ID:

dmo_1268

 Coordinate:

scaffold_6497:226240-226390 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-30.7 -30.6 -30.6

Flybase annnotation

exon [dmoj_GLEANR_6338:2]; CDS [Dmoj\GI21396-cds]; intron [Dmoj\GI21396-in]

Repeatable elements

NameClassFamilyStrand
OSVALDO_I-intLTRGypsy+
mature
  1. scaffold_68:2769-2790 +
  2. scaffold_413:8079-8100 +
  3. scaffold_490:1215-1236 +
  4. scaffold_2144:4475-4496 +
  5. scaffold_2342:1602-1623 +
  6. scaffold_3725:1908-1929 +
  7. scaffold_4034:1450-1471 +
  8. scaffold_4315:17087-17108 +
  9. scaffold_5457:3202-3223 +
  10. scaffold_5862:2792-2813 +
  11. scaffold_6090:1345-1366 +
  12. scaffold_6111:32495-32516 +
  13. scaffold_6327:81581-81602 +
  14. scaffold_6428:7260-7281 +
  15. dmo_1268  scaffold_6497:226241-226262 +
  16. scaffold_6501:76736-76757 +
  17. scaffold_6540:91882-91903 +
  18. scaffold_6541:555118-555139 +
  19. scaffold_6541:849026-849047 +
  20. scaffold_6680:24590110-24590131 +
  21. scaffold_680:396-417 +
  22. scaffold_3894:803-824 +
  23. scaffold_3894:6737-6758 +
  24. scaffold_5445:3320-3341 +
  25. scaffold_6541:137105-137126 +
  26. scaffold_6541:139829-139850 +
  27. scaffold_1948:818-839 +
  28. scaffold_5918:2347-2368 +
  29. scaffold_6434:163-184 +
  30. scaffold_6496:26596840-26596861 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTGGCCGCCCCACGGGTGCCAAAGCCACCGGGGACTGCAGAACCAACAGGTGAGTTGTGCAGGAGCGTCCGGCGTGGGCAGAGGCAGCGGCGGCCCATCATGTATGCGGGGCATGCAGTCGGCATGTGGCAGCTTGCTTGGAGAGTGTGGCTACAGACGCCTGCCACGCAGATGGCTCCACCGGCTGTGGGTCTTCAGGTGTCGGAAAAGCTTGTCAACCGATCCTCGCGCAATGCCACCGGGGGCTGCA
***************************************************........((....((.((((.....((((..(((.((.((((((.....(((((((...)))))))...))).))).)).)))))))))))..))...))*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
...................................................TGAGTTGTGCAGGAGCGTCCGG.................................................................................................................................................................................. 22 0 20 3.60 72 63 4 0 5 0
............................................CAACAGGTGAGTTGTGCAGGAGC........................................................................................................................................................................................ 23 0 20 2.65 53 53 0 0 0 0
......................................................................................................................................................................................................................GTCAACCGATCCTCGCGCAATGC.............. 23 0 1 2.00 2 1 1 0 0 0
..........................................................................................................................................................................................................................ACCGATCCTCGCGCAATGCCACCG......... 24 0 1 2.00 2 2 0 0 0 0
............................................CAACAGGTGAGTTGTGCAGGAG......................................................................................................................................................................................... 22 0 20 1.45 29 28 0 0 1 0
...................................................TGAGTTGTGCAGGAGCGTCCGGC................................................................................................................................................................................. 23 0 20 1.35 27 0 18 9 0 0
...................................................TGAGTTGTGCAGGAGCGTCCG................................................................................................................................................................................... 21 0 20 1.30 26 26 0 0 0 0
...............................................................................................................................TGGCAGCTTGCTTGGAGAGTGTGGC................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
............................................................................................................GGGGCATGCAGTCGGCATGTGGCAGA..................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................GTCAACCGATCCTCGCGCAATGCCA............ 25 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................ACCGATCCTCGCGCAATGCCACCGG........ 25 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................ACCGATCCTCGCGCAATGCCACC.......... 23 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................TCAACCGATCCTCGCGCAATGCCACC.......... 26 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................GTCAACCGATCCTCGCGCAATGCCACC.......... 27 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTGC...................................................................................... 24 0 20 0.75 15 13 1 1 0 0
...................................................TGAGTTGTGCAGGAGCGTCCGGCGTGG............................................................................................................................................................................. 27 0 20 0.60 12 11 0 1 0 0
...................................................TTAGTTGTGCAGGAGCGTCCGGC................................................................................................................................................................................. 23 1 20 0.55 11 0 11 0 0 0
............................................CAACAGGTGAGTTGTGCAGGAGCG....................................................................................................................................................................................... 24 0 20 0.55 11 11 0 0 0 0
............................................CAACAGGTGAGTTGTGCAGGAGCGT...................................................................................................................................................................................... 25 0 20 0.45 9 8 0 1 0 0
............................................CAACAGGTGAGTTGTGCAGGA.......................................................................................................................................................................................... 21 0 20 0.45 9 7 1 0 1 0
...............................................CAGGTGAGTTGTGCAGGAGCGT...................................................................................................................................................................................... 22 0 20 0.40 8 8 0 0 0 0
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTG....................................................................................... 23 0 20 0.40 8 8 0 0 0 0
...................................................TGAGTTGTGCAGGAGCGTCC.................................................................................................................................................................................... 20 0 20 0.35 7 6 0 1 0 0
............................................CAACAGGTGAGTTGTGCAGGAGCGTC..................................................................................................................................................................................... 26 0 20 0.30 6 4 0 2 0 0
...................................................TGAGTTGTGCAGGAGCGTCCGGCG................................................................................................................................................................................ 24 0 20 0.25 5 0 0 5 0 0
.............................................AACAGGTGAGTTGTGCAGGAGC........................................................................................................................................................................................ 22 0 20 0.25 5 5 0 0 0 0
...............................................CAGGTGAGTTGTGCAGGAGCGTCC.................................................................................................................................................................................... 24 0 20 0.25 5 0 2 3 0 0
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCT........................................................................................ 22 0 20 0.20 4 1 2 1 0 0
...............................................CGGGTGAGTTGTGCAGGAGCGTCC.................................................................................................................................................................................... 24 1 20 0.15 3 0 3 0 0 0
............................................CAACAGGTGAGTTGTGCAGGAGCGTCC.................................................................................................................................................................................... 27 0 20 0.15 3 0 0 3 0 0
...................................................TGAGTTGTGCAGGAGCGTCCGGCGT............................................................................................................................................................................... 25 0 20 0.10 2 1 1 0 0 0
....................................................GAGTTGTGCAGGAGCGTCCGGC................................................................................................................................................................................. 22 0 20 0.10 2 0 0 1 1 0
