dmo_1241

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCATGAGTCTCACGCGCCTTGTGCAGGCCATATCCTACAAGCAGAAAAAGGTAAGAAAATAATTCGATAATCAATGTGAGACGCAAAATTTGCCGTTCAAAGTCTTTTTGGTTAAGTATTCTATTGTAGTGTAAATACATTTTTGCATTACAGAGAGATCATTCTTATATCTGACTGATTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGTGAAAAGTATGTAACAGGCAGAAG ************************************************............((((((((((((...(((((((((...))))........))))).)))))))....((((.((((((((((((......))))))))))))))))((((.((........)).))))...............)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V049 head	V041 embryo	M046 female body
.........................................................................................................................................................AGAGATCATTTTTAAATCTGA.............................................................................	21	2	1	1.00	1	1	0	0	0
.........................................................................................................................................................TGAGATCATTTTTATCTCTGAC............................................................................	22	3	2	0.50	1	1	0	0	0
.........................................................................................................................................................AGAGATCATTCTTCAATCTGAT............................................................................	22	3	2	0.50	1	0	0	1	0
.........................................................................................................................................................TGAGATCATTTTTAGATCTGACT...........................................................................	23	3	2	0.50	1	0	1	0	0
.........................................................................................................................................................TGAGATCATTCTTAAATCTGATT...........................................................................	23	3	5	0.20	1	0	1	0	0
.........................................................................................................................................................AGAGATCATTTTTAAATCTGATT...........................................................................	23	3	5	0.20	1	0	1	0	0
.........................................................................................................................................................AGAGATCATTTTGATATCTGAT............................................................................	22	3	6	0.17	1	1	0	0	0
.........................................................................................................................................................AGAGATCATTTTTAAATCTGAT............................................................................	22	3	8	0.13	1	0	1	0	0
............................................................................................................................................................GACCATTCTTATACCCGAC............................................................................	19	3	9	0.11	1	0	1	0	0
.........................................................................................................................................................AGAGATCATTTTTATAACTGAT............................................................................	22	3	12	0.08	1	0	0	1	0
.........................................................................................................................................................TGAGATCATTTTTACATCTG..............................................................................	20	3	19	0.05	1	1	0	0	0
...............................................................................................................................................................................................................................TTTGTGAAAAGTATGTAACAGG......	22	0	20	0.05	1	0	0	0	1

