................................................................................................................TCCATCGGGAGAGCAGGTAAGTGG.......2414.004400000
...................................................................................................................................ACATCATTATTGACAGTTTACTGAG..................................................................2524.008800000
..................................................................................................................................................................TCAATTACAGATTCAGTAAATCAACTGCA...............................2913.003300000
....................................................................................................................................CATCATTATTGACAGTTTACTGAGATC...............................................................2723.006600000
............................................CACATGGTAAATATTAGGCATCTCGAAC......................................................................................................................................................2813.003300000
..................................................................................................................................................................TCAATTACAGATTCAGTAAATCAACTGC................................2812.002100010
...................................................................................................................................ACATCATTATTGACAGTTTACTGAGA.................................................................2622.004400000
......................................................................................................................................................................TTACAGATTCAGTAAATCAACTGCA...............................2511.001100000
............................................CACATGGTAAATATTAGGCATCTCGA........................................................................................................................................................2611.001100000
...............................................................................................................................................................................................TCCATCGGGAGAGCAGGTAAGT.........2211.001100000
................................................................................................................................................................................................CCATCGGGAGAGCAGGTAAGTGG.......2311.001100000
................................................................TCTCGAACTGGCTGGTAGCTAGCACC....................................................................................................................................2611.001100000
...............................................................................................................................................................TGTTCAATTACAGATTCAGTAAATCAAC...................................2811.001000010
............................................................................TGGTAGCTAGCACCAGCACCATCAGATCT.....................................................................................................................2911.001100000
.......................................................................................................................................................................TACAGATTCAGTAAATCAACTGCATC.............................2611.001000010
............................................................................TGGTAGCTAGCACCAGCACCATCAGATCC.....................................................................................................................2911.001100000
..........................................GACACATGGTAAATATTAGGCATCTCG.........................................................................................................................................................2711.001100000
.................................................GGTAAATATTAGGCATCTCGAACTGG...................................................................................................................................................2611.001100000
............................................................................TGGTAGCTAGCACCAGCACCATCAGA........................................................................................................................2611.001100000
...................................................................................................................................................................................................TCGGGAGAGCAGGTAAGTGGA......2111.001100000
......................................................................................................................................................................................TCAACTGCATCCATCGGGAGAGC.................2311.001000010
.........................................................................................................TCAAATGGCAGAAAGCAGGTATGT.............................................................................................2411.001100000
................................................TGGTAAATATTAGGCATCTCGAACTGGCT.................................................................................................................................................2911.001100000
.............................................ACATGGTAAATATTAGGCATCTCG.........................................................................................................................................................2411.001100000
.................................................GGTAAATATTAGGCATCTCGAA.......................................................................................................................................................2211.001100000
...................................................................................................................................................................................................TCGGGAGAGCAGGTAAGTGG.......2011.001100000
.......................................................................................................................................................................TACAGATTCAGTAAATCAACTGCAT..............................2511.001100000
......................................................................................................................................................................TTACAGATTCAGTAAATCAACTGC................................2411.001000010
............................................................................TGGTAGCTAGCACCAGCACCATCAGATC......................................................................................................................2811.001100000
...................................................TAAATATTAGGCATCTCGAACTGG...................................................................................................................................................2411.001100000
........................................................................TGGCTGGTAGCTAGCACCAGCACC..............................................................................................................................2411.001100000
....................................................AAATATTAGGCATCTCGAACTG....................................................................................................................................................2211.001100000
.........................................................................................................TCAAATGGCAGAAAGCAGGTATGTGG...........................................................................................2611.001100000
.......................................................TATTAGGCATCTCGAACTGGCTGGT..............................................................................................................................................2511.001100000
..........................................................TAGGCATCTCGAACTGGCTGGTAGC...........................................................................................................................................2511.001100000
..........................................................................................................................................TATTGACAGTTTACTGAGATCTGTTCA.........................................................2720.501100000
.................................................................................................TCAGATCCTCAAATGGCAGAAAGCAGG..................................................................................................2720.501100000
...................................................................................................................................ACATCATTATTGACAGTTT........................................................................1920.501100000
.........................................................................................................................................TTATTGACAGTTTACTGAGATCTGT............................................................2520.501100000
....................................................................................................................................CATCATTATTGACAGTTTACC.....................................................................2120.501100000
...................................................................................................................................ACATCATTATTGACAGTTTACTGAGC.................................................................2620.501100000
......................................................ATATTAGGCATCTCGAACTGGCT.................................................................................................................................................2320.501000010
.......................................................................................ACCAGCACCATCAGATCCTCAAATGGCA...........................................................................................................2820.501100000
....................................................................................................................................CATCATTATTGACAGTTTACTGAGA.................................................................2520.501100000
.................................................................................................TCAGATCCTCAAATGGCAGAAAGCAG...................................................................................................2620.501100000

Generated: 05/18/2015 at 12:03 AM