ID:

dmo_1246

 Coordinate:

scaffold_6496:24719511-24719661 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dmoj\GI21269-cds]; exon [dmoj_GLEANR_6059:1]; intron [Dmoj\GI21269-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGGCGGCGTTGTTCAAATCAAGAAAGAGCTGCCCAGCGATGAGATAAAGGTGAGTCTCATGAATGAAATCAACAAGCCCACGCACACACACACACACACATAAACACTTGAAGATACGCAGATTCACACATAAACATACATAAATATATATTTACATACATATATATATATATACTTATTCGAGTAAATTTCGCGTAATTGTCACCTGAATTTTTGGCACAAAACAAACACATTTATAATTAATTACTTC
**************************************************(((.((....(((......)))....)).))).................................((((((((((.((............(((.((((((((........)))))))).)))............)).))))).)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V041
embryo
........GTTGTTCAAATCAAGAAAGAGCT............................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0
...GCGGCGTTGTTCAAATCAAGAAAGAG.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0
.....................AGAGAAAGCTGGCCAGCGAT.................................................................................................................................................................................................................. 20 3 11 0.09 1 0 1 0
..................................................................................................................AAACGCAGATTCACACAAA...................................................................................................................... 19 2 12 0.08 1 0 0 1
.........ATGTTCAAATGAAGAAAGGG.............................................................................................................................................................................................................................. 20 3 13 0.08 1 1 0 0
....................................................................................................ATAAACACTTGATGGTAGG.................................................................................................................................... 19 3 20 0.05 1 1 0 0

Anti-sense strand reads

GTCCGCCGCAACAAGTTTAGTTCTTTCTCGACGGGTCGCTACTCTATTTCCACTCAGAGTACTTACTTTAGTTGTTCGGGTGCGTGTGTGTGTGTGTGTGTATTTGTGAACTTCTATGCGTCTAAGTGTGTATTTGTATGTATTTATATATAAATGTATGTATATATATATATATGAATAAGCTCATTTAAAGCGCATTAACAGTGGACTTAAAAACCGTGTTTTGTTTGTGTAAATATTAATTAATGAAG
**************************************************(((.((....(((......)))....)).))).................................((((((((((.((............(((.((((((((........)))))))).)))............)).))))).)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V041
embryo
.......................TGTATCGATGGGTCGCTAC................................................................................................................................................................................................................. 19 3 15 0.47 7 7 0 0
.............TGTTTAGTTCTTTCTCGA............................................................................................................................................................................................................................ 18 1 3 0.33 1 1 0 0
................TTAGTTCTTTCTCGAGGGTT....................................................................................................................................................................................................................... 20 2 3 0.33 1 0 1 0
.........................TATCGATGGGTCGCTACGCT.............................................................................................................................................................................................................. 20 3 6 0.17 1 1 0 0
...............TTTAGTTCTTTCTCGAGAG......................................................................................................................................................................................................................... 19 2 8 0.13 1 1 0 0
....................TTGTTTCTTGACGGGTCGCG................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 1
............................................................................................................................AGTGTGTTTTTGTATGAGTTTAT........................................................................................................ 23 3 15 0.07 1 0 0 1
............GTGTTTAGTTCTTTCTCG............................................................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:24719461-24719711 + dmo_1246 CAGGC---GGCGTTGTTCAAATCAAGAAAGAGCTGC-----CCAGCGATGAGATAAAGGTGAGT------------------------------------CTCATGAA----TGAA-AT-----C------AACAAGCCCACG---------------CACACACACACACACACAT-----AAACACTTGAAGA--------------TACGCAGATTCACACATAAACATACA-------------TA------AA--------TATA------T-----------ATTTACATAC--ATATATATATA----TATA--------CTTATTCGAGTAAA--------TTTCG----CGTAATT--GTCACCT--------------------GAATTTTTGGCA------------------------------------------------------------------------------------CAAA--ACAAACA---------------------CATTTATAATTAATTA-CTTC
droVir3 scaffold_12875:5372159-5372385 - CAAGC---GGCGTTGTACAGATCAAAAAGGAGCTGC-----CCAGCGACGAGATAAAGGTACGT------------------------------------TTCATGAA----TGAA-A-ACAAA-------------C------T--CACAG---AT--AC----------GCAG-------ACACACACACACACACACATACCGATACA------------------------------G-------------ATA----CACAGTTG------C---------AG--ATAC------------AAATA----AA--------------------------------TCTCG----CGTAATT--TTCACCT--------------------TAATTTTTGGCA---C------------------------------ATGCCAAA--------------------------------GACAACAACTAAAAAAGAAAAC--A-------------------CATTTATAATTAATTA-CTTC
