ID:

dmo_1256

 Coordinate:

scaffold_6496:26373618-26373768 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.7 -3.2 -3.1

Flybase annnotation

CDS [Dmoj\GI21339-cds]; exon [dmoj_GLEANR_6123:13]; intron [Dmoj\GI21339-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
DNAREP1_DMRCHelitron+
mature
  1. dmo_1256  scaffold_6496:26373716-26373736 +
  2. scaffold_6500:31929156-31929176 +
star
  1. scaffold_6482:1406167-1406187 +
  2. scaffold_6482:2633823-2633843 +
  3. scaffold_6496:17060059-17060079 +
  4. scaffold_6496:24285223-24285243 +
  5. scaffold_6496:25738353-25738373 +
  6. dmo_1256  scaffold_6496:26373682-26373702 +
  7. scaffold_6498:1399849-1399869 +
  8. scaffold_6680:23227042-23227062 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAGCGCGCTCGCCAGGACGACACAGACATTGATATTGAGTCAAACAACGGTAAGTGCGTGCACCCATCACAGATTTTTCTTTTTATACCCTGAACCCATTGAAAATAGGAAATCGGGGTATAATGGTTTTGTGAAAAATATGAAACAGGCAGAAGGAGTCATCACAGACCCCATAAAGAATATATGTATATTCTTGATTAGGGCGACGAACTGAGTTGATATAACCCTGTCCGTCTGTCCATATGAGTGC
******************************************************************************************************************..............(((((((.............(((.......))).)))))))********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V041
embryo
..................................ATTGAGTCAAACAACGGTA...................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0
...................GACACAGACATTGATATTG..................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
........CTCGCCAGGACGACACAGACA.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0
....................................................................................................................................................GGCAGAAGGAGTCATCACAGA.................................................................................. 21 0 2 0.50 1 1 0 0 0
..................................................................ATCACAGATTTTCCTTTAT...................................................................................................................................................................... 19 2 13 0.15 2 0 0 2 0
..................................................................................................................CGGGGTATAATGGTTTTGTGA.................................................................................................................... 21 0 8 0.13 1 0 0 0 1
..........................................AAACTACGGTAGGGGCGT............................................................................................................................................................................................... 18 3 14 0.07 1 0 1 0 0
..............................................................................TCTTTTTATACCCTGAACCCATT...................................................................................................................................................... 23 0 20 0.05 1 0 0 1 0
...............................................................................................................AATCGGGGTGTAATGGTTTTG....................................................................................................................... 21 1 20 0.05 1 1 0 0 0
..........................................AAACTACGGTAAGGGCGC............................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0
...............................................................................CTTTTTATACCCTGAACCCAT....................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0
.............................................................................................................................................................................................TATTCTTGATTAGGGCGACGA......................................... 21 0 20 0.05 1 1 0 0 0
.............................................................................................................................................................................................TATTCTTGATTAGGGCGACG.......................................... 20 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

TTTCGCGCGAGCGGTCCTGCTGTGTCTGTAACTATAACTCAGTTTGTTGCCATTCACGCACGTGGGTAGTGTCTAAAAAGAAAAATATGGGACTTGGGTAACTTTTATCCTTTAGCCCCATATTACCAAAACACTTTTTATACTTTGTCCGTCTTCCTCAGTAGTGTCTGGGGTATTTCTTATATACATATAAGAACTAATCCCGCTGCTTGACTCAACTATATTGGGACAGGCAGACAGGTATACTCACG
**********************************************************************************..............(((((((.............(((.......))).)))))))****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V049
head
 M046
female body
 V110
male body		 M060
embryo
.........................................................................................................................................................................................................................ATTATAGTGGGACTGGCAG............... 19 3 12 0.25 3 0 2 1 0
..TCGCGCGAGCGGTGCGGCGGT.................................................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0
........................................................................................................................................................................TGGGGTTTTTCTTATCTAC................................................................ 19 2 8 0.13 1 1 0 0 0
..................................................................................................................CCCCCATATTACCAAAACACT.................................................................................................................... 21 1 13 0.08 1 0 1 0 0
......................................................................................................................CATATTACCAAAACACTTTGTATT............................................................................................................. 24 2 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:26373568-26373818 + dmo_1256 AAAGCGCGCTC-GCC---AGGACGA---CACAGA------CA----T---------------------T-G-----ATATT--------------------------------------------------------------GAG-----------------------------------------------TCAAACAACG--------------------------------------------------------------------------------G------TAAGTGCGTGCACCCATCAC---AGA---------------------------TT--TTT----CTTTTTATACCCTGAACCCATTGAAAATAGGA-AAT---CGGGGTATAATGGTTTTG-TGAAA-------AATATGAAACAGGCAGAAGGAGTCA----TCACAGACCCCATAAAGAATAT----ATGTATATTCTTGATTAGGGCGACGAACTGAGTTGATATAACCCTGTCCGTCTGTCCATATGA------------------------GTGC
droVir3 scaffold_12723:1181822-1182095 - AAAATTCCATC-ATA---ATAACAAA---ATACA------TA----TTTATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTA--AATTAACAACTTTAGAAGCTGATAG------C---TAA------TA-----TCAACTTT------TG--AAT----ATTATTATGCCCTGAACCCATTGAAAATGGGTAAAA---AAAAGTATATTGTATTTGTGCAAAATGTGAATGTATGTAACAGGCAGAAGGAAGCA----TCTCCGACCCCATAGAGTATAT--------ATATTCTTGATC-------------GAGTCGATCTAGCCATGTCCGTCTGTCTGTCTGTCTGTCCGTCCGTCCGTATGTATAAGCGC
droGri2 scaffold_15245:13717659-13717893 + ACAACACGGGC-ATT---GAGCTAA---CGCG-----------------------------------------------------------------GGCCGC----C-----GAGG------------------------------------------------------------------------------------------------------------------TAAGTTCCA-----------------------------------------------------------------G-----------------------TT-GCACTTA--C--TGCCTT----CTATTTATACCCTGAACCCATTAGAAATGAGC-AGA---AAGGGTATAATGGTTTTGTGCAAA-------TGTATGTAACAGGCGAAATGAAGCA----TCACCGAGCCCATAAAGTATAT--------ATATTCTTGATCAGGGTCAACAGCCAAGTCGATATAGCCAAGTCCGTCCGTCCGTCTGAATGA--------------------ACAC
droWil2 scf2_1100000002843:7439-7670 - AATTCATACTG-GCC---T---------------------------------------------------A-------------------------------------------------ATGGTGTTACAAACA---ATGTAAAT-----------------------------------------------TTAACCGACT--------------------------------------------------------------------------------C------CTTGTCCATGAACACATGA----AAA---------------------------TA--TCC----ATTTTTATACCCT-----TGCA------------AA---AAGGGTATATTAATTTTGGTCAAA-------AGTGTGCAACGCATAGAAGGAAGCA----TCTCCGACCATATAAAGTATAT--------ATATTCTTGATCAGCACGACGAGACGAGTTCAAATCGCCATGTCCGTCCGTCCGTCCGTCCGT----------------------CC
dp5 XR_group8:3534001-3534263 - GAAGAGGGTTC-CAG---AGGGGA---------CC--A------------------------------------------------------------------------------------G------------------------------------------GGAAGTGGATGT-----------------------------------------------------------GACAAGTGCGACAATTGTAA-----------G-AAAACCCAGAAGCAAT------GA--------------------------------------------------GC--CCT----ATTTTTATACCCGATACTCAAA----ATGAGT--AT---AGAGGTATATTAGATTTGTGGTGAACTTGGATGTGTGTAACGTCGAGAAGGAAGCG----TTTCCGACCCCATAAAATATATACATATGTATATTCATGATCAGCATCAATAGCCGAGTCGATTGAGCAATGCCTGTCTGTCCGTCCCTATGA--------------------GAGC
droPer2 scaffold_1040:5605-5865 + GCGGCGTCTGC-CTG---AGGAGAGCCATACTGA------CT----T-----------------------A-----GTATC--------------------------------------------------------------GGG----------------------------------TATAACTGTAGAGTT-----GCG--------------------------------------------------------------------------------G------TGTCCGCAGCAACTCA---CAAC--------G-------------T-------TC--CCC----CTCGTCATACCCGATACTCAAA----ATGAGT--AT---TGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGGCCAGAAGGAATCA----TTTCCGACCCCATAAAGTATAT--------ATATTCTTGATCAGCATCAACAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCTGTTTGT----------------------CC
droAna3 scaffold_13335:3120641-3120859 - ACACTGCACTC-GTC---TCGACGG---CA---C------CACTGG-------------------------------------------------------------------------------------------------------------------CCCCATC---------------------------------C-----------------------GGGAAAAGCGTTATAACT---------------------------------------------------------------TCAA---CAA---------------------------TT--TTC----ATAATTATACCAT-----TGCAG-----------------AGGGTATTATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACA----TCTCCGACCCTATAAAGTATAT--------ATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCTGT------------------------
droBip1 scf7180000393189:3089-3307 + AAAGCTGCATC-AGCAGCAGGTT-----CAAAGA------AA----C----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATACTC--AAACAAT------AA-------------TTT--------------------TT-GGTTTTG--T--AATTGT----CTCATTATACCCT-----TGCAG-----------------AGGGTATTATAATTTTGTCCAAA-------AGTGTGCAACGCAGTGAAGGAGACA----TCTCCGACCCTATAAAGTATAT--------ATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGT--------------------------CC
droKik1 scf7180000302517:522511-522745 - GT-------TC-GCC---AGGGCA---------AC--ACGCAGTGG------------------------------------------------GCGTGCGGC----A-----AAGG---------------------GGGCGTGCCCAAAACACACACACATA-----------------------------------------------------------------------TTTTA--------------------------------------------------------------------------------------------GTTTTTTTGTAATCTTTATTTAATTTTTATACCCT-----TGC-------------------AGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACG----TTTCCGACCCTATAAAGTATAT--------ATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTG-----------------------------
droFic1 scf7180000451508:138681-138899 - AACTCTAAA--------------------------------------------------------------------------------------------------------ACTGTCAATGACAT--------TTA-----------------AGACAAATAA----------------------------------------------------------------------------------------------------------------------T------TAAGTACGTAAACCAATTT----------------------------TATGAATG--GTT----ATTTTTATACCCT-----TGCAGA------GC--AA---AAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACA----CCTTAGACCCCATAAAGTATAT--------ATATTCTTGATCAGCATCACGAGCAGAGTCGGAATACGTCTGTACGTCTGTCCGTCTG-----------------------------
