ID:

dmo_1249

 Coordinate:

scaffold_6496:25620579-25620729 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.3 -38.3 -38.3

Flybase annnotation

exon [dmoj_GLEANR_6088:8]; CDS [Dmoj\GI21301-cds]; intron [Dmoj\GI21301-in]

Repeatable elements

NameClassFamilyStrand
(TCCG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGCGCATTGCCCACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTAGATGCACATTAGCAACAAGTAGCGCATGCATATGCCAACAAAATGTGCAGTCGCTTCGCTGATTGTGTGGAGTGTCAGTCAGTCAGTGAGTCCGTCCGTCCGTCCGTCCGTCCGCCACACACTCCTCCTGACAGCCAGTGGGCCTAAGGGTCTCAGCTGAGGCTTGAGGGGCTAATCGGCCTACGCTAAGCGTT
**************************************************.......(((((.(((..((((..(((((((..(((((((.........)))))))..))))..)))..)))))))..))))).(((((..((.((((..((.((..((......))..))..))..)))))).))))).(((....))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
.........................................................................................................................................................................................................................GACCTGAGAGGCTAATCGGCC............. 21 3 1 3.00 3 2 1 0
.............ACGATGCGCTAAGTGGCCTC.......................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1
...........................................................................................................................................................................................................................CTTGAGAGGGTAATCGGCC............. 19 2 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................GACTTGAGAGGGTAATCGGCC............. 21 3 1 1.00 1 0 1 0
...........................................................................................................................................................................................................................CCTGAGGGGGTAATCGGCC............. 19 2 1 1.00 1 1 0 0
...........................................................................................................................................................TCCGTCCGTCCGTCCGCCAC............................................................................ 20 0 1 1.00 1 0 0 1
.........................................................................................................................................................................................................................GACTTGAGAGGGTAATCGGC.............. 20 3 3 0.67 2 0 2 0
..........................................................................................................................................................................................................................ACCTGAGGGGGTAATCGGC.............. 19 3 2 0.50 1 1 0 0
.........................................................................................................................................................................................................................GACCTGAGAGGCTAATCGGC.............. 20 3 2 0.50 1 1 0 0

Anti-sense strand reads

AGCGCGTAACGGGTGCTACGCGATTCACCGGATTTCGTCGATTGGTGCGACATTCATCTACGTGTAATCGTTGTTCATCGCGTACGTATACGGTTGTTTTACACGTCAGCGAAGCGACTAACACACCTCACAGTCAGTCAGTCACTCAGGCAGGCAGGCAGGCAGGCAGGCGGTGTGTGAGGAGGACTGTCGGTCACCCGGATTCCCAGAGTCGACTCCGAACTCCCCGATTAGCCGGATGCGATTCGCAA
**************************************************.......(((((.(((..((((..(((((((..(((((((.........)))))))..))))..)))..)))))))..))))).(((((..((.((((..((.((..((......))..))..))..)))))).))))).(((....))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V049
head
 V110
male body		 M046
female body
 M060
embryo
.................................TTGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 2 2 4.50 9 6 3 0 0 0
.................................TTGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 21 2 2 4.50 9 8 1 0 0 0
.................................TTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 2 3 4.00 12 11 1 0 0 0
................................TTTGGTCGATTGGTGTGACAAT..................................................................................................................................................................................................... 22 3 3 2.67 8 0 8 0 0 0
.................................TTCGTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 21 2 2 2.50 5 4 1 0 0 0
................................TTTCGTCGATTGGTGGGACGGT..................................................................................................................................................................................................... 22 3 4 2.00 8 8 0 0 0 0
.................................TTCGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
................................TTTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 22 2 1 2.00 2 2 0 0 0 0
................................TTTGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 22 2 1 2.00 2 1 1 0 0 0
................................TTTGGTCGATTGGTGCGACACT..................................................................................................................................................................................................... 22 2 1 2.00 2 2 0 0 0 0
..................................TCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 20 2 3 2.00 6 3 3 0 0 0
................................TTGTGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0
................................CTTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 3 1.67 5 5 0 0 0 0
..................................TGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 20 2 2 1.50 3 3 0 0 0 0
................................TTTTGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 2 1.50 3 3 0 0 0 0
...............................ATTTGGTCGATTGGTGTGACGTT..................................................................................................................................................................................................... 23 3 2 1.50 3 0 0 0 3 0
................................TCTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 2 1.50 3 1 2 0 0 0
................................TTTCGTCCATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 5 1.20 6 5 1 0 0 0
.................................TTCGTCCATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 11 1.09 12 10 2 0 0 0
................................TTTCGTCGATTCGTGCGACAGT..................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0
................................TTTCGTCGCTTGGTGCGACGAT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................TTTGGTCGATTGGTGCGACGGTC.................................................................................................................................................................................................... 23 3 2 1.00 2 2 0 0 0 0
................................TTGGGTCGATTCGTGCGACATT..................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
................................TTTTGTCGATTGGTGCGACGCT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
.................................TTCGTCGATTGGTGCGACTTT..................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................TCGTGGATTGGTGCGACAGT..................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0
.................................TTCGTCGATGGGTGAGACAAT..................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0
................................TTTCGTCAATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