droGri2 scaffold_3284:2030-2278 + CCGGCGGCGGCGTTGTTCAGATCAAAAAGGAGCTGC-----CCAGCGATGAGATAAAGGTACGT------------------------------------TTTATGAA----TGAAAA-ACAGA-------------C------T--CACAG-------AT----------GCAG-------AAACACACACACA--------------CACACACACACACACACATG---------------------------TA----TAGTTGCA------A---------GT--ATTT------------AGATA----CA------------AAGT-----------------TGCGTTCACGTAATT--CTCACCT---------TTAAACAT---TAATTGTTGGCA--------------------------------------AAGC--------------------------------TACAACAACACGAA--AAAAAAACTCACA----C-----ACA--CAATTATAATTAATGA-CTTC
droWil2 scf2_1100000004963:4346710-4346886 + TGAAC-----------------------------------------------------------TGA--------------------------------------------------AG-----T------TACAACTACACACACAC-----------ACGCAC----ACACACAC-----ACACACACACACA--------------CA----CACACACATATGCA---------------------TATACACA----CAAATATA------T---------AT--GTATCTG---ATATATATATG----TACA----T----------------------------------------------------------------------------------------CTAA-TTTGTTAAGTTTAT-------------------------------AAATTTTATAATTTTTATTA--------CA----ACAAA-C---------------------TATTTACA--AAATCA-AATC
dp5 XL_group1e:11970539-11970703 + A--AC-----------------------------------------------------------AAA--------------------------------------------------AA-----C-----AACAAAATACAAACACACACAA-------AT--------ACACAA---------ACAT----------------------A----CATACATAAACACACATACA-------------TAAATATATA----TACATATA------T---------AT--ATAT------------AAATA----TA--------TATCTATATGCATAAATACCATAT------------AAAT--ATAG---------------------CCACACAT----------------------------------ATACATATACAACT-------------------------------------------------------------------------------ACATATGTAATA---TCT
droPer2 scaffold_14:1641988-1642154 - C--AA-----------------------------------------------------------CAA---------------------------------------------------------C-----CACCAAATACAAACACACACAA-------AT--------ACAC-C-------AAACAT----------------------A----CATACATAAACACACATACA-------------TAAATATATA----TACATATA------T---------AT--ATAT------------AAATA----TA--------TATCTATATGCATAAATACCATAT------------AAAT--ATAG--------------------GCCACACTT----------------------------------ATACATATACAACT-------------------------------------------------------------------------------ACATATGTAATAA-TCCT
droAna3 scaffold_13335:1813297-1813462 + A--AG-----------------------------------------------------------CTA----------------------------------------------------------------------------------------AAGCATATACAT----ATACAC---ACA-ACACACACACA------------AATA----CACACACAAACATATATATA-------------TATATATATA----CAAAAATA------T---------AT--ATAT------------GAG-------A--------TATTTATATATAAAAACA------TTATA----TATAAAT--ATGG--------------------GTTTTTTTT-----G---------------T-------------TAGATATGCGACT-------------------------------------------------------------------------------GAATAAAAAGTTT-TTAT
droBip1 scf7180000396540:42882-43042 - A--CA---------------------------------------------------------------------------------------------------------------------------------------------------TATACATATACATAT----ACATAT-----ACATATACATATG--------------CATATACATATACATATACATATACATATACATATACAT-----------------------ATACATATACATATA-----------------------CATATACA----TATA------GTAAA--------------------------GTAACGTTATCTCA----TGG--------GTCATTTAC------A----------------------------AAGCTTTATAA--------------------------------------------TA---------------------------------------AAATAATAT-CATT
droKik1 scf7180000302643:820969-821110 + A--AG---------------------------------------------------------------------------------------------------------------------------------------------------CACACACACACACAC----ACACAC-----ACACACACACACA--------------CACACACACACACACACACACACACC-------------TCAATGTATT----TAAATATA------T-------------------AT--ATATATACATA----TATATTTTTA------------------------------------------------------------------------------------------AT------------------------------------------------------------------------------------------CAAGCTGTTTAA-GAACTTTTCATA--AAATAAATGCA
droFic1 scf7180000453574:3979-4067 + A--TA---------------------------------------------------------------------------------------------------------------------------------------------------TATATATATATATAT----ATATGA-----ATATATATATATA--------------TATATATGAATATATATATA-------------------------------------TATA------T-----------ATATGAATAT--ATATATATATA----TATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT
droEle1 scf7180000491261:462073-462236 + CG------------------------------------------------------------------------------------------------------------------------------------------------------CACACATATATACAT----ACATAC-----ATATATATATATG--------------CATACATATATATATATATA-------------------------------------TATA------T-----------ATATATATAT--ATATATATATA----TATA----CC------GTCGTGTATA--------GTATG----CGGAATTGTGTCACCTCGGATTTTG--------GCCACCACT------C----------------------------AAGCTTGTTA-----------------------------------------------------------------------------------GGTTTTTCATTG-GCCT