droEle1 scf7180000491186:2547577-2547793 + ATGT-GTGGTC-ACA---ATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGGCGCCATAGACAAAAGTACATTAAAGAGAAGTGCGTTTTA-------------------------------------------------------------------------------------------------------GT--TTT----ATTTTTATACCCT-----TGCAG-----------------AGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAAACG----TTTCCGACCCTATAAAGTATAT--------ATATTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGT--------------------------CC
droRho1 scf7180000774492:769-1003 + GAATCGCGTTC-GGCTTTAGGTCAA---CAAATG------TT----T----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAATGTTC---------------------ATAAAA----------AAATCTCCAATTTAATTC-GCTTTTA--A--CATGTT----CTTTTTATACCCT-----TGCAG-----------------AGGGTATTATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACA----TCTCCGACCCTATAAAGTATAT--------ATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTCCGTCTGTCTGT----------------------CC
droBia1 scf7180000302377:41847-42067 + AATAACTTA-------------------------------------TTTGTAAATAATAAAACCAT--G-TATGTATGAGTAAAAAAAAGACTCGTGTGCCGC----C-----AAA-----------------------------------------------------------------------------------------------------------------AAAGTGTT--------------------------------------------------------------------------------------------------------------TGA----GTTTTTATACCCT-----TGCAG-----------------AGGGTATAATGATTTCAGTGAAC-------AGTTTGCAACACAGTGAAGAAAACG----TTTCCGACCCCATAAAGTATAT--------ATATTCTTGATCAGCGTCGCTGGACGAGTCGATCTAGCCATGTCCGTCTGTCTGT--------------------------------
droTak1 scf7180000412299:31861-32078 + CG------TTC-ATA---GGGACGGACATACAGA------CA----T---------------------G-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------------------A------TATCGACTCGGCTAG------TG--ACC----CTTTTTATACCCGTTACTCGTAGA------GT--AA---AAGGGTATATTGGATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCG----TTTCCGACCCCATAAAGTATAT--------ATATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCCATGTCCATCTGTCCGTCTGTATGA--------------------ACGC
droEug1 scf7180000409057:40377-40600 - CTGGGACCTCT-------------------------------------------------------------------------------------------------------CTTACAATGACCC--------TTT-------G---------------CTAATTAAATACAAGGGGACACAACT----------------------------------------------------------------------------------------------------------------------AT-AC---AGA---------------------------TA--TCA----ATTCTTATACCCGATACTCGTAGA------GT--AA---AAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGATAGAAGGAAGCG----TTTCCGACCCTATAAAGTATAT--------ATATATTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGA----------------------------
dm3 chrX:22325933-22326149 - ACGCATACAGT-GACAG-----------------C--A------------------------------------------------------------------------------------G------------------------------------------TCAACTGTATGTGTGCACACGT-------------------------------------------------------------------------------------------------------------------ATGCTCATAAA--------T---------------------TG--TAA----ATTTTTATTCCCGTTACTCGTAGA------GT--AA---AATGGTATACTAGATTCCTTGAAA-------AGTATGTAACTGCCAGAAGGAAGCG----TTTCCGACTATATAAAGTATAT--------ATATTCTTGATCAGGATCAATAGGCGAGTCGATCTAGACATGCCCGTCTGTCCGTATGA---------------------------C
droSim2 3l:20457484-20457725 - ACAAAGTGATC-TTG---GGAACGAA---AAA-----------------------------ATAACGTT-G-----AGATTCAGCGAGATTCTAGTTTGCAAGTCGGTGCCTTTCCCACAAAGATA-------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------TT--GAT----GTTTTTATACGCGGTACTCGTAGA------CT--AA---AAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGACAGAAGGAAGCG----TTGCCGACTATATAAAGTATAT--------ATATTCTTGATCAGAATCAA-----AAGTCGATCTATCCATGTCCCTCTGTCCGTAT------------------------------
droSec2 scaffold_120:26061-26313 - AAGC-GTGTTTCAGA---AGATTGA---CACGAC------CA----C----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-AAAGTCCATAAGCGGT------CAA------------------C--------ACTCTCACTC-GTTTTTAAAAAATGTTTT----TTTATTATACCCGTTACTTGTAGA------GT--AA---GGGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAATCGAAGGAATCTGACTATATAAAGCGTAT--------ATATTCTTGATCAGGATCAATAGGCGAGTCGATCTAACCATGTCCGTCTGTCCTTCTGTCCGA------------AT------GAAC
droYak3 v2_chrUn_1982:267-521 + AATGAGCACTC-GCT---AGGGAA---------GTCTACGCTGTTGCTTGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAGCTGATGTTCACA--------T------TAACGGCATGCACCGGT----------------------------TCAC----TTGTTCT----TTTATTATACCCGTTACTCGTAGA------GT--AATACTAGATTATACTAGATTCGTTGAAA-------AGTATGTAACAAGCAGAAGGAAGCG----TTTCCGACCATATAAAGTATAT--------ATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTTCGTCTGTCCATCCGTATGA----------------------AC
droEre2 scaffold_4770:1472699-1472925 - der_511 GGTGCCGCA--------------------------------------------------------------------------------------------------------GAGGTAGAAGCC------------------AAT-----------------------------------------------TTATACGGA---------------------------A-----------------------------------------------------A------TGTGTTCATGGAATGATCATAAC--------G-------------C-------TT--AAT----ATTTTTATACCCGCTACTTTTAGA------GG--AA---AAGGGTATACTAGATTCGTTGAAA-------AGTATGTAATGGACAGAAGGAAGCG----TTTCCGACCATATAAAGTATAT--------ATATTCTTGATCAGGATCGATGGCCGAGTCGAACTGGCCATGTCCGTCTGTCCATTTGA------------------------ACCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AAAGCGCGCTC-GCC---AGGACGA---CACAGA------CA----T---------------------T-G-----ATATT--------------------------------------------------------------GAG-----------------------------------------------TCAAACAACG--------------------------------------------------------------------------------G------TAAGTGCGTGCACCCATCAC---AGA---------------------------TT--TTT----CTTTTTATACCCTGAACCCATTGAAAATAGGA-AAT---CGGGGTATAATGGTTTTG-TGAAA-------AATATGAAACAGGCAGAAGGAGTCA----TCACAGACCCCATAAAGAATAT----ATGTATATTCTTGATTAGGGCGACGAACTGAGTTGATATAACCCTGTCCGTCTGTCCATATGA------------------------GTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................ATT--------------------------------------------------------------GAG-----------------------------------------------TCAAACAACG--------------------------------------------------------------------------------G------TA......................................................................................................................................................................................................................................................................................1912.002200000
.......................GA---CACAGA------CA----T---------------------T-G-----ATATT--------------------------------------------------------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
........CTC-GCC---AGGACGA---CACAGA------CA----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAGTCA----TCACAGA..............................................................................................................2120.501100000
.........................................................................................................................................................................................................................................................................................................................................................................................................CGGGGTATAATGGTTTTG-TGA...........................................................................................................................................................2180.131010000
.............................................................................................................................................................................................................................................................................................................................................................T----CTTTTTATACCCTGAACCCATT..................................................................................................................................................................................................23200.051000010
..................................................................................................................................................................................................................................................................................................................................................................CTTTTTATACCCTGAACCCAT...................................................................................................................................................................................................21200.051000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATTAGGGCGACGA.................................................................21200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATTAGGGCGACG..................................................................20200.051100000
droVir3
AAAATTCCATC-ATA---ATAACAAA---ATACA------TA----TTTATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTA--AATTAACAACTTTAGAAGCTGATAG------C---TAA------TA-----TCAACTTT------TG--AAT----ATTATTATGCCCTGAACCCATTGAAAATGGGTAAAA---AAAAGTATATTGTATTTGTGCAAAATGTGAATGTATGTAACAGGCAGAAGGAAGCA----TCTCCGACCCCATAGAGTATAT--------ATATTCTTGATC-------------GAGTCGATCTAGCCATGTCCGTCTGTCTGTCTGTCTGTCCGTCCGTCCGTATGTATAAGCGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCA----TCTC.................................................................................................................22200.051000000001000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAGCA----TCTCCGACCCCATAGAG....................................................................................................26200.051000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCA----TCTCCGACC............................................................................................................23200.051000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTCCGTCCGTATG.........24200.051000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCGTCTGTC...................................22200.051010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCCGTCCGTATGTAT......21200.051000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTGTCCGTCCGTCCG.............21200.051000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCTGTCTGTCCGTCC..................23200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA----TCTCCGACCCCATAGAGTATA................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCTGTCTGTCTG.........................20200.051000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCA----TCT..................................................................................................................24200.051000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATGTAACAGGCAGAAGGAAGC..........................................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA----TCTCCGACCCCATAGAGTATAT--------A......................................................................................27200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATTTGTGCAAAATG......................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCA----TC...................................................................................................................18200.051000000000000000000000000000001000000000000000000000000000000000
droGri2
