ID:

dmo_126

 Coordinate:

scaffold_6328:2302261-2302329 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-42.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGCAGGTTTATAAAAGCCAATCAGGTGAACTATGTGTATCAATTGTGAACAGTAGCCCATTAGGAAGCCCACATTCGTTGGCAAAATACAAACTGTGGGCTGCCCAGTGGGCACTATTCATATTTGAATTTCCCGCCAACCAATTGACAATTAACTTGGACTTGATAAT

***********************************...((((.((((((.(((.(((((((.((.((((((((....(((........)))..)))))))).)).)))))))))).)))))).)))).....************************************* 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V110

male body		 M046

female body

 V056

head

 V049

head

 V041

embryo
..................................................AGTAGCCCATTAGGAAGCCCACA................................................................................................ 23 0 1 26.00 26 11 7 3 1 3 1
..................................................AGTAGCCCATTGGGAAGCCCACA................................................................................................ 23 1 1 5.00 5 0 2 0 3 0 0
...............................................................................................TGGGCTGCCCAGTGGGCACTAT.................................................... 22 0 1 3.00 3 1 0 1 1 0 0
..................................................AGTAGCCCATTAGGAAGCCCA.................................................................................................. 21 0 1 3.00 3 0 2 0 0 1 0
..................................................ATTAGCCCATTAGGAAGCCCACA................................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0
..................................................AGTAGCCCATTAGGAAGCCC................................................................................................... 20 0 1 2.00 2 0 0 1 1 0 0
..................................................AGTAGCCCATTAGGAAGCCCAC................................................................................................. 22 0 1 2.00 2 0 1 1 0 0 0
...................................................GTAGCCCATTAGGAAGCCCACA................................................................................................ 22 0 1 2.00 2 1 0 1 0 0 0
..................................................AGTAGCCCATTAGAAAGCCCACA................................................................................................ 23 1 1 1.00 1 0 0 0 1 0 0
..................................................AGCAGCCCATTAGGAAACCCACA................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................TGGGCTGCCCAGTGGGCACTATAA.................................................. 24 2 1 1.00 1 0 0 1 0 0 0
........................................................................ATTCGTTGGCAAAATACAAACTGT......................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................TGGGCTGCCCAGTGGGCACT...................................................... 20 0 1 1.00 1 0 0 1 0 0 0
..................................................AGTAGCCCATTGGGAAGCCCA.................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0
..................................................ATTAGCCCATTAGGAAGCCCAC................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................TGGGCTGCCCAGTGGGCACTA..................................................... 21 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................TGGGCTGCCCAGTGGGCACTATT................................................... 23 0 1 1.00 1 0 0 0 0 0 1
..................................................AGTAGCCCATTAGGAAGCCCATC................................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0
..................................................AGTAGCCCATTGGGAAGCCCAC................................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0
...............................................................................................TTGGCTGCCCAGTGGGCACTAT.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
....................................................TAGCCCATTAGGAAGCCCACA................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
..................................................AATAGGCCATTAGGATGCCCA.................................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0

Anti-sense strand reads

GCGTCCAAATATTTTCGGTTAGTCCACTTGATACACATAGTTAACACTTGTCATCGGGTAATCCTTCGGGTGTAAGCAACCGTTTTATGTTTGACACCCGACGGGTCACCCGTGATAAGTATAAACTTAAAGGGCGGTTGGTTAACTGTTAATTGAACCTGAACTATTA

*************************************...((((.((((((.(((.(((((((.((.((((((((....(((........)))..)))))))).)).)))))))))).)))))).)))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6328:2302211-2302379 - dmo_126 confident CGCAGGTTTATAAAAGCCAATCAGGTGAACTATGTGTATCAATTGTGAACAGTAGCCCATTAGGAAGCCCACATTCGTTGGCAAAATACAAACTGTGGGCTGCCCAGTGGGCACTATTCATATTTGAATTTCCCGCCAACCAATTGACAATTAACTTGGACTTGATAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CGCAGGTTTATAAAAGCCAATCAGGTGAACTATGTGTATCAATTGTGAACAGTAGCCCATTAGGAAGCCCACATTCGTTGGCAAAATACAAACTGTGGGCTGCCCAGTGGGCACTATTCATATTTGAATTTCCCGCCAACCAATTGACAATTAACTTGGACTTGATAATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................AGTAGCCCATTAGGAAGCCCACA................................................................................................23126.00263131117
...............................................................................................TGGGCTGCCCAGTGGGCACTAT....................................................2213.003100110
..................................................AGTAGCCCATTAGGAAGCCCA..................................................................................................2113.003001002
..................................................AGTAGCCCATTAGGAAGCCC...................................................................................................2012.002100100
..................................................AGTAGCCCATTAGGAAGCCCAC.................................................................................................2212.002100001
...................................................GTAGCCCATTAGGAAGCCCACA................................................................................................2212.002100010
...............................................................................................TGGGCTGCCCAGTGGGCACTATAA..................................................2411.001100000
........................................................................ATTCGTTGGCAAAATACAAACTGT.........................................................................2411.001100000
...............................................................................................TGGGCTGCCCAGTGGGCACT......................................................2011.001100000
...............................................................................................TGGGCTGCCCAGTGGGCACTA.....................................................2111.001100000
...............................................................................................TGGGCTGCCCAGTGGGCACTATT...................................................2311.001010000
..................................................AGTAGCCCATTAGGAAGCCCATC................................................................................................2311.001000001
....................................................TAGCCCATTAGGAAGCCCACA................................................................................................2111.001000010

Generated: 10/20/2015 at 07:28 PM