droRho1 scf7180000776638:16592-16765 + A--CA---------------------------------------------------------------------------------------------------------------------------------------------------TATACATATACATAT----ACATAT-----ACATATACATATA--------------CATATACATATACATATACATATACATATACATATACAT-----------------------ATACATATACATATA-----------------------CATATACA----TATA----CATATACATA--------------------------------------------------------------------TATATATAA-TATATTATATATATATTA------------------------------------------------------------------T--AAATACATAT-----ACA--TATATATATATAATAT-ATTA
droBia1 scf7180000302258:26497-26663 + A--CA---------------------------------------------------------------------------------------------------------------------------------------------------TATATATATACATAT----ATATAT-----ACATATATATATA--------------CATATATATATACATATATATATACATATATATATACAT-----------------------ATATATATATACATA-----------------------TATATATA----TATA----AGTT-----------------TTCA----TA-----------------------------------------------TAC------------------------------ATGTAACC--------------------------------TACCACGCTTCAAA--ATAAAAACTTTCA-------------------AATAATTTAATA-ATTC
droTak1 scf7180000415846:421958-422120 + A--AA-----------------------------------------------------------TAA---------------------------------------------ATAA-AT-----A------AATAAATACATACATAC-----------ATACAT----ACATACAT-----ACATACATACATA--------------CA--------------------TACATACATACATACAT-----------------------ACATACATACATACA-----------------------TACATACA----TACA----TACATACATAAA--------------------------------------------------------------------TACATAAATAAATAAAACAAATAAAA------------------------------------------------------------------C--AAATA-------------------AATAAATAAATA-AGTA
droEug1 scf7180000409804:2837914-2838076 + A--AT-----------------------------------------------------------CGAAAATATGTTGCCCGCGAAATTTGAAAAGTCACCTTACTTTT----TGAA-CA-----C------ACCTCGTACA-----------TATATACATATACAC----ATATAT-----ACATATATACATA--------------TATACATATATACATATATACATATATA-------------------CATATA----TACATATATAC-----------------ATAT--ATACATATATA----CATA----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrUextra:27931202-27931396 - TTGTT-----------------TAATTAAAGAACATTCCGCTCCAGAGTGAAACGTAGT-----TGAAAATGTCTCGCC--------TTGATAAATCATCTCTCCCTTGGGTTCGA-CA-----ACCTCG-CATAGTTCCATA---------TATACATATATAC------ATATAT-----ACATATATACATA--------------TATACATATATACATATATA---------------------------CATATA----TACATATATAC-----------------ATAT--ATACATATATA----CATA----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:23477173-23477316 - A--TA---------------------------------------------------------------------------------------------------------------------------------------------------TACACATATATATAT----ATATATTTTATA-ATATATACACA----------------------------TATATATATATA-------------TA------CATATA----TATATATATAT-----------------ATAT--ATATATATATA----TGTA------------TTTGTAATAATT------TTA---------------------------------------------------------C------------------------------TTGT----TAAAGCTGAC---------CGAT---------------ATTGTGAA--ATAAAA-------------------------------------A-AAGC
droSec2 scaffold_2:235654-235780 + A--GA---------------------------------------------------------------------------------------------------------------------------------------------------TACATAAATACATAT----ACATAT-----ACATATATTTATA--------------TATATATATATAT-----------------------------------------------A------T---------A--------------TATATATATA----TA------------------------TATTGTGT------------TTGT--TTGG-----------------------------------------------------------------------------CAAATCCGTCACATGCATTTTAT---------------ACTATAGC--ATAAAAA---------------------TATTT-------------ATA
droYak3 X:19231229-19231394 + CAAAC-----------------CAAGAAAAAAAAAA-----CAAGCGAGAAAAAAAAACGACGC---------------------------------------------------AAA-ACAAA-------------CGCATA----CACAG---AAGCTCGCACCT----ACACAC---------ACATACACG------AACGCATATA----CACTCATAGCTGCACATATATA----TATTTA-TA------TA----------TA------TATAT-------------ACATATATGTATTTACA----TA------TA------TTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA
droEre2 scaffold_4690:12443246-12443398 - CA------------------------------------------------------------------------------------------------------------------------------------------------------TACATACATACATAC----ATACAT-----ACATACATACATA--------------CATACATACATGCATACACACATACATACATACATACAT-----------------------ACATACATACACACA-----------------------TATGTACA----TACG----TACATACGTA--------------------------------------------------------------------CTTACATAAATAC------------------TT----------------------------------------------------AC--ATAAAT------A---------------CTTACATA---AATAC-TTAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CAGGC---GGCGTTGTTCAAATCAAGAAAGAGCTGC-----CCAGCGATGAGATAAAGGTGAGT------------------------------------CTCATGAA----TGAA-AT-----C------AACAAGCCCACG---------------CACACACACACACACACAT-----AAACACTTGAAGA--------------TACGCAGATTCACACATAAACATACA-------------TA------AA--------TATA------T-----------ATTTACATAC--ATATATATATA----TATA--------CTTATTCGAGTAAA--------TTTCG----CGTAATT--GTCACCT--------------------GAATTTTTGGCA------------------------------------------------------------------------------------CAAA--ACAAACA---------------------CATTTATAATTAATTA-CTTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........GTTGTTCAAATCAAGAAAGAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...GC---GGCGTTGTTCAAATCAAGAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droVir3
CAAGC---GGCGTTGTACAGATCAAAAAGGAGCTGC-----CCAGCGACGAGATAAAGGTACGT------------------------------------TTCATGAA----TGAA-A-ACAAA-------------C------T--CACAG---AT--AC----------GCAG-------ACACACACACACACACACATACCGATACA------------------------------G-------------ATA----CACAGTTG------C---------AG--ATAC------------AAATA----AA--------------------------------TCTCG----CGTAATT--TTCACCT--------------------TAATTTTTGGCA---C------------------------------ATGCCAAA--------------------------------GACAACAACTAAAAAAGAAAAC--A-------------------CATTTATAATTAATTA-CTTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
CCGGCGGCGGCGTTGTTCAGATCAAAAAGGAGCTGC-----CCAGCGATGAGATAAAGGTACGT------------------------------------TTTATGAA----TGAAAA-ACAGA-------------C------T--CACAG-------AT----------GCAG-------AAACACACACACA--------------CACACACACACACACACATG---------------------------TA----TAGTTGCA------A---------GT--ATTT------------AGATA----CA------------AAGT-----------------TGCGTTCACGTAATT--CTCACCT---------TTAAACAT---TAATTGTTGGCA--------------------------------------AAGC--------------------------------TACAACAACACGAA--AAAAAAACTCACA----C-----ACA--CAATTATAATTAATGA-CTTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGAAC-----------------------------------------------------------TGA--------------------------------------------------AG-----T------TACAACTACACACACAC-----------ACGCAC----ACACACAC-----ACACACACACACA--------------CA----CACACACATATGCA---------------------TATACACA----CAAATATA------T---------AT--GTATCTG---ATATATATATG----TACA----T----------------------------------------------------------------------------------------CTAA-TTTGTTAAGTTTAT-------------------------------AAATTTTATAATTTTTATTA--------CA----ACAAA-C---------------------TATTTACA--AAATCA-AATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................TATGCA---------------------TATACACA----CAAATAT....................................................................................................................................................................................................................................................................................2111.00101000
...............................................................................................................................................................................................CACA--------------CA----CACACACATATGCA---------------------.......................................................................................................................................................................................................................................................................................................20200.05100010
dp5
A--AC-----------------------------------------------------------AAA--------------------------------------------------AA-----C-----AACAAAATACAAACACACACAA-------AT--------ACACAA---------ACAT----------------------A----CATACATAAACACACATACA-------------TAAATATATA----TACATATA------T---------AT--ATAT------------AAATA----TA--------TATCTATATGCATAAATACCATAT------------AAAT--ATAG---------------------CCACACAT----------------------------------ATACATATACAACT-------------------------------------------------------------------------------ACATATGTAATA---TCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................ACAA---------ACAT----------------------A----CATACATAAACACACATA........................................................................................................................................................................................................................................................................................................................2711.0010010000000
..........................................................................................................................................ACAAACACACACAA-------AT--------ACACAA---------AC.......................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
...................................................................................................................................................................................................................................................................................................................................................AATACCATAT------------AAAT--ATAG---------------------CCA......................................................................................................................................................2111.0010000100000
droPer2
C--AA-----------------------------------------------------------CAA---------------------------------------------------------C-----CACCAAATACAAACACACACAA-------AT--------ACAC-C-------AAACAT----------------------A----CATACATAAACACACATACA-------------TAAATATATA----TACATATA------T---------AT--ATAT------------AAATA----TA--------TATCTATATGCATAAATACCATAT------------AAAT--ATAG--------------------GCCACACTT----------------------------------ATACATATACAACT-------------------------------------------------------------------------------ACATATGTAATAA-TCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
A--AG-----------------------------------------------------------CTA----------------------------------------------------------------------------------------AAGCATATACAT----ATACAC---ACA-ACACACACACA------------AATA----CACACACAAACATATATATA-------------TATATATATA----CAAAAATA------T---------AT--ATAT------------GAG-------A--------TATTTATATATAAAAACA------TTATA----TATAAAT--ATGG--------------------GTTTTTTTT-----G---------------T-------------TAGATATGCGACT-------------------------------------------------------------------------------GAATAAAAAGTTT-TTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