CGTACTCAGAGTGCGCGGAACACGTCCGGTATAGGATGTTCGTCTTTTTCCATTCTTTTATTAAGCTATTAGTTACACTCTGCGTTTTAAACGGCAAGTTTCAGAAAAACCAATTCATAAGATAACATCACATTTATGTAAAAACGTAATGTCTCTCTAGTAAGAATATAGACTGACTAATATGGGACTTGGGTAACTTTTACCCTTTAGTCCCATATTACCAAAACACTTTTCATACATTGTCCGTCTTC ************************************************............((((((((((((...(((((((((...))))........))))).)))))))....((((.((((((((((((......))))))))))))))))((((.((........)).))))...............)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V110 male body	M060 embryo
..................................................................................................................................CAGTTCTGTAAAAACGTAATGT...................................................................................................	22	2	1	1.00	1	1	0	0
........................TCCGGTATAGGATGGTAG.................................................................................................................................................................................................................	18	2	4	0.25	1	0	1	0
........................................................TTTATTAAACTATTGGTGACAC.............................................................................................................................................................................	22	3	7	0.14	1	0	0	1
................................................................................................................................................................................................................AGTCCCATATTACCAAAACACT.....................	22	0	20	0.05	1	0	0	1
....................................................................................................................................................................................................................CCATATTACCAAAACACTTTTCATACAT...........	28	0	20	0.05	1	0	0	1
...................................................................................................................................................................................ATATGGGACTTGGGTAACTTTTA.................................................	23	0	20	0.05	1	0	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:24085184-24085434 -	dmo_1241	GCATGA--G---------------------TCTCACGCG--CCTTGTGCAGGCCATATC--------------------------------------------------------------------CTACAAGCAGAAA--AAGGTAAGAA---------------------------AATAA------------------------------------TTCGATAA-TCAATGT-------------G----AGACGC----------AAAATTTGCC-----------------------------------GTTCAAAGTCTTTTTG--------------------------------------------------------------------------------G------TTAAGTATT-----------------CTATTG--------------------------------------------------------------------TAGTGTAAATACATT------------------------------------------------------TT--------------------------------------------------------------------------------------------TGCATTA-CAGAGA----------GA----------------------TCATTCTTATA------------TCTGAC--T----------GATTA------------------------------TACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTT-TTGT-G-------AAAAGTATGTAACAGGCAGAAG
droVir3	scaffold_12723:3631859-3632081 +		ATGGGT--TCATAT-----------------------------------------------------------------------G-----------------------CGTCGGGCCATATATACCCTACACGCA--------------------CA----------------------CAAATAATTTAATTGAATTAAT-----------------------TGA-TCTCTTT-------------G----ACACGA----------GAAACGGGGCCTCCAAACATAAAGTTCTCATTTGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAATAA-TACGTTG-CCGAGA----------AA-------------------------------------ACAGC---ACACAA----------CATTTTTA------------------------------TACCCTGAACCCATT------AA-CAA----------TTTTAT-TTGTGCAAAATGCAAATGTATGTAACAGCCAGAAG
droGri2	scaffold_15203:2797842-2798040 +		GCAAGA--A---------------------------------------------------------------AGG---CATTTGAA-----------------------A-------------------------------------------------------AGTGGAATACGT---------------------------------------------------------------------------------------------CA--ACAG------------------------------------------------------GTATTTT-------------------------------CCGTGAAATTGA---------------------------T---------GAAGTATT----------------------------------------------ATCATAG--------------------------------------TAAAGAATATACATA------------------------------------------------------TAAGCACT---------------------------------------------------------------------------------------ACA----------ATTTACA-CG-----------------------------------AGAATCGCT---TTACTT--C----------TTTTA------------------------------TACCTTGAACCCATAGAAAATGGGCAAAGAGAGTGTAATAGTT-TTGTGC-------ACAAGTATGTAATATGCAGAAG
droWil2	scf2_1100000004585:2448667-2448889 -		ATGCTA--C-----------------------------------------CACTA------------------------------------------------------------------TAGAAACATCATAAA--------------------TA----------------------AAAATATGTTTATTAAACTAA------------------------------------------------------TACAA----------AAAAA----------------------------------------TTCTAAAA------------------------------------------------------------------------------------TCCGA------TTTGGTATT-----------------CCGTTG--------------------------------------------------------------------TATTTAAA--ACAAA------------------------------------------------------TTAGCTCA--------------------------------------------------CTGATTCACTCAAGCTAGGTTTTAATCCT--------------------------------------------------------------T---------ATT---CAATTC--A----------CTTTATACTCTGTTCGCTTAG--------------AACCC----------------TT-GC-AGAGGGTATTATTAAATTTGT-C-------AGATGTTTGTAACGCACAGAAG
dp5	Unknown_singleton_1941:1982-2204 +		AAGCGA--T-----------------------------------------ATC--------------------------------------------------------------------------C-ATGAGCTGAAA--ACGATTAAAAAATAC----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGTTACAGAAGAAAAGAAATTAATTTATTTTAAATTCGTTTTTG--------------------------------------------------------------------------------------------------------------------------------------------------CTTAACATATGTATACATAATTAATTAATATA---------------------------------------------------------------------------------------ACA----------TTTTTGA-GA-----------------------------------ACAAGCGGT---CCACGC--T----------ATTTA------------------------------TACCCGATACTCAAA----ATAA-GTATTGGGGTATATTAGAT-TTGTGGTGAAAGTGGATGTGTGTAACGTCCAGAAG
