ID:

dmo_1275

 Coordinate:

scaffold_6498:198950-199100 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-10.1 -10.0

Flybase annnotation

intron [Dmoj\GI14069-in]; CDS [Dmoj\GI14069-cds]; exon [dmoj_GLEANR_14118:3]; intron [Dmoj\GI14069-in]

No Repeatable elements found

mature
  1. dmo_1275  scaffold_6498:199067-199092 -
  2. scaffold_6498:345404-345429 -
  3. scaffold_6498:345488-345513 -
star

Sense Strand Reads

---------------###################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTGTTCAATTACAGATTCAGTAAATCAACTGCATCCATCGGGAGAGCAGGTAAGTGGTCATCATTATTGGCAATTTACTGAACTCTGTTCAATTACAGATTCAGCAATTTCTGTTCGTTTTTCTGTTTGTATGTCTAGGCAGAACACACATTAGTGATCTCCGCTTCTTCCCTACTCATACATGATCAGCTGACCAGCAGCTGCATGACGAGGGGAAGATAGTACGGAGATACATTTTTATTCAAACAAT
**********************************************************....................(((((.(((((......)))))))))).........***************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V056
head
 V041
embryo
 V049
head
..........................................................TCATCATTATTGGCAATTTACTGAAC....................................................................................................................................................................... 26 0 3 15.67 47 35 12 0 0 0 0
..........................................................TCATCATTATTGGCAATTTACTGAACTC..................................................................................................................................................................... 28 0 3 5.00 15 13 2 0 0 0 0
..........TACAGATTCAGTAAATCAACTGCA......................................................................................................................................................................................................................... 24 0 1 5.00 5 5 0 0 0 0 0
..................................TCCATCGGGAGAGCAGGTAAGTGG................................................................................................................................................................................................. 24 0 1 4.00 4 4 0 0 0 0 0
........................................................................................TTCAATTACAGATTCAGCAATTTCTG......................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0
..........................................................TCATCATTATTGGCAATTTACTGA......................................................................................................................................................................... 24 0 3 3.00 9 6 3 0 0 0 0
.....TCAATTACAGATTCAGTAAATCAACTGCA......................................................................................................................................................................................................................... 29 0 1 3.00 3 3 0 0 0 0 0
..........................................................TCATCATTATTGGCAATTTACTG.......................................................................................................................................................................... 23 0 3 2.67 8 7 1 0 0 0 0
..........................................................TCATCATTATTGGCAATTTACTGAACT...................................................................................................................................................................... 27 0 3 2.33 7 5 2 0 0 0 0
........................................................................................TTCAATTACAGATTCAGCAATTTCT.......................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................................TACATGATCAGCTGACCAGCAGCT................................................ 24 0 20 2.00 40 40 0 0 0 0 0
.....TCAATTACAGATTCAGTAAATCAACTGC.......................................................................................................................................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0
..TGTTCAATAATAGATTCAG...................................................................................................................................................................................................................................... 19 2 10 1.80 18 18 0 0 0 0 0
......................................................................................TGTTCAATAATAGATTCAG.................................................................................................................................................. 19 2 10 1.80 18 18 0 0 0 0 0
...........................................................CATCATTATTGGCAATTTACTGAAC....................................................................................................................................................................... 25 0 3 1.33 4 4 0 0 0 0 0
...................................CCATCGGGAGAGCAGGTAAGTGG................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TGACGAGGGGAAGATAGTACGGAG..................... 24 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................TACAGATTCAGCAATTTCTGTTCGTTT.................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
......................................TCGGGAGAGCAGGTAAGTGGA................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.........................TCAACTGCATCCATCGGGAGAGC........................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................TGTTCGTTTTTCTGTTTGTATGTCT.................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
......................................TCGGGAGAGCAGGTAAGTGG................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
......................................................................................TGTTCAATTACAGATTCAGCAATTTCTG......................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................TACAGATTCAGCAATTTCTGTTCGTT................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..TGTTCAATAATAGATTCAGTAAAA................................................................................................................................................................................................................................. 24 3 1 1.00 1 0 0 1 0 0 0
.........TTACAGATTCAGTAAATCAACTGCA......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..................................TCCATCGGGAGAGCAGGTAAGT................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..TGTTCAATTACAGATTCAGTAAATCAAC............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
..........TACAGATTCAGTAAATCAACTGCATC....................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAATTACAGATTCAGCAATTTCTGTTC...................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................TCATCATTATTGGCAATTTACTGAA........................................................................................................................................................................ 25 0 3 1.00 3 3 0 0 0 0 0
..........TACAGATTCAGTAAATCAACTGCAT........................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TCAATTACAGATTCAGCAATTTCTGTT....................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.........TTACAGATTCAGTAAATCAACTGC.......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
....................................................................................TCTGTTCAATTACAGATTCAGCAAT.............................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TCAATTACAGAGTCAGCAATTTCTGT........................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................TACAGATTCAGCAATTTCTGTTCG..................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TCAATTACAGATTCAGCAATTTCTGT........................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..........................................................TCATCATTATTGGCAATTTACTGAACTCT.................................................................................................................................................................... 29 0 3 0.67 2 2 0 0 0 0 0
...........................................................CATCATTATTGGCAATTTACTGAACTCTG................................................................................................................................................................... 29 0 3 0.67 2 2 0 0 0 0 0
...............................................................ATTATTGGCAATTTACTGAAC....................................................................................................................................................................... 21 0 3 0.67 2 2 0 0 0 0 0
................................................................................................................................................................TCCGCTTCTTCCCTACTCATACATGATC............................................................... 28 0 18 0.56 10 10 0 0 0 0 0
........................................................................................................................................................TAGTGATCTCCGCTTCTTCCCTACTA......................................................................... 26 1 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................CAGAACACACATTAGTGATCTCCGCTTC................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................CTAGGCAGAACACACATTAGTGATC........................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................TAGTGATCTCCGCTTCTTCCCTAC........................................................................... 24 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................TAGTGATCTCCGCTTCTTCCCTA............................................................................ 23 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................TAGTGATCTCCGCTTCTTCCCTACTCA........................................................................ 27 0 2 0.50 1 1 0 0 0 0 0
