dmo_1258

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TAGATTCTGGCGAATAGCGCCCAGAATCTTTCATGTGTCCCCGCTGCGCCCGGACTCACGGAGTTGACCAGTTGCTGTTCTTTCAGCCAATCCTGTTCACCTGCCTCCCGACGCGCAGCCAAGTCGGCGGTGGTCGCAACCCAGCCTGGGCGTATCACACTCCTCAGAGTCTTTAGTGTGATTCCACTGTCTTCCACCTAGAATCCGAAAAGAAATCTTCCCCATGAAACTACGCGCCACCACCTCAATCT ****************************************************************************************.................(((((..........)))))(((((((((((.....(((((((.((.....)).)).))).))......)))))..)))))).........***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo	V110 male body	V056 head	V049 head
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCCGA...........................................	27	0	1	25.00	25	22	3	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCCG............................................	26	0	1	18.00	18	17	0	1	0	0	0
................................................................................................................................................................................................................................TGAAACTACGCGCCACCACCTCAATC.	26	0	1	17.00	17	0	14	3	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCCGAAA.........................................	29	0	1	14.00	14	8	6	0	0	0	0
..........................................................................................TCCTGTTCACCTGCCTCCCGACGCGC.......................................................................................................................................	26	0	1	13.00	13	8	4	1	0	0	0
..........................................................................................TCCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................	24	0	1	11.00	11	4	7	0	0	0	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAAA.........................................	27	0	1	9.00	9	0	9	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCCGAA..........................................	28	0	1	9.00	9	7	2	0	0	0	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGA...........................................	25	0	1	7.00	7	5	2	0	0	0	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAA..........................................	26	0	1	7.00	7	6	1	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCC.............................................	25	0	1	6.00	6	1	5	0	0	0	0
......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCCGAAA.........................................	28	0	1	5.00	5	2	3	0	0	0	0
......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCCGA...........................................	26	0	1	4.00	4	3	1	0	0	0	0
........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGAAA.........................................	26	0	1	4.00	4	0	4	0	0	0	0
..........................................................................................TCCTGTTCACCTGCCTCCCGACGCG........................................................................................................................................	25	0	1	3.00	3	3	0	0	0	0	0
................................................................................................................................................................................................................................TTAAACTACGCGCCACCACCTCAATC.	26	1	1	3.00	3	0	3	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATC..............................................	24	0	1	3.00	3	1	2	0	0	0	0
................................................................................................................................................................................................TCCACCTAGAATCCGAAAAGAAATCTTC...............................	28	0	1	2.00	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................TCCCCATGAAACTACGCGCCACCACC.......	26	0	1	2.00	2	0	2	0	0	0	0
...................................................................................................................................................................................................................GAAATCTTCCCCATGAAACTACGCGC..............	26	0	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCC.............................................	22	0	1	2.00	2	0	2	0	0	0	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAAAA........................................	28	0	1	2.00	2	1	1	0	0	0	0
........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGA...........................................	24	0	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAACCC.............................................	25	1	3	1.67	5	0	5	0	0	0	0
..................................................................................................................................................................................................................AGAAATCTTCCCCATGAAACTACGCGC..............	27	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCC.............................................	24	0	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................CTTTAGCGTGATTCCACTGTCTTCC........................................................	25	1	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................CCATTGTCTTCCACCTAGAATCCGA...........................................	25	1	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................TCCCCATGAAACTACGCGCCACC..........	23	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................TTACACTGTCTTCCACCTAGAATCCGA...........................................	27	1	1	1.00	1	0	1	0	0	0	0
....................................................................................................CTGCCTCCCGACGCGCAGCC...................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................CTTCCCCATGAAACTACGCGCC.............	22	0	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTACCACCTAGAATCCGAA..........................................	28	1	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TGAAACTACGCGCCACCACCTCAATCT	27	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................CTGTCTTCCACCTAGAATCCGAAAAGA......................................	27	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTGCCACCTAGAATCC.............................................	25	1	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................CCACTGTCTTCAACCTAGAATCCGAAA.........................................	27	1	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................GAAACTACGCGCCACCACCTCAA...	23	0	1	1.00	1	1	0	0	0	0	0
