dmo_1239

exon [dmoj_GLEANR_6015:12]; exon [dmoj_GLEANR_6015:13]; CDS [Dmoj\GI21221-cds]; CDS [Dmoj\GI21221-cds]; intron [Dmoj\GI21221-in]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CAGCGGTGGAGGCGATGGCAACGGCGATGGCGATGGCAATGGAAAATGCGGTAAGAGGGTCAATAGCGTAGCAACAATGAATTCAAACTCAAATTCCAAATATGCCCAACACATGCCGGAACAACAACAACAACTGCAACAACTTAACGTTTCAAATGCCAATTTAAAAATGTTTTTTAACTACGCTGATGCTCAATGATCCTTGTTCATCGTCGCTAGACAGGGACACAGGATTCACAACGGAAAATGTAACCACAAATACACAAACC ************************************************....((((((((.((((((((......(((........)))..((((...((((.......))))..))))........................(((((((.((((....))))..)))))))......))))))))........))))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
......................................................................................................................................................................................................................................GGATTCACAACGGAAAATGT...................	20	0	1	2.00	2	2	0
......................................................GAGGGTCAATAGCGTAGCAACA.................................................................................................................................................................................................	22	0	1	1.00	1	0	1
...................AACACCGATGGCGAAGGCAAT.....................................................................................................................................................................................................................................	21	3	4	0.50	2	0	2
..................................GACAATGGGAAATGCGGT.........................................................................................................................................................................................................................	18	2	13	0.08	1	0	1
..............................................................................................................................................................................CTGTAACTACGCTGAGGCT............................................................................	19	3	20	0.05	1	0	1
.................................................................................................................TGACGGATCAACAAGAACAA........................................................................................................................................	20	3	20	0.05	1	1	0

GTCGCCACCTCCGCTACCGTTGCCGCTACCGCTACCGTTACCTTTTACGCCATTCTCCCAGTTATCGCATCGTTGTTACTTAAGTTTGAGTTTAAGGTTTATACGGGTTGTGTACGGCCTTGTTGTTGTTGTTGACGTTGTTGAATTGCAAAGTTTACGGTTAAATTTTTACAAAAAATTGATGCGACTACGAGTTACTAGGAACAAGTAGCAGCGATCTGTCCCTGTGTCCTAAGTGTTGCCTTTTACATTGGTGTTTATGTGTTTGG ************************************************....((((((((.((((((((......(((........)))..((((...((((.......))))..))))........................(((((((.((((....))))..)))))))......))))))))........))))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
............................................................................................................TGCGCACGGCCTTGGTGTT..............................................................................................................................................	19	3	12	1.08	13	9	4
.......................................................................................................CGGGCTGGGTACGGCCTTCT..................................................................................................................................................	20	3	5	0.20	1	1	0
...........................................................................................................GTGCGTACGGCCTTGGTGTT..............................................................................................................................................	20	3	5	0.20	1	0	1
.................................................................................................................ACTGCCTAGTTGTTCTTGTT........................................................................................................................................	20	3	20	0.10	2	1	1