ACAACACGGGC-ATT---GAGCTAA---CGCG-----------------------------------------------------------------GGCCGC----C-----GAGG------------------------------------------------------------------------------------------------------------------TAAGTTCCA-----------------------------------------------------------------G-----------------------TT-GCACTTA--C--TGCCTT----CTATTTATACCCTGAACCCATTAGAAATGAGC-AGA---AAGGGTATAATGGTTTTGTGCAAA-------TGTATGTAACAGGCGAAATGAAGCA----TCACCGAGCCCATAAAGTATAT--------ATATTCTTGATCAGGGTCAACAGCCAAGTCGATATAGCCAAGTCCGTCCGTCCGTCTGAATGA--------------------ACACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AATTCATACTG-GCC---T---------------------------------------------------A-------------------------------------------------ATGGTGTTACAAACA---ATGTAAAT-----------------------------------------------TTAACCGACT--------------------------------------------------------------------------------C------CTTGTCCATGAACACATGA----AAA---------------------------TA--TCC----ATTTTTATACCCT-----TGCA------------AA---AAGGGTATATTAATTTTGGTCAAA-------AGTGTGCAACGCATAGAAGGAAGCA----TCTCCGACCATATAAAGTATAT--------ATATTCTTGATCAGCACGACGAGACGAGTTCAAATCGCCATGTCCGTCCGTCCGTCCGTCCGT----------------------CCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................TAACCGACT--------------------------------------------------------------------------------C------CTTGTCCATGAACACA........................................................................................................................................................................................................................................................................26190.9518018000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCACGACGAGACGAGT..........................................................21200.20404000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAACGCATAGAAGGAAG...........................................................................................................................21200.15300300
.............................................................................................................................................TAAAT-----------------------------------------------TTAACCGACT--------------------------------------------------------------------------------C------CTTGTCCAT...............................................................................................................................................................................................................................................................................25200.10201010
......................................................................................................................................................................................................................................................................................................TCCATGAACACATGA----AAA---------------------------TA--TCC----AT......................................................................................................................................................................................................................25160.06101000
...TCATACTG-GCC---T---------------------------------------------------A-------------------------------------------------ATGGTGTTACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.06101000
.................................................................................................................................................................................................TTAACCGACT--------------------------------------------------------------------------------C------CTTGTCCATGAACACA........................................................................................................................................................................................................................................................................27160.06101000
.................................................................................................................................................................................................TTAACCGACT--------------------------------------------------------------------------------C------CTTGTCCATGAACAC.........................................................................................................................................................................................................................................................................26160.06101000
......................................................................................................................................................................................................................................................................................................TCCATGAACACATGA----AAA---------------------------TA--TCC----ATT.....................................................................................................................................................................................................................26160.06101000
....................................................................................................................................................................................................................................................................................................TGTCCATGAACACATGA----AAA---------------------------TA--TCC----AT......................................................................................................................................................................................................................27160.06101000
......................................................................................................................................................................................................................................................................................................TCCATGAACACATGA----AAA---------------------------TA--TCC----ATTTT...................................................................................................................................................................................................................28160.06101000
...TCATACTG-GCC---T---------------------------------------------------A-------------------------------------------------ATGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.06100010
.................................................................................................................................................................................................TTAACCGACT--------------------------------------------------------------------------------C------CTTGTCCATGAACA..........................................................................................................................................................................................................................................................................25180.06101000
.................................................................................................................................................................................................TTAACCGACT--------------------------------------------------------------------------------C------CTTGTCCATGAAC...........................................................................................................................................................................................................................................................................24180.06101000
..................................................................................................................................................................................................TAACCGACT--------------------------------------------------------------------------------C------CTTGTCCATGAACACAT.......................................................................................................................................................................................................................................................................27180.06101000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATATTAATTTTGGTCA...........................................................................................................................................................21200.05101000
...........................................................................................................................................TGTAAAT-----------------------------------------------TTAACCGACT--------------------------------------------------------------------------------C------CTTGTCCA................................................................................................................................................................................................................................................................................26200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACGACGAGACGAGTTCAAATCG..................................................25200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCGCCATGTCCGTCCGTCC..................................23200.05100010
..................................................................................................................................................................................................TAACCGACT--------------------------------------------------------------------------------C------CTTGTCCATGAACA..........................................................................................................................................................................................................................................................................24200.05101000
...........................................................................................................................................TGTAAAT-----------------------------------------------TTAACCGACT--------------------------------------------------------------------------------C------CTTGTCC.................................................................................................................................................................................................................................................................................25200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA----TCTCCGACCATATAAA.....................................................................................................20200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATCGCCATGTCCGTCCG.....................................22200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTCAAA-------AGTGTGCAACGCATAGA.................................................................................................................................27200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACGACGAGACGAGT..........................................................18200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCATGTCCGTCCGTCC..................................20200.05100100
..............................................................................................................................................AAAT-----------------------------------------------TTAACCGACT--------------------------------------------------------------------------------C------CTTGTCCA................................................................................................................................................................................................................................................................................23200.05101000
dp5