.........................................................GTCATCATTATTGGCAATTTACTGAACT...................................................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0
............................................................ATCATTATTGGCAATTTACTGAAC....................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
.................................................................................................................................................CACACATTAGTGATCTCCGCTTCTTCCC.............................................................................. 28 0 3 0.33 1 1 0 0 0 0 0
...........................................................CATCATTATTGGCAATTTACTGAACT...................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
..........................................................TCATCATTATTGGCAATTTACT........................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
.......................................CGGGAGTGTGGGTAAGTGGTC............................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0
...................................................................................................................................................CACATTAGTGATCTCCGCTTCTTCCC.............................................................................. 26 0 3 0.33 1 1 0 0 0 0 0
..........................................................TCATCATTATTGTCAATTTACTGAAC....................................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0
..........................................................TCATCATTATTGCCAATTTACTGAACTCT.................................................................................................................................................................... 29 1 3 0.33 1 1 0 0 0 0 0
...........................................................CATCATTATTGGCAATTTACTGAACTC..................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0
.............................................................TCATTATTGGCAATTTACTGAACTCT.................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
...............................................................ATTATTGGCAATTTACTGAACT...................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
..........................CAACTGCAACCATCGGGACA............................................................................................................................................................................................................. 20 2 3 0.33 1 0 0 1 0 0 0
.......................................................TGGTCATCATTATTGGCAATTTACTGAAC....................................................................................................................................................................... 29 0 3 0.33 1 1 0 0 0 0 0
...................................................................TTGGCAATTTACTGAACTCTGTTCAAC............................................................................................................................................................. 27 1 3 0.33 1 0 1 0 0 0 0
................................................................................................................................................................TCCGCTTCTTCCCTACTCATACATGA................................................................. 26 0 18 0.28 5 5 0 0 0 0 0
...........................................................CACCATTATTGGCAATTTACTGA......................................................................................................................................................................... 23 1 4 0.25 1 0 1 0 0 0 0
...............................................................................................................................................AACACACATTAGTGATCTCCGCTTC................................................................................... 25 0 4 0.25 1 0 1 0 0 0 0
................................................................................................................................................ACACACATTAGTGATCTCCGCTTC................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0
............................................................ATCATTATTGGCAATTTACTGA......................................................................................................................................................................... 22 0 4 0.25 1 0 1 0 0 0 0
..................................................................................................................................................................................ATACATGATCAGCTGACCAGC.................................................... 21 0 20 0.25 5 4 0 0 1 0 0
................................................................................................................................................................TCCGCTTCTTCCCTACTCATACA.................................................................... 23 0 18 0.22 4 4 0 0 0 0 0
.............................................................................................................................................................................TACTCATACATGATCAGCTGACCAGCAGC................................................. 29 0 19 0.21 4 3 1 0 0 0 0
..................................................................................................................................................................................ATACATGATCAGCTGACCAGCAGC................................................. 24 0 20 0.20 4 0 4 0 0 0 0
................................................................................................................TGTTCGGTTTTATCTTTGTATG..................................................................................................................... 22 3 6 0.17 1 0 0 0 0 1 0
...................................................................................................................................................................................TACTTGATCAGCTGACCAGCAGCTGCA............................................. 27 1 20 0.15 3 0 3 0 0 0 0
................................................................................................................................................................TCCGCTTCTTCCCTACTCATACATGATCA.............................................................. 29 0 18 0.11 2 2 0 0 0 0 0
................................................................................................................................................................TCCGCTTCTTCCCTACTCATACATG.................................................................. 25 0 18 0.11 2 1 1 0 0 0 0
................................................................................................................................................................TGCGCTTCTTCCCTACTCATACATGATC............................................................... 28 1 18 0.11 2 0 2 0 0 0 0
...................................................................................................................................................................................TGCATGATCAGCTGACCAGCAGCTGCA............................................. 27 1 20 0.10 2 0 2 0 0 0 0
....................................................................................GCTGTTCAATAATAGATTCAG.................................................................................................................................................. 21 3 11 0.09 1 1 0 0 0 0 0
GCTGTTCAATAATAGATTCAG...................................................................................................................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0
....................................................................................................................................................................................................AGCAGCTGCATGACGAGGGGAAG................................ 23 0 15 0.07 1 0 0 0 0 0 1
.CTGTTCAATAATAGATTC........................................................................................................................................................................................................................................ 18 2 16 0.06 1 1 0 0 0 0 0
.....................................................................................CTGTTCAATAATAGATTC.................................................................................................................................................... 18 2 16 0.06 1 1 0 0 0 0 0
.................................................................................................................................GTATGTCTAGGCAGAACACACATT.................................................................................................. 24 0 18 0.06 1 1 0 0 0 0 0
................................................................................................................................................................TCCGCTTCTTCCCTACTCATAC..................................................................... 22 0 18 0.06 1 0 1 0 0 0 0