............................................CACCAGGTGAGTTGTGCAGGAGC........................................................................................................................................................................................ 23 1 20 0.10 2 0 2 0 0 0
.............................................................................................................................................GAGAGTGTGGCTACAGACGC.......................................................................................... 20 0 20 0.10 2 1 1 0 0 0
.............................................................................................................................................GAGAGTGTGGCTACAGACGCC......................................................................................... 21 0 20 0.10 2 1 1 0 0 0
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTGCCAC................................................................................... 27 0 20 0.10 2 2 0 0 0 0
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTGCCA.................................................................................... 26 0 20 0.10 2 2 0 0 0 0
..............................................................................................................................................AGAGTGTGGCTACAGACGCC......................................................................................... 20 0 20 0.10 2 2 0 0 0 0
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTGCC..................................................................................... 25 0 20 0.10 2 1 0 1 0 0
...................................................TGATTTGTGCAGGAGCGTCC.................................................................................................................................................................................... 20 1 20 0.10 2 0 2 0 0 0
......................................................................................................................................................................ACCCAGATGGCTCCACCG................................................................... 18 1 13 0.08 1 0 0 0 0 1
............................................................................................................................................................................................TGGGTCTTCAGGTGTCGGAAAAAA....................................... 24 2 14 0.07 1 1 0 0 0 0
............................................................................................................................................................................................TGGGTCTTCAGGTGTCGGAAAAGCC...................................... 25 1 14 0.07 1 1 0 0 0 0
............................................................................................................................................GGAGAGTGTGGCTACAGACGCCT........................................................................................ 23 0 15 0.07 1 1 0 0 0 0
............................................................................................................................................GGAGAGTGTGGCTACAGACGCCTGC...................................................................................... 25 0 15 0.07 1 1 0 0 0 0
...............................................................GAGCGTCCGGCGTGGGCAGAGG...................................................................................................................................................................... 22 0 15 0.07 1 1 0 0 0 0
..........................................................TGCAGGAGCGTCCGGCGTGGGCAGAGG...................................................................................................................................................................... 27 0 15 0.07 1 1 0 0 0 0
....................................................................TCCGGCGTGGGCAGAGGCAGCGGCGG............................................................................................................................................................. 26 0 15 0.07 1 1 0 0 0 0
.............CGGGTGCCAAAGCCACCGGGG......................................................................................................................................................................................................................... 21 0 15 0.07 1 1 0 0 0 0
...............................................................................CAGAGGCAGCGGCGGCCCATCA...................................................................................................................................................... 22 0 16 0.06 1 1 0 0 0 0
....................................................................TCCGGCGTGGGCAGAGGCAGCGG................................................................................................................................................................ 23 0 16 0.06 1 1 0 0 0 0
.................................................................................................................................................................CTGACACGCAGATGGCCC........................................................................ 18 2 17 0.06 1 0 0 0 1 0
.................TGCCAAAGCCACCGGGGACTGCAGAA................................................................................................................................................................................................................ 26 0 18 0.06 1 1 0 0 0 0
...........................................................................TGGGCAGAGGCAGCGGCGGCCC.......................................................................................................................................................... 22 0 18 0.06 1 0 1 0 0 0
............................................CAATAGGTGAGTTGTGCAGGAG......................................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0
...................................................TGAGTTGTGCAGGAGCGTCCGGCGTTAA............................................................................................................................................................................ 28 3 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................GGCACAACCGGGTGTGGGT.......................................................... 19 3 20 0.05 1 0 0 1 0 0
......................................................GTTGTGCAGGAGCGTCCGG.................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0
............................................CAACAGGTGAGTTGTGCAGGAGT........................................................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0
..................................................GTGAGTTGTGCAGGAGCGTCCGGC................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................GAGTGTGGCTACAGACGCCTGCCA.................................................................................... 24 0 20 0.05 1 1 0 0 0 0
...................................................TGAGTTGTGCAGGAGCGTCCGGCT................................................................................................................................................................................ 24 1 20 0.05 1 0 0 1 0 0
.............................................................................................................................................GAGAGTGTGGCGACAGACGCCT........................................................................................ 22 1 20 0.05 1 1 0 0 0 0
...................................................TTAGTTGTGCAGGAGCGTCCGG.................................................................................................................................................................................. 22 1 20 0.05 1 0 1 0 0 0
............................................CAACGGGTGAGTTGTGCAGGAGC........................................................................................................................................................................................ 23 1 20 0.05 1 0 1 0 0 0
......................................................GTTGTGCAGGAGCGTCCGGC................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
...............................................CAGGTGAGTTGTGCAGGAGCGTA..................................................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0
..........................................................TGCAGGAGCGTCCGGCGTGGGC........................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
..............................................ACAGGTGAGTTGTGCAGGAGCGT...................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
............................................CAACAGGTGAGTTGTGCAG............................................................................................................................................................................................ 19 0 20 0.05 1 0 1 0 0 0
............................................CAACAGGTGACTTGTGCAGGAGC........................................................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0
............................................CAACAGGTGAGTTGTGCAGGAGATT...................................................................................................................................................................................... 25 2 20 0.05 1 1 0 0 0 0
............................................CAACAGGTGAGTTGCGCAGGAGC........................................................................................................................................................................................ 23 1 20 0.05 1 0 0 1 0 0
...................................................TTAGGTGTGCAGGAGCGTCCGGC................................................................................................................................................................................. 23 2 20 0.05 1 0 1 0 0 0
.......................................................TTGTGCAGGAGCGTCCGGCGTGGGC........................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0
............................................CAACAGTTGAGTTGTGCAGGAGC........................................................................................................................................................................................ 23 1 20 0.05 1 0 1 0 0 0
.............................................................................................................................................GAGAGTGTGGCTACCGACGCCCGC...................................................................................... 24 2 20 0.05 1 0 0 0 1 0
............................................CAACAGGTGAGTTGTGCAGGAT......................................................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0
............................................CAACAGGTGAGTTGTGCAGGAGCGTCCG................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
...................................................TTAGTTGTGCAGGAGCGTCCA................................................................................................................................................................................... 21 2 20 0.05 1 0 1 0 0 0
....................................................GAGTTGTGCAGGAGCGTACGGCG................................................................................................................................................................................ 23 1 20 0.05 1 0 0 1 0 0
............................................CAGCAGGTGAGTTGTGCAGGAGCGTC..................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
...................................................TGAGTTGTGCAGGAGCGTCCGGCGTG.............................................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0
.............................................................................................................................................GGGAGTGTGGCTACAGACGCC......................................................................................... 21 1 20 0.05 1 0 1 0 0 0
...............................................CAGGTGAGTTGTGCAGGAGCGTCCG................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.............................................AACAGGTGAGTTGTGCAGGAGCGT...................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
..................................................GTGAGTTGTGCAGGAGCGTCCGG.................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTTT...................................................................................... 24 2 20 0.05 1 1 0 0 0 0
.....................................................AGTTGTGCAGGAGCGTCCGGC................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
...................................................TGAGTTGTGCAGGAGCGTCCGGCGTC.............................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
....................................................GAGTTGTGCAGGAGCGTCCG................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
...................................................TGAGTTGTGCAGGAGCGTCCGAC................................................................................................................................................................................. 23 1 20 0.05 1 0 1 0 0 0
............................................CAACAGGTGAGGTGTGCAGGAG......................................................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CCACCGGCGGGGTGCCCACGGTTTCGGTGGCCCCTGACGTCTTGGTTGTCCACTCAACACGTCCTCGCAGGCCGCACCCGTCTCCGTCGCCGCCGGGTAGTACATACGCCCCGTACGTCAGCCGTACACCGTCGAACGAACCTCTCACACCGATGTCTGCGGACGGTGCGTCTACCGAGGTGGCCGACACCCAGAAGTCCACAGCCTTTTCGAACAGTTGGCTAGGAGCGCGTTACGGTGGCCCCCGACGT
***************************************************************************************************........((....((.((((.....((((..(((.((.((((((.....(((((((...)))))))...))).))).)).)))))))))))..))...))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
 V049
head
.............................................................................................................................ACACCGTCGAACGAACCTCTCACACC.................................................................................................... 26 0 1 69.00 69 64 4 0 1 0 0
..............................................................................................................................CACCGTCGAACGAACCTCTCACACC.................................................................................................... 25 0 1 17.00 17 8 9 0 0 0 0
............................................................................................................................AACACCGTCGAACGAACCTCTCACACC.................................................................................................... 27 1 1 5.00 5 5 0 0 0 0 0
................................................................................................................................CCGTCGAACGAACCTCTCACACC.................................................................................................... 23 0 1 5.00 5 2 3 0 0 0 0
............................GGCCCCTGACGTCTTGGTTGTCCACT..................................................................................................................................................................................................... 26 0 15 4.93 74 60 14 0 0 0 0
......................................................................................................................................................................................................CCACAGCCTTTTCGAACAGTTGGCTA........................... 26 0 1 4.00 4 0 4 0 0 0 0
.................................................................................................................................CGTCGAACGAACCTCTCACACC.................................................................................................... 22 0 1 3.00 3 1 2 0 0 0 0
.............................................................................................................................ACACCGTCGAACGAACCTCTCACAC..................................................................................................... 25 0 1 3.00 3 2 1 0 0 0 0
...............................................................................................................................ACCGTCGAACGAACCTCTCACACC.................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0
..........................................................................................................................CGTACACCGTCGAACGAACCTCTCACACC.................................................................................................... 29 0 1 2.00 2 1 1 0 0 0 0
.............................................................................................................................ACACCGTCGAACGAACCTCTCACA...................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
.......CGGGGTGCCCACGGTTTCGGTGGCCCCT........................................................................................................................................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0
.....GGCGGGGTGCCCACGGTTTCGGT............................................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................................CAGCCTTTTCGAACAGTTGGCTAGGAG....................... 27 0 1 2.00 2 1 0 1 0 0 0
..................................................................................................................................................................................................................CGAACAGTTGGCTAGGAGCGCGTT................. 24 0 1 2.00 2 0 2 0 0 0 0
..............................................................................................................................CACCGTCGAACGAACCTCTCACAC..................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
................................CCTGACGTCTTGGTTGTCCACTCAA.................................................................................................................................................................................................. 25 0 18 1.89 34 11 22 0 0 0 1
...........................TGGCCCCTGACGTCTTGGTTGTCCACT..................................................................................................................................................................................................... 27 0 15 1.33 20 18 2 0 0 0 0