A--CA---------------------------------------------------------------------------------------------------------------------------------------------------TATACATATACATAT----ACATAT-----ACATATACATATG--------------CATATACATATACATATACATATACATATACATATACAT-----------------------ATACATATACATATA-----------------------CATATACA----TATA------GTAAA--------------------------GTAACGTTATCTCA----TGG--------GTCATTTAC------A----------------------------AAGCTTTATAA--------------------------------------------TA---------------------------------------AAATAATAT-CATTSizeHit CountTotal NormTotal
No Reads
droKik1
A--AG---------------------------------------------------------------------------------------------------------------------------------------------------CACACACACACACAC----ACACAC-----ACACACACACACA--------------CACACACACACACACACACACACACC-------------TCAATGTATT----TAAATATA------T-------------------AT--ATATATACATA----TATATTTTTA------------------------------------------------------------------------------------------AT------------------------------------------------------------------------------------------CAAGCTGTTTAA-GAACTTTTCATA--AAATAAATGCASizeHit CountTotal NormTotal
No Reads
droFic1
A--TA---------------------------------------------------------------------------------------------------------------------------------------------------TATATATATATATAT----ATATGA-----ATATATATATATA--------------TATATATGAATATATATATA-------------------------------------TATA------T-----------ATATGAATAT--ATATATATATA----TATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTSizeHit CountTotal NormTotal
No Reads
droEle1
CG------------------------------------------------------------------------------------------------------------------------------------------------------CACACATATATACAT----ACATAC-----ATATATATATATG--------------CATACATATATATATATATA-------------------------------------TATA------T-----------ATATATATAT--ATATATATATA----TATA----CC------GTCGTGTATA--------GTATG----CGGAATTGTGTCACCTCGGATTTTG--------GCCACCACT------C----------------------------AAGCTTGTTA-----------------------------------------------------------------------------------GGTTTTTCATTG-GCCTSizeHit CountTotal NormTotal
No Reads
droRho1
A--CA---------------------------------------------------------------------------------------------------------------------------------------------------TATACATATACATAT----ACATAT-----ACATATACATATA--------------CATATACATATACATATACATATACATATACATATACAT-----------------------ATACATATACATATA-----------------------CATATACA----TATA----CATATACATA--------------------------------------------------------------------TATATATAA-TATATTATATATATATTA------------------------------------------------------------------T--AAATACATAT-----ACA--TATATATATATAATAT-ATTASizeHit CountTotal NormTotal
No Reads
droBia1
A--CA---------------------------------------------------------------------------------------------------------------------------------------------------TATATATATACATAT----ATATAT-----ACATATATATATA--------------CATATATATATACATATATATATACATATATATATACAT-----------------------ATATATATATACATA-----------------------TATATATA----TATA----AGTT-----------------TTCA----TA-----------------------------------------------TAC------------------------------ATGTAACC--------------------------------TACCACGCTTCAAA--ATAAAAACTTTCA-------------------AATAATTTAATA-ATTCSizeHit CountTotal NormTotal
No Reads
droTak1
A--AA-----------------------------------------------------------TAA---------------------------------------------ATAA-AT-----A------AATAAATACATACATAC-----------ATACAT----ACATACAT-----ACATACATACATA--------------CA--------------------TACATACATACATACAT-----------------------ACATACATACATACA-----------------------TACATACA----TACA----TACATACATAAA--------------------------------------------------------------------TACATAAATAAATAAAACAAATAAAA------------------------------------------------------------------C--AAATA-------------------AATAAATAAATA-AGTASizeHit CountTotal NormTotal
No Reads
droEug1
A--AT-----------------------------------------------------------CGAAAATATGTTGCCCGCGAAATTTGAAAAGTCACCTTACTTTT----TGAA-CA-----C------ACCTCGTACA-----------TATATACATATACAC----ATATAT-----ACATATATACATA--------------TATACATATATACATATATACATATATA-------------------CATATA----TACATATATAC-----------------ATAT--ATACATATATA----CATA----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTGTT-----------------TAATTAAAGAACATTCCGCTCCAGAGTGAAACGTAGT-----TGAAAATGTCTCGCC--------TTGATAAATCATCTCTCCCTTGGGTTCGA-CA-----ACCTCG-CATAGTTCCATA---------TATACATATATAC------ATATAT-----ACATATATACATA--------------TATACATATATACATATATA---------------------------CATATA----TACATATATAC-----------------ATAT--ATACATATATA----CATA----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................TAATTAAAGAACATTCCGCTCCAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27160.75120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000040100141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAATTAAAGAACATTCCGCTCCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.5690000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000040200110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCCGCTCCAGAGTGAAACGTAGT-----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................A-----ACCTCG-CATAGTTCCATA---------TATACATA.................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TAAATCATCTCTCCCTTGGGTTCGA-C...........................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CTCCAGAGTGAAACGTAGT-----TGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.TGTT-----------------TAATTAAAGAACATTCCGCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26150.4060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010300100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................TAATTAAAGAACATTCCGCTCCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.3150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010100110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCATCTCTCCCTTGGGTTCGA-CA-----ACC..................................................................................................................................................................................................................................................................................................................................................................................................................................26170.2950000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AAGAACATTCCGCTCCAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.2950000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010011000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000
....T-----------------TAATTAAAGAACATTCCGCTCCAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28160.2540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTAAAGAACATTCCGCTCCAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.1930000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................ATCATCTCTCCCTTGGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................21180.1730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000
...TT-----------------TAATTAAAGAACATTCCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.1320000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TT-----------------TAATTAAAGAACATTCCGCTCCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGTT-----------------TAATTAAAGAACATTCCGCTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATTAAAGAACATTCCGCTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....T-----------------TAATTAAAGAACATTCCGCTCCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATTAAAGAACATTCCGCTCCAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....T-----------------TAATTAAAGAACATTCCGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATTAAAGAACATTCCGCTCCAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCATCTCTCCCTTGGGTTCGA-CA-----ACCT.................................................................................................................................................................................................................................................................................................................................................................................................................................27170.1220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CCATA---------TATACATATATAC------ATAT..................................................................................................................................................................................................................................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.TGTT-----------------TAATTAAAGAACATTCCGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTT-----------------TAATTAAAGAACATTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...TT-----------------TAATTAAAGAACATTCCGCTCCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGTT-----------------TAATTAAAGAACATTCCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCATCTCTCCCTTGGGTTCGA-CA-----ACCTCG-..............................................................................................................................................................................................................................................................................................................................................................................................................................29160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATTAAAGAACATTCCGCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....T-----------------TAATTAAAGAACATTCCGCTCCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAATTAAAGAACATTCCGCTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAATTAAAGAACATTCCGCTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................T-----TGAAAATGTCTCGCC--------TTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATTAAAGAACATTCCGCTCCAGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAAGAACATTCCGCTCCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TCTCCCTTGGGTTCGA-CA-----ACCTC................................................................................................................................................................................................................................................................................................................................................................................................................................23170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAAGAACATTCCGCTCCAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TCCCTTGGGTTCGA-CA-----ACCTCG-CATA..........................................................................................................................................................................................................................................................................................................................................................................................................................26170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CCCTTGGGTTCGA-CA-----ACCTCG-CATA..........................................................................................................................................................................................................................................................................................................................................................................................................................25170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTCTCCCTTGGGTTCGA-CA-----ACCTCG-C.............................................................................................................................................................................................................................................................................................................................................................................................................................26170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TCTCTCCCTTGGGTTCGA-CA-----ACCTCG-CA............................................................................................................................................................................................................................................................................................................................................................................................................................28170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AATCATCTCTCCCTTGGGTTCGA-CA-----ACC..................................................................................................................................................................................................................................................................................................................................................................................................................................28170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TAAAGAACATTCCGCTCCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TCTCCCTTGGGTTCGA-CA-----ACCTCG-CATA..........................................................................................................................................................................................................................................................................................................................................................................................................................28170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TAAAGAACATTCCGCTCCAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TCTCCCTTGGGTTCGA-CA-----ACCTCG-CA............................................................................................................................................................................................................................................................................................................................................................................................................................26170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CTCCCTTGGGTTCGA-CA-----ACCT.................................................................................................................................................................................................................................................................................................................................................................................................................................21180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCATCTCTCCCTTGGGTTCGA-CA-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................23180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CATCTCTCCCTTGGGTTCGA-C...........................................................................................................................................................................................................................................................................................................................................................................................................................................21180.0610000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CCTTGGGTTCGA-CA-----ACCTCG-C.............................................................................................................................................................................................................................................................................................................................................................................................................................21180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CTTGGGTTCGA-CA-----ACCTCG-CATAGT........................................................................................................................................................................................................................................................................................................................................................................................................................25180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................ATCTCTCCCTTGGGTTCGA-CA-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................21180.0610000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCATCTCTCCCTTGGGTTCGA-............................................................................................................................................................................................................................................................................................................................................................................................................................................21180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................ATCATCTCTCCCTTGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................18190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TCGA-CA-----ACCTCG-CATAGTTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................22190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AATCATCTCTCCCTTGGGTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TCTCTCCCTTGGGTTCGA-CA-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................20190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droSim2
A--TA---------------------------------------------------------------------------------------------------------------------------------------------------TACACATATATATAT----ATATATTTTATA-ATATATACACA----------------------------TATATATATATA-------------TA------CATATA----TATATATATAT-----------------ATAT--ATATATATATA----TGTA------------TTTGTAATAATT------TTA---------------------------------------------------------C------------------------------TTGT----TAAAGCTGAC---------CGAT---------------ATTGTGAA--ATAAAA-------------------------------------A-AAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT----TAAAGCTGAC---------CGAT---------------ATTGTGAA--ATA..............................................2911.00100000010000000000
........................................................................................................................................................................................................................................................TA------CATATA----TATATATATAT-----------------ATAT--ATATATA..............................................................................................................................................................................................................................................30200.05100000000100000000
droSec2
A--GA---------------------------------------------------------------------------------------------------------------------------------------------------TACATAAATACATAT----ACATAT-----ACATATATTTATA--------------TATATATATATAT-----------------------------------------------A------T---------A--------------TATATATATA----TA------------------------TATTGTGT------------TTGT--TTGG-----------------------------------------------------------------------------CAAATCCGTCACATGCATTTTAT---------------ACTATAGC--ATAAAAA---------------------TATTT-------------ATASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................TA----TA------------------------TATTGTGT------------TTGT--TTGG-----------------------------------------------------------------------------C................................................................................................2111.0010001
droYak3
CAAAC-----------------CAAGAAAAAAAAAA-----CAAGCGAGAAAAAAAAACGACGC---------------------------------------------------AAA-ACAAA-------------CGCATA----CACAG---AAGCTCGCACCT----ACACAC---------ACATACACG------AACGCATATA----CACTCATAGCTGCACATATATA----TATTTA-TA------TA----------TA------TATAT-------------ACATATATGTATTTACA----TA------TA------TTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................TATTTA-TA------TA----------TA------TATAT-------------ACA........................................................................................................................................................................................................................................................2070.14101000000000
droEre2
CA------------------------------------------------------------------------------------------------------------------------------------------------------TACATACATACATAC----ATACAT-----ACATACATACATA--------------CATACATACATGCATACACACATACATACATACATACAT-----------------------ACATACATACACACA-----------------------TATGTACA----TACG----TACATACGTA--------------------------------------------------------------------CTTACATAAATAC------------------TT----------------------------------------------------AC--ATAAAT------A---------------CTTACATA---AATAC-TTACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................TACAT-----ACATACATACATA--------------CA..............................................................................................................................................................................................................................................................................................................................................20200.1022000000

Generated: 05/17/2015 at 11:58 PM