droPer2	scaffold_76:93205-93427 +		AAGCGA--T-----------------------------------------ATC--------------------------------------------------------------------------C-ATGAGCTGCAA--ACGATTAAAAAATAC----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGTTACAGAAGAAAAGAAATTAATTTATTTTAAATTCGTTTTTG--------------------------------------------------------------------------------------------------------------------------------------------------CTTAACATATGTATACATAATTAATTAATATA---------------------------------------------------------------------------------------ACA----------TTTTTGA-GA-----------------------------------ACAAGCGGT---CCACGC--T----------ATTTA------------------------------TACCCGATACTCAAA----ATGA-GTATTGGGGTATATTAGAT-TTGTGCTAAAAGTGGATGTGTGTAACGTCCAGAAG
droAna3	scaffold_12911:266821-267036 +		GAATCA--A---------------------CCCCGGG-ATTCCTTAGACAG----------------------------------------------------------------GTAATTTATATTAT--AAAGGTAAT--AAGTTACGAA---------------------------AATA-----------------------------------AATTAGATAAAACAATCT-------------TAAAT------AAAATTTTTTAT--TTTC-------------------------------------------------------------------------------------------------------------------------------------------TCG--------------------------------------------------C----------------------------------------------------------------TATATATGAAAGCTTC------------------------------------CTTGTGTT---------------------------------------------------------------------------------------ATA----------TCTTGGAAGA-----------------------------------AAAAACTTT---TTTTTA--T----------TTGTA------------------------------TACCCT-----TGT-------------AGAGGGT--ATTATAA-TTTTCG-------TGAAGTGTTCAATGCAGTGAAG
droBip1	scf7180000395238:25887-26078 +		TACAAT--T------------------------------------------------------------------------------------------------------------------------------AAAGA--AAATTTAAAAAATAA----TAACTA---------------------------------------------------------------------------------------------TAAAAGAAAGAAAAA----------------------------------------GTTCAAAGTCCTTACGAGGATTAT-------------------------------TACTGGTATAGG---------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------TAGTACTGGTATTA------------------------------T------------T-------------------------------------------------AA---------------------------------ACGTATGCTATATTTTAC--T----------TTTTA------------------------------TACCTGGTACTCGTA------GA-CTACAAGGGTATATTGTAG-TCGTGT-------GAATGTATGTAACATAATGAAG
droKik1	scf7180000302437:50564-50793 -		CGGTCC--A----------------------------------------------TCTCCCCTAAGAAGTAAGAAGG---AAAGA-----------------------------------------------------------------------------------AAAATTAGTTGACTGG---------------------------------------------------T-------------T----AT----------------------------ATA-------TTTATATATGGAAAGTTAAAT-------A----------------TTCATTGAATTATTTATTTTGCTTCCTTTTA-----------------------------------------------TTTAAATATTTATTTTTTGTTATTTATTTATTTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTA---TT-TATTTATTTA------------------------------TTTTTGGTTATTATA------CC-CTTGCAGGGTATTATAGTT-TCAGTC-------AGAAGTTTGCAACGCAGTGAAG
droFic1	scf7180000453840:89748-89921 +		AAAAAT--GTTCGA-----------------------------------------------------------------------A-----------------------AATCAAACATTTTTCATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAAATTTTTTTTA-------------------------------------------------------------------------------------A----------------------------------CTTTTAGAAAATCTATTGACTACATTTGAGCACCTTCTTAACAA----------------------------------------------------ACTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG----------TG------------ACAAAC--T----------TTTTA------------------------------TACCC-----TTGCA------GA-GCAAAAGGGTATTATAATT-TCAGTC-------AGAAATTTGCAACGCAGTGAAG
droEle1	scf7180000491238:578883-579121 -		CCTTTT--G---------------------------------------------------------------GAG---TTGCTATA-----------------------C-----------------C-ATAACCTTAAA--AAAGTTTAAAAATACATTCTAAATT---------------------------------------------------------------------------------------------TAAAAGATATAA--TTAG-------------------------------------------------------------------------------------------------------------------------------------------ACAT------------------------------------------------------------------------------------------------------------------GGTATTTAAGGTTTTGTTTTGTTTGTAGCTTAACAAATCTGTAATTA----------------TAAAACTAAAATTA------------------------------T------------T--ACAT-----AAA----------------------------------------------------------------------ATAAATATT---TTATAA---AAC-GACCATATTTA------------------------------TACCCGTTACTCGTA------GA-GTAAAAGGGTATATTGTAT-TCGTTG-------GAAAGTATGTAAAAGGTAGAAG
droRho1	scf7180000757760:808-1020 -		CTACAA--GTTCAA------------------------------------------------------------------AAA----------------------------------------------------------------------ATAC----TAATTA------------TTTAG----------------------TTCGCTAT------------AA-ACAATGT-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACATTAAAGGACATCATTTATACTCTGGTCAGAACAACATTTGTTACAATCTAGAT---TTTATGTATCTAGGATTTTACTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------ATTATC---CA-TATTTAATTA------------------------------TACCCGTTACTCGTA------GA-GTAAAAGGGTATATTGTAT-TCGTGC-------AAAAGTATGTAACAGCTAGAAG
droBia1	scf7180000301506:2568105-2568359 -		CATGCG--A---------------------T-TTATGCA----------------------CTCAGCA--------------------------------------------------------------TATGATGAAAATGAGGT------------------------------------------------------------------------------------AGTGCGCCAAAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTGTTACGA-----------G---------------------------------------------------------------------ATCAAGGGCGAGATACAAAAATCAAGTCAATCTAAATAAA-GTACATAT----T--AAAGATAAAATAGT--------GTTTGCCTTAAAAAA----------AAGGGTGTTCATTTATTGTTGTAATTA----------AAGCTAT---TTTCAG--T----------TATTT------------------------------TACCCGTAACTCGTA------GA-GTAAAAGGGTATACTAGAT-TCGTCA-------GAAAGTATGTAACAGGCAGAAG