..............................CCCCTGACGTCTTGGTTGTCCACTCAA.................................................................................................................................................................................................. 27 0 15 1.07 16 11 5 0 0 0 0
.............................GCCCCTGACGTCTTGGTTGTCCACT..................................................................................................................................................................................................... 25 0 15 1.07 16 14 2 0 0 0 0
...............................CCCTGACGTCTTGGTTGTCCACTCAA.................................................................................................................................................................................................. 26 0 16 1.06 17 10 7 0 0 0 0
...........................................................................................................................CTACACCGTCGAACGAACCTCTCACACC.................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................ACACCGTCGAACGAACCTCTCACACCT................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................ACCGTCGAACGAACCTCTCACACCGA.................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................TTCGAACAGTTGGCTAGGAGCGCGTT................. 26 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................ACACCGTCGAACGAATCTCTCACACC.................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................TCGAACAGTTGGCTAGGAGCGCGTT................. 25 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................CACCGTCGAACGAACCTCTCACACCGAT................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................CAGCCTTTTCGAACAGTTGGCTAGGA........................ 26 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TTTTCGAACAGTTGGCTAGGAGCGCGT.................. 27 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................TTACACCGTCGAACGAACCTCTCACACC.................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................ACACCGTCGAACGAACCTCTCACACCGAT................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................CCACAGCCTTTTCGAACAGTTGGCTAG.......................... 27 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................ACACGGTCGAACGAACCTCTCACACC.................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................GTACACCGTCGAACGAACCTCTCACAC..................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
CCACCGGCGGGGTGCCCACGGTTT................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................CCACAGCCTTTTCGAACAGTTGGCGA........................... 26 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................ACACCGTCCAACGAACCTCTCACACC.................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
..............................CCCCTGACGTCTTGGTTGTCCACT..................................................................................................................................................................................................... 24 0 15 1.00 15 7 8 0 0 0 0
.............................................................................................................................ACACCGTCGAACGAACCTCTCATACC.................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................GTACACCGTCGAACGAACCTCTCACACC.................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................CGTACACCGTCGAACGAACCTCTCACA...................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...CCGGCGGGGTGCCCACGGTTTCGGT............................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................ACCGTCGAACGAACCTCTCACAC..................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
......ACGGGGTGCCCACGGTTTCGGTGGCCCCT........................................................................................................................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CACCGTCGAACGAACCTCTCACA...................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..........GGTGCGCACGGCCTCGGTG.............................................................................................................................................................................................................................. 19 3 20 0.95 19 0 0 19 0 0 0
...............................CCCTGACGTCTTGGTTGTCCACT..................................................................................................................................................................................................... 23 0 16 0.63 10 6 4 0 0 0 0
............................GGCCCCTGACGTCTTGGTTGTCCAC...................................................................................................................................................................................................... 25 0 15 0.53 8 7 1 0 0 0 0
............................GGCCCCTGACGTCTTGGTTGTCCACTCAA.................................................................................................................................................................................................. 29 0 15 0.47 7 5 2 0 0 0 0
................................CCTGACGTCTTGGTTGTCCACT..................................................................................................................................................................................................... 22 0 18 0.44 8 1 7 0 0 0 0
...........................................................................................................................................................................CTACCGAGGTGGCCGACACCCAGAAGT..................................................... 27 0 14 0.43 6 3 3 0 0 0 0
..............................................................................................................................................................................CCGAGGTGGCCGACACCCAGAAGT..................................................... 24 0 14 0.36 5 1 3 1 0 0 0
..................................CGACGTCTTGGTTGTCCACTCAACACG.............................................................................................................................................................................................. 27 1 20 0.30 6 0 6 0 0 0 0
.............................GCCCCTGACGTCTTGGTTGTCCACTCAA.................................................................................................................................................................................................. 28 0 15 0.27 4 3 1 0 0 0 0
..............................................................CCTCGCAGGCCGCACCCGTCTCCGT.................................................................................................................................................................... 25 0 15 0.20 3 3 0 0 0 0 0
.............................................................................................................................ACACCGTCGAACGAGCCTCTCACACC.................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................ACACCGTCGAACGACCCTCTCACACC.................................................................................................... 26 1 5 0.20 1 0 1 0 0 0 0
...............................CCCTGACGTCTTGGTTGTCCAGT..................................................................................................................................................................................................... 23 1 16 0.19 3 0 3 0 0 0 0
......................................................................................................................................................................TGCGTCTACCGAGGTGGCCGACACC............................................................ 25 0 12 0.17 2 0 2 0 0 0 0
.....................................CGTCTTGGTTGTCCACTCAACACGT............................................................................................................................................................................................. 25 0 20 0.15 3 3 0 0 0 0 0
....................................ACGTCTTGGTTGTCCACTCAACACG.............................................................................................................................................................................................. 25 0 20 0.15 3 0 3 0 0 0 0
......................................................................................................................................................................................................CCGCAGCCTTTTCGAACAGTTGGCT............................ 25 1 7 0.14 1 0 1 0 0 0 0
.......................................................................................CGCCGCCGGGTAGTACATACGCCCCGT......................................................................................................................................... 27 0 14 0.14 2 2 0 0 0 0 0
........................................................................................GCCGCCGGGTAGTACATACGCCCCGT......................................................................................................................................... 26 0 14 0.14 2 2 0 0 0 0 0
..............................................................................................................................................................................CCGAGGTGGCCGACACCCAGAAGTC.................................................... 25 0 14 0.14 2 1 1 0 0 0 0
...............................................................................................................................................................................CGAGGTGGCCGACACCCAGAAGT..................................................... 23 0 14 0.14 2 2 0 0 0 0 0
...........................CGGCCCCTGACGTCTTGGTTGTCCACT..................................................................................................................................................................................................... 27 1 15 0.13 2 0 2 0 0 0 0
...........................TGGCCCCTGACGTCTTGGTTGTCCAC...................................................................................................................................................................................................... 26 0 15 0.13 2 2 0 0 0 0 0
................................................................................................GTAGTACATACGCCCCGTACGTCAGCCGT.............................................................................................................................. 29 0 8 0.13 1 1 0 0 0 0 0
....................................................................................................................................CGAACGAACCTCTCACACCGATGTCT............................................................................................. 26 0 9 0.11 1 1 0 0 0 0 0
................................CCTGACGTCTTGGTTGTCCACTCGA.................................................................................................................................................................................................. 25 1 18 0.11 2 0 2 0 0 0 0
................................CCTGACGTCTTGGTTGTCCACTAAA.................................................................................................................................................................................................. 25 1 18 0.11 2 0 2 0 0 0 0
............................................................................................................................................................CTGCGGACGGTGCGTCTACCGAGGT...................................................................... 25 0 10 0.10 1 1 0 0 0 0 0
.......................................CCTTGGTTGTCCACTCAACACG.............................................................................................................................................................................................. 22 1 20 0.10 2 0 2 0 0 0 0
.................................CTGACGTCTTGGTTGTCCACTCA................................................................................................................................................................................................... 23 0 20 0.10 2 1 1 0 0 0 0
....................................................................................................................................................ACCGATGTCTGCGGACGGTGCGTCT.............................................................................. 25 0 10 0.10 1 0 0 1 0 0 0
.....................................................................................................................................GAACGAACCTCTCACACC.................................................................................................... 18 0 10 0.10 1 0 1 0 0 0 0
......................................................................................................CATACGCCCCGTACGTCAGCCGT.............................................................................................................................. 23 0 12 0.08 1 1 0 0 0 0 0
.............................................................................................CGGGTAGTACATACGCCCCGTACGT..................................................................................................................................... 25 0 12 0.08 1 1 0 0 0 0 0
..............................................................................................GGGTAGTACATACGCCCCGTACGT..................................................................................................................................... 24 0 12 0.08 1 1 0 0 0 0 0
..................................................................................................................................................................................GGTGGCCGACACCCAGAAGTCCACAGCCT............................................ 29 0 12 0.08 1 1 0 0 0 0 0
...........................................................................................................................................................................CTACCGAGGTGGCCGACACCCAGAAG...................................................... 26 0 14 0.07 1 1 0 0 0 0 0
...........................................................................................GCCGGGTAGTACATACGCCCC........................................................................................................................................... 21 0 14 0.07 1 1 0 0 0 0 0
........................CGGTGGCCCCTGACGTCTTGGTTG........................................................................................................................................................................................................... 24 0 14 0.07 1 1 0 0 0 0 0
...........................................................................................................................................................................ATACCGAGGTGGCCGACACCCAGAAGT..................................................... 27 1 14 0.07 1 1 0 0 0 0 0
.............................................................................................................................................................................TCCGAGGTGGCCGACACCCAGAAGT..................................................... 25 1 14 0.07 1 1 0 0 0 0 0
.............................................................................................................................................................................ACCGAGGTGGCCGACACCCAGAAGT..................................................... 25 0 14 0.07 1 0 0 0 0 1 0
........................................................................................................................................................................................CGACACCCAGAAGTCCACAGCCTTT.......................................... 25 0 14 0.07 1 0 1 0 0 0 0
.............................................................................................................................................................................................CCCAGAAGTCCACAGCCTTTTCGAA..................................... 25 0 14 0.07 1 0 1 0 0 0 0
..............................................................................................................................................................................CCGAGGTGGCCGACACCCAGAAGTCC................................................... 26 0 14 0.07 1 0 1 0 0 0 0
............................................................................................................................................................................TACCGAGGTGGCCGACACCCAGAAGT..................................................... 26 0 14 0.07 1 1 0 0 0 0 0
...............................................................................................................................................................................CGAGGTGGCCGACACCCAGAAG...................................................... 22 0 14 0.07 1 1 0 0 0 0 0
..............................CCCCTGACGTCTTGGTTGTCCACTC.................................................................................................................................................................................................... 25 0 15 0.07 1 1 0 0 0 0 0
..............................................................................................................................................................................CCGAGGTGGCCTACACCCAGAAGTC.................................................... 25 1 15 0.07 1 0 1 0 0 0 0
...........................TGTCCCCTGACGTCTTGGTTGTCCAC...................................................................................................................................................................................................... 26 1 15 0.07 1 1 0 0 0 0 0
.............................GCCCCTGACGTCTTGGTTGTCCA....................................................................................................................................................................................................... 23 0 15 0.07 1 1 0 0 0 0 0
..............................CCCCTGACGTCTTGGTTGTCCGCTCAA.................................................................................................................................................................................................. 27 1 15 0.07 1 0 1 0 0 0 0
....................................................................................CGTCGCCGCCGGGTAGTACAT.................................................................................................................................................. 21 0 15 0.07 1 0 1 0 0 0 0