................................................................TGGCATCGTTGTTACTGTAG.........................................................................................................................................................................................	20	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:23971008-23971276 +	dmo_1239	CA--GCGGTGGAGGCGA------------------------------T------GGCA---------------------------------ACGGCGATGGCGATGGCAATGGAAAATGCGGTAAGAGGGTCAATAGCGTAGCA---ACAATGAATTCAAACTCAAATTCCAAATATGCCCAACACATGCCGGAACAACAACAACAAC-----------------T---------GCAACAACTTAACGT---TTCAAATGCCAAT-TTAAAAATGTTT-TTTAACTACGCTGATGCTCAATGATCCTT------GTTCATCGTCGCT------------------AGACAGGGACACAGGATTCACAACGGAAAATGTAACCACA------------AATACACAAA-----CC
droVir3	scaffold_12875:6070612-6070889 -	dvi_5412	CA--ATATCGATGTCGA-------------------------------------------CGT--------------------------CGATGGCGATGGCGATGGCGATGGAAAATGCGGTAAGAGGGTCAATAGCCTAGCA---ACAATGAATTCAAACTCAAATTCCACATATGCCCAACACATGCC-----------------GCAACAACATCAACAACAACGACAACTACAACAACAAAATGT---TCCAAATGTCAAT-TTTAAAATGCCT-TATAACGACGCTGATGCGCAATGATCCTT------GTTTACCGTCGTT------------------AGACAGGGACATTGGATTCAAAACGGAAATATTAGACACA------------GATTTAAAAG-----TC
droGri2	scaffold_15112:972522-972779 -		CG--ATG---------------------------------------TCGAT----GTCGATCT--------------------------T---GGCGATGGCGG---CGATGGAAAATGCGGTAAGCGGGTCAATAGCCTTGCC---AAAATGAATTTAAACTCAAATTCCAAATATGCCCAAAACATGCCGCAACAACAACAACGAC-----------------A---------ACAACAAC------T---TTTAAATTTAAAC-TTTGAAATGTTTTTTTAACCATACCGATGCCCAATGATAT------------------------AGAAGAGCAAGCATTGGCCAAGGATACAGGATCAGAAATGGAAAACTCCGACACA------------GAAATGGATA-----CA
droWil2	scf2_1100000002399:661-908 +		AA--GCGGGCGAGGGAACGGCTGGCGCTGATAATGCAGCAGCAACAAC------AACTGCAACAATGGCAGCAACAGTTGCAGCAACAACAACAACTGCAACAATGGCAGCAGCAAGTGCAG---------CA---------------------ACAGCAACAACAACTGCAACAATGCCAGCAACAAGTG-CA--------------GCAGC---------------------------------AACA---CCAACTGCAACAA-CTGCAGCTACAA-TTG-------ATG---------------CAACAACAATTGCAGCCACAG-------------------CAACAACAACAGGAGCC------------------ACA------------GCAACATCAG-----CA
dp5	3:7948612-7948844 +		CC--ACG---------------------------------------TCGGAAACGGAGGCTGT--------------------------T---GGCTATGGCGATGG------GGAATGCGGTAAGAGCGACAATAGCCTTGCA---CGAATGAACTCAAATTCCAATTCCAACTATGCCCAACACATGTC-----------------GACGC---------------------------------ACAA---TCCGATTGATAAA-CTAAATATGCTG-TTG---TTCGATGGCGAAC-ATGATCTTT------GATTGTTGTTGTACTCACCAGAGGTAGC---AGTCAAACCTGAAGGCGCA------------------ACG------------ACAACAGCAG-----CC
droPer2	scaffold_4:1859716-1859948 +		CC--ACG---------------------------------------TCGGAAACGGAGGCTGT--------------------------T---GGCTATGGCGATGG------GGAATGCGGTAAGAGCGACAATAGCCTTGCA---CGAATGAACTCAAATTCCAATTCCAACTATGCCCAACACATGTC-----------------GACGC---------------------------------ACAA---TCCGATTGATAAA-CTAAATATGCTG-TTG---TTCGATGGCGAAC-ATGATCTTT------GATTGTTGTTGTACTCACCAGAGGTAGC---AGTCAAACCTGAAGGCGCA------------------ACG------------ACAACAGCAG-----CC
droAna3	scaffold_13266:13001328-13001579 -		CG--TCG---------------------------------------AC------TGCTGCTGA--------------------------AAGTGGCGGAGGCGATGGCAATGGGGAATGCGGTAAGAGAGTGAATAGCCTTGCA---AGATTGAACTCAAATTCCAATTCCCACCATGCCCAACGTGTGCG-----------------CACGA---------------------------------ACCC---ATCGATTGATAAA-CTAAAACAATTA-TTG---TTCGATGACGAACAATGATCGTT------GATTACTATTGTTCTTACCAGAGGGAAC---AGGCAGAGATGATGGAGACGTAGCAGGAGAAGGAG---CA------------TCAATGAAAG-----CG
droBip1	scf7180000396730:921736-921990 +		CA--GTA---T---------------------------------CGTC---GACTGCTGCTAA--------------------------AAGTGGCGGTGGCGGTGGCAATGGGGAATGCGGTAAGAGCGTGTATAGCCTTGCA---AGATTGAACTCAAATTCCAATTCCCACTATGCCCAACGTGTGCG-----------------CACGA---------------------------------ATCC---ACCGTTTGATAAA-CTAAAA---CTA-TTG---TTCGATGACGAACAATGATCCTT------GATTATTGTTGTTCTCACCAGAGGGGAC---AGGCAAAGATGATGGAGACCCAACAGGAGAAGGAG---CA------------TCAATTAAAG-----CG
droKik1	scf7180000302476:1142326-1142523 +		CA--ACG---------------------------------------GC------GGCTGCTGC--------------------------A---------------GGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---AGAATGAACTCAAATTCCCATTTCAACTCTGCCCGACACGAACTGCA--------------TACGC---------------------------------ATCCCACTTTAATTGATTAACCTA-----------TA---TTTGATGACCAACAATGATC-----------------------TTAGCAGAGCTGGGAGGAAACCAGGATGATGGAACTGCAGC---------------------------------GCCACCAAAAAG
droFic1	scf7180000454066:902053-902303 -		GG---CTGAGAGGATGA---------------------------CAAC------TGATGCTTC--------------------------A---GGCAATAGCGTTGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---AGATTGAACTCAAATTCCCATTCCAACTATGCCCAAAATACGCC-----------------AACGC---------------------------------GCAA---TTCAATTGATAAA-CTAAACACGCTG-TTG---TTCGATGACGAACAATGATCGTT------GACTGTTGTTGTTCTCACCAGAAGGAGC---GGGCACCGATGATGGATCG------TCAA---------TAAAAATGGAATCGGCAATGCCAG-----AG