droTak1	scf7180000415359:6585-6793 -		TCTAAC--A---------------------------------------------------------------AG--T---AAAAT-----------------------------------------------------------------------------------AAAAGTCTTTGAATAA------------------------------------CT-GTTAT-TTGTTGT-------------G----GG----------------------------ATA-------TATAAAAGTCGCACGATAAAA-------G----------------TTTACTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAT-------------------------------------------------------CAACAGATTGCAT--GAAAATAAACAATT--------CTGCGTTTTTAGAAA----------AA----------------------TTC--------------------TACCTA--T----------TTTTA------------------------------TACCCGTTACTCTT-------GA-GTAAAAGGGTATATTAGAT-TCGTGC-------AAAAGTATGTAACAGCTAGAAG
droEug1	scf7180000407331:71350-71562 +		TTGATC--G-----------------------------------------GACCATGTCTTCTTAGTAGAAGATA---AAGGGGTAATATTTGATGTGAATCGTTCGAAGGATTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGT--------------------------------------------------------------------------------------------------------------------------------------------TTTGC------TTTTTTAGATTTGTATTTA------------AATAGGG------------------------------------------CATTGGATTTCCT--GTAAGAGATCAAAG--------C-------------------------A-------------------------------------GC---------------AGC-GCTCCTAATTA------------------------------TACCCGTTACTCGTA------GA-GTAAAAGGGTATACTAGAT-TCGTTG-------AAAAGTATGTAACAGATAGAAG
dm3	chr4:1123463-1123645 -		GCAGAA--G---------------------------------------------------------------AAA---CAGTCGCA-----------------------A---------------------------------------------------------------------AATAA------------------------------------CTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTAATGAAAAAGGAATTCTAG--------------------------------------------------------------------------------------------------------------------------------------------------CTTCAAAGAT--TTAGATCACGAAGCAATTTA---------------------------------------------------------------------------------------ATT----------TGGTATA-CA-----------------------------------ATAGATGCT---TGACAA--T------ATATAATTA------------------------------TATCCGTTATTCGTA------GA-GTAAAAGTGCATACTAGAT-TCTTT--------GAAAGTATGTAACAGGCAGAAG
droSim2	x:20503093-20503274 +		GCTGAA--T---------------------------------------------------------------AG--GGTAATTGCA-----------------------------------------------------------------------------------------------GAA--------------------------------------------------------------------------------------------------------------TTTGTATACGGAAA---------------------------------------------------------------------------------------------GAAAAAGAAA------ATAT------------------------------------------------------------------------------------------------------------------GACGTTCGTATTTCTCGTTAGTATATG-------------------------ATACTCTA---------------------------------------------------------------------------------------GCA----------ATTCCAT-TG-----------------------------------TCGAGTGCT---CTCTTG--T----------AATTA------------------------------TAACCATTACTCGTA------GA-TTGAAGGGAAATACTAGAA-TCGTTA-------AAAAATTCATAACAGGCAGAAG
droSec2	scaffold_11:1793302-1793475 -		AAAGCT--A---A-------------------------------------G-----------------------------A---------------------------------------------------AGCTATGG--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAT---------------------------GAAAGAGAAA---------ATGTATG----------------------------------------------TACACAGTGTTTTATT--------------------------------------TACTTA---------------------------------------------------------------------ATTGAGAGTA-------------------------------------ATTT-----GCTT-----TAAACAA--------------------T----------AA----------------------TCA-----------TATG-------------TATA-TATCATATGTA------------------------------TTATTATTACCCATT------GA-CTACAAGGGTATACA-G-A-TCGTTG-------AAAAGTACGTAACAGCTAGAAG
droYak3	3R:24864163-24864378 -		TCATGTAAGCGAATGAAATATTGAAAGCAAT-------------------ATA--------------------------------------------------------------------------A-GT----------------------------------------------------------------------------------------------------GATATG-CAAAACAATATTT----------------------------------------------------------------ATTCAAAATTATTATGACG------------------------------------CGATGTTA-------------------------------------------AATATTTCAAAGGTGTTATTGATGCATTTTT--------------------------------------------------------------------TTTAAG--ATGCA----------TA-AGTTGTCATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---ACAGTC--T----------TTTTA------------------------------TACCCGTTACTCGTA------GA-GTAAAAGGGTATACTAGAT-TCGTTG-------AAAAGTATGTAACAGGCAGAAG
droEre2	scaffold_4929:16027407-16027615 -		AAGAAA--GGAAAA------------------------------------------------------------------GAAAT----------------------------------------------------------------------A--------------A--------AGT--------CATTTAACTAATTTAATTCGCGATAATAAACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTAATGTTTACACGCTATTTTTTATTTAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-TGTT----------------------------------------TTA----------TA--AGGAG---------CT--T----------TTTTGTACCATTTCTGTTTATAATTTTTGTAATTATGCCCGTTACTCGTA------GA-GTAAAAGGGTATACTATAT-TCGTTG-------AAAAGTACGTAACAGGCAGAAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GCATGA--G---------------------TCTCACGCG--CCTTGTGCAGGCCATATC--------------------------------------------------------------------CTACAAGCAGAAA--AAGGTAAGAA---------------------------AATAA------------------------------------TTCGATAA-TCAATGT-------------G----AGACGC----------AAAATTTGCC-----------------------------------GTTCAAAGTCTTTTTG--------------------------------------------------------------------------------G------TTAAGTATT-----------------CTATTG--------------------------------------------------------------------TAGTGTAAATACATT------------------------------------------------------TT--------------------------------------------------------------------------------------------TGCATTA-CAGAGA----------GA----------------------TCATTCTTATA------------TCTGAC--T----------GATTA------------------------------TACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTT-TTGT-G-------AAAAGTATGTAACAGGCAGAAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGT-G-------AAAAGTATGTAACAGG......	22	20	0.05	1	1	0	0	0	0	0