..................................................................................................................................................................................................................................GGAGATACATTTTTATTCAAACAA. 24 0 19 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................................................................GGAAGATAGTACGGAGATACATTTTTA.......... 27 0 19 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................AGTACGGAGATACATTTTTATTCAAACAA. 29 0 19 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................GCTTCTTCCCTACTCATACATGATC............................................................... 25 0 19 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................CGCTTCTTCCCTACTCATACATG.................................................................. 23 0 19 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................AGTACGGAGATACATTTTTATTCAAACA.. 28 0 19 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................CCTACTCATACATGATCAGCTGACCAG..................................................... 27 0 19 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................TTCTTCCCTACTCATACATGATCAGCTG.......................................................... 28 0 19 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................TGCTTCCCTACTCATACATGATCAGCTG.......................................................... 28 1 19 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................GAAGATAGTACGGAGATACATTT............. 23 0 19 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................CTACTCATACATGATCAGCTG.......................................................... 21 0 19 0.05 1 0 0 0 0 1 0
.................................................................................................................................................................CCGCTTCTTCCCTACTCATACATGA................................................................. 25 0 19 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................CTTCCCTACTCATACATGATCAGC............................................................ 24 0 19 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................TACTCATACATGATCGGCTGA......................................................... 21 1 19 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................TCCCTACTCATACATGATCAGCTGACC....................................................... 27 0 19 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................TCCCTACTCATACATGATCAGCTGACCAG..................................................... 29 0 19 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................TACTCATACATGATCAGCTGA......................................................... 21 0 19 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................TCCCTACTCATACATGATCAGCTGAC........................................................ 26 0 19 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................GCTTCTTCCCTACTCATACAT................................................................... 21 0 19 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................ACTCATACATGATCAGCTGACC....................................................... 22 0 19 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................................CGCATACATGATCAGCTGACCAGCAGC................................................. 27 1 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................TAAATGATAAGCTGACCAGCAGC................................................. 23 2 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................................ATGATCAGCTGACCAGCAGC................................................. 20 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................TCATACATGATCAGCTGACCAG..................................................... 22 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................TGTTTGTATGTCTAGGCAGAACACACA.................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................TTTCTGTTTGTATGTCTAGGCAGA........................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................TCTGTTTGTATGTCTAGGC.............................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................................................TAGTACGGAGATACATAATCAT......... 22 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AGACAAGTTAATGTCTAAGTCATTTAGTTGACGTAGGTAGCCCTCTCGTCCATTCACCAGTAGTAATAACCGTTAAATGACTTGAGACAAGTTAATGTCTAAGTCGTTAAAGACAAGCAAAAAGACAAACATACAGATCCGTCTTGTGTGTAATCACTAGAGGCGAAGAAGGGATGAGTATGTACTAGTCGACTGGTCGTCGACGTACTGCTCCCCTTCTATCATGCCTCTATGTAAAAATAAGTTTGTTA
*****************************************************************************************************************************************....................(((((.(((((......)))))))))).........********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V049
head
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAATAAGTTT.... 25 0 19 3.84 73 57 13 1 2 0
..........................................CTCTCGTCCATTCACCAGTAGTAATA....................................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0
................................................................................................................................................TGTGTGTAATCACTAGAGGCGAAGAA................................................................................. 26 0 4 2.00 8 1 1 6 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAATAAGTTTGT.. 27 0 19 1.95 37 30 5 1 1 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAATAAGTT..... 24 0 19 1.05 20 15 5 0 0 0
...............................................GTCCATTCACCAGTAGTAATA....................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................AGTCGACTGGTCGTCGACGTACTGCT....................................... 26 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................................CGTACTGCTCCCCTTCTATCATGCCTCT.................... 28 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................CGACGTACTGCTCCCCTTCTATCATG......................... 26 0 1 1.00 1 0 0 0 1 0
................................................................................................................................................................................................CTGGTCGTCGACGTACTGCTCCCCT.................................. 25 0 1 1.00 1 0 0 1 0 0
..........................................................................................................................................................................................................CCGTACTGCTCCCCTTCTAT............................. 20 1 1 1.00 1 0 1 0 0 0
....................................................................................................................................ACAGATCCGTCTTGTGTGTAATCACT............................................................................................. 26 0 2 1.00 2 2 0 0 0 0
.....................................................................................................................................................................................................CGTCGACGTACTGCTCCCCTTCTAT............................. 25 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................TCGACTGGTCGTCGACGTACTGCT....................................... 24 0 1 1.00 1 1 0 0 0 0
............................................CTCGTCCATTCACCAGTAGTAATA....................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................CGACGTACTGCTCCCCTTCTATCATGCGT...................... 29 1 1 1.00 1 0 1 0 0 0
....................CATTTAGTTGACGTAGGTAGCCCT............................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................CTTGTGTGTAATCACTAGAGGCGAAGAA................................................................................. 28 0 4 0.75 3 0 2 1 0 0
...............................................................................................................................................TTGTGTGTAATCACTAGAGGCGAAGAA................................................................................. 27 0 4 0.75 3 2 0 1 0 0
..................................................................................................................................................TGTGTAATCACTAGAGGCGAAGAA................................................................................. 24 0 4 0.75 3 0 0 3 0 0
.............................................................................CGACTTGAGACAAGTTAATGTCTAAGT................................................................................................................................................... 27 1 3 0.67 2 2 0 0 0 0
.............................................................................TGACTTGAGACAAGTTAATGTC........................................................................................................................................................ 22 0 3 0.67 2 2 0 0 0 0
....................................................................................................................................ACAGATCCGTCTTGTGTGTAATCA............................................................................................... 24 0 2 0.50 1 1 0 0 0 0