GAAGAGGGTTC-CAG---AGGGGA---------CC--A------------------------------------------------------------------------------------G------------------------------------------GGAAGTGGATGT-----------------------------------------------------------GACAAGTGCGACAATTGTAA-----------G-AAAACCCAGAAGCAAT------GA--------------------------------------------------GC--CCT----ATTTTTATACCCGATACTCAAA----ATGAGT--AT---AGAGGTATATTAGATTTGTGGTGAACTTGGATGTGTGTAACGTCGAGAAGGAAGCG----TTTCCGACCCCATAAAATATATACATATGTATATTCATGATCAGCATCAATAGCCGAGTCGATTGAGCAATGCCTGTCTGTCCGTCCCTATGA--------------------GAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAACTTGGATGTG..............................................................................................................................................2112.0020000000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAACTTGGATGTGTGT...........................................................................................................................................2411.0010000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAACTTGGATGTGTG............................................................................................................................................2311.0010000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGATCAGCATCAATAG................................................................2150.2010000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGCATCAATAGCCGAGTCGAT......................................................2750.2010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TATATTAGATTTGTGGTGAAC.......................................................................................................................................................2150.2010000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAGCA................................................21180.1730300000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCG----TTTCCGACCCCATAAAA....................................................................................................2760.1710100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGCATCAATAGCCGAGTCG........................................................2560.1710100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGCATCAATAGCCGAGTC.........................................................2460.1710100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGCATCAATAGCCGAGT..........................................................2360.1710100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGATT.....................................................23200.1530300000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATAGCCGAGTCGATTGAGCA................................................26160.0610100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCGAGT..........................................................21200.0510000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGA...................................................19200.0510000001000
droPer2
GCGGCGTCTGC-CTG---AGGAGAGCCATACTGA------CT----T-----------------------A-----GTATC--------------------------------------------------------------GGG----------------------------------TATAACTGTAGAGTT-----GCG--------------------------------------------------------------------------------G------TGTCCGCAGCAACTCA---CAAC--------G-------------T-------TC--CCC----CTCGTCATACCCGATACTCAAA----ATGAGT--AT---TGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGGCCAGAAGGAATCA----TTTCCGACCCCATAAAGTATAT--------ATATTCTTGATCAGCATCAACAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCTGTTTGT----------------------CCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................TATAACTGTAGAGTT-----GCG--------------------------------------------------------------------------------G------TG......................................................................................................................................................................................................................................................................................21200.60120120000
................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGGATGTGTGTAACGG......................................................................................................................................2040.251100000
...............................TGA------CT----T-----------------------A-----GTATC--------------------------------------------------------------GGG----------------------------------TATAACTGTA............................................................................................................................................................................................................................................................................................................................................................................................25200.153030000
......................................................................A-----GTATC--------------------------------------------------------------GGG----------------------------------TATAACTGTAGAGTT-----GC................................................................................................................................................................................................................................................................................................................................................................................26200.153300000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCCTGTC...........................................19200.102000002
.....................................................................................................................................................................................................................................................................................................................................................................................AAA----ATGAGT--AT---TGGGGTATAT.......................................................................................................................................................................21200.102000002
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAACGGCCAGAAGGAATA..........................................................................................................................21130.081010000
.......................................................................................................................................................................................................................................................................................................................................................................................A----ATGAGT--AT---TGGGGTATATT......................................................................................................................................................................20200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATTGAGCCCTGTCTG.........................................25200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCCCTGTCTGTCTGTCC..................................21200.051000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCCTGTCTGTCTGTCCGTCTG.............................24200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCCGAGTCGATTG....................................................20200.051000001
..............................................................................ATC--------------------------------------------------------------GGG----------------------------------TATAACTGTAGAGTT-----G.................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGGATGTGTG............................................................................................................................................28200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAACAGCCG.............................................................21200.051000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAACAGCCGAGTC.........................................................24200.051001000
...............................................................................................................................................................................................................................................................................................................................................................................ATACTCAAA----ATGAGT--AT---TGGGGTATA........................................................................................................................................................................26200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTCTGTCTGTCCGTCTGT............................23200.051010000
.................................................................................................................................................................................................TT-----GCG--------------------------------------------------------------------------------G------TGTCCGCAGCAACTCA---CAA..................................................................................................................................................................................................................................................................25200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCCGAGTCGATTGAGCC................................................21200.051000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGT...............................................................................................................................................18200.051000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAACAGCCGAGT..........................................................25200.051010000
...........................................................................................................................................................................................................................................................................................................CAACTCA---CAAC--------G-------------T-------TC--CCC----C.......................................................................................................................................................................................................................19200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAACAGCCGAGTC.........................................................21200.051000010
droAna3
ACACTGCACTC-GTC---TCGACGG---CA---C------CACTGG-------------------------------------------------------------------------------------------------------------------CCCCATC---------------------------------C-----------------------GGGAAAAGCGTTATAACT---------------------------------------------------------------TCAA---CAA---------------------------TT--TTC----ATAATTATACCAT-----TGCAG-----------------AGGGTATTATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACA----TCTCCGACCCTATAAAGTATAT--------ATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCTGT------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................TATAACT---------------------------------------------------------------TCAA---CAA---------------------------TT--TTC----AT......................................................................................................................................................................................................................21201.80363600000
........CTC-GTC---TCGACGG---CA---C------CACTGG-------------------------------------------------------------------------------------------------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.........................................................................................................................................................................................................C-----------------------GGGAAAAGCGTTATAACT---------------------------------------------------------------TCA.....................................................................................................................................................................................................................................................................2220.501000100