droVir3

ATGGGT--TCATAT-----------------------------------------------------------------------G-----------------------CGTCGGGCCATATATACCCTACACGCA--------------------CA----------------------CAAATAATTTAATTGAATTAAT-----------------------TGA-TCTCTTT-------------G----ACACGA----------GAAACGGGGCCTCCAAACATAAAGTTCTCATTTGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAATAA-TACGTTG-CCGAGA----------AA-------------------------------------ACAGC---ACACAA----------CATTTTTA------------------------------TACCCTGAACCCATT------AA-CAA----------TTTTAT-TTGTGCAAAATGCAAATGTATGTAACAGCCAGAAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAAAATGCAAATGTATGTAACAG.......	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTA------------------------------TACCCTGAACCCAT.................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GCAAGA--A---------------------------------------------------------------AGG---CATTTGAA-----------------------A-------------------------------------------------------AGTGGAATACGT---------------------------------------------------------------------------------------------CA--ACAG------------------------------------------------------GTATTTT-------------------------------CCGTGAAATTGA---------------------------T---------GAAGTATT----------------------------------------------ATCATAG--------------------------------------TAAAGAATATACATA------------------------------------------------------TAAGCACT---------------------------------------------------------------------------------------ACA----------ATTTACA-CG-----------------------------------AGAATCGCT---TTACTT--C----------TTTTA------------------------------TACCTTGAACCCATAGAAAATGGGCAAAGAGAGTGTAATAGTT-TTGTGC-------ACAAGTATGTAATATGCAGAAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

ATGCTA--C-----------------------------------------CACTA------------------------------------------------------------------TAGAAACATCATAAA--------------------TA----------------------AAAATATGTTTATTAAACTAA------------------------------------------------------TACAA----------AAAAA----------------------------------------TTCTAAAA------------------------------------------------------------------------------------TCCGA------TTTGGTATT-----------------CCGTTG--------------------------------------------------------------------TATTTAAA--ACAAA------------------------------------------------------TTAGCTCA--------------------------------------------------CTGATTCACTCAAGCTAGGTTTTAATCCT--------------------------------------------------------------T---------ATT---CAATTC--A----------CTTTATACTCTGTTCGCTTAG--------------AACCC----------------TT-GC-AGAGGGTATTATTAAATTTGT-C-------AGATGTTTGTAACGCACAGAAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-C-------AGATGTTTGTAACGCAC.....	21	16	0.06	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT-C-------AGATGTTTGTAACGC.......	20	20	0.05	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGT-C-------AGATGTTTGTAACG........	21	20	0.05	1	0	0	0	1	0

dp5

AAGCGA--T-----------------------------------------ATC--------------------------------------------------------------------------C-ATGAGCTGAAA--ACGATTAAAAAATAC----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGTTACAGAAGAAAAGAAATTAATTTATTTTAAATTCGTTTTTG--------------------------------------------------------------------------------------------------------------------------------------------------CTTAACATATGTATACATAATTAATTAATATA---------------------------------------------------------------------------------------ACA----------TTTTTGA-GA-----------------------------------ACAAGCGGT---CCACGC--T----------ATTTA------------------------------TACCCGATACTCAAA----ATAA-GTATTGGGGTATATTAGAT-TTGTGGTGAAAGTGGATGTGTGTAACGTCCAGAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGTGGTGAAAGTGGATGTGTG.............	23	20	4.80	96	0	0	0	0	0	1	18	0	77	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTACAGAAGAAAAGAAATTAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	3.00	12	0	10	0	0	0	0	1	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTACAGAAGAAAAGAAATTAATTTATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	1.67	5	0	1	0	0	0	0	2	1	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGTGGTGAAAGTGGATGTG...............	21	20	1.40	28	0	0	0	0	28	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTACAGAAGAAAAGAAATTAATTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	1.00	3	0	1	0	0	0	0	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGTGGTGAAAGTGGATGTGTGTA...........	25	20	1.00	20	0	20	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTGGATGTGTGTAACG........	21	20	0.45	9	0	9	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGTGGTGAAAGTGGATGTGTGTAAC.........	27	20	0.45	9	0	9	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGTGGTGAAAGTGGATG.................	19	20	0.45	9	0	0	0	0	0	0	0	0	8	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAT-TTGTGGTGAAAGTGG....................	21	20	0.40	8	0	0	0	0	0	0	0	0	8	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTGTGTA...........	23	20	0.40	8	0	8	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTGTGTAA..........	24	20	0.35	7	0	6	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAT-TTGTGGTGAAAGTG.....................	21	20	0.35	7	0	6	0	0	0	0	0	1	0	0
...................................................................................................................................................TAAAAAATAC----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGTTACAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTACAGAAGAAAAGAAATTAATTTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTGTGTAAC.........	25	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTGGATGTGTGT............	20	20	0.30	6	0	6	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGTGGTGAAAGTGGAT..................	18	20	0.30	6	0	0	0	0	0	0	0	5	1	0
......................................................................................................................................................AAAATAC----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGTTACAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TTGTGGTGAAAGTGGATGT................	21	20	0.25	5	0	0	0	0	0	0	5	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAT-TTGTGGTGAAAGTGGATG.................	24	20	0.20	4	0	0	0	0	0	0	0	4	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTGGATGTGTGTA...........	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTACAGAAGAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	5	0.20	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAT-TTGTGGTGAAAGTGGA...................	20	20	0.20	4	0	3	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGAT-TTGTGGTGAAAGTGGA...................	25	20	0.20	4	0	0	0	0	0	0	0	4	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAT-TTGTGGTGAAAGTGGAT..................	23	20	0.15	3	0	0	1	0	0	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTGGATGTG...............	20	20	0.15	3	0	0	0	0	0	0	3	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGTGGTGAAAGTGGATGTGTGTC...........	25	20	0.10	2	0	0	0	0	0	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGATGTGTGTAACG........	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGATGTGTGTAACG........	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-TTGTGGTGAAAGTGGATG.................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGTGGTGAAAGTGGATGTGTGTAACG........	28	20	0.10	2	0	0	0	0	0	0	2	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGAT-TTGTGGTGAAAG.......................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAGAT-TTGTGGTGAA.........................	20	20	0.10	2	0	0	0	0	0	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATATTAGAT-TTGTGGTG...........................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAT-TTGTGGTGAAAGTGGATGTG...............	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTGTGTAACG........	26	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-GTATTGGGGTATATTAGAT-TTGT...............................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAAA----ATAA-GTATTGGGGTAT...........................................	27	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAAA----ATAA-GTATTGGGGT.............................................	25	17	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAA----ATAA-GTATTGGGGTAT...........................................	21	18	0.06	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAAA----ATAA-GTATTGGGG..............................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTCAAA----ATAA-GTATTGGGG..............................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCAAA----ATAA-GTATTGGG...............................................	23	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATATTAGAT-TTGTGG.............................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGTGGTGAAAGTGGA...................	17	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGGTATATTAGAT-TTGTGGTGAA.........................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAT-TTGTGGTGAAAGTGGA...................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TTGTGGTGAAAGTGGAT..................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTGA..............	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTGGATGTGTGTAACG........	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTGTGTAACGTCCAGA..	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAT-TTGTGGTGAAAGTGGAT..................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGGATGTGTGTAACG........	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTGGATGTGTGTAA..........	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGAT-TTGTGGTGAAAGTGG....................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAT-TTGTGGTGAAAGTGGATG.................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAT-TTGTGGTGAAAGTGG....................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAT-TTGTGGTGAAAGT......................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTGTGTAACGTC......	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTGGATGTGTG.............	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAAGTGGATGTGTGTAA..........	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