.................................................................................................................................................GTGTGTAATCACTAGAGGCGAAGAA................................................................................. 25 0 4 0.50 2 2 0 0 0 0
.................................................................................................................................CATACAGATCCGTCTTGTGTGTAATC................................................................................................ 26 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................AGATCCGTCTTGTGTGTAATCACT............................................................................................. 24 0 2 0.50 1 1 0 0 0 0
..ACAAGTTATTATCTAAGTC...................................................................................................................................................................................................................................... 19 2 10 0.50 5 5 0 0 0 0
......................................................................................ACAAGTTATTATCTAAGTC.................................................................................................................................................. 19 2 10 0.50 5 5 0 0 0 0
.............................................................................TGACTTGAGACAAGTTAATGTCTAAGT................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
.....................................................................CCGTTAAATGACTTGAGACA.................................................................................................................................................................. 20 0 3 0.33 1 0 0 0 1 0
............................................................................ATGACTTGAGACAAGTTAATGTC........................................................................................................................................................ 23 0 3 0.33 1 0 1 0 0 0
...............................................................................................................................................................................................................................ATGCCTCTATGTAAAAATAAGTTT.... 24 0 19 0.32 6 6 0 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAATAAGTTTG... 26 0 19 0.32 6 6 0 0 0 0
....................................................................................................................................................................GAAGAAGGGATGAGTATGTACTAGT.............................................................. 25 0 19 0.26 5 4 0 1 0 0
.................................................................................................................................................GTGTGTAATCACTAGAGGCGAAGA.................................................................................. 24 0 4 0.25 1 1 0 0 0 0
..............................................................................................................................................CTTGTGTGTAATCACTAGAGGCGAAGA.................................................................................. 27 0 4 0.25 1 0 0 1 0 0
................................................................................................................................................GGTGTGTAATCACTAGAGGCGAAGAA................................................................................. 26 1 4 0.25 1 0 0 1 0 0
......................................................................................................................................................................AGAAGGGATGAGTATGTACTAGT.............................................................. 23 0 19 0.21 4 4 0 0 0 0
................................................................................................................................................................................................................................TGCCTCTATGTAAAAATAAGTTT.... 23 0 19 0.21 4 3 1 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAATAAGTTTGTT. 28 0 19 0.21 4 2 1 1 0 0
...................................................................................................................................................................CGAAGAAGGGATGAGTATGTACTAGT.............................................................. 26 0 19 0.21 4 3 1 0 0 0
..............................................................................................................................................................................TGAGTATGTACTAGTCGACTGGTCGT................................................... 26 0 19 0.16 3 3 0 0 0 0
..........................................................................................................................................................................................................................CTATCATGCCTCTATGTAAAAATAAGTT..... 28 0 19 0.16 3 1 2 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAATAAGTTTTT.. 27 1 19 0.16 3 0 3 0 0 0
.................................................................................................................................................................................................................GCTCCCCTTCTATCATGCCTCT.................... 22 0 20 0.15 3 2 1 0 0 0
...................TCATTTAGTCGCCGAAGGTA.................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0
...............................................................................................................................................................GAGGCGAAGAAGGGATGAGTATGTACT................................................................. 27 0 18 0.11 2 2 0 0 0 0
.............................................................................................................................................................................................................................TCATGCCTCTATGTAAAAATAAGTTT.... 26 0 19 0.11 2 2 0 0 0 0
.................................................................................................................................................................GGCGAAGAAGGGATGAGTATGTAC.................................................................. 24 0 19 0.11 2 2 0 0 0 0
....................................................................................................................................................................................................................CCCCTTCTATCATGCCTCTATGTAAAAAT.......... 29 0 19 0.11 2 1 1 0 0 0
.................................................................................................................................................................................................................................GCCTCTATGTAAAAATAAGTT..... 21 0 19 0.11 2 2 0 0 0 0
............................................................................................................................................................................................................................ATCATGCCTCTATGTAAAAATAAGTTT.... 27 0 19 0.11 2 2 0 0 0 0
.......................................................................................................................................................................GAAGGGATGAGTATGTACTAGT.............................................................. 22 0 19 0.11 2 1 0 1 0 0
.............................................................................................................................................................................................................................TCATGCCTCTATGTAAAAATAAGTTTGT.. 28 0 19 0.11 2 2 0 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAATAAG....... 22 0 19 0.11 2 2 0 0 0 0
............................................................................................................................................................................................................................ATCATGCCTCTATGTAAAAATAAGTT..... 26 0 19 0.11 2 2 0 0 0 0
..........................................................................................................................................................................GGGATGAGTATGTACTAGT.............................................................. 19 0 19 0.11 2 2 0 0 0 0
....................................................................................................................................................................GAAGAAGGGATGAGTATGTACT................................................................. 22 0 19 0.11 2 2 0 0 0 0
...............................................................................................................................................................................................................................ATGCCTCTATGTAAAAATAAGTTTGT.. 26 0 19 0.11 2 1 1 0 0 0
.................................................................................................................................................................GGCGAAGAAGGGATGAGTATGTA................................................................... 23 0 19 0.11 2 1 0 0 1 0
................................................................................................................................................................................................................................TGCCTCTATGTAAAAATAAGTTTGT.. 25 0 19 0.11 2 2 0 0 0 0
................................................................................................................................................TGTGTGTAATCACTAGAGG........................................................................................ 19 0 20 0.10 2 0 0 2 0 0