......CACTC-GTC---TCGACGG---CA---C------CAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.255050000
.......ACTC-GTC---TCGACGG---CA---C------CACTGG-------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................23200.255500000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTCTGTCTG.........................20200.153300000
........CTC-GTC---TCGACGG---CA---C------CACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
.........TC-GTC---TCGACGG---CA---C------CAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102020000
....................................................................................................................................................................................................................................AAAAGCGTTATAACT---------------------------------------------------------------TCAA---CG...............................................................................................................................................................................................................................................................21200.102000020
......................................................................................................................................................................................................................................AAGCGTTATAACT---------------------------------------------------------------TCAA---CAA---------------------------T..................................................................................................................................................................................................................................21200.051000001
........CTC-GTC---TCGACGG---CA---C------CACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
..........C-GTC---TCGACGG---CA---C------CACTGG-------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................TGCAG-----------------AGGGTATTATAATTTTGGTCA...........................................................................................................................................................26200.051000001
......................................................................................................................................................................................................................................AAGCGTTATAACT---------------------------------------------------------------TCAA---CAA---------------------------TT--...............................................................................................................................................................................................................................22200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTGTGCAACGCAGTGAAGGAGACA----.....................................................................................................................28200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGAGACA----TCTC.................................................................................................................28200.051010000
......CACTC-GTC---TCGACGG---CA---C------CACTGG-------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
droBip1
AAAGCTGCATC-AGCAGCAGGTT-----CAAAGA------AA----C----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATACTC--AAACAAT------AA-------------TTT--------------------TT-GGTTTTG--T--AATTGT----CTCATTATACCCT-----TGCAG-----------------AGGGTATTATAATTTTGTCCAAA-------AGTGTGCAACGCAGTGAAGGAGACA----TCTCCGACCCTATAAAGTATAT--------ATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGT--------------------------CCSizeHit CountTotal NormTotal
No Reads
droKik1
GT-------TC-GCC---AGGGCA---------AC--ACGCAGTGG------------------------------------------------GCGTGCGGC----A-----AAGG---------------------GGGCGTGCCCAAAACACACACACATA-----------------------------------------------------------------------TTTTA--------------------------------------------------------------------------------------------GTTTTTTTGTAATCTTTATTTAATTTTTATACCCT-----TGC-------------------AGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACG----TTTCCGACCCTATAAAGTATAT--------ATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTG-----------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AACTCTAAA--------------------------------------------------------------------------------------------------------ACTGTCAATGACAT--------TTA-----------------AGACAAATAA----------------------------------------------------------------------------------------------------------------------T------TAAGTACGTAAACCAATTT----------------------------TATGAATG--GTT----ATTTTTATACCCT-----TGCAGA------GC--AA---AAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACA----CCTTAGACCCCATAAAGTATAT--------ATATTCTTGATCAGCATCACGAGCAGAGTCGGAATACGTCTGTACGTCTGTCCGTCTG-----------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATGT-GTGGTC-ACA---ATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGGCGCCATAGACAAAAGTACATTAAAGAGAAGTGCGTTTTA-------------------------------------------------------------------------------------------------------GT--TTT----ATTTTTATACCCT-----TGCAG-----------------AGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAAACG----TTTCCGACCCTATAAAGTATAT--------ATATTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGT--------------------------CCSizeHit CountTotal NormTotal
No Reads
droRho1
GAATCGCGTTC-GGCTTTAGGTCAA---CAAATG------TT----T----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAATGTTC---------------------ATAAAA----------AAATCTCCAATTTAATTC-GCTTTTA--A--CATGTT----CTTTTTATACCCT-----TGCAG-----------------AGGGTATTATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACA----TCTCCGACCCTATAAAGTATAT--------ATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTCCGTCTGTCTGT----------------------CCSizeHit CountTotal NormTotal
No Reads
droBia1
AATAACTTA-------------------------------------TTTGTAAATAATAAAACCAT--G-TATGTATGAGTAAAAAAAAGACTCGTGTGCCGC----C-----AAA-----------------------------------------------------------------------------------------------------------------AAAGTGTT--------------------------------------------------------------------------------------------------------------TGA----GTTTTTATACCCT-----TGCAG-----------------AGGGTATAATGATTTCAGTGAAC-------AGTTTGCAACACAGTGAAGAAAACG----TTTCCGACCCCATAAAGTATAT--------ATATTCTTGATCAGCGTCGCTGGACGAGTCGATCTAGCCATGTCCGTCTGTCTGT--------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CG------TTC-ATA---GGGACGGACATACAGA------CA----T---------------------G-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------------------A------TATCGACTCGGCTAG------TG--ACC----CTTTTTATACCCGTTACTCGTAGA------GT--AA---AAGGGTATATTGGATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCG----TTTCCGACCCCATAAAGTATAT--------ATATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCCATGTCCATCTGTCCGTCTGTATGA--------------------ACGCSizeHit CountTotal NormTotal
No Reads
droEug1
CTGGGACCTCT-------------------------------------------------------------------------------------------------------CTTACAATGACCC--------TTT-------G---------------CTAATTAAATACAAGGGGACACAACT----------------------------------------------------------------------------------------------------------------------AT-AC---AGA---------------------------TA--TCA----ATTCTTATACCCGATACTCGTAGA------GT--AA---AAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGATAGAAGGAAGCG----TTTCCGACCCTATAAAGTATAT--------ATATATTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGA----------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ACGCATACAGT-GACAG-----------------C--A------------------------------------------------------------------------------------G------------------------------------------TCAACTGTATGTGTGCACACGT-------------------------------------------------------------------------------------------------------------------ATGCTCATAAA--------T---------------------TG--TAA----ATTTTTATTCCCGTTACTCGTAGA------GT--AA---AATGGTATACTAGATTCCTTGAAA-------AGTATGTAACTGCCAGAAGGAAGCG----TTTCCGACTATATAAAGTATAT--------ATATTCTTGATCAGGATCAATAGGCGAGTCGATCTAGACATGCCCGTCTGTCCGTATGA---------------------------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........T-GACAG-----------------C--A------------------------------------------------------------------------------------G------------------------------------------TCAACTGTATGTGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................25131.00310000000000000000000001000000000000000010000000101000000000000000000000000000000000100000000000000000000000000000000000000000000000000030000310100000110023000000000000000000000000000000000000000000000000000000000000300200001110000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000001000000
..........T-GACAG-----------------C--A------------------------------------------------------------------------------------G------------------------------------------TCAACTGTATGTGTGCA....................................................................................................................................................................................................................................................................................................................................................................................................26122.00220000001000000000000000000000000000000000000000000000000000000000000000000000000000403030000000001000010000001010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000200000001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGCCAGAAGGAAGCG----TTTCCGAC.............................................................................................................27116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000030000000000000000000000000000000000000000100000000000000003000000000002320000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACTGCCAGAAGGAAGCG----TTTCC................................................................................................................26110.00100000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000020000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTAACTGCCAGAAGGA.............................................................................................................................2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010001330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........T-GACAG-----------------C--A------------------------------------------------------------------------------------G------------------------------------------TCAACTGTATGTGTGCAC...................................................................................................................................................................................................................................................................................................................................................................................................2719.0090000000100000000000000000000000000000000000000000000000000010000000000000000000000200010000000000000000000000000200000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGGCGAGTC.........................................................2427.50150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000002000000000000000000200110000100000000000000000000000000000000000000000000000000000000000000000000200000000200000000000000000111000000