AAGCGA--T-----------------------------------------ATC--------------------------------------------------------------------------C-ATGAGCTGCAA--ACGATTAAAAAATAC----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATGTTACAGAAGAAAAGAAATTAATTTATTTTAAATTCGTTTTTG--------------------------------------------------------------------------------------------------------------------------------------------------CTTAACATATGTATACATAATTAATTAATATA---------------------------------------------------------------------------------------ACA----------TTTTTGA-GA-----------------------------------ACAAGCGGT---CCACGC--T----------ATTTA------------------------------TACCCGATACTCAAA----ATGA-GTATTGGGGTATATTAGAT-TTGTGCTAAAAGTGGATGTGTGTAACGTCCAGAAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCAAA----ATGA-GTATTGGGGTATA..........................................	25	20	3.40	68	0	68	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TATTTTAAATTCGTTTTTG--------------------------------------------------------------------------------------------------------------------------------------------------CTTAAC............................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TATTTTAAATTCGTTTTTG--------------------------------------------------------------------------------------------------------------------------------------------------CTTAA.............................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATGTGTGTAACG........	21	20	0.30	6	0	6	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAG	19	20	0.25	5	0	0	0	0	0	5
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTAAAAGTGGATGTGTGTAACGT.......	27	7	0.14	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAT-TTGTGCTAAAAGTGGA...................	22	9	0.11	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAAGTGGATGTGTGTA...........	20	10	0.10	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA----ATGA-GTATTGGGGTA............................................	19	20	0.10	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------TACCCGATACTCAAA----ATGA-G......................................................	21	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGTGTAACGTCCAGA..	19	20	0.05	1	0	0	1	0	0	0

droAna3

GAATCA--A---------------------CCCCGGG-ATTCCTTAGACAG----------------------------------------------------------------GTAATTTATATTAT--AAAGGTAAT--AAGTTACGAA---------------------------AATA-----------------------------------AATTAGATAAAACAATCT-------------TAAAT------AAAATTTTTTAT--TTTC-------------------------------------------------------------------------------------------------------------------------------------------TCG--------------------------------------------------C----------------------------------------------------------------TATATATGAAAGCTTC------------------------------------CTTGTGTT---------------------------------------------------------------------------------------ATA----------TCTTGGAAGA-----------------------------------AAAAACTTT---TTTTTA--T----------TTGTA------------------------------TACCCT-----TGT-------------AGAGGGT--ATTATAA-TTTTCG-------TGAAGTGTTCAATGCAGTGAAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTT---------------------------------------------------------------------------------------ATA----------TCTTGGAAGA-----------------------------------AA...............................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droBip1