.....................................................................................................................................................................................GTACTAGTCGACTGGTCGTCGACGT............................................. 25 0 20 0.10 2 2 0 0 0 0
..........................................................................................................................AGACAAACATACAGATCCGTCTTG......................................................................................................... 24 0 20 0.10 2 2 0 0 0 0
...................................................ATTCGCCAGTAGTCATTAC..................................................................................................................................................................................... 19 3 13 0.08 1 1 0 0 0 0
....................................................................................................................................................................................................TCGTCGACGTACTGCTCCCCTTCT............................... 24 0 15 0.07 1 0 1 0 0 0
..............................................................................................................................................................AGAGGCGAAGAAGGGATGAGTATGGACT................................................................. 28 1 18 0.06 1 0 1 0 0 0
...............................................................................................................................................................GAGGCGAAGAAGGGATGAGTATGT.................................................................... 24 0 18 0.06 1 1 0 0 0 0
...........................................................................................................................................................................GGATGAGTATGTACTAGTCGACT......................................................... 23 0 19 0.05 1 0 0 1 0 0
.............................................................................................................................................................................................................................ACATGCCTCTATGTAAAAATAAGTTTGT.. 28 1 19 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................................CCATGCCTCTATGTAAAAATATGTT..... 25 2 19 0.05 1 0 1 0 0 0
........................................................................................................................................................................AAGGGATGAGTATGTACTAGT.............................................................. 21 0 19 0.05 1 1 0 0 0 0
..........................................................................................................................................................................GGGATGAGTATGTACTAGTCGACTGGT...................................................... 27 0 19 0.05 1 0 0 1 0 0
........................................................................................................................................................................................................................CTCTATCATGCCTCTATGTAAAAAT.......... 25 1 19 0.05 1 1 0 0 0 0
.....................................................................................................................................................................AAGAAGGGATGAGTATGTACTAGT.............................................................. 24 0 19 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................................CTATCATGCCTCTATGTAAAAATAAGTTT.... 29 0 19 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTACGTAAAAATAAGTT..... 24 1 19 0.05 1 0 0 0 1 0
.......................................................................................................................................................................................................................CTTCTATCATGCCTCTATGTAAAAAT.......... 26 0 19 0.05 1 1 0 0 0 0
...................................................................................................................................................................CGAAGAAGGGATGAGTATGTAC.................................................................. 22 0 19 0.05 1 0 1 0 0 0
................................................................................................................................................................................................................................TGCCTCTATGTAAAAATAAGTT..... 22 0 19 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................TATCATGCCTCTATGTAAAAAT.......... 22 0 19 0.05 1 0 0 1 0 0
....................................................................................................................................................................GAAGAAGGGATGAGTATGTACTA................................................................ 23 0 19 0.05 1 1 0 0 0 0
...................................................................................................................................................................CGAAGAAGGGATGAGTATGTA................................................................... 21 0 19 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................................CCCCTTCTATCATGCCTCTATGTAATAAT.......... 29 1 19 0.05 1 0 1 0 0 0
.......................................................................................................................................................................GAAGGGATGAGTATGTACTAGTCGA........................................................... 25 0 19 0.05 1 0 1 0 0 0
...........................................................................................................................................................................GGATGAGTATGTACTAGTCGACTGGT...................................................... 26 0 19 0.05 1 0 0 0 1 0
......................................................................................................................................................................................................................CCTTCTATCATGCCTCTATGTAAAAAT.......... 27 0 19 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................................TCATGCCTCTATGTAAAAATAAG....... 23 0 19 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................TATCATGCCTCTATGTAAAAATAAGT...... 26 0 19 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAGAATAAGTTTGT.. 27 1 19 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................................TCATGCCTCTATGTAAAAATAAGTGT.... 26 1 19 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................................................TATCATGCCTCTATGTAAAAATAAGTTT.... 28 0 19 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAATAAGCTTGTT. 28 1 19 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................................CCCCTTCTATCATGCCTCTATGTAA.............. 25 0 19 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAATAATAAGTTTGT.. 27 1 19 0.05 1 1 0 0 0 0
..................................................................................................................................................................GCGAAGAAGGGATGAGTATGTACTAGT.............................................................. 27 0 19 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................................CTATCATGCCTCTATGTAAAAATAAGT...... 27 0 19 0.05 1 0 1 0 0 0
............................................................................................................................................................................GATGAGTATGTACTAGTCGACTGGT...................................................... 25 0 19 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................................GCCTCTATGTAAAAATAAGTTTGT.. 24 0 19 0.05 1 1 0 0 0 0
.................................................................................................................................................................TGCGAAGAAGGGATGAGTATGTACTAG............................................................... 27 1 19 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................................TCATGCCTCTATGTAAAA............ 18 0 19 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAATATGGT..... 24 2 19 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................................................CCTATCATGCCTCTATGTAGAAAT.......... 24 2 19 0.05 1 0 1 0 0 0
.............................................................................................................................................................................ATGAGTATGTACTAGTCGACTGGTCGT................................................... 27 0 19 0.05 1 1 0 0 0 0
.................................................................................................................................................................GGCGAAGAAGGGATGAGTATGTACT................................................................. 25 0 19 0.05 1 1 0 0 0 0
........................................................................................................................................................................AAGGGATGAGTATGTACTAG............................................................... 20 0 19 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAAAAAGTT..... 24 1 19 0.05 1 0 1 0 0 0
.......................................................................................................................................................................GAAGGGATGAGTATGTACTAG............................................................... 21 0 19 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................................................ACGCCTCTATGTAAAAATAAG....... 21 1 19 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................................CCTCTATGTAAAAATAAGTTT.... 21 0 19 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGTAAAAATAAGTGT.... 25 1 19 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................................GCCTCTTTGTAAAAATAAGTTT.... 22 1 19 0.05 1 0 0 1 0 0
.............................................................................................................................................................................................................................TCATGCCTCTATGTAAAAATAAGTT..... 25 0 19 0.05 1 1 0 0 0 0
...................................................................................................................................................................CGAAGAAGGGATGAGTATGTACT................................................................. 23 0 19 0.05 1 0 1 0 0 0
.........................................................................................................................AAGACAAACATACAGATCCGTCTTGTGT...................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................CTTGTGTGTAATCACTAGAGGCG...................................................................................... 23 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................CATGCCTCTATGAAAATATAAGTTA.... 25 3 20 0.05 1 1 0 0 0 0
................................................................................................................................................TGTGTGTAATCACTAGAGGCGTAGAA................................................................................. 26 1 20 0.05 1 0 0 1 0 0
................................................................................................................................................TGTGTGTAAGCACTAGAGGAGAAGAA................................................................................. 26 2 20 0.05 1 0 0 0 1 0
.........................................................................................................................AAGACAAACATACAGATCCGTCTTG......................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................TGTGTGTAATCACTAGAGGC....................................................................................... 20 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................TGTGTGTAAGCACTAGAGGCGAAGAA................................................................................. 26 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................GTATGTACTAGTCGACTGGTCGT................................................... 23 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................CGTCGACGTACTGCTCCCCTT................................. 21 0 20 0.05 1 0 0 0 0 1
......................................................................................................................................................................................................GTCGACGTACTGCTCCCCTT................................. 20 0 20 0.05 1 1 0 0 0 0
............................................................................................................................ACAAACATACAGATCCGTCTTGTG....................................................................................................... 24 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:198900-199150 - dmo_1275 TCTGTTCAATTACAGATTCAGTAAATCAACTGCATCCATCGGGAGAGCAGGTAAGTGGTCATCATTATTGGCAATTTACTGAACTCTGTTCAATTACAGATTCAGCAATTTCTGTTCGTTTTTCTGTTTGTATGTCTAGGCAGAACACACATTAGTGATCTCCGCTTCTTCCCTACTCATACATGATCAGCTGACCAGCAGCTGCATGACGAGGGGAAGATAGTACGGAGATACATTTTTATTCAAACAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCTGTTCAATTACAGATTCAGTAAATCAACTGCATCCATCGGGAGAGCAGGTAAGTGGTCATCATTATTGGCAATTTACTGAACTCTGTTCAATTACAGATTCAGCAATTTCTGTTCGTTTTTCTGTTTGTATGTCTAGGCAGAACACACATTAGTGATCTCCGCTTCTTCCCTACTCATACATGATCAGCTGACCAGCAGCTGCATGACGAGGGGAAGATAGTACGGAGATACATTTTTATTCAAACAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................TCATCATTATTGGCAATTTACTGAAC.......................................................................................................................................................................26315.674735000120
..........................................................TCATCATTATTGGCAATTTACTGAACTC.....................................................................................................................................................................2835.00151300020
..........TACAGATTCAGTAAATCAACTGCA.........................................................................................................................................................................................................................2415.005500000
..................................TCCATCGGGAGAGCAGGTAAGTGG.................................................................................................................................................................................................2414.004400000
........................................................................................TTCAATTACAGATTCAGCAATTTCTG.........................................................................................................................................2613.003300000
..........................................................TCATCATTATTGGCAATTTACTGA.........................................................................................................................................................................2433.009600030
.....TCAATTACAGATTCAGTAAATCAACTGCA.........................................................................................................................................................................................................................2913.003300000
..........................................................TCATCATTATTGGCAATTTACTG..........................................................................................................................................................................2332.678700010
..........................................................TCATCATTATTGGCAATTTACTGAACT......................................................................................................................................................................2732.337500020
........................................................................................TTCAATTACAGATTCAGCAATTTCT..........................................................................................................................................2512.002200000
...................................................................................................................................................................................TACATGATCAGCTGACCAGCAGCT................................................24202.00404000000
.....TCAATTACAGATTCAGTAAATCAACTGC..........................................................................................................................................................................................................................2812.002100010
...........................................................CATCATTATTGGCAATTTACTGAAC.......................................................................................................................................................................2531.334400000
...................................CCATCGGGAGAGCAGGTAAGTGG.................................................................................................................................................................................................2311.001100000
..............................................................................................................................................................................................................TGACGAGGGGAAGATAGTACGGAG.....................2411.001100000
..............................................................................................TACAGATTCAGCAATTTCTGTTCGTTT..................................................................................................................................2711.001100000
......................................TCGGGAGAGCAGGTAAGTGGA................................................................................................................................................................................................2111.001100000
.........................TCAACTGCATCCATCGGGAGAGC...........................................................................................................................................................................................................2311.001000010
................................................................................................................TGTTCGTTTTTCTGTTTGTATGTCT..................................................................................................................2511.001100000
......................................TCGGGAGAGCAGGTAAGTGG.................................................................................................................................................................................................2011.001100000