droEle1	scf7180000491201:226836-226909 +		CG--ACG------------------------------------------------GCTGACTC--------------------------AGAAGGCAATGGCGGTGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCAACAAGATTGAACTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777760:26681-26905 +		TA--GCG---------------------------------------TC------GGCTGCCTT--------------------------AGCTAGCAATGGCGGTGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---AGATTGAACTCAAATTCCCATTCCAACTATGCCCAA--------------------------ACGC---------------------------------ACCA---TTCGATTGATAAA-CTAAAATCGCGC-------TCTGATAACGAACAATGATCGTTGTTGATGATTGTTGTTGTTCTCACCAGAAGGAGC---AGGCAGAGAAGATGGAGCA------GCAA---------GAAA------------AATGGAAT-----CG
droBia1	scf7180000301506:498548-498789 +		TGGGGCTGAGGGGATGA---------------------------CAGC------GGCGGCTTC--------------------------A---GGCAATGGCTGTGGCAAT---------GGTAAGAGCCTAGATAGCCTTGCA---AGAATGAACTCAAATTCCCATTCCAACTATGCCCAAAACACGCC-----------------AACAC---------------------------------ACAA---TTCGATTGATAAT-CCAAAAACGCCA-TTG---TTCAACGATGTGCAATGATCGTT------GACTGTTGTTGTCCTCACCAGAAGAAGC---TGGCAAAGATGATGGATCG------GGAA---------TAAA------------AATGGAAC-----CG
droTak1	scf7180000415870:15903-16147 +		GG---CTGAGAGGATGA---------------------------CAAC------GGCGGCTTC--------------------------A---GGCAATGGCGGTGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---AGAAAGAACTCAAATTCCCATTCCAACTATGCCCAACACACGCC-----------------AACAA---------------------------------ACCA---TTCGATTGATAAA-CTAAAAACGCTG-TTG---TTCGACGATGAACAATGATCGTT------GATTGTTGTTGTTCTCACCAGAAGCAGC---AGGCAAAGATGAAGGATCA------GGAAAGAGTG---GAAA------------AATGGATG-----CG
droEug1	scf7180000409672:4233133-4233383 -		GG---CTGAGAAGATGA---------------------------CAAC------GGATGCTTC--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTAAATAGCCCTGCA---CGAATGAACTCACAATCCCATTCCAACTATGCCCAAAACATGCC-----------------ATCGC---------------------------------AATA---TACGATTGATAAA-CTAAAAACGCTG-TTC---TTTAACGATGAACAATGATCGTT------GATTGTCGTTGTACTCACCAGAAATAAC---AGGCAAGGATGATGGATCA------GGAG---------ATAAATTGGAAGCGATGGTGCCAG-----AA
dm3	chr2R:6778720-6778938 +		GG--GCTGAAAAGATGA------------------------------C------GGAAGCTTT--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---CTAATCAAATCAAATTCCCATTTCAACTATGCCCAAAACACGCC-----------------AACGC---------------------------------ATAA---TACAAATGATAAT-CTAAAAACGCTG-TTG---TTCGGCGACGAACAATGATCGTC------GATTGTTGTTGTACTCACCAGAAGAAGG---CGGCACAGATGATGGAACA--------------------------------------------------
droSim2	2r:7518902-7519111 +	dsi_23554	GG--GCGGAAAAGATGA------------------------------C------GGAAGCTTT--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---CCAATCAAATCAAATTCCCATTTCAACTGTGCCCAAAATACGCC-----------------AACGC---------------------------------ATAA---TACAAATGATAAT-CTAAAAACGCTG-TTG---TTCGGCGACGAACAATGATCGTC------GATTGTTGTTGTACTCACCAGAAGAAGC---CGGCACAGAT-----------------------------------------------------------
droSec2	scaffold_1:4365718-4365936 +		GG--GCGGAAAAGATGA------------------------------C------GGAAGCTTT--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---CCAATCAAATCAAATTCCCATTTCAACTGTGCCCAAAATACGCC-----------------AACGC---------------------------------ATAA---TACAAATGATAAT-CTAAAAACGCTG-TTG---TTCGGCGACGAACAATGATCGTC------GATTGTTGTTGTACTCACCAGAAGAAGC---CGGCACAGATGATGGATCA--------------------------------------------------
droYak3	2R:2350034-2350254 -		GG--GCTGAGAAGATGA---------------------------CGAC------GGCTGCTTT--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTCAGTAGCCTTGCA---CGAATCAACTCAAATTCCCATTCCAACTATGCCCAACACACGCC-----------------AACGC---------------------------------ATAA---TTCAAAAGATAAT-CTAAAAACGCTG-TTG---TTCGGCGACGAACAATGATCGTT------GATTGTTGTTGTACTCACCAGAAGTAGC---CGGCAAAGATGATGGATC---------------------------------------------------
droEre2	scaffold_4845:18996113-18996364 -		GG--GCTGAGAAGATGA---------------------------CGAC------GGCTGCTTT--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTCAGTAGCCTTGCA---CGAATCAACTCAAATTTCCATTCCAACTATGCCCAACACACGCC-----------------AACGC---------------------------------ATAA---TTCAAAAGATAAT-CTAAAAACGCTG-TTG---TTCGGCGACGAACAATGATCGTT------GATTGTTGTTGTACTCACCAGAAGTAGC---CGGCAATGATGATGGATCA------GGAG---------AAAAAGCGGAACCGGCGATGCCAG-----AG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CA--GCGGTGGAGGCGA------------------------------T------GGCA---------------------------------ACGGCGATGGCGATGGCAATGGAAAATGCGGTAAGAGGGTCAATAGCGTAGCA---ACAATGAATTCAAACTCAAATTCCAAATATGCCCAACACATGCCGGAACAACAACAACAAC-----------------T---------GCAACAACTTAACGT---TTCAAATGCCAAT-TTAAAAATGTTT-TTTAACTACGCTGATGCTCAATGATCCTT------GTTCATCGTCGCT------------------AGACAGGGACACAGGATTCACAACGGAAAATGTAACCACA------------AATACACAAA-----CC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................GGATTCACAACGGAAAATGT....................................	20	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................GAGGGTCAATAGCGTAGCA---ACA.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droVir3

CA--ATATCGATGTCGA-------------------------------------------CGT--------------------------CGATGGCGATGGCGATGGCGATGGAAAATGCGGTAAGAGGGTCAATAGCCTAGCA---ACAATGAATTCAAACTCAAATTCCACATATGCCCAACACATGCC-----------------GCAACAACATCAACAACAACGACAACTACAACAACAAAATGT---TCCAAATGTCAAT-TTTAAAATGCCT-TATAACGACGCTGATGCGCAATGATCCTT------GTTTACCGTCGTT------------------AGACAGGGACATTGGATTCAAAACGGAAATATTAGACACA------------GATTTAAAAG-----TC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............GTCGA-------------------------------------------CGT--------------------------CGATGGCGATGGCG........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GATGGCGATGGCGATGGAAAA..........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TCAAT-TTTAAAATGCCT-TA.....................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GA-------------------------------------------CGT--------------------------CGATGGCGATGGC.........................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

CG--ATG---------------------------------------TCGAT----GTCGATCT--------------------------T---GGCGATGGCGG---CGATGGAAAATGCGGTAAGCGGGTCAATAGCCTTGCC---AAAATGAATTTAAACTCAAATTCCAAATATGCCCAAAACATGCCGCAACAACAACAACGAC-----------------A---------ACAACAAC------T---TTTAAATTTAAAC-TTTGAAATGTTTTTTTAACCATACCGATGCCCAATGATAT------------------------AGAAGAGCAAGCATTGGCCAAGGATACAGGATCAGAAATGGAAAACTCCGACACA------------GAAATGGATA-----CA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AA--GCGGGCGAGGGAACGGCTGGCGCTGATAATGCAGCAGCAACAAC------AACTGCAACAATGGCAGCAACAGTTGCAGCAACAACAACAACTGCAACAATGGCAGCAGCAAGTGCAG---------CA---------------------ACAGCAACAACAACTGCAACAATGCCAGCAACAAGTG-CA--------------GCAGC---------------------------------AACA---CCAACTGCAACAA-CTGCAGCTACAA-TTG-------ATG---------------CAACAACAATTGCAGCCACAG-------------------CAACAACAACAGGAGCC------------------ACA------------GCAACATCAG-----CA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................TGATAATGCAGCAGCAACAAC------AAC......................................................................................................................................................................................................................................................................................................................................................................	24	7	4.43	31	0	31	0	0	0
.......................................................................................................................................................................................AACAAGTG-CA--------------GCAGC---------------------------------AACA---CCAAC.............................................................................................................................................................	24	1	4.00	4	0	4	0	0	0
.......................................................................................................................................................................................AACAAGTG-CA--------------GCAGC---------------------------------AACA---CCAACT............................................................................................................................................................	25	1	3.00	3	0	3	0	0	0
...........................TGATAATGCAGCAGCAACAAC------AACTG....................................................................................................................................................................................................................................................................................................................................................................	26	7	2.86	20	0	20	0	0	0
.....................................................................................................................................................................................................................................................................................AA-TTG-------ATG---------------CAACAACAATTGCAGC...........................................................................................	24	13	2.69	35	0	35	0	0	0
...........................TGATAATGCAGCAGCAACAAC------AACT.....................................................................................................................................................................................................................................................................................................................................................................	25	7	2.14	15	0	14	0	1	0
........................................................................................................................................................................................ACAAGTG-CA--------------GCAGC---------------------------------AACA---CCAACTG...........................................................................................................................................................	25	1	2.00	2	0	2	0	0	0
.......................................................................................................................................................................................AACAAGTG-CA--------------GCAGC---------------------------------AACA---CCAA..............................................................................................................................................................	23	1	2.00	2	0	2	0	0	0
....GCGGGCGAGGGAACGGCTGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................	22	6	1.67	10	0	10	0	0	0
.......GGCGAGGGAACGGCTGGCGCTGA.................................................................................................................................................................................................................................................................................................................................................................................................	23	6	1.50	9	0	9	0	0	0
...........................TGATAATGCAGCAGCAACAAC------AA.......................................................................................................................................................................................................................................................................................................................................................................	23	7	1.43	10	0	10	0	0	0
...............................................................................................................AGCAAGTGCAG---------CA---------------------ACAGCAACA............................................................................................................................................................................................................................................................	22	7	1.14	8	0	8	0	0	0
......................................................................................................................................................................................CAACAAGTG-CA--------------GCAGC---------------------------------AACA---CCAAC.............................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AG-------------------CAACAACAACAGGAGCC------------------ACA------------GCAA.............	26	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................TGCAGCCACAG-------------------CAACAACAACAGGAGC...................................................	27	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................AG-------------------CAACAACAACAGGAGCC------------------ACA------------GCA..............	25	1	1.00	1	0	1	0	0	0
....GCGGGCGAGGGAACGGCTGG.......................................................................................................................................................................................................................................................................................................................................................................................................	20	6	1.00	6	0	6	0	0	0