TACAAT--T------------------------------------------------------------------------------------------------------------------------------AAAGA--AAATTTAAAAAATAA----TAACTA---------------------------------------------------------------------------------------------TAAAAGAAAGAAAAA----------------------------------------GTTCAAAGTCCTTACGAGGATTAT-------------------------------TACTGGTATAGG---------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------TAGTACTGGTATTA------------------------------T------------T-------------------------------------------------AA---------------------------------ACGTATGCTATATTTTAC--T----------TTTTA------------------------------TACCTGGTACTCGTA------GA-CTACAAGGGTATATTGTAG-TCGTGT-------GAATGTATGTAACATAATGAAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGGTCC--A----------------------------------------------TCTCCCCTAAGAAGTAAGAAGG---AAAGA-----------------------------------------------------------------------------------AAAATTAGTTGACTGG---------------------------------------------------T-------------T----AT----------------------------ATA-------TTTATATATGGAAAGTTAAAT-------A----------------TTCATTGAATTATTTATTTTGCTTCCTTTTA-----------------------------------------------TTTAAATATTTATTTTTTGTTATTTATTTATTTATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTA---TT-TATTTATTTA------------------------------TTTTTGGTTATTATA------CC-CTTGCAGGGTATTATAGTT-TCAGTC-------AGAAGTTTGCAACGCAGTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAAAT--GTTCGA-----------------------------------------------------------------------A-----------------------AATCAAACATTTTTCATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAAATTTTTTTTA-------------------------------------------------------------------------------------A----------------------------------CTTTTAGAAAATCTATTGACTACATTTGAGCACCTTCTTAACAA----------------------------------------------------ACTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG----------TG------------ACAAAC--T----------TTTTA------------------------------TACCC-----TTGCA------GA-GCAAAAGGGTATTATAATT-TCAGTC-------AGAAATTTGCAACGCAGTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCTTTT--G---------------------------------------------------------------GAG---TTGCTATA-----------------------C-----------------C-ATAACCTTAAA--AAAGTTTAAAAATACATTCTAAATT---------------------------------------------------------------------------------------------TAAAAGATATAA--TTAG-------------------------------------------------------------------------------------------------------------------------------------------ACAT------------------------------------------------------------------------------------------------------------------GGTATTTAAGGTTTTGTTTTGTTTGTAGCTTAACAAATCTGTAATTA----------------TAAAACTAAAATTA------------------------------T------------T--ACAT-----AAA----------------------------------------------------------------------ATAAATATT---TTATAA---AAC-GACCATATTTA------------------------------TACCCGTTACTCGTA------GA-GTAAAAGGGTATATTGTAT-TCGTTG-------GAAAGTATGTAAAAGGTAGAAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTACAA--GTTCAA------------------------------------------------------------------AAA----------------------------------------------------------------------ATAC----TAATTA------------TTTAG----------------------TTCGCTAT------------AA-ACAATGT-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACATTAAAGGACATCATTTATACTCTGGTCAGAACAACATTTGTTACAATCTAGAT---TTTATGTATCTAGGATTTTACTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------ATTATC---CA-TATTTAATTA------------------------------TACCCGTTACTCGTA------GA-GTAAAAGGGTATATTGTAT-TCGTGC-------AAAAGTATGTAACAGCTAGAAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CATGCG--A---------------------T-TTATGCA----------------------CTCAGCA--------------------------------------------------------------TATGATGAAAATGAGGT------------------------------------------------------------------------------------AGTGCGCCAAAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTGTTACGA-----------G---------------------------------------------------------------------ATCAAGGGCGAGATACAAAAATCAAGTCAATCTAAATAAA-GTACATAT----T--AAAGATAAAATAGT--------GTTTGCCTTAAAAAA----------AAGGGTGTTCATTTATTGTTGTAATTA----------AAGCTAT---TTTCAG--T----------TATTT------------------------------TACCCGTAACTCGTA------GA-GTAAAAGGGTATACTAGAT-TCGTCA-------GAAAGTATGTAACAGGCAGAAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCTAAC--A---------------------------------------------------------------AG--T---AAAAT-----------------------------------------------------------------------------------AAAAGTCTTTGAATAA------------------------------------CT-GTTAT-TTGTTGT-------------G----GG----------------------------ATA-------TATAAAAGTCGCACGATAAAA-------G----------------TTTACTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAT-------------------------------------------------------CAACAGATTGCAT--GAAAATAAACAATT--------CTGCGTTTTTAGAAA----------AA----------------------TTC--------------------TACCTA--T----------TTTTA------------------------------TACCCGTTACTCTT-------GA-GTAAAAGGGTATATTAGAT-TCGTGC-------AAAAGTATGTAACAGCTAGAAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTGATC--G-----------------------------------------GACCATGTCTTCTTAGTAGAAGATA---AAGGGGTAATATTTGATGTGAATCGTTCGAAGGATTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGT--------------------------------------------------------------------------------------------------------------------------------------------TTTGC------TTTTTTAGATTTGTATTTA------------AATAGGG------------------------------------------CATTGGATTTCCT--GTAAGAGATCAAAG--------C-------------------------A-------------------------------------GC---------------AGC-GCTCCTAATTA------------------------------TACCCGTTACTCGTA------GA-GTAAAAGGGTATACTAGAT-TCGTTG-------AAAAGTATGTAACAGATAGAAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCAGAA--G---------------------------------------------------------------AAA---CAGTCGCA-----------------------A---------------------------------------------------------------------AATAA------------------------------------CTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTAATGAAAAAGGAATTCTAG--------------------------------------------------------------------------------------------------------------------------------------------------CTTCAAAGAT--TTAGATCACGAAGCAATTTA---------------------------------------------------------------------------------------ATT----------TGGTATA-CA-----------------------------------ATAGATGCT---TGACAA--T------ATATAATTA------------------------------TATCCGTTATTCGTA------GA-GTAAAAGTGCATACTAGAT-TCTTT--------GAAAGTATGTAACAGGCAGAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................TAATGAAAAAGGAATTCTAG--------------------------------------------------------------------------------------------------------------------------------------------------CTTC..............................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AATGAAAAAGGAATTCTAG--------------------------------------------------------------------------------------------------------------------------------------------------CT................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-CA-----------------------------------ATAGATGCT---TGACAA--T------......................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GA-GTAAAAGTGCATACTAGAT-...................................	25	2	3.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GA-GTAAAAGTGCATACTAGAT-TC.................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTT--------GAAAGTATGTAACAGGCAGAA.	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................G------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTAATGAAAAAGGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------TGGTATA-CA-----------------------------------ATAGATGCT---TGACAA--.............................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GA-GTAAAAGTGCATACTA.......................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------TATCCGTTATTCGTA------GA-GT.....................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GA-GTAAAAGTGCATACTAGA.....................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GA-GTAAAAGTGCATACTAG......................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GA-GTAAAAGTGCATACTAGA.....................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------GAAAGTATGTAACAGGCAGA..	22	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------GAAAGTATGTAACAGGCAGT..	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGCAGAA.	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAG	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCTGAA--T---------------------------------------------------------------AG--GGTAATTGCA-----------------------------------------------------------------------------------------------GAA--------------------------------------------------------------------------------------------------------------TTTGTATACGGAAA---------------------------------------------------------------------------------------------GAAAAAGAAA------ATAT------------------------------------------------------------------------------------------------------------------GACGTTCGTATTTCTCGTTAGTATATG-------------------------ATACTCTA---------------------------------------------------------------------------------------GCA----------ATTCCAT-TG-----------------------------------TCGAGTGCT---CTCTTG--T----------AATTA------------------------------TAACCATTACTCGTA------GA-TTGAAGGGAAATACTAGAA-TCGTTA-------AAAAATTCATAACAGGCAGAAG