......................................................................................TGTTCAATTACAGATTCAGCAATTTCTG.........................................................................................................................................2811.001100000
..............................................................................................TACAGATTCAGCAATTTCTGTTCGTT...................................................................................................................................2611.001100000
.........TTACAGATTCAGTAAATCAACTGCA.........................................................................................................................................................................................................................2511.001100000
..................................TCCATCGGGAGAGCAGGTAAGT...................................................................................................................................................................................................2211.001100000
..TGTTCAATTACAGATTCAGTAAATCAAC.............................................................................................................................................................................................................................2811.001000010
..........TACAGATTCAGTAAATCAACTGCATC.......................................................................................................................................................................................................................2611.001000010
..........................................................................................CAATTACAGATTCAGCAATTTCTGTTC......................................................................................................................................2711.001100000
..........................................................TCATCATTATTGGCAATTTACTGAA........................................................................................................................................................................2531.003300000
..........TACAGATTCAGTAAATCAACTGCAT........................................................................................................................................................................................................................2511.001100000
.........................................................................................TCAATTACAGATTCAGCAATTTCTGTT.......................................................................................................................................2711.001000010
.........TTACAGATTCAGTAAATCAACTGC..........................................................................................................................................................................................................................2411.001000010
....................................................................................TCTGTTCAATTACAGATTCAGCAAT..............................................................................................................................................2511.001100000
..............................................................................................TACAGATTCAGCAATTTCTGTTCG.....................................................................................................................................2411.001100000
.........................................................................................TCAATTACAGATTCAGCAATTTCTGT........................................................................................................................................2611.001100000
..........................................................TCATCATTATTGGCAATTTACTGAACTCT....................................................................................................................................................................2930.672200000
...........................................................CATCATTATTGGCAATTTACTGAACTCTG...................................................................................................................................................................2930.672200000
...............................................................ATTATTGGCAATTTACTGAAC.......................................................................................................................................................................2130.672200000
................................................................................................................................................................TCCGCTTCTTCCCTACTCATACATGATC...............................................................28180.56101000000
........................................................................................................................................................TAGTGATCTCCGCTTCTTCCCTACTA.........................................................................2620.501100000
............................................................................................................................................CAGAACACACATTAGTGATCTCCGCTTC...................................................................................2820.501100000
.......................................................................................................................................CTAGGCAGAACACACATTAGTGATC...........................................................................................2520.501100000
........................................................................................................................................................TAGTGATCTCCGCTTCTTCCCTAC...........................................................................2420.501100000
........................................................................................................................................................TAGTGATCTCCGCTTCTTCCCTA............................................................................2320.501100000
........................................................................................................................................................TAGTGATCTCCGCTTCTTCCCTACTCA........................................................................2720.501100000
.........................................................GTCATCATTATTGGCAATTTACTGAACT......................................................................................................................................................................2830.331100000
............................................................ATCATTATTGGCAATTTACTGAAC.......................................................................................................................................................................2430.331100000
.................................................................................................................................................CACACATTAGTGATCTCCGCTTCTTCCC..............................................................................2830.331100000
...........................................................CATCATTATTGGCAATTTACTGAACT......................................................................................................................................................................2630.331100000
..........................................................TCATCATTATTGGCAATTTACT...........................................................................................................................................................................2230.331100000
...................................................................................................................................................CACATTAGTGATCTCCGCTTCTTCCC..............................................................................2630.331100000
...........................................................CATCATTATTGGCAATTTACTGAACTC.....................................................................................................................................................................2730.331100000
.............................................................TCATTATTGGCAATTTACTGAACTCT....................................................................................................................................................................2630.331100000
...............................................................ATTATTGGCAATTTACTGAACT......................................................................................................................................................................2230.331100000
.......................................................TGGTCATCATTATTGGCAATTTACTGAAC.......................................................................................................................................................................2930.331100000
...................................................................TTGGCAATTTACTGAACTCTGTTCAAC.............................................................................................................................................................2730.331000010
................................................................................................................................................................TCCGCTTCTTCCCTACTCATACATGA.................................................................26180.285500000