.......................................................................................CAATTCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................	27	1	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................TCTTCCCCATGAAACTACGCGCCACC..........	26	0	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................GAAATCTTCCCCATGAAACTACG.................	23	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................ATCCTGTTCACCTGCCTCCCGACG..........................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................AAGAAATCTTCCCCATGAAACTACGCGCC.............	29	0	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................TTAACTGTCTTCCACCTAGAATCCGAAA.........................................	28	2	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................TAGTGTGATTCCACTGTCTTCCACC.....................................................	25	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................TCTTCCCCATGGAACTACGCGCCACC..........	26	1	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................TCGGCGGTGGTCGCAACCCAGCCTGGGC....................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................TTCTACTGTCTTCCACCTAGAATCCGAAA.........................................	29	1	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................TGCCACTGTCTTCCACCTAGAATCC.............................................	25	1	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................CTTCCACTGTCTTCCACCTAGAATC..............................................	25	1	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................TTACACTGTCTTCCACCTAGAATCCGAAA.........................................	29	1	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................TGCCACTGTCTTCCACCTAGAATCCGAAA.........................................	29	1	1	1.00	1	0	1	0	0	0	0
..........................TCTTTCATGTGTCCCCGCTGCGCCC........................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACTTAGAATCCGA...........................................	27	1	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................TCCCCATGAAACTACGCGCCACCAC........	25	0	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................ATTCCACTGTCTTCCACCTAGAATCCGA...........................................	28	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TGAAACTACGCGCCACCACCTCAAT..	25	0	1	1.00	1	0	1	0	0	0	0
...........................................................................................CCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0
.............................TTCATGTGTCCCCGCTGCGCCCGGA.....................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0
.........................................................................................ATCCTGTTCACCTGCCTCCCGACGCGCA......................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................TCCTGTTCACCTGCCTCCCGACGCGCAG.....................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................CTTCCCCATGAAACTACGCGCCACC..........	25	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTGCCACCTAGAATCCGA...........................................	27	1	1	1.00	1	1	0	0	0	0	0
.................................................................................TTCAGCCAATCCTGTTCACCTGCC..................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................TCCTGGTCACCTGCCTCCCGACGCG........................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0
.............ATAGCGCCCAGAATCTTTCATGTGTCC...................................................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAAAAG.......................................	29	0	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................TTAGTGTGATTCCACTGTCTTCCACC.....................................................	26	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................GCTTCCACTGTCTTCCACCTAGAATCC.............................................	27	1	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................CCCATGAAACTACGCGCCACC..........	21	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGAAAAG.......................................	28	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................TGCCCATGAAACTACGCGCCACCACC.......	26	1	1	1.00	1	0	1	0	0	0	0
..............TAGCGCCCAGAATCTTTCATGTGTC....................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGAA..........................................	25	0	1	1.00	1	1	0	0	0	0	0
.......................................................................................CAATCCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................ACAAATCTTCCCCATGAAACTACGCGC..............	27	1	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAAT...............................................	23	0	1	1.00	1	1	0	0	0	0	0
..........................TCTTTCATGTGTCCCCGCTGCGCCCGGA.....................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.............................TTCATGTGTCCCCGCTGCGCC.........................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................TGCCACTGTCTTCCACCTAGAATCCGAA..........................................	28	1	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCCG............................................	25	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................TCCTGTTCACCTGCCTCCCGACG..........................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCG............................................	24	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................TAGAATCCGAAAAGAAATCTTCCCC............................	25	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGA.................................................	21	0	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAA................................................	22	0	3	0.33	1	1	0	0	0	0	0
....................................................................................................................GGCCAAGTCCGCGGTGGT.....................................................................................................................	18	2	3	0.33	1	0	0	0	0	1	0
.....................................................................................................................................................................................TGCCACTGTCTTCCACCTAGAACCC.............................................	25	2	3	0.33	1	0	1	0	0	0	0
........................................................................................................................................................................................CACTGTCTTCCACCTATAATCCTAAA.........................................	26	2	4	0.25	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................TAACTACGCGCCAGCACC.......	18	2	5	0.20	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................TCTTCCCCATGATACTACGCGCCA............	24	1	7	0.14	1	0	0	0	0	0	1
....................CCAGACTCTTTCATATGCCC...................................................................................................................................................................................................................	20	3	10	0.10	1	1	0	0	0	0	0
..GATTCTGGCGAATATGGC.......................................................................................................................................................................................................................................	18	2	11	0.09	1	1	0	0	0	0	0
.....................................................................................................................GGAAAGTCGGCGGTGGACG...................................................................................................................	19	3	18	0.06	1	0	0	0	1	0	0