......................................................................................................................................................................................................CCACAGCCTTTTCGAACGGTTTGCTA........................... 26 2 15 0.07 1 0 1 0 0 0 0
...........................TGGCCCCTGACGTCTTGGTTGTCTACT..................................................................................................................................................................................................... 27 1 15 0.07 1 0 1 0 0 0 0
............................GGCCCCTGACGTCTAGGTTGTCCACT..................................................................................................................................................................................................... 26 1 15 0.07 1 1 0 0 0 0 0
..............................CCCCTGACGTCTTTGTTGTCCACTCAA.................................................................................................................................................................................................. 27 1 15 0.07 1 1 0 0 0 0 0
...........................................................CCTCCTCGCAGGCCGCACCCGTCT........................................................................................................................................................................ 24 1 15 0.07 1 1 0 0 0 0 0
............................GGCCCCTGACGTCTTGGTTGTCCACC..................................................................................................................................................................................................... 26 1 15 0.07 1 0 1 0 0 0 0
..........................GTGGCCCCTGACGTCTTGGTTGTCCACT..................................................................................................................................................................................................... 28 0 15 0.07 1 1 0 0 0 0 0
.............................GCCCCTGACGTCTTGGTTGTCCACTCA................................................................................................................................................................................................... 27 0 15 0.07 1 1 0 0 0 0 0
.............................GCCCCTGACGTCTTGGTTGTCCACTC.................................................................................................................................................................................................... 26 0 15 0.07 1 1 0 0 0 0 0
...............................CCCTGACGTCTTGGTTGTCCACTCA................................................................................................................................................................................................... 25 0 16 0.06 1 1 0 0 0 0 0
...............................CCCTGACGTCTTGGTTGTCCAC...................................................................................................................................................................................................... 22 0 16 0.06 1 1 0 0 0 0 0
................................CCTGACGTCTTGGTTGTCCACTCAACACG.............................................................................................................................................................................................. 29 0 17 0.06 1 1 0 0 0 0 0
................................CCTGACGTCTTGGTTGTCCACTGAA.................................................................................................................................................................................................. 25 1 18 0.06 1 0 1 0 0 0 0
.................................................................CGCAGGCCGCACCCGTCTCCGT.................................................................................................................................................................... 22 0 18 0.06 1 1 0 0 0 0 0
................................CCTGGCGTCTTGGTTGTCCACTCAA.................................................................................................................................................................................................. 25 1 18 0.06 1 0 1 0 0 0 0
............................GGCCCCTGACGTCTTGGGTGTCCACTCAA.................................................................................................................................................................................................. 29 1 19 0.05 1 1 0 0 0 0 0
.........................................................CACGTCCTCGCAGGCCGCACC............................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
.....................................CGTCTTGGTTGTCCACTAAA.................................................................................................................................................................................................. 20 1 20 0.05 1 0 1 0 0 0 0
.................................CTGACGTCTTGGTTGTCCACTCAT.................................................................................................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
.................................CTGACGTCTTGGTTGTCCACTCAACACC.............................................................................................................................................................................................. 28 1 20 0.05 1 0 1 0 0 0 0
.........................................TTGGTTGTCAACTCAACAGG.............................................................................................................................................................................................. 20 2 20 0.05 1 0 1 0 0 0 0
.........................................TTGGTTGTGCACTCAACACG.............................................................................................................................................................................................. 20 1 20 0.05 1 1 0 0 0 0 0
...................................GACGTCTTGGTTGTACACTCAACACG.............................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
.......................................TCTTGGTTGTCCACTCAACACC.............................................................................................................................................................................................. 22 1 20 0.05 1 1 0 0 0 0 0
......................................GTCTTGGTCGTCCACTCAACACG.............................................................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0
.................................CTGACGTCTTGGTTGTCCACTAAA.................................................................................................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
..................................GAACGTCTTGGTTGTCCACTCAACACG.............................................................................................................................................................................................. 27 2 20 0.05 1 1 0 0 0 0 0
.................ACGGTTTCGGTGGCCCCTGACGT................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
...................................GGCGTCTTGGTTGTCCACTCAACACG.............................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
..................CGGTTTCGGTGGCCCCTGACGT................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
......................................GTCTTGGTTGTCCACTCAACACGG............................................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
...................................GACGTCTTGGTTGTCCACTCAACACT.............................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
.................................ATGACGTCTTGGTTGTCCACTCAACACG.............................................................................................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0 0
....................................ACGTCTTGGTTGTCCACTCAACACC.............................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.................................CTGACGTCTTGGTTGTCCGCTCAACAC............................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
......................................GTCTTGGTTGGCCACTCAACAC............................................................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0
..................................TGACGTCTTGGTTGTCCACTCAACACGT............................................................................................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0 0
...................................GACTTCTTGGTTGTCCACTCAACACG.............................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0
............................................................................CCCGTCTCCGGAGCCGCCG............................................................................................................................................................ 19 2 20 0.05 1 1 0 0 0 0 0
.................................CTGACGTCTTGGTTGTCCACTCAAC................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0
.....................................CTTCTTGGTTGTCCACTCAA.................................................................................................................................................................................................. 20 1 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6497:226190-226440 + dmo_1268 GGTGGCCGCCCCACGGGTGCCAAAGCCACCGGGGACTGCAGAACCAACAGGTGAGTTGTGCAGGAGCGTCCGGCGTGGGCAGAGGCAGCGGCGGCCCATCATGTATGCGGGGCATGCAGTCGGCATGTGGCAGCTTGCTTGGAGAGTGTGGCTACAGACGCCTGCCACGCAGATGGCTCCACCGGCTGTGGGTCTTCAGGTGTCGGAAAAGCTTGTCAACCGATCCTCGCGCAATGCCACCGGGGGCTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GGTGGCCGCCCCACGGGTGCCAAAGCCACCGGGGACTGCAGAACCAACAGGTGAGTTGTGCAGGAGCGTCCGGCGTGGGCAGAGGCAGCGGCGGCCCATCATGTATGCGGGGCATGCAGTCGGCATGTGGCAGCTTGCTTGGAGAGTGTGGCTACAGACGCCTGCCACGCAGATGGCTCCACCGGCTGTGGGTCTTCAGGTGTCGGAAAAGCTTGTCAACCGATCCTCGCGCAATGCCACCGGGGGCTGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................TGAGTTGTGCAGGAGCGTCCGG..................................................................................................................................................................................22203.60726350040
............................................CAACAGGTGAGTTGTGCAGGAGC........................................................................................................................................................................................23202.65535300000
......................................................................................................................................................................................................................GTCAACCGATCCTCGCGCAATGC..............2312.002100010
..........................................................................................................................................................................................................................ACCGATCCTCGCGCAATGCCACCG.........2412.002200000
............................................CAACAGGTGAGTTGTGCAGGAG.........................................................................................................................................................................................22201.45292810000
...................................................TGAGTTGTGCAGGAGCGTCCGGC.................................................................................................................................................................................23201.35270000189
...................................................TGAGTTGTGCAGGAGCGTCCG...................................................................................................................................................................................21201.30262600000
...............................................................................................................................TGGCAGCTTGCTTGGAGAGTGTGGC...................................................................................................2511.001000010
............................................................................................................GGGGCATGCAGTCGGCATGTGGCAGA.....................................................................................................................2611.001100000
......................................................................................................................................................................................................................GTCAACCGATCCTCGCGCAATGCCA............2511.001100000
..........................................................................................................................................................................................................................ACCGATCCTCGCGCAATGCCACCGG........2511.001100000
..........................................................................................................................................................................................................................ACCGATCCTCGCGCAATGCCACC..........2311.001100000
.......................................................................................................................................................................................................................TCAACCGATCCTCGCGCAATGCCACC..........2611.001100000
......................................................................................................................................................................................................................GTCAACCGATCCTCGCGCAATGCCACC..........2711.001100000
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTGC......................................................................................24200.75151300011
...................................................TGAGTTGTGCAGGAGCGTCCGGCGTGG.............................................................................................................................................................................27200.60121100001
............................................CAACAGGTGAGTTGTGCAGGAGCG.......................................................................................................................................................................................24200.55111100000
............................................CAACAGGTGAGTTGTGCAGGAGCGT......................................................................................................................................................................................25200.459800001
............................................CAACAGGTGAGTTGTGCAGGA..........................................................................................................................................................................................21200.459710010
...............................................CAGGTGAGTTGTGCAGGAGCGT......................................................................................................................................................................................22200.408800000
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTG.......................................................................................23200.408800000
...................................................TGAGTTGTGCAGGAGCGTCC....................................................................................................................................................................................20200.357600001
............................................CAACAGGTGAGTTGTGCAGGAGCGTC.....................................................................................................................................................................................26200.306400002
...................................................TGAGTTGTGCAGGAGCGTCCGGCG................................................................................................................................................................................24200.255000005
.............................................AACAGGTGAGTTGTGCAGGAGC........................................................................................................................................................................................22200.255500000
...............................................CAGGTGAGTTGTGCAGGAGCGTCC....................................................................................................................................................................................24200.255000023
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCT........................................................................................22200.204100021
............................................CAACAGGTGAGTTGTGCAGGAGCGTCC....................................................................................................................................................................................27200.153000003
...................................................TGAGTTGTGCAGGAGCGTCCGGCGT...............................................................................................................................................................................25200.102100010
....................................................GAGTTGTGCAGGAGCGTCCGGC.................................................................................................................................................................................22200.102010001
.............................................................................................................................................GAGAGTGTGGCTACAGACGC..........................................................................................20200.102100010
.............................................................................................................................................GAGAGTGTGGCTACAGACGCC.........................................................................................21200.102100010
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTGCCAC...................................................................................27200.102200000
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTGCCA....................................................................................26200.102200000
..............................................................................................................................................AGAGTGTGGCTACAGACGCC.........................................................................................20200.102200000
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTGCC.....................................................................................25200.102100001
............................................................................................................................................................................................TGGGTCTTCAGGTGTCGGAAAAAA.......................................24140.071100000
............................................................................................................................................................................................TGGGTCTTCAGGTGTCGGAAAAGCC......................................25140.071100000
............................................................................................................................................GGAGAGTGTGGCTACAGACGCCT........................................................................................23150.071100000
............................................................................................................................................GGAGAGTGTGGCTACAGACGCCTGC......................................................................................25150.071100000
...............................................................GAGCGTCCGGCGTGGGCAGAGG......................................................................................................................................................................22150.071100000
..........................................................TGCAGGAGCGTCCGGCGTGGGCAGAGG......................................................................................................................................................................27150.071100000
....................................................................TCCGGCGTGGGCAGAGGCAGCGGCGG.............................................................................................................................................................26150.071100000
.............CGGGTGCCAAAGCCACCGGGG.........................................................................................................................................................................................................................21150.071100000
...............................................................................CAGAGGCAGCGGCGGCCCATCA......................................................................................................................................................22160.061100000
....................................................................TCCGGCGTGGGCAGAGGCAGCGG................................................................................................................................................................23160.061100000
.................TGCCAAAGCCACCGGGGACTGCAGAA................................................................................................................................................................................................................26180.061100000
...........................................................................TGGGCAGAGGCAGCGGCGGCCC..........................................................................................................................................................22180.061000010
...................................................TGAGTTGTGCAGGAGCGTCCGGCGTTAA............................................................................................................................................................................28200.051100000
......................................................GTTGTGCAGGAGCGTCCGG..................................................................................................................................................................................19200.051100000
............................................CAACAGGTGAGTTGTGCAGGAGT........................................................................................................................................................................................23200.051100000
..................................................GTGAGTTGTGCAGGAGCGTCCGGC.................................................................................................................................................................................24200.051100000
...............................................................................................................................................GAGTGTGGCTACAGACGCCTGCCA....................................................................................24200.051100000
...................................................TGAGTTGTGCAGGAGCGTCCGGCT................................................................................................................................................................................24200.051000001
......................................................GTTGTGCAGGAGCGTCCGGC.................................................................................................................................................................................20200.051100000
...............................................CAGGTGAGTTGTGCAGGAGCGTA.....................................................................................................................................................................................23200.051100000
..........................................................TGCAGGAGCGTCCGGCGTGGGC...........................................................................................................................................................................22200.051000010
..............................................ACAGGTGAGTTGTGCAGGAGCGT......................................................................................................................................................................................23200.051100000
............................................CAACAGGTGAGTTGTGCAG............................................................................................................................................................................................19200.051000010
.......................................................TTGTGCAGGAGCGTCCGGCGTGGGC...........................................................................................................................................................................25200.051010000
............................................CAACAGGTGAGTTGTGCAGGAT.........................................................................................................................................................................................22200.051100000
............................................CAACAGGTGAGTTGTGCAGGAGCGTCCG...................................................................................................................................................................................28200.051100000
...................................................TGAGTTGTGCAGGAGCGTCCGGCGTG..............................................................................................................................................................................26200.051000001
...............................................CAGGTGAGTTGTGCAGGAGCGTCCG...................................................................................................................................................................................25200.051100000
.............................................AACAGGTGAGTTGTGCAGGAGCGT......................................................................................................................................................................................24200.051100000
..................................................GTGAGTTGTGCAGGAGCGTCCGG..................................................................................................................................................................................23200.051100000
.............................................................................................................................................GAGAGTGTGGCTACAGACGCCTTT......................................................................................24200.051100000
.....................................................AGTTGTGCAGGAGCGTCCGGC.................................................................................................................................................................................21200.051100000
...................................................TGAGTTGTGCAGGAGCGTCCGGCGTC..............................................................................................................................................................................26200.051100000
....................................................GAGTTGTGCAGGAGCGTCCG...................................................................................................................................................................................20200.051100000

Generated: 05/18/2015 at 12:01 AM