...............................................................................................................................................AACACACATTAGTGATCTCCGCTTC...................................................................................2540.251000010
................................................................................................................................................ACACACATTAGTGATCTCCGCTTC...................................................................................2440.251100000
............................................................ATCATTATTGGCAATTTACTGA.........................................................................................................................................................................2240.251000010
..................................................................................................................................................................................ATACATGATCAGCTGACCAGC....................................................21200.255400100
................................................................................................................................................................TCCGCTTCTTCCCTACTCATACA....................................................................23180.224400000
.............................................................................................................................................................................TACTCATACATGATCAGCTGACCAGCAGC.................................................29190.214300010
..................................................................................................................................................................................ATACATGATCAGCTGACCAGCAGC.................................................24200.204000040
................................................................................................................................................................TCCGCTTCTTCCCTACTCATACATGATCA..............................................................29180.112200000
................................................................................................................................................................TCCGCTTCTTCCCTACTCATACATG..................................................................25180.112100010
....................................................................................................................................................................................................AGCAGCTGCATGACGAGGGGAAG................................23150.071001000
.................................................................................................................................GTATGTCTAGGCAGAACACACATT..................................................................................................24180.061100000
................................................................................................................................................................TCCGCTTCTTCCCTACTCATAC.....................................................................22180.061000010
..................................................................................................................................................................................................................................GGAGATACATTTTTATTCAAACAA.24190.051000010
......................................................................................................................................................................................................................GGAAGATAGTACGGAGATACATTTTTA..........27190.051100000
.............................................................................................................................................................................................................................AGTACGGAGATACATTTTTATTCAAACAA.29190.051100000
...................................................................................................................................................................GCTTCTTCCCTACTCATACATGATC...............................................................25190.051100000
..................................................................................................................................................................CGCTTCTTCCCTACTCATACATG..................................................................23190.051100000
.............................................................................................................................................................................................................................AGTACGGAGATACATTTTTATTCAAACA..28190.051100000
...........................................................................................................................................................................CCTACTCATACATGATCAGCTGACCAG.....................................................27190.051100000
.....................................................................................................................................................................TTCTTCCCTACTCATACATGATCAGCTG..........................................................28190.051100000
.......................................................................................................................................................................................................................GAAGATAGTACGGAGATACATTT.............23190.051100000
............................................................................................................................................................................CTACTCATACATGATCAGCTG..........................................................21190.051010000
.................................................................................................................................................................CCGCTTCTTCCCTACTCATACATGA.................................................................25190.051100000
.......................................................................................................................................................................CTTCCCTACTCATACATGATCAGC............................................................24190.051100000
.........................................................................................................................................................................TCCCTACTCATACATGATCAGCTGACC.......................................................27190.051100000
.........................................................................................................................................................................TCCCTACTCATACATGATCAGCTGACCAG.....................................................29190.051100000
.............................................................................................................................................................................TACTCATACATGATCAGCTGA.........................................................21190.051100000
.........................................................................................................................................................................TCCCTACTCATACATGATCAGCTGAC........................................................26190.051100000
...................................................................................................................................................................GCTTCTTCCCTACTCATACAT...................................................................21190.051100000
..............................................................................................................................................................................ACTCATACATGATCAGCTGACC.......................................................22190.051000010
......................................................................................................................................................................................ATGATCAGCTGACCAGCAGC.................................................20200.051100000
................................................................................................................................................................................TCATACATGATCAGCTGACCAG.....................................................22200.051100000
............................................................................................................................TGTTTGTATGTCTAGGCAGAACACACA....................................................................................................27200.051100000
........................................................................................................................TTTCTGTTTGTATGTCTAGGCAGA...........................................................................................................24200.051100000
..........................................................................................................................TCTGTTTGTATGTCTAGGC..............................................................................................................19200.051100000

Generated: 05/18/2015 at 12:03 AM