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

AAAGCT--A---A-------------------------------------G-----------------------------A---------------------------------------------------AGCTATGG--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAT---------------------------GAAAGAGAAA---------ATGTATG----------------------------------------------TACACAGTGTTTTATT--------------------------------------TACTTA---------------------------------------------------------------------ATTGAGAGTA-------------------------------------ATTT-----GCTT-----TAAACAA--------------------T----------AA----------------------TCA-----------TATG-------------TATA-TATCATATGTA------------------------------TTATTATTACCCATT------GA-CTACAAGGGTATACA-G-A-TCGTTG-------AAAAGTACGTAACAGCTAGAAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TCATGTAAGCGAATGAAATATTGAAAGCAAT-------------------ATA--------------------------------------------------------------------------A-GT----------------------------------------------------------------------------------------------------GATATG-CAAAACAATATTT----------------------------------------------------------------ATTCAAAATTATTATGACG------------------------------------CGATGTTA-------------------------------------------AATATTTCAAAGGTGTTATTGATGCATTTTT--------------------------------------------------------------------TTTAAG--ATGCA----------TA-AGTTGTCATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---ACAGTC--T----------TTTTA------------------------------TACCCGTTACTCGTA------GA-GTAAAAGGGTATACTAGAT-TCGTTG-------AAAAGTATGTAACAGGCAGAAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTG-------AAAAGTATGTAACAGGCAGA..	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGAT-TCGTTG-------AAAAGTATG.............	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--T----------TTTTA------------------------------TACCCGTTACTCGTA------GA-C......................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

AAGAAA--GGAAAA------------------------------------------------------------------GAAAT----------------------------------------------------------------------A--------------A--------AGT--------CATTTAACTAATTTAATTCGCGATAATAAACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTAATGTTTACACGCTATTTTTTATTTAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-TGTT----------------------------------------TTA----------TA--AGGAG---------CT--T----------TTTTGTACCATTTCTGTTTATAATTTTTGTAATTATGCCCGTTACTCGTA------GA-GTAAAAGGGTATACTATAT-TCGTTG-------AAAAGTACGTAACAGGCAGAAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTACGTAACAGGCAGA..	20	13	0.08	1	0	0	0	0	1	0	0

dmo_1241

scaffold_6496:24085234-24085384 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads