dmo_1262

exon [dmoj_GLEANR_3253:2]; CDS [Dmoj\GI18326-cds]; CDS [Dmoj\GI18326-cds]; exon [dmoj_GLEANR_3253:1]; intron [Dmoj\GI18326-in]

Name	Class	Family	Strand
Gypsy4-I_Dmoj-int	LTR	Gypsy	-

Name

Class

Family

Strand

Gypsy4-I_Dmoj-int

LTR

Gypsy

##################################################---------------------------------------------------------------------------------------------------------------------################################################## CAAAAGAGACGGCCATCGTGGAAGACATAAGCGACGCCGACACCGAAGACGTAAGCGACGCTGACACCGAGCCGTTCCCCTGCACGGGATATGAAAGGCGAGACGACCCGAGGATGGGCACGGGAATATTATCGGCCTCGTGAGGAACGATCTCCACCCAAATTCAGACATACGGTCCATCGATCGGAGATCAATATCGCCGAAAGGTTGGGTGGAT ****************************************************((((.(((((.......((((.(((.....((((..................)))).....))).))))........))))).))))..(((......)))....********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body
......................................................................................................................................................................GACATACGGTCCATCGATCGGAGATC.........................	26	0	2	4.00	8	7	0	1
........................................................................................................................................CTCGTGAGGAACGATCTCCACCC..........................................................	23	0	1	3.00	3	2	1	0
......................................................GCGACGCTGACACCGAGCCGTTCCCC.........................................................................................................................................	26	0	1	3.00	3	3	0	0
......................................................................................................................................................................GACATACGGTCCATCGATCGGAGA...........................	24	0	2	3.00	6	2	3	1
......................................................................................................................................................................GACATACGGTCCATCGATCGGAG............................	23	0	2	2.50	5	5	0	0
......................................................GCGACGCTGACACCGAGCCGT..............................................................................................................................................	21	0	1	2.00	2	2	0	0
......................................................GCGACGCTGACACCGAGCCGTTCC...........................................................................................................................................	24	0	1	2.00	2	1	1	0
............CGATCGTGGAAGACATAAGCGA.......................................................................................................................................................................................	22	1	1	1.00	1	0	1	0
................................................ACGTAAGCGACGCTGACACCGAGCC................................................................................................................................................	25	0	1	1.00	1	1	0	0
..............................................................................................................................TATTATCGGCCTCGTGAGGAA......................................................................	21	0	1	1.00	1	1	0	0
.....................AAGACATAAGCGACGCCGACACCGGA..........................................................................................................................................................................	26	1	1	1.00	1	0	1	0
......................................................................................................................................................................GACATACGGTCCATCGATCGG..............................	21	0	2	1.00	2	2	0	0
................................................ACGTAAGCGACGCTGACACCGA...................................................................................................................................................	22	0	1	1.00	1	1	0	0
......................................................................................................................................................................GACATACGGTCCATCGATCGGAGAT..........................	25	0	2	1.00	2	2	0	0
...........................................CGAAGACGTAAGCGACGCT...........................................................................................................................................................	19	0	1	1.00	1	1	0	0
............CCATCGTGGAAGACATAAGCGACGCC...................................................................................................................................................................................	26	0	1	1.00	1	1	0	0
.........................CATAAGCGACGCCGACACCGAAGACG......................................................................................................................................................................	26	0	1	1.00	1	1	0	0
............................................GAAGACGTAAGCGACGCTGACACCG....................................................................................................................................................	25	0	1	1.00	1	1	0	0
..............................................................................................AAGGCGAGACGACCCGAGGAT......................................................................................................	21	0	1	1.00	1	0	1	0
...........................................CGAAGACGTAAGCGACGCTGACA.......................................................................................................................................................	23	0	1	1.00	1	1	0	0
............................................................CTGACACCGAGCCGTTCCCCTGCAC....................................................................................................................................	25	0	1	1.00	1	1	0	0
.........................................................................................GATGAAAGGCGAGACGACCCGAGGAC......................................................................................................	26	2	1	1.00	1	0	1	0
...........GCCATCGTGGAAGACATAAGCGACGCC...................................................................................................................................................................................	27	0	1	1.00	1	1	0	0
........................................................................................................................................CTCGTGAGGAACGATCTCCACC...........................................................	22	0	1	1.00	1	0	1	0
..................................................................................................................................................................................................TATCGCCGAAAGGTTGGGTGG..	21	0	1	1.00	1	1	0	0
...........................................................................................................CCGAGGATGGGCACGGGAATATTATC....................................................................................	26	0	1	1.00	1	1	0	0
.........................................................................................TATGAAAGGCGAGACGACCCGAGGAT......................................................................................................	26	0	1	1.00	1	0	1	0
....................GAAGACATAAGCGACGCCGACAC..............................................................................................................................................................................	23	0	1	1.00	1	0	1	0
.........................................................................................................................GGGAATATTATCGGCCTCGTGAGG........................................................................	24	0	1	1.00	1	1	0	0
.................................................................................................GTGAGACGACCCGAGGATGGGC..................................................................................................	22	1	1	1.00	1	0	1	0
........................................................................................................................................CTCGTGAGGAACGATCTCCACCCAAAT......................................................	27	0	1	1.00	1	1	0	0
.............................................AAGACGTAAGCGACGCTGACA.......................................................................................................................................................	21	0	1	1.00	1	0	0	1
.......................................................................................................................................................................ACATACGGTCCGTCGATCGGAGATCAAT......................	28	1	2	0.50	1	1	0	0
......................................................................................................................................................................GACATACGGTCCATCGATCGGAGT...........................	24	1	2	0.50	1	1	0	0
..................................................................................................................................................................TTCAGACATACGGTCCATCGATCGGAGA...........................	28	0	2	0.50	1	1	0	0
.......................................................................................................................................................................ACATACGGTCCATCGATCGGAGA...........................	23	0	2	0.50	1	1	0	0
......................................................................................................................................................................GACATACGGTCCATCGATCGGC.............................	22	1	2	0.50	1	1	0	0
.......................................................................................................................................................................ACATACGGTCCATCGATCGGAGATC.........................	25	0	2	0.50	1	1	0	0
......................................................................................................................................................................GACATACGGTCCATCGATCGGAGATAT........................	27	2	2	0.50	1	1	0	0
......................................................................................................................................................................GACATACGGTCCATCGATCGGA.............................	22	0	2	0.50	1	1	0	0
......................................................................................................................................................................GACATACGTTCCATCGATC................................	19	1	2	0.50	1	0	1	0
......................................................................................................................................................................GACATACGGTCCATCGATCGGAGATCA........................	27	0	2	0.50	1	1	0	0
.......................................................................................................................................................................ACATACGGTCCATCGATCGGA.............................	21	0	2	0.50	1	1	0	0
..........................................................................................................................................................................TACAGTCCGACGATCGGAG............................	19	3	11	0.36	4	4	0	0
............................................................CTGACACCGAGCCGTTCCC..........................................................................................................................................	19	0	3	0.33	1	1	0	0
........................ACGTAAGCGACGCCGACACCGA...........................................................................................................................................................................	22	1	3	0.33	1	1	0	0
................................................ACGTAAGCGACGCCGACACCGA...................................................................................................................................................	22	1	3	0.33	1	1	0	0
......................................................................................................................................................................GGCATACGGTCCATCGATCGGAGATC.........................	26	1	4	0.25	1	0	1	0
.................................................CGTAAGCCAGGTTGACACC.....................................................................................................................................................	19	3	9	0.11	1	0	1	0

##################################################---------------------------------------------------------------------------------------------------------------------##################################################
CAAAAGAGACGGCCATCGTGGAAGACATAAGCGACGCCGACACCGAAGACGTAAGCGACGCTGACACCGAGCCGTTCCCCTGCACGGGATATGAAAGGCGAGACGACCCGAGGATGGGCACGGGAATATTATCGGCCTCGTGAGGAACGATCTCCACCCAAATTCAGACATACGGTCCATCGATCGGAGATCAATATCGCCGAAAGGTTGGGTGGAT
******************************************************((((.(((((.......((((.(((.....((((..................)))).....))).))))........))))).))))..(((......)))....**********************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

......................................................................................................................................................................GACATACGGTCCATCGATCGGAGATC.........................

4.00

........................................................................................................................................CTCGTGAGGAACGATCTCCACCC..........................................................

3.00

......................................................GCGACGCTGACACCGAGCCGTTCCCC.........................................................................................................................................

3.00

2.50

......................................................GCGACGCTGACACCGAGCCGT..............................................................................................................................................

2.00

......................................................GCGACGCTGACACCGAGCCGTTCC...........................................................................................................................................

2.00

............CGATCGTGGAAGACATAAGCGA.......................................................................................................................................................................................

1.00

................................................ACGTAAGCGACGCTGACACCGAGCC................................................................................................................................................

1.00

..............................................................................................................................TATTATCGGCCTCGTGAGGAA......................................................................

1.00

.....................AAGACATAAGCGACGCCGACACCGGA..........................................................................................................................................................................

1.00

................................................ACGTAAGCGACGCTGACACCGA...................................................................................................................................................

1.00

...........................................CGAAGACGTAAGCGACGCT...........................................................................................................................................................

1.00

............CCATCGTGGAAGACATAAGCGACGCC...................................................................................................................................................................................

1.00

.........................CATAAGCGACGCCGACACCGAAGACG......................................................................................................................................................................

1.00

............................................GAAGACGTAAGCGACGCTGACACCG....................................................................................................................................................

1.00

..............................................................................................AAGGCGAGACGACCCGAGGAT......................................................................................................

1.00

...........................................CGAAGACGTAAGCGACGCTGACA.......................................................................................................................................................

1.00

............................................................CTGACACCGAGCCGTTCCCCTGCAC....................................................................................................................................

1.00

.........................................................................................GATGAAAGGCGAGACGACCCGAGGAC......................................................................................................

1.00

...........GCCATCGTGGAAGACATAAGCGACGCC...................................................................................................................................................................................

1.00

........................................................................................................................................CTCGTGAGGAACGATCTCCACC...........................................................

1.00

..................................................................................................................................................................................................TATCGCCGAAAGGTTGGGTGG..

1.00

...........................................................................................................CCGAGGATGGGCACGGGAATATTATC....................................................................................

1.00

.........................................................................................TATGAAAGGCGAGACGACCCGAGGAT......................................................................................................

1.00

....................GAAGACATAAGCGACGCCGACAC..............................................................................................................................................................................

1.00

.........................................................................................................................GGGAATATTATCGGCCTCGTGAGG........................................................................

1.00

.................................................................................................GTGAGACGACCCGAGGATGGGC..................................................................................................

1.00

........................................................................................................................................CTCGTGAGGAACGATCTCCACCCAAAT......................................................

1.00

.............................................AAGACGTAAGCGACGCTGACA.......................................................................................................................................................

1.00

.......................................................................................................................................................................ACATACGGTCCGTCGATCGGAGATCAAT......................

0.50

..................................................................................................................................................................TTCAGACATACGGTCCATCGATCGGAGA...........................

0.50

.......................................................................................................................................................................ACATACGGTCCATCGATCGGAGA...........................

0.50

.......................................................................................................................................................................ACATACGGTCCATCGATCGGAGATC.........................

0.50

.......................................................................................................................................................................ACATACGGTCCATCGATCGGA.............................

0.50

..........................................................................................................................................................................TACAGTCCGACGATCGGAG............................

0.36

............................................................CTGACACCGAGCCGTTCCC..........................................................................................................................................

0.33

........................ACGTAAGCGACGCCGACACCGA...........................................................................................................................................................................

0.33

................................................ACGTAAGCGACGCCGACACCGA...................................................................................................................................................

0.33

0.25

.................................................CGTAAGCCAGGTTGACACC.....................................................................................................................................................

0.11

GTTTTCTCTGCCGGTAGCACCTTCTGTATTCGCTGCGGCTGTGGCTTCTGCATTCGCTGCGACTGTGGCTCGGCAAGGGGACGTGCCCTATACTTTCCGCTCTGCTGGGCTCCTACCCGTGCCCTTATAATAGCCGGAGCACTCCTTGCTAGAGGTGGGTTTAAGTCTGTATGCCAGGTAGCTAGCCTCTAGTTATAGCGGCTTTCCAACCCACCTA ********************************************************((((.(((((.......((((.(((.....((((..................)))).....))).))))........))))).))))..(((......)))....****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V041 embryo	V056 head
......................................................................................................................................................AGAGGTGGGTTTAAGTCTGTATGCCA.........................................	26	0	1	40.00	40	28	9	3	0	0
.......................................................................................................................................................GAGGTGGGTTTAAGTCTGTATGCCA.........................................	25	0	2	23.50	47	28	8	11	0	0
.........................................................................................................................................................GGTGGGTTTAAGTCTGTATGCCA.........................................	23	0	2	13.00	26	17	9	0	0	0
..........................................................................................................................................................GTGGGTTTAAGTCTGTATGCCA.........................................	22	0	2	8.00	16	12	4	0	0	0
........................................................................................................................GCCCTTATAATAGCCGGAGCACTCCT.......................................................................	26	0	1	7.00	7	7	0	0	0	0
............................................................................................................................................................GGGTTTAAGTCTGTATGCCA.........................................	20	0	2	6.50	13	5	8	0	0	0
.....................................................................................................................................................TAGAGGTGGGTTTAAGTCTGTATGCCA.........................................	27	0	1	6.00	6	3	2	1	0	0
....................................GGCTGTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................	28	0	1	4.00	4	4	0	0	0	0
...........................................................................................................................................................TGGGTTTAAGTCTGTATGCCA.........................................	21	0	2	3.50	7	6	1	0	0	0
........................................GTGGCTTCTGCATTCGCTGCGACTGT.......................................................................................................................................................	26	0	1	3.00	3	3	0	0	0	0
...TTCTCTGCCGGTAGCACCTTCTGTAT............................................................................................................................................................................................	26	0	1	3.00	3	2	1	0	0	0
......................................CTGTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................	26	0	1	3.00	3	2	1	0	0	0
.......................................TGTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................	25	0	1	3.00	3	2	0	0	1	0
.....................................GCTGTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................	27	0	1	3.00	3	3	0	0	0	0
.........GCCGGTAGCACCTTCTGTATTCGCT.......................................................................................................................................................................................	25	0	1	3.00	3	2	0	0	1	0
........................................................................................................................................................AGGTGGGTTTAAGTCTGTATGCCA.........................................	24	0	2	2.50	5	4	0	1	0	0
.........................................................................................................................................................GGTGGGTTTAAGTCTGTATGCCAGGT......................................	26	0	2	2.00	4	4	0	0	0	0
......................................................................................................................................................AGAGGTGGGTTTAAGTCT.................................................	18	0	1	2.00	2	2	0	0	0	0
..............................................TCTGCATTCGCTGCGACTGTGGCT...................................................................................................................................................	24	0	1	2.00	2	1	1	0	0	0
........................................GTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................	24	0	1	2.00	2	0	1	0	1	0
.......CTGCCGGTAGCACCTTCTGTATTCGCT.......................................................................................................................................................................................	27	0	1	2.00	2	2	0	0	0	0
.....CTCTGCCGGTAGCACCTTCTGTAT............................................................................................................................................................................................	24	0	1	2.00	2	1	1	0	0	0
.......................................................................................................................................................GAGGTGGGTTTAAGTCTGTATGCCAG........................................	26	0	2	2.00	4	2	1	0	1	0
......................................................................................................................................................AGAGGTGGGTTTAAGTCTGTATGCC..........................................	25	0	1	2.00	2	1	1	0	0	0
..................................................................................................................................................TGCTAGAGGTGGGTTTAAGTCTGT...............................................	24	0	1	1.00	1	1	0	0	0	0
..........................................GGCTTCTGCATTCGCTGCGACTGTGGCT...................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
..........................................................................AATGGGACGTGCCCTATACTTTCCGCT....................................................................................................................	27	1	1	1.00	1	0	1	0	0	0
.............................................TTCTGCATTCGCTGCGACTGTGGCT...................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.............................TCGCTGCGGCTGTGGCTTCTGCAT....................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
..........................................................................AAGGGGACGTGCCCTATACTTTCTGCT....................................................................................................................	27	1	1	1.00	1	0	1	0	0	0
......................................................................................................................................................AGAGGTGGGTTTAAGTCTGTATGCCAC........................................	27	1	1	1.00	1	0	1	0	0	0
......CCTGCCGGTAGCACCTTCTGTATTCGCT.......................................................................................................................................................................................	28	1	1	1.00	1	0	1	0	0	0
....................................................................................................................................................CTAGAGGTGGGTTTAAGTCTGTATGCCA.........................................	28	0	1	1.00	1	1	0	0	0	0
..............................CGCTGCGGCTGTGGCTTCTGCATTC..................................................................................................................................................................	25	0	1	1.00	1	0	0	0	1	0
............................................................................................................GCTCCTACCCGTGCCCTTATAAT......................................................................................	23	0	1	1.00	1	1	0	0	0	0
...................................CGGCTGGGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................	29	1	1	1.00	1	0	1	0	0	0
.............................................CTCTGCATTCGCTGCGACTGTGGCTCGG................................................................................................................................................	28	1	1	1.00	1	1	0	0	0	0
..........................................................................AAGGGGACGTGCCCTATACTTTTCGCT....................................................................................................................	27	1	1	1.00	1	0	1	0	0	0
..................................GCGGCTGTGGCTTCTGCATT...................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
......TCTGCCGGTAGCACCTTCTGTATT...........................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
..........................................................................................................GGGCTCCTACCCGTGCCCTTATAAT......................................................................................	25	0	1	1.00	1	1	0	0	0	0
.............................................................CTTTTGGCTCGGCAAGGGGACGT.....................................................................................................................................	23	3	1	1.00	1	1	0	0	0	0
..........................................GGCTTCTGCATTCGCTGCGACTGT.......................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................GGTTTAAGTCTGTATGCCA.........................................	19	0	2	1.00	2	2	0	0	0	0
.............................................................................................TTTCCGCTCTGCTGGGCTCCTACCCGT.................................................................................................	27	0	1	1.00	1	1	0	0	0	0
......................................................................................................................................CGGAGCACTCCTTGCTAGAGGTGGGTTT.......................................................	28	0	1	1.00	1	1	0	0	0	0
..........................................................................................TACTTTCCGCTCTGCTGGGCT..........................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................GGTGGGTTTAAGTCTGTATGCC..........................................	22	0	2	1.00	2	2	0	0	0	0
.....................................................................TCGGCAAGGGGACGTGCCCTATACTT..........................................................................................................................	26	0	1	1.00	1	0	1	0	0	0
............................................................................GGGGACGTGCCCTATACTTTCCGCT....................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
...................................CGGCTGTGGCTTCTGCAGT...................................................................................................................................................................	19	1	1	1.00	1	0	1	0	0	0
.............................TCGCTGCGGCTGTGGCTTCTGCATTC..................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................AAGAGGTGGGTTTAAGTCTGTATGCCA.........................................	27	1	1	1.00	1	1	0	0	0	0
.............................TCGATGCGGCTGTGGCTTCTGCAT....................................................................................................................................................................	24	1	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................TAGAGGTGGGTTTAAGTCTGTATGCC..........................................	26	0	1	1.00	1	1	0	0	0	0
..TTTCTCTGCCGGTAGCACCTTCTGTATTC..........................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0
....................................................................................................TCTGCTGGGCTCCTACCCGTGCCC.............................................................................................	24	0	1	1.00	1	1	0	0	0	0
.........................................TGGCTTCTGCATTCGCTGCGACTGT.......................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
....................................................................................GCCCTATACTTTCCGCTCTGCTGGGC...........................................................................................................	26	0	1	1.00	1	1	0	0	0	0
............GGTAGCACCTTCTGTATTCGCT.......................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
..............................................................................GGACGTGCCCTATACTTTCCGCT....................................................................................................................	23	0	1	1.00	1	0	1	0	0	0
.....................................................................................................CTGCTGGGCTCCTACCCGTGCCCTT...........................................................................................	25	0	1	1.00	1	0	1	0	0	0
......................TCTGTATTCGCTGCGGCTGTGGCT...........................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
...............................................................................................CCCGCTCTGCTGGGCTCCTACCCGT.................................................................................................	25	1	1	1.00	1	0	1	0	0	0
.............................................................................GGGACGTGCCCTATACTTTCCCCT....................................................................................................................	24	1	1	1.00	1	0	1	0	0	0
............................................................................................................................................................GGGTTTAAGTCTGTATGCCAG........................................	21	0	2	1.00	2	1	1	0	0	0
........TGCCGGTAGCACCTTCTGTATTCG.........................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
....................................................................................GCCCTATACTTTCCGCTCTGCTGGGCT..........................................................................................................	27	0	1	1.00	1	1	0	0	0	0
..TTTCTCTGCCGGTAGCACCTTCTGT..............................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.......CTGCCGGTAGCACCTTCTGTATTCG.........................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................GAGGTGGGTTTAAGTCTGTATGCC..........................................	24	0	2	1.00	2	2	0	0	0	0
.............GTAGCACCTTCTGTATTCGCT.......................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.....CTCTGCCGGTAGCACCTTCTGTATT...........................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................TGCCCTTATAATAGCCGGAGCACTCCT.......................................................................	27	0	1	1.00	1	1	0	0	0	0
....................................AGCTGTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................	28	1	1	1.00	1	1	0	0	0	0
...CTCTCTGCCGGTAGCACCTTCTGTAT............................................................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................GGTTTAAGTCTGTATGCCAGGTA.....................................	23	0	2	0.50	1	1	0	0	0	0
........................................................................................................................................................................GTATGCCAGGTAGCTAGCCTCTAGTT.......................	26	0	2	0.50	1	1	0	0	0	0
......................................................................................................................................................TGAGGTGGGTTTAAGTCTGTATGCCA.........................................	26	1	2	0.50	1	1	0	0	0	0
.........................................................................................................................................................GGTGGGTTTAAGTCCGTATGCCGC........................................	24	3	2	0.50	1	0	0	0	1	0
.........................................................................................................................................................GGTGGGTTTAAGTCTGTATGCGA.........................................	23	1	2	0.50	1	0	1	0	0	0
.........................................................................................................................................................GGTGGGTTTAAGTCTGTATGCCAGGTA.....................................	27	0	2	0.50	1	1	0	0	0	0
..........................................................................................................................................................................ATGCCAGGTAGCTAGCCTCTAGTTAT.....................	26	0	2	0.50	1	1	0	0	0	0
.........................................................................................................................................................GGCGGGTTTAAGTCTGTATGCCA.........................................	23	1	2	0.50	1	1	0	0	0	0
............................................................................................................................................................GGGTTTAAGTCTGTATGCCAGGTAGC...................................	26	0	2	0.50	1	0	1	0	0	0
............................................................................................................................................................GGGTTTAAGTCTGTATGCCAGTT......................................	23	1	2	0.50	1	0	1	0	0	0
....................................................................................................................................................................GTCTGTATGCCAGGTAGCTAGCCTCT...........................	26	0	2	0.50	1	1	0	0	0	0
............................................................................................................................................................CGGTTTACGTCTGTATGCCA.........................................	20	2	2	0.50	1	0	1	0	0	0
.......................................................................................................................................................TAGGTGGGTTTAAGTCTGTATGCCA.........................................	25	1	2	0.50	1	1	0	0	0	0
.......................................................................................................................................................GAGGTGGGTTTAAGTCTGTATG............................................	22	0	2	0.50	1	1	0	0	0	0
...........................................................................................................................................................TGGGTTAAAGTCTGTATGCCA.........................................	21	1	2	0.50	1	0	1	0	0	0
.......................................................................................................................................................CAGGTGGGTTTAAGTCTGTATTCCA.........................................	25	2	2	0.50	1	0	1	0	0	0
.........................................................................................................................................................................TACGCCCCGTAGCTAGCCTCTAG.........................	23	3	2	0.50	1	1	0	0	0	0
........................................................................................................................................................AGGTGGGTTTAAGTCTGTATGCCAC........................................	25	1	2	0.50	1	0	1	0	0	0
.............................................................................................................................................................GGTTTAAGTCTGTATGCCAG........................................	20	0	2	0.50	1	1	0	0	0	0
..........................................................................................................................................................GTGGGTTTAAGTCTGTATGCCAG........................................	23	0	2	0.50	1	1	0	0	0	0
.......................................................................................................................................................GAAGTGGGTTTAAGTCTGTATGCCA.........................................	25	1	2	0.50	1	1	0	0	0	0
................................................................................................................................................................................GGTAGCTAGCCTCTAGTT.......................	18	0	4	0.25	1	1	0	0	0	0
................................................................................................................................................................................GGTAGCTAGCCTCTAGTTATAGCGGCTT.............	28	0	4	0.25	1	1	0	0	0	0
............................................................................................................................................................................GCCAGGTAGCTAGCCTCTAGT........................	21	0	4	0.25	1	1	0	0	0	0
............................................................................................................................................................................GCCAGGTAGCTAGCCTCTAGTTATAGC..................	27	0	4	0.25	1	1	0	0	0	0
.............................................................................................................................................................................CCAGGTAGCTAGCCTCTAGTT.......................	21	0	4	0.25	1	1	0	0	0	0
................................................................................................................................................................................GGTAGCTAGCCTCTAGTTA......................	19	0	4	0.25	1	1	0	0	0	0
...................................................................................................................................................................................AGCTAGCCGCTAGTTTTCGCG.................	21	3	5	0.20	1	0	0	0	0	1
........................................................................................................................................................AGGGGGGTATAAGTCTGT...............................................	18	2	8	0.13	1	0	1	0	0	0

GTTTTCTCTGCCGGTAGCACCTTCTGTATTCGCTGCGGCTGTGGCTTCTGCATTCGCTGCGACTGTGGCTCGGCAAGGGGACGTGCCCTATACTTTCCGCTCTGCTGGGCTCCTACCCGTGCCCTTATAATAGCCGGAGCACTCCTTGCTAGAGGTGGGTTTAAGTCTGTATGCCAGGTAGCTAGCCTCTAGTTATAGCGGCTTTCCAACCCACCTA
**********************************************************((((.(((((.......((((.(((.....((((..................)))).....))).))))........))))).))))..(((......)))....******************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

V041
embryo

V056
head

......................................................................................................................................................AGAGGTGGGTTTAAGTCTGTATGCCA.........................................

40.00

.......................................................................................................................................................GAGGTGGGTTTAAGTCTGTATGCCA.........................................

23.50

.........................................................................................................................................................GGTGGGTTTAAGTCTGTATGCCA.........................................

13.00

..........................................................................................................................................................GTGGGTTTAAGTCTGTATGCCA.........................................

8.00

........................................................................................................................GCCCTTATAATAGCCGGAGCACTCCT.......................................................................

7.00

............................................................................................................................................................GGGTTTAAGTCTGTATGCCA.........................................

6.50

.....................................................................................................................................................TAGAGGTGGGTTTAAGTCTGTATGCCA.........................................

6.00

....................................GGCTGTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................

4.00

...........................................................................................................................................................TGGGTTTAAGTCTGTATGCCA.........................................

3.50

........................................GTGGCTTCTGCATTCGCTGCGACTGT.......................................................................................................................................................

3.00

...TTCTCTGCCGGTAGCACCTTCTGTAT............................................................................................................................................................................................

3.00

......................................CTGTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................

3.00

.......................................TGTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................

3.00

.....................................GCTGTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................

3.00

.........GCCGGTAGCACCTTCTGTATTCGCT.......................................................................................................................................................................................

3.00

........................................................................................................................................................AGGTGGGTTTAAGTCTGTATGCCA.........................................

2.50

.........................................................................................................................................................GGTGGGTTTAAGTCTGTATGCCAGGT......................................

2.00

......................................................................................................................................................AGAGGTGGGTTTAAGTCT.................................................

2.00

..............................................TCTGCATTCGCTGCGACTGTGGCT...................................................................................................................................................

2.00

........................................GTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................

2.00

.......CTGCCGGTAGCACCTTCTGTATTCGCT.......................................................................................................................................................................................

2.00

.....CTCTGCCGGTAGCACCTTCTGTAT............................................................................................................................................................................................

2.00

.......................................................................................................................................................GAGGTGGGTTTAAGTCTGTATGCCAG........................................

2.00

......................................................................................................................................................AGAGGTGGGTTTAAGTCTGTATGCC..........................................

2.00

..................................................................................................................................................TGCTAGAGGTGGGTTTAAGTCTGT...............................................

1.00

..........................................GGCTTCTGCATTCGCTGCGACTGTGGCT...................................................................................................................................................

1.00

..........................................................................AATGGGACGTGCCCTATACTTTCCGCT....................................................................................................................

1.00

.............................................TTCTGCATTCGCTGCGACTGTGGCT...................................................................................................................................................

1.00

.............................TCGCTGCGGCTGTGGCTTCTGCAT....................................................................................................................................................................

1.00

..........................................................................AAGGGGACGTGCCCTATACTTTCTGCT....................................................................................................................

1.00

......................................................................................................................................................AGAGGTGGGTTTAAGTCTGTATGCCAC........................................

1.00

......CCTGCCGGTAGCACCTTCTGTATTCGCT.......................................................................................................................................................................................

1.00

....................................................................................................................................................CTAGAGGTGGGTTTAAGTCTGTATGCCA.........................................

1.00

..............................CGCTGCGGCTGTGGCTTCTGCATTC..................................................................................................................................................................

1.00

............................................................................................................GCTCCTACCCGTGCCCTTATAAT......................................................................................

1.00

...................................CGGCTGGGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................

1.00

.............................................CTCTGCATTCGCTGCGACTGTGGCTCGG................................................................................................................................................

1.00

..........................................................................AAGGGGACGTGCCCTATACTTTTCGCT....................................................................................................................

1.00

..................................GCGGCTGTGGCTTCTGCATT...................................................................................................................................................................

1.00

......TCTGCCGGTAGCACCTTCTGTATT...........................................................................................................................................................................................

1.00

..........................................................................................................GGGCTCCTACCCGTGCCCTTATAAT......................................................................................

1.00

.............................................................CTTTTGGCTCGGCAAGGGGACGT.....................................................................................................................................

1.00

..........................................GGCTTCTGCATTCGCTGCGACTGT.......................................................................................................................................................

1.00

.............................................................................................................................................................GGTTTAAGTCTGTATGCCA.........................................

1.00

.............................................................................................TTTCCGCTCTGCTGGGCTCCTACCCGT.................................................................................................

1.00

......................................................................................................................................CGGAGCACTCCTTGCTAGAGGTGGGTTT.......................................................

1.00

..........................................................................................TACTTTCCGCTCTGCTGGGCT..........................................................................................................

1.00

.........................................................................................................................................................GGTGGGTTTAAGTCTGTATGCC..........................................

1.00

.....................................................................TCGGCAAGGGGACGTGCCCTATACTT..........................................................................................................................

1.00

............................................................................GGGGACGTGCCCTATACTTTCCGCT....................................................................................................................

1.00

...................................CGGCTGTGGCTTCTGCAGT...................................................................................................................................................................

1.00

.............................TCGCTGCGGCTGTGGCTTCTGCATTC..................................................................................................................................................................

1.00

.....................................................................................................................................................AAGAGGTGGGTTTAAGTCTGTATGCCA.........................................

1.00

.............................TCGATGCGGCTGTGGCTTCTGCAT....................................................................................................................................................................

1.00

..TTTCTCTGCCGGTAGCACCTTCTGTATTC..........................................................................................................................................................................................

1.00

....................................................................................................TCTGCTGGGCTCCTACCCGTGCCC.............................................................................................

1.00

.........................................TGGCTTCTGCATTCGCTGCGACTGT.......................................................................................................................................................

1.00

....................................................................................GCCCTATACTTTCCGCTCTGCTGGGC...........................................................................................................

1.00

............GGTAGCACCTTCTGTATTCGCT.......................................................................................................................................................................................

1.00

..............................................................................GGACGTGCCCTATACTTTCCGCT....................................................................................................................

1.00

.....................................................................................................CTGCTGGGCTCCTACCCGTGCCCTT...........................................................................................

1.00

......................TCTGTATTCGCTGCGGCTGTGGCT...........................................................................................................................................................................

1.00

...............................................................................................CCCGCTCTGCTGGGCTCCTACCCGT.................................................................................................

1.00

.............................................................................GGGACGTGCCCTATACTTTCCCCT....................................................................................................................

1.00

............................................................................................................................................................GGGTTTAAGTCTGTATGCCAG........................................

1.00

........TGCCGGTAGCACCTTCTGTATTCG.........................................................................................................................................................................................

1.00

....................................................................................GCCCTATACTTTCCGCTCTGCTGGGCT..........................................................................................................

1.00

..TTTCTCTGCCGGTAGCACCTTCTGT..............................................................................................................................................................................................

1.00

.......CTGCCGGTAGCACCTTCTGTATTCG.........................................................................................................................................................................................

1.00

.......................................................................................................................................................GAGGTGGGTTTAAGTCTGTATGCC..........................................

1.00

.............GTAGCACCTTCTGTATTCGCT.......................................................................................................................................................................................

1.00

.....CTCTGCCGGTAGCACCTTCTGTATT...........................................................................................................................................................................................

1.00

.......................................................................................................................TGCCCTTATAATAGCCGGAGCACTCCT.......................................................................

1.00

....................................AGCTGTGGCTTCTGCATTCGCTGCGACT.........................................................................................................................................................

1.00

...CTCTCTGCCGGTAGCACCTTCTGTAT............................................................................................................................................................................................

1.00

.............................................................................................................................................................GGTTTAAGTCTGTATGCCAGGTA.....................................

0.50

........................................................................................................................................................................GTATGCCAGGTAGCTAGCCTCTAGTT.......................

0.50

......................................................................................................................................................TGAGGTGGGTTTAAGTCTGTATGCCA.........................................

0.50

.........................................................................................................................................................GGTGGGTTTAAGTCCGTATGCCGC........................................

0.50

.........................................................................................................................................................GGTGGGTTTAAGTCTGTATGCGA.........................................

0.50

.........................................................................................................................................................GGTGGGTTTAAGTCTGTATGCCAGGTA.....................................

0.50

..........................................................................................................................................................................ATGCCAGGTAGCTAGCCTCTAGTTAT.....................

0.50

.........................................................................................................................................................GGCGGGTTTAAGTCTGTATGCCA.........................................

0.50

............................................................................................................................................................GGGTTTAAGTCTGTATGCCAGGTAGC...................................

0.50

............................................................................................................................................................GGGTTTAAGTCTGTATGCCAGTT......................................

0.50

....................................................................................................................................................................GTCTGTATGCCAGGTAGCTAGCCTCT...........................

0.50

............................................................................................................................................................CGGTTTACGTCTGTATGCCA.........................................

0.50

.......................................................................................................................................................TAGGTGGGTTTAAGTCTGTATGCCA.........................................

0.50

.......................................................................................................................................................GAGGTGGGTTTAAGTCTGTATG............................................

0.50

...........................................................................................................................................................TGGGTTAAAGTCTGTATGCCA.........................................

0.50

.......................................................................................................................................................CAGGTGGGTTTAAGTCTGTATTCCA.........................................

0.50

.........................................................................................................................................................................TACGCCCCGTAGCTAGCCTCTAG.........................

0.50

........................................................................................................................................................AGGTGGGTTTAAGTCTGTATGCCAC........................................

0.50

.............................................................................................................................................................GGTTTAAGTCTGTATGCCAG........................................

0.50

..........................................................................................................................................................GTGGGTTTAAGTCTGTATGCCAG........................................

0.50

.......................................................................................................................................................GAAGTGGGTTTAAGTCTGTATGCCA.........................................

0.50

................................................................................................................................................................................GGTAGCTAGCCTCTAGTT.......................

0.25

................................................................................................................................................................................GGTAGCTAGCCTCTAGTTATAGCGGCTT.............

0.25

............................................................................................................................................................................GCCAGGTAGCTAGCCTCTAGT........................

0.25

............................................................................................................................................................................GCCAGGTAGCTAGCCTCTAGTTATAGC..................

0.25

.............................................................................................................................................................................CCAGGTAGCTAGCCTCTAGTT.......................

0.25

................................................................................................................................................................................GGTAGCTAGCCTCTAGTTA......................

0.25

...................................................................................................................................................................................AGCTAGCCGCTAGTTTTCGCG.................

0.20

........................................................................................................................................................AGGGGGGTATAAGTCTGT...............................................

0.13

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:26647851-26648067 -	dmo_1262	CAAAAGAGACGGCCATCGTGGAAGACATAAGCGACGCCGACACCGAAGACGTAAGCGACGCTGACACCGAGCCGTTCCCCTGCACGGGATATGAAAGGCGA---GACGACCCGAGGATGGGCACGGGAATATTATC---GGCCTCGTGAGGAACGATCTCCACCCAAATTCAGACATACGGTCCATCGATCGGAGATCAATATCGCCGAAAGGTTGGGTGGAT
droVir3	scaffold_12736:519509-519711 +		CGAAATTAGCAGCAT-CTCGTCAGAC------------------GAAGACGTCAGCAGCGGAGACACCGAGCCTTTCCCCGGGCCGGGAGCCGGAGGCCGCCCGCGCGACCCC-CGTCGGGGACGCGAGTACTACCAAAGACAACGACAAGAAGGGCCGCCTCACCAGTTCCGCCATACCCTATACTCCCGGCGGACCAACTTCATGGAGAGGCTGGACGGGA
droAna3	scaffold_13122:1638-1688 -		CAACGGCGACGGCAGCGGCAGCAGAA--------------GAGCAGCGAAGAAGACAAAAT-------------------------------------------------------------------------------------------------------------------------------------------------C-------------AAC
droKik1	scf7180000302101:3827-3894 -		CCGT------------CGAGGTCGTCACCATCGACGCCGACAACATGGAGGAAGCGAACACCGACACCACGCCGGGCCCC-----------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453172:200698-200712 -		GAATTTAAGGGACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000778098:9596-9661 -		ACAG--------CCGGCCTAAGTGACATAAAGGACGACGACACCGACGACG--------------------ACGAGCCAC--------------------------------------------------------------------------------------------------------------------CTGATGCCATC-------------GAG
droEre2	scaffold_4929:22131713-22131770 -		CCAC------------CGCCGAAGACGCAGCCGCCGCCGACACCACGGACGCAGCCGCCGTTGCCACGGA---------------------------------------------------------------------------------------------------------------------------------------------------------

Species

Coordinate

Alignment

droMoj3

scaffold_6496:26647851-26648067 -

dmo_1262

CAAAAGAGACGGCCATCGTGGAAGACATAAGCGACGCCGACACCGAAGACGTAAGCGACGCTGACACCGAGCCGTTCCCCTGCACGGGATATGAAAGGCGA---GACGACCCGAGGATGGGCACGGGAATATTATC---GGCCTCGTGAGGAACGATCTCCACCCAAATTCAGACATACGGTCCATCGATCGGAGATCAATATCGCCGAAAGGTTGGGTGGAT

droVir3

scaffold_12736:519509-519711 +

CGAAATTAGCAGCAT-CTCGTCAGAC------------------GAAGACGTCAGCAGCGGAGACACCGAGCCTTTCCCCGGGCCGGGAGCCGGAGGCCGCCCGCGCGACCCC-CGTCGGGGACGCGAGTACTACCAAAGACAACGACAAGAAGGGCCGCCTCACCAGTTCCGCCATACCCTATACTCCCGGCGGACCAACTTCATGGAGAGGCTGGACGGGA

droAna3

scaffold_13122:1638-1688 -

CAACGGCGACGGCAGCGGCAGCAGAA--------------GAGCAGCGAAGAAGACAAAAT-------------------------------------------------------------------------------------------------------------------------------------------------C-------------AAC

droKik1

scf7180000302101:3827-3894 -

CCGT------------CGAGGTCGTCACCATCGACGCCGACAACATGGAGGAAGCGAACACCGACACCACGCCGGGCCCC-----------------------------------------------------------------------------------------------------------------------------------------------

droFic1

scf7180000453172:200698-200712 -

GAATTTAAGGGACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

droRho1

scf7180000778098:9596-9661 -

ACAG--------CCGGCCTAAGTGACATAAAGGACGACGACACCGACGACG--------------------ACGAGCCAC--------------------------------------------------------------------------------------------------------------------CTGATGCCATC-------------GAG

droEre2

scaffold_4929:22131713-22131770 -

CCAC------------CGCCGAAGACGCAGCCGCCGCCGACACCACGGACGCAGCCGCCGTTGCCACGGA---------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CAAAAGAGACGGCCATCGTGGAAGACATAAGCGACGCCGACACCGAAGACGTAAGCGACGCTGACACCGAGCCGTTCCCCTGCACGGGATATGAAAGGCGA---GACGACCCGAGGATGGGCACGGGAATATTATC---GGCCTCGTGAGGAACGATCTCCACCCAAATTCAGACATACGGTCCATCGATCGGAGATCAATATCGCCGAAAGGTTGGGTGGAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................GACATACGGTCCATCGATCGGAGATC.........................	26	2	4.00	8	7	0	0	0	0	1
..............................................................................................................................................CTCGTGAGGAACGATCTCCACCC..........................................................	23	1	3.00	3	2	0	0	0	1	0
......................................................GCGACGCTGACACCGAGCCGTTCCCC...............................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0
............................................................................................................................................................................GACATACGGTCCATCGATCGGAGA...........................	24	2	3.00	6	2	0	0	0	3	1
............................................................................................................................................................................GACATACGGTCCATCGATCGGAG............................	23	2	2.50	5	5	0	0	0	0	0
......................................................GCGACGCTGACACCGAGCCGT....................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
......................................................GCGACGCTGACACCGAGCCGTTCC.................................................................................................................................................	24	1	2.00	2	1	0	0	0	1	0
................................................ACGTAAGCGACGCTGACACCGAGCC......................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................TATTATC---GGCCTCGTGAGGAA......................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................GACATACGGTCCATCGATCGG..............................	21	2	1.00	2	2	0	0	0	0	0
................................................ACGTAAGCGACGCTGACACCGA.........................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................GACATACGGTCCATCGATCGGAGAT..........................	25	2	1.00	2	2	0	0	0	0	0
...........................................CGAAGACGTAAGCGACGCT.................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............CCATCGTGGAAGACATAAGCGACGCC.........................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................CATAAGCGACGCCGACACCGAAGACG............................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................GAAGACGTAAGCGACGCTGACACCG..........................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................AAGGCGA---GACGACCCGAGGAT.........................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...........................................CGAAGACGTAAGCGACGCTGACA.............................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............................................................CTGACACCGAGCCGTTCCCCTGCAC..........................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........GCCATCGTGGAAGACATAAGCGACGCC.........................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................CTCGTGAGGAACGATCTCCACC...........................................................	22	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................TATCGCCGAAAGGTTGGGTGG..	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................CCGAGGATGGGCACGGGAATATTATC---....................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................TATGAAAGGCGA---GACGACCCGAGGAT.........................................................................................................	26	1	1.00	1	0	0	0	0	1	0
....................GAAGACATAAGCGACGCCGACAC....................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
............................................................................................................................GGGAATATTATC---GGCCTCGTGAGG........................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................CTCGTGAGGAACGATCTCCACCCAAAT......................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................AAGACGTAAGCGACGCTGACA.............................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................GACATACGGTCCATCGATCGGAGT...........................	24	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................TTCAGACATACGGTCCATCGATCGGAGA...........................	28	2	0.50	1	1	0	0	0	0	0
.............................................................................................................................................................................ACATACGGTCCATCGATCGGAGA...........................	23	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................................................GACATACGGTCCATCGATCGGC.............................	22	2	0.50	1	1	0	0	0	0	0
.............................................................................................................................................................................ACATACGGTCCATCGATCGGAGATC.........................	25	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................................................GACATACGGTCCATCGATCGGAGATAT........................	27	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................................................GACATACGGTCCATCGATCGGA.............................	22	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................................................GACATACGGTCCATCGATCGGAGATCA........................	27	2	0.50	1	1	0	0	0	0	0
.............................................................................................................................................................................ACATACGGTCCATCGATCGGA.............................	21	2	0.50	1	1	0	0	0	0	0
............................................................CTGACACCGAGCCGTTCCC................................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0

droVir3

CGAAATTAGCAGCAT-CTCGTCAGAC------------------GAAGACGTCAGCAGCGGAGACACCGAGCCTTTCCCCGGGCCGGGAGCCGGAGGCCGCCCGCGCGACCCC-CGTCGGGGACGCGAGTACTACCAAAGACAACGACAAGAAGGGCCGCCTCACCAGTTCCGCCATACCCTATACTCCCGGCGGACCAACTTCATGGAGAGGCTGGACGGGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................GAC------------------GAAGACGTCAGCAGCGGAGACA.............................................................................................................................................................	25	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GAC------------------GAAGACGTCAGCAGCGGAGAC..............................................................................................................................................................	24	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GAC------------------GAAGACGTCAGCAGCGGAGAA..............................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GAC------------------GAAGACGTCAGCAGCGGAGACACC...........................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GAC------------------GAAGACGTCAGCAGCGGAG................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GAC------------------GAAGACGTCAGCAGCGGA.................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CAGAC------------------GAAGACGTCAGCAGCGGAG................................................................................................................................................................	24	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GAC------------------GAAGACGTCAGCAGCGGAGT...............................................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................CGAGCCTTTCCCCGGGCCGGG.......................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droAna3

CAACGGCGACGGCAGCGGCAGCAGAA--------------GAGCAGCGAAGAAGACAAAAT-------------------------------------------------------------------------------------------------------------------------------------------------C-------------AAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droKik1

CCGT------------CGAGGTCGTCACCATCGACGCCGACAACATGGAGGAAGCGAACACCGACACCACGCCGGGCCCC-----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAATTTAAGGGACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACAG--------CCGGCCTAAGTGACATAAAGGACGACGACACCGACGACG--------------------ACGAGCCAC--------------------------------------------------------------------------------------------------------------------CTGATGCCATC-------------GAG	Size	Hit Count	Total Norm	Total
No Reads

droEre2

CCAC------------CGCCGAAGACGCAGCCGCCGCCGACACCACGGACGCAGCCGCCGTTGCCACGGA---------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_1262

scaffold_6496:26647901-26648017 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.4	-27.3	-27.2