..........T-GACAG-----------------C--A------------------------------------------------------------------------------------G------------------------------------------TCAACTGTATGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................2417.0070000000100000000000001100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGGCGAGTCGA.......................................................2627.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000010000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACTGCCAGAAGGAAGCG----TT...................................................................................................................2517.0070000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000110100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTAACTGCCAGAAGG..............................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010102010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................TCGTAGA------GT--AA---AATGGTATACTAGAT..................................................................................................................................................................26100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGACATG.............................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCCTTGAAA-------AGTAT.............................................................................................................................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCCTTGAAA-------AGTATG............................................................................................................................................2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCCTTGAAA-------AGTA..............................................................................................................................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCCTTGAAA-------AGTA..............................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TAGA------GT--AA---AATGGTATACTAGATT.................................................................................................................................................................24120.1720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCCTTGAAA-------AGTATG............................................................................................................................................2560.1710000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TACTCGTAGA------GT--AA---AATGGTA..........................................................................................................................................................................21130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGGCGAA...........................................................22130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAAT..................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000020000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATAT--------ATATTCTTGATCAGGAT......................................................................27200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATAT--------ATATTCTTGATCAGGA.......................................................................26200.1530000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGACATGCCCGTCTGTCCGTAA..............................2580.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TACTCGTAGA------GT--AA---AATGGTATACTAGAT..................................................................................................................................................................2980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GTTACTCGTAGA------GT--AA---AATGGTATACTA.....................................................................................................................................................................2880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ACTCGTAGA------GT--AA---AATGGTATACTAG....................................................................................................................................................................2680.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACAAAGTGATC-TTG---GGAACGAA---AAA-----------------------------ATAACGTT-G-----AGATTCAGCGAGATTCTAGTTTGCAAGTCGGTGCCTTTCCCACAAAGATA-------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------TT--GAT----GTTTTTATACGCGGTACTCGTAGA------CT--AA---AAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGACAGAAGGAAGCG----TTGCCGACTATATAAAGTATAT--------ATATTCTTGATCAGAATCAA-----AAGTCGATCTATCCATGTCCCTCTGTCCGTAT------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGACAGAAGGAA............................................................................................................................251010.2010200000039411732000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGACAGAAGGA.............................................................................................................................24108.908900000037271742011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAAGCG----TT...................................................................................................................2594.7843000200031136000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGAAA-------AG................................................................................................................................................25203.9078000000780000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAAGCG----T....................................................................................................................24103.4034000108000025000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGAAA-------AGT...............................................................................................................................................26201.3026000000000021050000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGACA...................................................................................................................................25121.081300008031100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGACAGAAGGAAG...........................................................................................................................2691.00900000022005000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGACAGAAGGAAA...........................................................................................................................26140.861200000030900000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAAGCG----.....................................................................................................................23110.82900010000007010000
................................................................................................................................................................................................................................................................................................................................................................................TACTCGTAGA------CT--AA---AAGGGTAT.........................................................................................................................................................................2240.75300000000000012000
...................................................................................................................................................................................................................................................................................................................................................................................TCGTAGA------CT--AA---AAGGGT...........................................................................................................................................................................1760.67400000000004000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGACAGA.................................................................................................................................27120.58700110001220000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA-------AGTATGTAACAGACAGAAGGA.............................................................................................................................2680.50400000022000000000
................................................................................................................................................................................................................................................................................................................................................................................TACTCGTAGA------CT--AA---AAGGGT...........................................................................................................................................................................2060.50300000000000030000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCG----TTGCCGACTAT..........................................................................................................2120.50100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTAACAGACAGAAGGAA............................................................................................................................2850.40200000000110000000
....................................................................................................................................................................................................................................................................................................................................................................................................AA---AAGGGTATACTAGA...................................................................................................................................................................16200.40800000000008000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGA.....................................................................................................................................23170.29500000011201000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGAAA-------AGTA..............................................................................................................................................26200.25500000000050000000
...................................................................................................................................................................................................................................................................................................................................................................................TCGTAGA------CT--AA---AAGGGTATA........................................................................................................................................................................2040.25100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................ACTCGTAGA------CT--AA---AAGGGTAT.........................................................................................................................................................................2140.25100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................ACTCGTAGA------CT--AA---AAGGGTA..........................................................................................................................................................................2040.25100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................TAGA------CT--AA---AAGGGTATACTAGATT.................................................................................................................................................................2440.25100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................A------CT--AA---AAGGGTATACTAG....................................................................................................................................................................1850.20100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGACAGAAGGAA............................................................................................................................21120.17200000001001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAAGC..........................................................................................................................22120.17200000000002000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGAAGGAAGCG----TT...................................................................................................................17120.17200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGACAGAAGGAA............................................................................................................................19130.15200000000011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGAA............................................................................................................................20130.15200000000020000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAG......................................................................................................................................15200.15300000000003000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTG............................................................................................................................................................17200.15300000000003000000
.....................................................................................................................................................................................................................................................................................................................................................................................GTAGA------CT--AA---AAGGGT...........................................................................................................................................................................1570.14100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAGGA.............................................................................................................................19140.14200000001001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGACAGAAGGAT............................................................................................................................25150.13200000010001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT--------ATATTCTTGATCAGAATCAA-----..............................................................26150.13200000000110000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAAA-------AGTATGTAACAGACAGAAGGA.............................................................................................................................2580.13100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAAA-------AGTATGTAACAGACAGAAGGAAG...........................................................................................................................2780.13100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA-------AGTATGTAACAGACAGAAGGAA............................................................................................................................2780.13100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................TACTCGTAGA------CT--AA---AAGGGTAA.........................................................................................................................................................................2290.11100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGTTGAAA-------AG................................................................................................................................................15200.10200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGACAGAAGGAAGCG----TT...................................................................................................................21100.10100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT--------ATATTCTTGATCAGA........................................................................21200.10200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGACAGAAGGAAGCG----T....................................................................................................................25100.10100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTATGTAACAGACAGAAGGAAGC..........................................................................................................................25100.10100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTG............................................................................................................................................................21200.10200000000000011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGACAGAAGGAAGCG----T....................................................................................................................21100.10100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTT.............................................................................................................................................................19200.10200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGACAGAAGG..............................................................................................................................23110.09100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGACAGAAGGAAGCG----T....................................................................................................................20110.09100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGACAGA.................................................................................................................................26120.08100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAT--------ATATTCTTGATCAGAATCA....................................................................27120.08100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATAT--------ATATTCTTGATCAGAAT......................................................................27130.08100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGAAGGAAGCG----T....................................................................................................................16130.08100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGTTGAAA-------AGTATGTAACAGA.....................................................................................................................................27130.08100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAGAAGGAAGCG----T....................................................................................................................17130.08100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAT--------ATATTCTTGATCAGAAT......................................................................25130.08100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACAGAAGGAAGCG----T....................................................................................................................18130.08100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGACAGAAGGA.............................................................................................................................17140.07100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAGGAAGCG----T....................................................................................................................15140.07100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGACAGAAGGA.............................................................................................................................15160.06100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGACAGC.................................................................................................................................27170.06100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGACAGA.................................................................................................................................20180.06100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGACAGAAG...............................................................................................................................17190.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAT--------ATATTCTTGATCA..........................................................................21200.05100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................T--AA---AAGGGTATACTAGATTCGTTGAAA-------AC................................................................................................................................................29200.05100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTGAAA-------AGT...............................................................................................................................................20200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGA...........................................................................................................................................................21200.05100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTGAAA-------AGTAT.............................................................................................................................................24200.05100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT--------ATATTCTTGATCAGAA.......................................................................22200.05100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATTCGTTGAAA-------AGTATGTAAC........................................................................................................................................25200.05100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGACAGAAGGAATA..........................................................................................................................27200.05100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGAAA-------AGTA..............................................................................................................................................28200.05100000010000000000
droSec2
AAGC-GTGTTTCAGA---AGATTGA---CACGAC------CA----C----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-AAAGTCCATAAGCGGT------CAA------------------C--------ACTCTCACTC-GTTTTTAAAAAATGTTTT----TTTATTATACCCGTTACTTGTAGA------GT--AA---GGGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAATCGAAGGAATCTGACTATATAAAGCGTAT--------ATATTCTTGATCAGGATCAATAGGCGAGTCGATCTAACCATGTCCGTCTGTCCTTCTGTCCGA------------AT------GAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGGCGAGTC.........................................................2420.5010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGGCGAGTC.........................................................2120.5010001
........................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGCAGA.................................................................................................................................26200.0510010
..............................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTGAAA-------AG................................................................................................................................................21200.0510100
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAAC........................................................................................................................................20200.0511000
droYak3
AATGAGCACTC-GCT---AGGGAA---------GTCTACGCTGTTGCTTGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAGCTGATGTTCACA--------T------TAACGGCATGCACCGGT----------------------------TCAC----TTGTTCT----TTTATTATACCCGTTACTCGTAGA------GT--AATACTAGATTATACTAGATTCGTTGAAA-------AGTATGTAACAAGCAGAAGGAAGCG----TTTCCGACCATATAAAGTATAT--------ATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTTCGTCTGTCCATCCGTATGA----------------------ACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAAGCAGA.................................................................................................................................27201.1022051000000016
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAAGCAGAAGGAAGCG----TT...................................................................................................................25200.601207500000000
...............................................................................................................................................................................................................................................................................................................................................TCAC----TTGTTCT----TTTATTATACCCGT..........................................................................................................................................................................................................2520.50101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGAAGGAAGCG----TTTCCGACCATA.........................................................................................................28200.501002700000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAAGCAGAAGGAAGCG----TTTCC................................................................................................................26200.45905310000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAG...........................................................24200.40808000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGATC.....................................................28200.30600600000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGAAGGAAGCG----TTTCCGACCA...........................................................................................................26200.20404000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGAAGGAAGCG----TTTCCGACC............................................................................................................25200.20401300000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAAGCAGA.................................................................................................................................26200.20402200000000
..........................................................................................................................................................................................................................................................................................................................................................TTCT----TTTATTATACCCGTTACT......................................................................................................................................................................................................2260.17101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAAGCAGAAGGAAGCG----TC...................................................................................................................25200.15300300000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGAAGGAAGCG----TTTCCGACCAT..........................................................................................................27200.15302100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTAACAAGCAGAAGGA.............................................................................................................................27200.10201100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAAA-------AGTATGTAACAAGCAGA.................................................................................................................................25200.10201100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTAACAAGCAGAAGG..............................................................................................................................26200.10202000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAAGCA...................................................................................................................................25200.10200200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAAGCAGAAGGAAGCG----T....................................................................................................................25200.10200110000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGCAGAAGGAAGCG----TTTCCGACCA...........................................................................................................28200.10202000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGTTGAAA-------AGTATGTAACAAGC....................................................................................................................................28200.05100100000000
........................................................................................................................................................................................................................................................................TGATGTTCACA--------T------TAACGGC.................................................................................................................................................................................................................................................................................19200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAAGCAGAAGGAAGCG----.....................................................................................................................23200.05100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAAGGAAGCG----TTTCCGACCATAT........................................................................................................27200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGAAGGAAGCG----TTTCC................................................................................................................21200.05100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGAAGGAAGCG----TTTCCGACCAT..........................................................................................................26200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCCGAGTCGATC.....................................................20200.05100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAAGCAGAAGGAAGCG----TT...................................................................................................................24200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGAAGGAAGCG----TTTCCGACCATA.........................................................................................................27200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGTATAT--------ATATTCTTGATCAGGA.......................................................................28200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATCTGGCCATGTTCGT........................................28200.05100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAAGCAGAAGGAAGCG----TC...................................................................................................................24200.05100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGAAGGAAGCG----TTTCCGACG............................................................................................................25200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAA-------AGTATGTAACAAGCAGAAG...............................................................................................................................26200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAAGCAGAAGGAAGCG----TT...................................................................................................................26200.05100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTGGCCATGTTCGTCTGTCC..................................25200.05100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AGTATGTAACAAGCAGAAGGAAGCG----T....................................................................................................................28200.05100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAAGCAGAAGGAAGCG----TTTCCGACC............................................................................................................28200.05100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGAAGGAAGCG----TTTCCGACCA...........................................................................................................25200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAAGCAGAAGGAAGCG----T....................................................................................................................24200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTGAAA-------AGTATGT...........................................................................................................................................24200.05100010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAGCAGAAGGAAGCG----TTTCCGAC.............................................................................................................28200.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAAGCAGAAGGAAGCG----TTTCCGAC.............................................................................................................29200.05100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAAGCAGAA................................................................................................................................28200.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAAGCAGAAGGAAGCG----TT...................................................................................................................23200.05100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCG----TTTCCGACCATATAAAGTATAT--------A......................................................................................26200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAAGCAGAAGGAAGCG----TTTCCG...............................................................................................................25200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAAGCAGAAGGAAGC..........................................................................................................................21200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATTCGTTGAAA-------AGTATGTAAC........................................................................................................................................25200.05110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAAGCAGAAGGAAGCG----TT...................................................................................................................21200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AGTATGTAACAAGCAGAAGGAAG...........................................................................................................................25200.05100100000000
droEre2
GGTGCCGCA--------------------------------------------------------------------------------------------------------GAGGTAGAAGCC------------------AAT-----------------------------------------------TTATACGGA---------------------------A-----------------------------------------------------A------TGTGTTCATGGAATGATCATAAC--------G-------------C-------TT--AAT----ATTTTTATACCCGCTACTTTTAGA------GG--AA---AAGGGTATACTAGATTCGTTGAAA-------AGTATGTAATGGACAGAAGGAAGCG----TTTCCGACCATATAAAGTATAT--------ATATTCTTGATCAGGATCGATGGCCGAGTCGAACTGGCCATGTCCGTCTGTCCATTTGA------------------------ACCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:02 AM