.................................TTCGTCGATTGGTGTGACAAT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
................................TTTGGTCGATTGGTGCGACTTC..................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
.................................TTGGTCGATTGGTGCGACTTT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
................................TTTGGTCGATTGGTGTGACTTT..................................................................................................................................................................................................... 22 3 3 1.00 3 3 0 0 0 0
................................TTTCGTCTATTGGTGCGACGAT..................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
.................................TTAGTCGATTGGTGTGACATT..................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0
..................................TGGTCGATTGGTGTGACAT...................................................................................................................................................................................................... 19 2 2 1.00 2 0 0 2 0 0
................................TTTCGTCGATTGGGGTGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
.................................TGGGTCGATTGGTGCGACAAT..................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0
.................................TTTGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
.................................TTGGTCGCTTGGTGCGACAAT..................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0
................................TGTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 2 1.00 2 1 1 0 0 0
................................TTTGGTCGATTCGTGCGACACT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................TTTAGTCGATTGGAGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
................................CTTGGTCGATTGGTGCGACACT..................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
................................TTTCCTCGATTGGTGCGACTGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................TATTGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................TTTGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
................................TTTGGTCGATTCGTGCGACAGT..................................................................................................................................................................................................... 22 3 3 1.00 3 3 0 0 0 0
................................TTTGGTCGATTGGTGTGACACT..................................................................................................................................................................................................... 22 3 3 1.00 3 1 2 0 0 0
................................TTTGGTCGATTGGTGCGACTTT..................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0
................................TTTCATCGATTGGTGCGACACT..................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
...............................ATTTGGTCGATTGGTGCGACCGT..................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0
.................................TTCGTCGATTGGCGCGACAAT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
.................................TTCGTCGATTGGTGCGAAGAT..................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0
.................................TGGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 3 1.00 3 1 2 0 0 0
................................TTTGGTCGTTTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................TTTCGTCGATCGGTGCGACGGT..................................................................................................................................................................................................... 22 3 3 1.00 3 2 1 0 0 0
.................................TTCGTCGTTTGGTGCGACAGT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
..................................TGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 20 2 2 1.00 2 1 1 0 0 0
................................TTTGGTAGATTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................TTGGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................TTTCGTCCATTGGTGCGACGAT..................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
...............................AGTTGGTCGATTGGTGCGACAAT..................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0
.................................TTCGCCGATTGGTGCGACGTT..................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0
................................GTTCGTCGATTGTTGCGACGTT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
.................................TTCGTCAATTGGTGCGACAGT..................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0
..............................GTTTTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 24 3 2 1.00 2 2 0 0 0 0
................................TTTCGTCGATTGGTGCGACGGC..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
.................................TTGGTCGATTGGTGTGACATT..................................................................................................................................................................................................... 21 2 2 1.00 2 1 0 1 0 0
................................TTTGGTCGCTTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................CTTCGTCCATTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................TTTCGTCGATTGGTGTGGCGTT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
..................................TCGTCGATTGGCGCGACAGT..................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0
................................TTTGGTCAATTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
.................................TTCGTCGATTCGTGCGAGATT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
...................................GGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 19 2 3 0.67 2 2 0 0 0 0
...............................ATTTGGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 23 3 3 0.67 2 2 0 0 0 0
.................................TTGGTCGATTCGTGCGACACT..................................................................................................................................................................................................... 21 3 3 0.67 2 2 0 0 0 0
................................CTTGGTCGATTGGTGCGACAAT..................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
................................TTTGGTGGATTGGTGCGACTTT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
................................TTTGGTCGATTGGTGTGACCTT..................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
..................................TCGTCGATTGGTGTGACGTT..................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
.................................TTGTTCGATTGGTGCGACTTT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
.................................TTCGTCGATTGGGGTGACAAT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
.................................TTGGTCGATTGGTGCGACAGC..................................................................................................................................................................................................... 21 3 6 0.50 3 3 0 0 0 0
.................................TCTGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
.................................TTGGTCGATTGGTGCGGCGTT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
................................TTTGGTCTATTGGTGCGACTTT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
.................................TTTGTCGAGTGGGGCGACATT..................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0
...................................CGTCGATTGGTGCGACGAT..................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0
................................TTTTGTCGATTGGTGTGACAAT..................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
................................TTTGGTCGATTGGTGCGACGCT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
...................................GGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0
.................................TTGGTCTATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
.................................TTGGTCGATTGGTGAGACACT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
.................................TTGGTCGATTGGTGCGACTTC..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
................................TTTAGTCGATTGGTGTGACACT..................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
.................................TTGGGCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
...................................GGTCGATTGGTGTGACATT..................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0
.................................TTGGTCGATTGGTGTGACAT...................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 1 0 0
................................TTTGGTCGATTGTTGCGACAGT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
...............................ATTTGGTCGATTGGTGTGACACT..................................................................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0
................................TTTGGTCGATCGGTGAGACATT..................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
..................................TCGTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
...............................ATTTGGTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 1 0 0
................................TTTCGTCGATTGGTGTGACGAT..................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
...................................CGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 19 2 9 0.44 4 1 3 0 0 0
.................................TCGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 21 3 7 0.43 3 2 1 0 0 0
..................................TCGTCCATTGGTGCGACGGT..................................................................................................................................................................................................... 20 3 14 0.43 6 5 1 0 0 0
..................................TGGTCGATTGGTGTGACATC..................................................................................................................................................................................................... 20 3 5 0.40 2 1 1 0 0 0
.................................TTGGTCAATTGGTGCGACGTT..................................................................................................................................................................................................... 21 3 5 0.40 2 0 2 0 0 0
.................................TTCTTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 5 0.40 2 1 1 0 0 0
.................................CTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 8 0.38 3 2 1 0 0 0
.................................TTCGTCGATTGGTGTGACGT...................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 1 0 0
.................................TTCGTCGATGGGTGTGACAGT..................................................................................................................................................................................................... 21 3 6 0.33 2 2 0 0 0 0
.................................TTGGTCGATTGGTGCGCCTTT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
.................................TTCGCCCATTGGTGCGACGTT..................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
.................................TCCGTCGATTGGTGAGACAAT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
...............................ATTTCGTCGATTGGTGTGACGGT..................................................................................................................................................................................................... 23 3 3 0.33 1 0 1 0 0 0
.................................TTGGTCAATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
.................................TTGGTCGATTGGTGCGA......................................................................................................................................................................................................... 17 1 3 0.33 1 1 0 0 0 0
.................................TTGGTCCATTGGTGCGACGTT..................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
.................................TTGGTCGATTGGTGCGACACA..................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
.................................TTCGGCGATTGGTGGGACGTT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
.................................TTAGTCGATTGGAGCGACAGT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
................................CTTCGTCGATTGGTGCGTCAGT..................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0
.................................TTGGTCGATTGGTGTGACATA..................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
.................................TTCCTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
.................................TTCGTCGATTGTTGTGACAGT..................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
.................................TTCTTCGATTGGTGCGACGAT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
.................................TTCGGCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 7 0.29 2 2 0 0 0 0
.................................TTGGTCTATTGGTGCGACGTT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
................................TTTGGTCCATTGGTGCGACG....................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0
.................................TTCGTCGATTAGTGCGACGGT..................................................................................................................................................................................................... 21 3 8 0.25 2 0 2 0 0 0
.................................TGCGTCGATTGGTGCGAAAGT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
........................................................................................TACGGTTGTTGTGCACGTC................................................................................................................................................ 19 2 4 0.25 1 0 0 0 1 0
.................................TGGGTCGATTGGTGTGACATT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
.................................TTGGTAGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0
.................................TTGGTCGATTGGTGCGAGTTT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
.................................TTCGTCGATTGGTGCCACGGT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
.................................TTGGTCGTTTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0
.................................GTCGTCGATTGGTACGACACT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
.................................TTCGTCGATTGGTGCGAAGGT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
.................................TTGGTCGATTGGAGCGACAGT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
.................................TTTGTCGATTGGTGTGACAAT..................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0
................................TTTCTTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0
.................................TCCGTCGATTGCTGCGACAAT..................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0
..................................GGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0
.................................TTCGTCGATCGGTGCGACGGT..................................................................................................................................................................................................... 21 3 14 0.21 3 2 1 0 0 0
.................................TTGGTCGATTGGTGCGACGTA..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
.................................TTCGTCGATTGGTGCGACGGA..................................................................................................................................................................................................... 21 3 15 0.20 3 3 0 0 0 0
.................................TTCGTCGATTGCTGCGACGCT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
.................................TGCGTCGACTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
..................................TCCTCGATTGGTGTGACACT..................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0
.................................TTCGTCGATTGCTGCGACGAT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
.................................TTCGTCGATGGGTGCGACGAT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
..................................TGGTCGATTGGAGCGACACT..................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0
.................................TTCGTCGCTTGGTGTGACAGT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
.................................TTGGTCGATTGGTGCGTCGTT..................................................................................................................................................................................................... 21 3 20 0.20 4 3 1 0 0 0
................................TTTAGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0
.................................TTCATCGATTGGTGCGAAAAT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
.................................TTGGTCGATTGGTGCGACGTC..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
.................................TTCGTCGATTGGCGCGACGAT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
.................................TTCATCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0
.................................TTCGTGGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
.................................TTCGTCAATTGGTGTGACAGT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
..................................TGGTCGATTGGTGCGCCTTT..................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0
..................................TGGTCAATTGGTGCGACAGT..................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0
.................................TTTGTCGATTGGCGCGACAAT..................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0
.................................TTGGTCGATTGGTGAGACAAT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
.................................TTCGTCTATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
.................................TTCGTCGATTGGTGGCACGTT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
..................................TCGTCGACTGGTGCGACGTT..................................................................................................................................................................................................... 20 2 6 0.17 1 1 0 0 0 0
..................................TGGTCGCTTGGTGCGACAGT..................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0
.................................TTCGTCGATTGGTGCATCGTT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0
................................TTTTGTCGATTGGTGTGACGTT..................................................................................................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0
.................................TTCGTCGATTGTTGCGACGGT..................................................................................................................................................................................................... 21 3 12 0.17 2 2 0 0 0 0
.................................TTGGTCGATTCGTGCGACAGT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0
.................................TTCGTCGATGGGTGCGACGGT..................................................................................................................................................................................................... 21 3 12 0.17 2 2 0 0 0 0
..................................GGGTCGATTGGTGCGACACT..................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0
.................................TTGGTCGATTGGTGCGCCGTT..................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0 0 0
.................................TTCGTCGATTAGTGTGACAAT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0
.................................TACGTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0
.................................TTCGTCGATTCGTGCGACGGT..................................................................................................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0
.................................TTGGTCGATTTGTGCGACTTT..................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0
..................................TGGTCGCTTGGTGCGACTTT..................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0
..................................TGGTCGATTGGTGCGACGTC..................................................................................................................................................................................................... 20 3 14 0.14 2 2 0 0 0 0
..................................TGGTAGATTGGTGCGACAGT..................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0
..................................TGGTCGATTGGTGCGAAAGT..................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0
.................................TTGGTCGATTGTTGCGACAGT..................................................................................................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0
.................................TTCGTCGATTGGCGTGACAGT..................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0
..................................TCGTCGATTGGTGGGACGAT..................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0
...................................................................................................................................................................................................................TCGCCTCTGAACTCCACGAT.................... 20 3 8 0.13 1 1 0 0 0 0
.................................TCCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0
......................................................................................................................................................CAGGCAGGCAGGCAGGCAGGCGG.............................................................................. 23 0 8 0.13 1 0 0 0 0 1
...................................CGTCGATTGGCGCGACAGT..................................................................................................................................................................................................... 19 2 8 0.13 1 1 0 0 0 0
..................................TCGTCGATTGGTGCGAAGGT..................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0
...................................GGTCGATTGGTGCGACGT...................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 1 0 0
.................................TTCGTCGCTTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0
.................................TTCGTCGATTAGTGTGACAGT..................................................................................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0
.................................TTCGTCGATTGGCGCGAAAAT..................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0
.................................TTCGTCGACTGGTGCGACGAT..................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0
..................................TGGTCGATTGGTCCGACACT..................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0
.................................TTCGTCGATCGGTGTGACAGT..................................................................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0
..................................TGTTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0
..................................TGGTCGATTGGTTCGACACT..................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0
.................................TTCGTCGTTTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0
.................................TTCGTCGACTGGTGCGACGTA..................................................................................................................................................................................................... 21 3 10 0.10 1 1 0 0 0 0
.................................CTGGTCGATTGGTGCGACGT...................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 1 0 0
..................................GCGTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0
..................................TGGTCGATTGGAGCGACGTT..................................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0
.........................................................................................................................................................GCAGGCAGGCAGGCAGGCGG.............................................................................. 20 0 10 0.10 1 0 0 0 1 0
..................................TGGTCGATTGGTGCGAGGTT..................................................................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0
..................................TCTTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 20 3 11 0.09 1 0 1 0 0 0
.................................TCGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0
..................................TGGTCGATTGCTGCGACAGT..................................................................................................................................................................................................... 20 3 12 0.08 1 0 1 0 0 0
..................................TAGTCAATTGGTGCGACAGT..................................................................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0
..................................TCGTCGATTGGCGCGAAAGT..................................................................................................................................................................................................... 20 3 13 0.08 1 1 0 0 0 0
..................................TCGTCGATTGGTGCCACGGT..................................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0
.................................TTTGTCGATTGGTGTGACTTT..................................................................................................................................................................................................... 21 3 15 0.07 1 1 0 0 0 0
..................................CGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0
..................................TCGTCGATTGTTGTGACAGT..................................................................................................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0
..................................TCGTCTATTAGTGCGACTTT..................................................................................................................................................................................................... 20 3 18 0.06 1 1 0 0 0 0
...................................CGTTTATTGGTGCGACAGT..................................................................................................................................................................................................... 19 3 18 0.06 1 0 1 0 0 0
..................................GCGTCGATTGGTGTGACGTT..................................................................................................................................................................................................... 20 3 18 0.06 1 0 1 0 0 0
..................................TCGTCGATTAGTGTGACAGT..................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................AGGCAGGCAGGCAGGCGG.............................................................................. 18 0 20 0.05 1 0 1 0 0 0
..................................TCGTCGATTGTTGCGACGGT..................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:25620529-25620779 + dmo_1249 TCGCGCATTGCCCACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTAGATG--------------------------------------------------------------------CACAT--TA-------------------GCAACAAGTAGCG-CATGCATATGC-CAACAAAATGTGCAGTCGCTTCG---------------------------------CTGA---------------------T-------------------------TGTG-------------------------T-GGAGT---GTCA----GTCAGTCAGTGAGTCCGTCCGTCCGTCCGTCCGTCCGCCACACAC-TCCTCCTGACAGCCA------------------------------G---------------------TGGGCC--TAAGGG-----TCTCAGCTGAGGCT-TGAG--GGGCTAATCGGCCTACGCTA-AGCGTT-------
droVir3 scaffold_12875:4450213-4450453 - dvi_5213 TCGCGCATAGCACACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTAGACG-------------------------------------------------------------------GCACAT--TA-------------------GCAACAAGTAGCT-GCT------GCC-AACAAAATGTGCAGTCGCTTCG---------------------------------CTGA---------------------G-------------------------TGTGTGTGTGTGTGTGTGTGTGTAGCT-TT-GAAGTGGTGTCA------------------------------------GTCCGTCACACAC-TCCT---GACAGCCACTG---------------------------G---------------------TGGGCC--TAAGGG-----TCTGAGCCCAGGCT-TGAG--GGGCTAATCGGCCTATGCTA-AGCGTT-------
droGri2 scaffold_15245:498047-498290 + TCGCGTATAGCACACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTAGACC-----------------------------------------------------------------TGCCAC--------------------AAGTGGCAACAAGTAGCA-TAT------GCC-AACCAAATGTGCACTCGCTTCG---------------------------------CTAAATGCGA---------------G-------------------------TGTGTGCGTGTG-GTGTGTGTGGAGTGTGT-GGAGTGGTGTCA----G-------------------------------GTCCATCACACACAGCCT---GAC---------------------------------------------------------TGGGCC--GAAGGG---C-TCGTTGCTCAGGCT-TGAG--GAGCTAATCGGCCTATGCTA-AGCGTT-------
droWil2 scf2_1100000004512:759180-759409 - TCGCGTATTGCCCATGATGCACTCAGTGGCCTAAAGCAGCTAACCACACTGTAAGTAGCTT---T-CAATTGAGGGATGG-------------------------TTAGGAGGGAGG-----------GG---------------------ACCA-AGCAACAAGTAGCC---T------GCCCAACAAAATGTGCAGTCGGTTGA---------------------------------CT-------------------------GAG---------------------T------------------------------GAAGTGGAGTGAA---------------------------------------GTGACAGAA-TACC---GACTGCTATTG---------------------------------------------------G-----------GGGC-TCTT-ACTGTAGCCTCAGAGCAGGCTAATCGGCCTACGTTAAAGCGTT-------
dp5 3:17828417-17828473 - TCGAGGATAGCCCATGATGCACTCAGCGGCCTAAAGCAGTTAACCACACTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_73:222339-222395 + TCGAAGATAGCCCATGATGCACTCAGCGGCCTAAAGCAGTTAACCACACTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:11939345-11939467 + TCCCGGATTGCCCACGACGCCCTGAGCGGCCTGAAGCAGTTAACCACTCTGTAAGTAGACAATTCCCT--------GT-----------------------------------------------ACTCCACTC--TGCTTT----------GAG-AGCAACAAGTGGCC-C------------GGCCAAATGTGCACTCACTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396547:540273-540400 - TCCCGGATTGCCCACGACGCCCTGAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGACAATACCCC--------GT-----------------------------------------------TTTCCACTTTCCACT-GCT------TTGAG-AGCAACAAGTGGCC-C------------GGCCAAATGTGCACTCACTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302682:1975784-1976087 - TCCCGGATTGCCCATGATGCTCTCAGCGGCCTAAAGCAGTTAACCACTCTGTGAGTAGATAATGCCAC--------GA-----------GCATG---GATGTGTGTGGGGGGGAAGTC--ACT---------TT--TACC------------AAG-TGCAACAAGTAGCC-ATC------GC---ACAAAGTGTGCACTCACTTGAGCTGCCCCGT----G---C------ACACGGTGGTGGTGGTGGTGGCAGAGTCACC---TGAGCTG-----------------------------------------------------------------------------------------------------------GAG-TACC---CACTGCTGCTGCTGCTGCTGCTGGAGGGTATGAAGGGAG------------------------AC--ACAAGAGGTGCCTCTG-GGCCTGGCC-AAAAGCGGGCTAATCGGCCCACGCTA-AGCGTTG------
droFic1 scf7180000453948:1015709-1015995 - TCCCGGATTGCCCACGATGCCCTGAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATTCCCCATCGGAG-GTGG------------TGCAGGTG---------------GTGGTGTTG-CCACCACTT--TACTTGC-------TGCAG-TGCAACAAGTAGCCGTTT------GCAGAACAAAATGTGCACTCACTTGAGTTTCCCTG---------C------A-----------CCG-GGGGCCAAAGTCAGC---TGAAG------------------------------------------------------------------------------------------------------------------------------------------------------------GAACGGGGGCAGTGGAAGTGGG---GTGCACGTAAGAGGTGCCTCTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTA-AGCGTTCCCGCCA
droEle1 scf7180000491107:766608-766891 - TCCCGGATTGCCCACGATGCCCTGAGCGGACTGAAGCAGCTAACCACTCTGTAAGTAGATAATGCCCC--------TTGG------------CG---GAG---------------GT---GGTG-TTGCCACTT--TACT-GCTCGGCAG-GCAG-TGCAACAAGTAGCC-ATT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTG---------C------A-----------CTG-AGGGGGAAACTCACC---TGAACCGAGCACTGCATGCATTGCTC------------------------------G----------AG------------------------------------------------------------------------------------------GGGAAC--------------------GGGGC---CAAGAGGTGCCTTTG-GGCCGGGCC-AGAAGCGAGCTAATCGGCCCACGCTA-AGCGTTCCTGCCA
droRho1 scf7180000779911:332694-332960 + TCCCGAATTGCCCACGATGCCCTGAGCGGACTAAAGCAGTTAACCACTCTGTAAGTAGATAATGCCCG--------TTGG------------TG---GAG---------------GT---GGTG-CTGCCACTT--TACCTGC---------CAG-TGCAACAAGTAGCC-ATT------GCAGAACAAAGTGTGCACTCACTTGAGCTGCCCTG---------C------A-----------CTG---GGGCAAACTCACC---TGAACCGAGT-----------CGCAT----C---------------G--------GG----------AG-G----------------------------------------------------------------------------------------GGGAA---------------------TGGGC---CAAGAGGTGCCTTTG-GGCCGGGCC-AGAAGCGAGCTAATCGGCCTACGCTA-AGCGTTCCTGCCA
droBia1 scf7180000302292:3878164-3878458 + TCCCGGATTGCCCACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATGCCCG--------CCGG------------CGCAGGAG---------------GT---GGTGTTTGCCACTT--TACTTGC---------CAG-TGCAACAAGTAGCC-ATT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCCG---GTG---CACCCTGG-----------CTG-A-GGGTAGACCCACC---TGAACCGAGT-----------TGAAT----A-------------------------------------G---------------------------------------------GAA-TA-----------------------------AGGGTAG-----------------GGGGAGTGGGACTGGGC---TAAGAGCTGCCTTTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTT-GGCGTTCCTGCCA
droTak1 scf7180000415795:805084-805377 + TCCCGGATTGCACACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATGCCCA--------C----------GGTGGTG---GAGG----TTAGGAGGAGGTG--GTTT-CTGCCACTT--TACTTGC----CAGCGCAG-TGCAACAAGTAGCC-ATT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGCTG------C------AC----TGCTAACTGCAGGGGTAAACTCACC---TGAAT----------------TGAGT------------------------------G----------AA-T----------------------------------------------------------------------------------------GGGAA---------------------TGGGCCTTTGAGAGGTGCCTTTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTT-GGCGTTCCTGCCA
droEug1 scf7180000409672:678267-678565 - TCCCGAATTGCCCACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATGCCCG--------CTGGTGCTGTCGGTGTTG---GAG---------------GT---GGTGTTTGCCACTT--TACTTGC---------TAG-TGCAACAAGTAGCC-ATT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGC--TTGCTGC------A-----------CTG---GGGTAAACTCACC---TGAACCAC-T---GAGT----TCCAT----A---------------G--------AG----------GG-GG---------------------------------------G--GAG-TA-----------------------------CGGGTAT-----------------------------GAGGC---AAAGAGCTGCCTTCG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTA-AGCGTTCCTGCCA
dm3 chr2R:11769847-11770123 - TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATACCCG--------GTGG------------TG---GAG---------------GT---GTTG-TTGCCACTT--TACTTGC-------TGCAG-TGCAACAAGTAGCC-TTT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGCT---CCCGCA-----------CTC---GGGTAAACTCACC---TGAACCAACT-----------TAAAT------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---TAAGAGTTGCCTCTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTT-AGCGTTCCTGCCA
droSim2 2r:12440158-12440434 - dsi_18439 TCCCGAATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATACCCG--------GTGG------------TG---GAG---------------GT---GTTG-TTGCCACTT--TACTTGC-------TGCAG-TGCAACAAGTAGCC-TTT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGCT---CCCGCA-----------CTC---GGGTAAACTCACC---TGAACCAACT-----------TAAAT------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---TAACAGTTGCCTCTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTT-AGCGTTCCTGCCA
droSec2 scaffold_1:9264200-9264472 - TCCCGAATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATACCCG--------GTGG------------TG---GAG---------------GT---GTTG-TTGCCACTT--TACT-----------GCAG-TGCAACAAGTAGCC-TTT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGCT---CCCGCA-----------CTC---GGGTAAACCCACC---TGAACCATCT-----------TAAAT------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---TAACAGTTGCCTCTG-GGCCAGGCC-AGAAGCGAGCTAATCGACCCACGCTT-AGCGTTCCTGCCA
droYak3 2R:17212922-17213198 + TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATACCCG--------CTGG------------TG---GAG---------------GT---GTTG-TTGCCACTT--TACTGGC-------AGCAG-TGCAACAAGTAGCC-TTT------GCAAAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGCT---CCCGCA-----------CTC---GACTTCACTCACC---TGAACCACCT-----------TAAAT------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---TAAGAGGTGCCTCTG-GGCCAGGCC-AGAAGCAAGCTAATCGGCCCACGCTT-AGCGTTCCTGCCA
droEre2 scaffold_4845:14088057-14088338 + TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATACCCG--------CTGG------------TG---GAG---------------GT---GTTG-TTGCCACTT--TACTTGC-------TGCAG-TGCAACAAGTAGCC-TTT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGCT---TCCGCA-----------CTC---ACATAAACTCACCGACTGAACCGACT-----------TAAAT------------------------------G----------AGGG----------------------------------------------------------------------------------------GGGAG---------------------TGGGC---TAAGAGGTGCCCCTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTT-AGCGTTCCTGCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCGCGCATTGCCCACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTAGATG--------------------------------------------------------------------CACAT--TA-------------------GCAACAAGTAGCG-CATGCATATGC-CAACAAAATGTGCAGTCGCTTCG---------------------------------CTGA---------------------T-------------------------TGTG-------------------------T-GGAGT---GTCA----GTCAGTCAGTGAGTCCGTCCGTCCGTCCGTCCGTCCGCCACACAC-TCCTCCTGACAGCCA------------------------------G---------------------TGGGCC--TAAGGG-----TCTCAGCTGAGGCT-TGAG--GGGCTAATCGGCCTACGCTA-AGCGTT-------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............ACGATGCGCTAAGTGGCCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
......................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCCGTCCGCCAC..................................................................................................................................................2011.001000010
droVir3
TCGCGCATAGCACACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTAGACG-------------------------------------------------------------------GCACAT--TA-------------------GCAACAAGTAGCT-GCT------GCC-AACAAAATGTGCAGTCGCTTCG---------------------------------CTGA---------------------G-------------------------TGTGTGTGTGTGTGTGTGTGTGTAGCT-TT-GAAGTGGTGTCA------------------------------------GTCCGTCACACAC-TCCT---GACAGCCACTG---------------------------G---------------------TGGGCC--TAAGGG-----TCTGAGCCCAGGCT-TGAG--GGGCTAATCGGCCTATGCTA-AGCGTT-------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....CATAGCACACGATGCGCTAAGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTAGCT-TT-...........................................................................................................................................................................................................2130.331001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGTA..................................................................................................................................................................................................................20200.051000000001000000000000000000000000000000000000000000000000000000
droGri2
TCGCGTATAGCACACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTAGACC-----------------------------------------------------------------TGCCAC--------------------AAGTGGCAACAAGTAGCA-TAT------GCC-AACCAAATGTGCACTCGCTTCG---------------------------------CTAAATGCGA---------------G-------------------------TGTGTGCGTGTG-GTGTGTGTGGAGTGTGT-GGAGTGGTGTCA----G-------------------------------GTCCATCACACACAGCCT---GAC---------------------------------------------------------TGGGCC--GAAGGG---C-TCGTTGCTCAGGCT-TGAG--GAGCTAATCGGCCTATGCTA-AGCGTT-------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCGCGTATTGCCCATGATGCACTCAGTGGCCTAAAGCAGCTAACCACACTGTAAGTAGCTT---T-CAATTGAGGGATGG-------------------------TTAGGAGGGAGG-----------GG---------------------ACCA-AGCAACAAGTAGCC---T------GCCCAACAAAATGTGCAGTCGGTTGA---------------------------------CT-------------------------GAG---------------------T------------------------------GAAGTGGAGTGAA---------------------------------------GTGACAGAA-TACC---GACTGCTATTG---------------------------------------------------G-----------GGGC-TCTT-ACTGTAGCCTCAGAGCAGGCTAATCGGCCTACGTTAAAGCGTT-------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TCGAGGATAGCCCATGATGCACTCAGCGGCCTAAAGCAGTTAACCACACTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........AGCCCATGATGCACTCAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................CACTCAGCGGCCTAAAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
TCGAAGATAGCCCATGATGCACTCAGCGGCCTAAAGCAGTTAACCACACTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TCCCGGATTGCCCACGACGCCCTGAGCGGCCTGAAGCAGTTAACCACTCTGTAAGTAGACAATTCCCT--------GT-----------------------------------------------ACTCCACTC--TGCTTT----------GAG-AGCAACAAGTGGCC-C------------GGCCAAATGTGCACTCACTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TCCCGGATTGCCCACGACGCCCTGAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGACAATACCCC--------GT-----------------------------------------------TTTCCACTTTCCACT-GCT------TTGAG-AGCAACAAGTGGCC-C------------GGCCAAATGTGCACTCACTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TCCCGGATTGCCCATGATGCTCTCAGCGGCCTAAAGCAGTTAACCACTCTGTGAGTAGATAATGCCAC--------GA-----------GCATG---GATGTGTGTGGGGGGGAAGTC--ACT---------TT--TACC------------AAG-TGCAACAAGTAGCC-ATC------GC---ACAAAGTGTGCACTCACTTGAGCTGCCCCGT----G---C------ACACGGTGGTGGTGGTGGTGGCAGAGTCACC---TGAGCTG-----------------------------------------------------------------------------------------------------------GAG-TACC---CACTGCTGCTGCTGCTGCTGCTGGAGGGTATGAAGGGAG------------------------AC--ACAAGAGGTGCCTCTG-GGCCTGGCC-AAAAGCGGGCTAATCGGCCCACGCTA-AGCGTTG------SizeHit CountTotal NormTotal
No Reads
droFic1
TCCCGGATTGCCCACGATGCCCTGAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATTCCCCATCGGAG-GTGG------------TGCAGGTG---------------GTGGTGTTG-CCACCACTT--TACTTGC-------TGCAG-TGCAACAAGTAGCCGTTT------GCAGAACAAAATGTGCACTCACTTGAGTTTCCCTG---------C------A-----------CCG-GGGGCCAAAGTCAGC---TGAAG------------------------------------------------------------------------------------------------------------------------------------------------------------GAACGGGGGCAGTGGAAGTGGG---GTGCACGTAAGAGGTGCCTCTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTA-AGCGTTCCCGCCASizeHit CountTotal NormTotal
No Reads
droEle1
TCCCGGATTGCCCACGATGCCCTGAGCGGACTGAAGCAGCTAACCACTCTGTAAGTAGATAATGCCCC--------TTGG------------CG---GAG---------------GT---GGTG-TTGCCACTT--TACT-GCTCGGCAG-GCAG-TGCAACAAGTAGCC-ATT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTG---------C------A-----------CTG-AGGGGGAAACTCACC---TGAACCGAGCACTGCATGCATTGCTC------------------------------G----------AG------------------------------------------------------------------------------------------GGGAAC--------------------GGGGC---CAAGAGGTGCCTTTG-GGCCGGGCC-AGAAGCGAGCTAATCGGCCCACGCTA-AGCGTTCCTGCCASizeHit CountTotal NormTotal
No Reads
droRho1
TCCCGAATTGCCCACGATGCCCTGAGCGGACTAAAGCAGTTAACCACTCTGTAAGTAGATAATGCCCG--------TTGG------------TG---GAG---------------GT---GGTG-CTGCCACTT--TACCTGC---------CAG-TGCAACAAGTAGCC-ATT------GCAGAACAAAGTGTGCACTCACTTGAGCTGCCCTG---------C------A-----------CTG---GGGCAAACTCACC---TGAACCGAGT-----------CGCAT----C---------------G--------GG----------AG-G----------------------------------------------------------------------------------------GGGAA---------------------TGGGC---CAAGAGGTGCCTTTG-GGCCGGGCC-AGAAGCGAGCTAATCGGCCTACGCTA-AGCGTTCCTGCCASizeHit CountTotal NormTotal
No Reads
droBia1
TCCCGGATTGCCCACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATGCCCG--------CCGG------------CGCAGGAG---------------GT---GGTGTTTGCCACTT--TACTTGC---------CAG-TGCAACAAGTAGCC-ATT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCCG---GTG---CACCCTGG-----------CTG-A-GGGTAGACCCACC---TGAACCGAGT-----------TGAAT----A-------------------------------------G---------------------------------------------GAA-TA-----------------------------AGGGTAG-----------------GGGGAGTGGGACTGGGC---TAAGAGCTGCCTTTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTT-GGCGTTCCTGCCASizeHit CountTotal NormTotal
No Reads
droTak1
TCCCGGATTGCACACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATGCCCA--------C----------GGTGGTG---GAGG----TTAGGAGGAGGTG--GTTT-CTGCCACTT--TACTTGC----CAGCGCAG-TGCAACAAGTAGCC-ATT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGCTG------C------AC----TGCTAACTGCAGGGGTAAACTCACC---TGAAT----------------TGAGT------------------------------G----------AA-T----------------------------------------------------------------------------------------GGGAA---------------------TGGGCCTTTGAGAGGTGCCTTTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTT-GGCGTTCCTGCCASizeHit CountTotal NormTotal
No Reads
droEug1
TCCCGAATTGCCCACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATGCCCG--------CTGGTGCTGTCGGTGTTG---GAG---------------GT---GGTGTTTGCCACTT--TACTTGC---------TAG-TGCAACAAGTAGCC-ATT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGC--TTGCTGC------A-----------CTG---GGGTAAACTCACC---TGAACCAC-T---GAGT----TCCAT----A---------------G--------AG----------GG-GG---------------------------------------G--GAG-TA-----------------------------CGGGTAT-----------------------------GAGGC---AAAGAGCTGCCTTCG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTA-AGCGTTCCTGCCASizeHit CountTotal NormTotal
No Reads
dm3
TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATACCCG--------GTGG------------TG---GAG---------------GT---GTTG-TTGCCACTT--TACTTGC-------TGCAG-TGCAACAAGTAGCC-TTT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGCT---CCCGCA-----------CTC---GGGTAAACTCACC---TGAACCAACT-----------TAAAT------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---TAAGAGTTGCCTCTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTT-AGCGTTCCTGCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................AAGCGGCCTAAAGCAGTTAACCACTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TGC-------TGCAG-TGCAACAAGTAGCC-TTT------GCAGA...................................................................................................................................................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GGATTGCCCACGATGCACTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCC-AGAAGCGAGCTAATCG........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................TAGATAATACCCG--------GTGG------------TG---GAG---------------GT---GT..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................T-----------TAAAT------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---TA................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TAAAGCAGTTAACCACTCTGTAAGTAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TGTAAGTAGATAATACCCG--------GTGG------------TG---GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................CACTCTGTAAGTAGATAATACCCG--------GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TGCACTCACTTGAGCTGCCCTGCGGCT................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................T------GCAGAACAAAATGTGCACT.....................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TGTGCACTCACTTGAGCTGCCCTGCGGC.................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ACGATGCACTAAGCGGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAGCGGCCTAAAGCAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCTG-GGCCAGGCC-AGAAGCGAGC..............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GATGCACTAAGCGGCCTAAAGCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................T------GCAGAACAAAATGTGCACTCACTTGAGC............................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................T------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---TAAGAGTTGCC.......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................GTAAGTAGATAATACCCG--------GTGG------------TG---GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TG-TTGCCACTT--TACTTGC-------TGCAG-T...............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TGAACCAACT-----------TAAAT------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---..................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCCCGAATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATACCCG--------GTGG------------TG---GAG---------------GT---GTTG-TTGCCACTT--TACTTGC-------TGCAG-TGCAACAAGTAGCC-TTT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGCT---CCCGCA-----------CTC---GGGTAAACTCACC---TGAACCAACT-----------TAAAT------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---TAACAGTTGCCTCTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTT-AGCGTTCCTGCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............CGATGCACTAAGCGGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
....................................................................................................................................................................................GCAGAACAAAATGTGCACT.....................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
droSec2
TCCCGAATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATACCCG--------GTGG------------TG---GAG---------------GT---GTTG-TTGCCACTT--TACT-----------GCAG-TGCAACAAGTAGCC-TTT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGCT---CCCGCA-----------CTC---GGGTAAACCCACC---TGAACCATCT-----------TAAAT------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---TAACAGTTGCCTCTG-GGCCAGGCC-AGAAGCGAGCTAATCGACCCACGCTT-AGCGTTCCTGCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATACCCG--------CTGG------------TG---GAG---------------GT---GTTG-TTGCCACTT--TACTGGC-------AGCAG-TGCAACAAGTAGCC-TTT------GCAAAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGCT---CCCGCA-----------CTC---GACTTCACTCACC---TGAACCACCT-----------TAAAT------------------------------G----------AG------------------------------------------------------------------------------------------GGGAA---------------------TGGGC---TAAGAGGTGCCTCTG-GGCCAGGCC-AGAAGCAAGCTAATCGGCCCACGCTT-AGCGTTCCTGCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................AAGCGGCCTAAAGCAGTTAACCACTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCCTCTG-GGCCAGGCC-AGAAGCAA................................2711.00100100000000
droEre2
TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTAGATAATACCCG--------CTGG------------TG---GAG---------------GT---GTTG-TTGCCACTT--TACTTGC-------TGCAG-TGCAACAAGTAGCC-TTT------GCAGAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGCT---TCCGCA-----------CTC---ACATAAACTCACCGACTGAACCGACT-----------TAAAT------------------------------G----------AGGG----------------------------------------------------------------------------------------GGGAG---------------------TGGGC---TAAGAGGTGCCCCTG-GGCCAGGCC-AGAAGCGAGCTAATCGGCCCACGCTT-AGCGTTCCTGCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................GACT-----------TAAAT------------------------------G----------AGGG----------------------------------------------------------------------------------------GGGAG---------------------T.........................................................................2011.0010000010
..................GCACTAAGCGGCCTAAAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010

Generated: 05/17/2015 at 11:58 PM