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAGATTCTGGCGAATAGCGCCCAGAATCTTTCATGTGTCCCCGCTGCGCCCGGACTCACGGAGTTGACCAGTTGCTGTTCTTTCAGCCAATCCTGTTCACCTGCCTCCCGACGCGCAGCCAAGTCGGCGGTGGTCGCAACCCAGCCTGGGCGTATCACACTCCTCAGAGTCTTTAGTGTGATTCCACTGTCTTCCACCTAGAATCCGAAAAGAAATCTTCCCCATGAAACTACGCGCCACCACCTCAATCT
******************************************************************************************.................(((((..........)))))(((((((((((.....(((((((.((.....)).)).))).))......)))))..)))))).........*****************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V041
embryo

V110
male body

V056
head

V049
head

.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCCGA...........................................

25.00

18.00

................................................................................................................................................................................................................................TGAAACTACGCGCCACCACCTCAATC.

17.00

14.00

..........................................................................................TCCTGTTCACCTGCCTCCCGACGCGC.......................................................................................................................................

13.00

..........................................................................................TCCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................

11.00

.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAAA.........................................

9.00

.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGA...........................................

7.00

.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAA..........................................

7.00

6.00

......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCCGAAA.........................................

5.00

......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCCGA...........................................

4.00

........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGAAA.........................................

4.00

..........................................................................................TCCTGTTCACCTGCCTCCCGACGCG........................................................................................................................................

3.00

................................................................................................................................................................................................................................TTAAACTACGCGCCACCACCTCAATC.

3.00

................................................................................................................................................................................................TCCACCTAGAATCCGAAAAGAAATCTTC...............................

2.00

..........................................................................................................................................................................................................................TCCCCATGAAACTACGCGCCACCACC.......

2.00

...................................................................................................................................................................................................................GAAATCTTCCCCATGAAACTACGCGC..............

2.00

........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCC.............................................

2.00

.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAAAA........................................

2.00

........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGA...........................................

2.00

1.67

..................................................................................................................................................................................................................AGAAATCTTCCCCATGAAACTACGCGC..............

1.00

......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCC.............................................

1.00

..........................................................................................................................................................................CTTTAGCGTGATTCCACTGTCTTCC........................................................

1.00

.......................................................................................................................................................................................CCATTGTCTTCCACCTAGAATCCGA...........................................

1.00

..........................................................................................................................................................................................................................TCCCCATGAAACTACGCGCCACC..........

1.00

.....................................................................................................................................................................................TTACACTGTCTTCCACCTAGAATCCGA...........................................

1.00

....................................................................................................CTGCCTCCCGACGCGCAGCC...................................................................................................................................

1.00

........................................................................................................................................................................................................................CTTCCCCATGAAACTACGCGCC.............

1.00

.....................................................................................................................................................................................TTCCACTGTCTACCACCTAGAATCCGAA..........................................

1.00

................................................................................................................................................................................................................................TGAAACTACGCGCCACCACCTCAATCT

1.00

..........................................................................................................................................................................................CTGTCTTCCACCTAGAATCCGAAAAGA......................................

1.00

.....................................................................................................................................................................................TTCCACTGTCTGCCACCTAGAATCC.............................................

1.00

.......................................................................................................................................................................................CCACTGTCTTCAACCTAGAATCCGAAA.........................................

1.00

.................................................................................................................................................................................................................................GAAACTACGCGCCACCACCTCAA...

1.00

.......................................................................................CAATTCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................

1.00

.......................................................................................................................................................................................................................TCTTCCCCATGAAACTACGCGCCACC..........

1.00

...................................................................................................................................................................................................................GAAATCTTCCCCATGAAACTACG.................

1.00

.........................................................................................ATCCTGTTCACCTGCCTCCCGACG..........................................................................................................................................

1.00

.................................................................................................................................................................................................................AAGAAATCTTCCCCATGAAACTACGCGCC.............

1.00

......................................................................................................................................................................................TTAACTGTCTTCCACCTAGAATCCGAAA.........................................

1.00

.............................................................................................................................................................................TAGTGTGATTCCACTGTCTTCCACC.....................................................

1.00

.......................................................................................................................................................................................................................TCTTCCCCATGGAACTACGCGCCACC..........

1.00

...........................................................................................................................TCGGCGGTGGTCGCAACCCAGCCTGGGC....................................................................................................

1.00

.....................................................................................................................................................................................TTCTACTGTCTTCCACCTAGAATCCGAAA.........................................

1.00

.....................................................................................................................................................................................TGCCACTGTCTTCCACCTAGAATCC.............................................

1.00

....................................................................................................................................................................................CTTCCACTGTCTTCCACCTAGAATC..............................................

1.00

.....................................................................................................................................................................................TTACACTGTCTTCCACCTAGAATCCGAAA.........................................

1.00

.....................................................................................................................................................................................TGCCACTGTCTTCCACCTAGAATCCGAAA.........................................

1.00

..........................TCTTTCATGTGTCCCCGCTGCGCCC........................................................................................................................................................................................................

1.00

.....................................................................................................................................................................................TTCCACTGTCTTCCACTTAGAATCCGA...........................................

1.00

..........................................................................................................................................................................................................................TCCCCATGAAACTACGCGCCACCAC........

1.00

....................................................................................................................................................................................ATTCCACTGTCTTCCACCTAGAATCCGA...........................................

1.00

................................................................................................................................................................................................................................TGAAACTACGCGCCACCACCTCAAT..

1.00

...........................................................................................CCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................

1.00

.............................TTCATGTGTCCCCGCTGCGCCCGGA.....................................................................................................................................................................................................

1.00

.........................................................................................ATCCTGTTCACCTGCCTCCCGACGCGCA......................................................................................................................................

1.00

..........................................................................................TCCTGTTCACCTGCCTCCCGACGCGCAG.....................................................................................................................................

1.00

........................................................................................................................................................................................................................CTTCCCCATGAAACTACGCGCCACC..........

1.00

.....................................................................................................................................................................................TTCCACTGTCTGCCACCTAGAATCCGA...........................................

1.00

.................................................................................TTCAGCCAATCCTGTTCACCTGCC..................................................................................................................................................

1.00

..........................................................................................TCCTGGTCACCTGCCTCCCGACGCG........................................................................................................................................

1.00

.............ATAGCGCCCAGAATCTTTCATGTGTCC...................................................................................................................................................................................................................

1.00

.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAAAAG.......................................

1.00

............................................................................................................................................................................TTAGTGTGATTCCACTGTCTTCCACC.....................................................

1.00

...................................................................................................................................................................................GCTTCCACTGTCTTCCACCTAGAATCC.............................................

1.00

............................................................................................................................................................................................................................CCCATGAAACTACGCGCCACC..........

1.00

........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGAAAAG.......................................

1.00

..........................................................................................................................................................................................................................TGCCCATGAAACTACGCGCCACCACC.......

1.00

..............TAGCGCCCAGAATCTTTCATGTGTC....................................................................................................................................................................................................................

1.00

........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGAA..........................................

1.00

.......................................................................................CAATCCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................

1.00

..................................................................................................................................................................................................................ACAAATCTTCCCCATGAAACTACGCGC..............

1.00

..........................TCTTTCATGTGTCCCCGCTGCGCCCGGA.....................................................................................................................................................................................................

1.00

.............................TTCATGTGTCCCCGCTGCGCC.........................................................................................................................................................................................................

1.00

.....................................................................................................................................................................................TGCCACTGTCTTCCACCTAGAATCCGAA..........................................

1.00

......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCCG............................................

1.00

..........................................................................................TCCTGTTCACCTGCCTCCCGACG..........................................................................................................................................

1.00

.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCG............................................

1.00

......................................................................................................................................................................................................TAGAATCCGAAAAGAAATCTTCCCC............................

1.00

0.33

....................................................................................................................GGCCAAGTCCGCGGTGGT.....................................................................................................................

0.33

.....................................................................................................................................................................................TGCCACTGTCTTCCACCTAGAACCC.............................................

0.33

........................................................................................................................................................................................CACTGTCTTCCACCTATAATCCTAAA.........................................

0.25

..................................................................................................................................................................................................................................TAACTACGCGCCAGCACC.......

0.20

.......................................................................................................................................................................................................................TCTTCCCCATGATACTACGCGCCA............

0.14

....................CCAGACTCTTTCATATGCCC...................................................................................................................................................................................................................

0.10

..GATTCTGGCGAATATGGC.......................................................................................................................................................................................................................................

0.09

.....................................................................................................................GGAAAGTCGGCGGTGGACG...................................................................................................................

0.06

ATCTAAGACCGCTTATCGCGGGTCTTAGAAAGTACACAGGGGCGACGCGGGCCTGAGTGCCTCAACTGGTCAACGACAAGAAAGTCGGTTAGGACAAGTGGACGGAGGGCTGCGCGTCGGTTCAGCCGCCACCAGCGTTGGGTCGGACCCGCATAGTGTGAGGAGTCTCAGAAATCACACTAAGGTGACAGAAGGTGGATCTTAGGCTTTTCTTTAGAAGGGGTACTTTGATGCGCGGTGGTGGAGTTAGA ***************************************************.................(((((..........)))))(((((((((((.....(((((((.((.....)).)).))).))......)))))..)))))).........****************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V041 embryo	V049 head	V056 head
.......................................................................................................................................................................TCAGAAATCACACTAAGGTGACAG............................................................	24	0	1	8.00	8	5	3	0	0	0	0
......................................................................................................................................................................CTCAGAAATCACACTAAGGTGACAG............................................................	25	0	1	4.00	4	4	0	0	0	0	0
.....................................................................................................................................................................TCTCAGAAATCACACTAAGGTGACAG............................................................	26	0	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................TCAGAAATCACACTAAGGTGACAGAA..........................................................	26	0	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................................................................................TCTTTAGAAGGGGTACTTTGATGC.................	24	0	1	3.00	3	3	0	0	0	0	0
................................................................................................................................................................................................................TTTCTTTAGAAGGGGTACTTTGATGC.................	26	0	1	3.00	3	3	0	0	0	0	0
.........................................................................CGACAAGAAAGTCGGTTAGGACAAGTG.......................................................................................................................................................	27	0	1	3.00	3	3	0	0	0	0	0
...........CTTATCGCGGGTCTTAGAAAGTACA.......................................................................................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0
............................................................................CAAGAAAGTCGGTTAGGACAAGTG.......................................................................................................................................................	24	0	1	2.00	2	1	1	0	0	0	0
..........................................................................................................................................................................GAAATCACACTAAGGTGACAGAA..........................................................	23	0	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................GGTCGGACCCGCATAGTGTGAGGAGT.....................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................GGTCGGACCCGCATAGTGTGAG.........................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................CAGCGTTGGGTCGGACCCG....................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................GGCTTTTCTTTAGAAGGGGTACT........................	23	0	1	1.00	1	1	0	0	0	0	0
.............................................................................................................CTGCGCGTCGGTTCAGCCGCCACC......................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................AGCGTTGGGTCGGACCCGCATAGTTT............................................................................................	26	1	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................AGTCTCAGAAATCACACTAAGGTGACAG............................................................	28	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................CGGTTAGGACAAGTGGACGGAGGGCT............................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
............................................................................AAAGAAAGTCGGTTAGGACATGGG.......................................................................................................................................................	24	3	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................CTTAGGCTTTTCTTTAGAAGGGGTACTT.......................	28	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................CACCAGCGTTGGGTCGGACCCGCATAGT..............................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.........................................................TGCCTCAACTGGTCAACGACAAG...........................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0
............................................ACGCGGGCCTGAGTGCCTCAA..........................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................TCAGAAATCACACTAAGGTGACAGC...........................................................	25	1	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................TCAGAAATCACACTAAGGTGACAGA...........................................................	25	0	1	1.00	1	0	1	0	0	0	0
..............................................................................AGAAAGTCGGTTAGGACAAGTG.......................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................TTGGGTCGGACCCGCATAGTGTGAGGAGT.....................................................................................	29	0	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................TTCTCAGAAATCACACTAAGGTGACAG............................................................	27	1	1	1.00	1	0	1	0	0	0	0
............ATATCGCGGGTCTTAGAAAGTACACAG....................................................................................................................................................................................................................	27	1	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................TTGGGTCGGACCCGCATAGTGTGAG.........................................................................................	25	0	1	1.00	1	0	1	0	0	0	0
...........................................................................ACAAGAAAGTCGGTTAGGACAA..........................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................TAGGCTTTTCTTTAGAAGGGGTACTT.......................	26	0	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................GGGGCGGACCCGCATAGTGTGAGGAGT.....................................................................................	27	1	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................CCAGAAATCACACTAAGGTGACAG............................................................	24	1	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................AGAAATCACACTAAGGTGACAGAA..........................................................	24	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................CTTTAGAAGGGGTACTTTGATGC.................	23	0	1	1.00	1	1	0	0	0	0	0
..........................................................................GACAAGAAAGTCGGTTAGGACAAGTG.......................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................CTCAGAAATCACACTAAGGTGACAGAA..........................................................	27	0	1	1.00	1	1	0	0	0	0	0
.............................................................................AAGAAAGTCGGTTAGGACAAGTG.......................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................GCGTTGGGTCGGACCCGCATAGTGT............................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................GTCGGTTTAGCCGCCACCAGCGTT................................................................................................................	24	1	1	1.00	1	0	0	0	1	0	0
...................................................................................GTCGGTTAGGACAAGTGGACGG..................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................TCTTAGGCTTTTCTTTAGAAGGGG............................	24	0	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................TCAGAAATCACACTAAGGTGACA.............................................................	23	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................CAGAAATCACACTAAGGTGACAGAAGTT.......................................................	28	1	1	1.00	1	0	1	0	0	0	0
...............................................................................................................CCGCGTCGGTTCGGCCGCCACT......................................................................................................................	22	3	3	0.33	1	0	0	0	0	1	0
.....................................................................................................................CGGTTAAGGCGGCACCAGCG..................................................................................................................	20	3	6	0.17	1	0	0	0	0	0	1
.....................................................................................................................................................................................AGGGTGACAGAAGGTAGGTC..................................................	20	3	13	0.15	2	0	0	2	0	0	0
........................................GGCGAGGCGGGCCCGAGCGC...............................................................................................................................................................................................	20	3	10	0.10	1	1	0	0	0	0	0
.....................................................................................................................CGGTTAAGCCGGCACCGGCG..................................................................................................................	20	3	14	0.07	1	1	0	0	0	0	0
..........................................CGAGGCGGGCCTGAGCGCG..............................................................................................................................................................................................	19	3	18	0.06	1	0	0	1	0	0	0
.........................................................................................................................................................................................TGACAGAAGGTGGTGCTAA...............................................	19	3	18	0.06	1	1	0	0	0	0	0
....................................................................................................................................................................................................GGATGTTAGGCTTTACTCT....................................	19	3	20	0.05	1	0	0	1	0	0	0

ATCTAAGACCGCTTATCGCGGGTCTTAGAAAGTACACAGGGGCGACGCGGGCCTGAGTGCCTCAACTGGTCAACGACAAGAAAGTCGGTTAGGACAAGTGGACGGAGGGCTGCGCGTCGGTTCAGCCGCCACCAGCGTTGGGTCGGACCCGCATAGTGTGAGGAGTCTCAGAAATCACACTAAGGTGACAGAAGGTGGATCTTAGGCTTTTCTTTAGAAGGGGTACTTTGATGCGCGGTGGTGGAGTTAGA
*****************************************************.................(((((..........)))))(((((((((((.....(((((((.((.....)).)).))).))......)))))..)))))).........******************************************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

V041
embryo

V049
head

V056
head

.......................................................................................................................................................................TCAGAAATCACACTAAGGTGACAG............................................................

8.00

......................................................................................................................................................................CTCAGAAATCACACTAAGGTGACAG............................................................

4.00

.....................................................................................................................................................................TCTCAGAAATCACACTAAGGTGACAG............................................................

3.00

.......................................................................................................................................................................TCAGAAATCACACTAAGGTGACAGAA..........................................................

3.00

..................................................................................................................................................................................................................TCTTTAGAAGGGGTACTTTGATGC.................

3.00

................................................................................................................................................................................................................TTTCTTTAGAAGGGGTACTTTGATGC.................

3.00

.........................................................................CGACAAGAAAGTCGGTTAGGACAAGTG.......................................................................................................................................................

3.00

...........CTTATCGCGGGTCTTAGAAAGTACA.......................................................................................................................................................................................................................

2.00

............................................................................CAAGAAAGTCGGTTAGGACAAGTG.......................................................................................................................................................

2.00

..........................................................................................................................................................................GAAATCACACTAAGGTGACAGAA..........................................................

2.00

............................................................................................................................................GGTCGGACCCGCATAGTGTGAGGAGT.....................................................................................

1.00

............................................................................................................................................GGTCGGACCCGCATAGTGTGAG.........................................................................................

1.00

....................................................................................................................................CAGCGTTGGGTCGGACCCG....................................................................................................

1.00

............................................................................................................................................................................................................GGCTTTTCTTTAGAAGGGGTACT........................

1.00

.............................................................................................................CTGCGCGTCGGTTCAGCCGCCACC......................................................................................................................

1.00

.....................................................................................................................................AGCGTTGGGTCGGACCCGCATAGTTT............................................................................................

1.00

...................................................................................................................................................................AGTCTCAGAAATCACACTAAGGTGACAG............................................................

1.00

.....................................................................................CGGTTAGGACAAGTGGACGGAGGGCT............................................................................................................................................

1.00

............................................................................AAAGAAAGTCGGTTAGGACATGGG.......................................................................................................................................................

1.00

........................................................................................................................................................................................................CTTAGGCTTTTCTTTAGAAGGGGTACTT.......................

1.00

.................................................................................................................................CACCAGCGTTGGGTCGGACCCGCATAGT..............................................................................................

1.00

.........................................................TGCCTCAACTGGTCAACGACAAG...........................................................................................................................................................................

1.00

............................................ACGCGGGCCTGAGTGCCTCAA..........................................................................................................................................................................................

1.00

.......................................................................................................................................................................TCAGAAATCACACTAAGGTGACAGC...........................................................

1.00

.......................................................................................................................................................................TCAGAAATCACACTAAGGTGACAGA...........................................................

1.00

..............................................................................AGAAAGTCGGTTAGGACAAGTG.......................................................................................................................................................

1.00

.........................................................................................................................................TTGGGTCGGACCCGCATAGTGTGAGGAGT.....................................................................................

1.00

....................................................................................................................................................................TTCTCAGAAATCACACTAAGGTGACAG............................................................

1.00

............ATATCGCGGGTCTTAGAAAGTACACAG....................................................................................................................................................................................................................

1.00

.........................................................................................................................................TTGGGTCGGACCCGCATAGTGTGAG.........................................................................................

1.00

...........................................................................ACAAGAAAGTCGGTTAGGACAA..........................................................................................................................................................

1.00

..........................................................................................................................................................................................................TAGGCTTTTCTTTAGAAGGGGTACTT.......................

1.00

...........................................................................................................................................GGGGCGGACCCGCATAGTGTGAGGAGT.....................................................................................

1.00

.......................................................................................................................................................................CCAGAAATCACACTAAGGTGACAG............................................................

1.00

.........................................................................................................................................................................AGAAATCACACTAAGGTGACAGAA..........................................................

1.00

...................................................................................................................................................................................................................CTTTAGAAGGGGTACTTTGATGC.................

1.00

..........................................................................GACAAGAAAGTCGGTTAGGACAAGTG.......................................................................................................................................................

1.00

......................................................................................................................................................................CTCAGAAATCACACTAAGGTGACAGAA..........................................................

1.00

.............................................................................AAGAAAGTCGGTTAGGACAAGTG.......................................................................................................................................................

1.00

......................................................................................................................................GCGTTGGGTCGGACCCGCATAGTGT............................................................................................

1.00

...................................................................................................................GTCGGTTTAGCCGCCACCAGCGTT................................................................................................................

1.00

...................................................................................GTCGGTTAGGACAAGTGGACGG..................................................................................................................................................

1.00

.......................................................................................................................................................................................................TCTTAGGCTTTTCTTTAGAAGGGG............................

1.00

.......................................................................................................................................................................TCAGAAATCACACTAAGGTGACA.............................................................

1.00

........................................................................................................................................................................CAGAAATCACACTAAGGTGACAGAAGTT.......................................................

1.00

...............................................................................................................CCGCGTCGGTTCGGCCGCCACT......................................................................................................................

0.33

.....................................................................................................................CGGTTAAGGCGGCACCAGCG..................................................................................................................

0.17

.....................................................................................................................................................................................AGGGTGACAGAAGGTAGGTC..................................................

0.15

........................................GGCGAGGCGGGCCCGAGCGC...............................................................................................................................................................................................

0.10

.....................................................................................................................CGGTTAAGCCGGCACCGGCG..................................................................................................................

0.07

..........................................CGAGGCGGGCCTGAGCGCG..............................................................................................................................................................................................

0.06

.........................................................................................................................................................................................TGACAGAAGGTGGTGCTAA...............................................

0.06

....................................................................................................................................................................................................GGATGTTAGGCTTTACTCT....................................

0.05

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:26481564-26481814 +	dmo_1258	TAGATTCTGGCGAATAGCGCCCAGAATCTTTCATGTGTCCCCGCTGCGCCCGGACTCACGGAGTTGACCAGTTGCTGTTCTTTCAGCCAATCCTGTTCACCTGCCTCCCGACGCGCAGCCAAGTCGGCGGTGGTCGCAACCCAGCCTGGGCGTATCACACTCCTCAGAGTCTTTAGTGTGATTCCACTGTCTTCCACCTAGAATCCGAAAAGAAATCTTCCCCATGAAACTACGCGCCACCACCTCAATCT

Species

Coordinate

Alignment

droMoj3

scaffold_6496:26481564-26481814 +

dmo_1258

TAGATTCTGGCGAATAGCGCCCAGAATCTTTCATGTGTCCCCGCTGCGCCCGGACTCACGGAGTTGACCAGTTGCTGTTCTTTCAGCCAATCCTGTTCACCTGCCTCCCGACGCGCAGCCAAGTCGGCGGTGGTCGCAACCCAGCCTGGGCGTATCACACTCCTCAGAGTCTTTAGTGTGATTCCACTGTCTTCCACCTAGAATCCGAAAAGAAATCTTCCCCATGAAACTACGCGCCACCACCTCAATCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TAGATTCTGGCGAATAGCGCCCAGAATCTTTCATGTGTCCCCGCTGCGCCCGGACTCACGGAGTTGACCAGTTGCTGTTCTTTCAGCCAATCCTGTTCACCTGCCTCCCGACGCGCAGCCAAGTCGGCGGTGGTCGCAACCCAGCCTGGGCGTATCACACTCCTCAGAGTCTTTAGTGTGATTCCACTGTCTTCCACCTAGAATCCGAAAAGAAATCTTCCCCATGAAACTACGCGCCACCACCTCAATCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCCGA...........................................	27	1	25.00	25	22	0	0	0	3	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCCG............................................	26	1	18.00	18	17	1	0	0	0	0
................................................................................................................................................................................................................................TGAAACTACGCGCCACCACCTCAATC.	26	1	17.00	17	0	3	0	0	14	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCCGAAA.........................................	29	1	14.00	14	8	0	0	0	6	0
..........................................................................................TCCTGTTCACCTGCCTCCCGACGCGC.......................................................................................................................................	26	1	13.00	13	8	1	0	0	4	0
..........................................................................................TCCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................	24	1	11.00	11	4	0	0	0	7	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAAA.........................................	27	1	9.00	9	0	0	0	0	9	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCCGAA..........................................	28	1	9.00	9	7	0	0	0	2	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGA...........................................	25	1	7.00	7	5	0	0	0	2	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAA..........................................	26	1	7.00	7	6	0	0	0	1	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATCC.............................................	25	1	6.00	6	1	0	0	0	5	0
......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCCGAAA.........................................	28	1	5.00	5	2	0	0	0	3	0
......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCCGA...........................................	26	1	4.00	4	3	0	0	0	1	0
........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGAAA.........................................	26	1	4.00	4	0	0	0	0	4	0
..........................................................................................TCCTGTTCACCTGCCTCCCGACGCG........................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAATC..............................................	24	1	3.00	3	1	0	0	0	2	0
................................................................................................................................................................................................TCCACCTAGAATCCGAAAAGAAATCTTC...............................	28	1	2.00	2	0	0	0	0	2	0
..........................................................................................................................................................................................................................TCCCCATGAAACTACGCGCCACCACC.......	26	1	2.00	2	0	0	0	0	2	0
...................................................................................................................................................................................................................GAAATCTTCCCCATGAAACTACGCGC..............	26	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCC.............................................	22	1	2.00	2	0	0	0	0	2	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAAAA........................................	28	1	2.00	2	1	0	0	0	1	0
........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGA...........................................	24	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................AGAAATCTTCCCCATGAAACTACGCGC..............	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCC.............................................	24	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................TCCCCATGAAACTACGCGCCACC..........	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................CTGCCTCCCGACGCGCAGCC...................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................CTTCCCCATGAAACTACGCGCC.............	22	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................TGAAACTACGCGCCACCACCTCAATCT	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................CTGTCTTCCACCTAGAATCCGAAAAGA......................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................GAAACTACGCGCCACCACCTCAA...	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................TCTTCCCCATGAAACTACGCGCCACC..........	26	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................GAAATCTTCCCCATGAAACTACG.................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................ATCCTGTTCACCTGCCTCCCGACG..........................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................AAGAAATCTTCCCCATGAAACTACGCGCC.............	29	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................TAGTGTGATTCCACTGTCTTCCACC.....................................................	25	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................TCGGCGGTGGTCGCAACCCAGCCTGGGC....................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................TCTTTCATGTGTCCCCGCTGCGCCC........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................TCCCCATGAAACTACGCGCCACCAC........	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................ATTCCACTGTCTTCCACCTAGAATCCGA...........................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TGAAACTACGCGCCACCACCTCAAT..	25	1	1.00	1	0	0	0	0	1	0
...........................................................................................CCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................TTCATGTGTCCCCGCTGCGCCCGGA.....................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.........................................................................................ATCCTGTTCACCTGCCTCCCGACGCGCA......................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................TCCTGTTCACCTGCCTCCCGACGCGCAG.....................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................CTTCCCCATGAAACTACGCGCCACC..........	25	1	1.00	1	1	0	0	0	0	0
.................................................................................TTCAGCCAATCCTGTTCACCTGCC..................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............ATAGCGCCCAGAATCTTTCATGTGTCC...................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCGAAAAG.......................................	29	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................TTAGTGTGATTCCACTGTCTTCCACC.....................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................CCCATGAAACTACGCGCCACC..........	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGAAAAG.......................................	28	1	1.00	1	1	0	0	0	0	0
..............TAGCGCCCAGAATCTTTCATGTGTC....................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................CACTGTCTTCCACCTAGAATCCGAA..........................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................CAATCCTGTTCACCTGCCTCCCGACGC.........................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAAT...............................................	23	1	1.00	1	1	0	0	0	0	0
..........................TCTTTCATGTGTCCCCGCTGCGCCCGGA.....................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................TTCATGTGTCCCCGCTGCGCC.........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................TCCACTGTCTTCCACCTAGAATCCG............................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................TCCTGTTCACCTGCCTCCCGACG..........................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................CCACTGTCTTCCACCTAGAATCCG............................................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................TAGAATCCGAAAAGAAATCTTCCCC............................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGA.................................................	21	3	0.33	1	0	0	0	0	1	0
.....................................................................................................................................................................................TTCCACTGTCTTCCACCTAGAA................................................	22	3	0.33	1	1	0	0	0	0	0

dmo_1258

scaffold_6496:26481614-26481764 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.8	-26.5	-26.4