.......................................................................................................................................................................................AACAAGTG-CA--------------GCAGC---------------------------------AACA---CCA...............................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................AAGTG-CA--------------GCAGC---------------------------------AACA---CCAAC.............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................AACAAGTG-CA--------------GCAGC---------------------------------AACA---CCAACTGCAA........................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................ACAACAACAGGAGCC------------------ACA------------GCAACA...........	24	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGGAGCC------------------ACA------------.................	20	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................CAAGTG-CA--------------GCAGC---------------------------------AACA---CCAA..............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................AACAAGTG-CA--------------GCAGC---------------------------------AACA---CCAACTG...........................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...........................TGATAATGCAGCAGCAACAAC------A........................................................................................................................................................................................................................................................................................................................................................................	22	7	1.00	7	0	7	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AACAACAACAGGAGCC------------------ACA------------G................	20	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AACAACAGGAGCC------------------ACA------------GCAACATCA........	25	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................ACAGGAGCC------------------ACA------------GCAACATCAG-----..	22	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGGAGCC------------------ACA------------GCAACA...........	26	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................AACAAGTG-CA--------------GCAGC---------------------------------AACA---CCAACTGCA.........................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AG-------------------CAACAACAACAGGAGCC------------------ACA------------GCAAA............	27	1	1.00	1	0	1	0	0	0
...............................................................................................................AGCAAGTGCAG---------CA---------------------ACAGCAACAACA.........................................................................................................................................................................................................................................................	25	7	0.86	6	0	6	0	0	0
AA--GCGGGCGAGGGAACGGCTGG.......................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.83	5	0	5	0	0	0
.......GGCGAGGGAACGGCTGGCGCTG..................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.83	5	0	5	0	0	0
.................................................................TGGCAGCAACAGTTGCAGCAACAACA....................................................................................................................................................................................................................................................................................................................................	26	7	0.71	5	0	2	0	3	0
.....................................................................................................................................................................................................................................................................................AA-TTG-------ATG---------------CAACAACAATTGCAGCC..........................................................................................	25	13	0.69	9	0	9	0	0	0
................................................................................................TGCAACAATGGCAGCAGCAAGTGCAG---------............................................................................................................................................................................................................................................................................................	26	8	0.63	5	0	2	0	3	0
...................................................................................................AACAATGGCAGCAGCAAGTGCAG---------............................................................................................................................................................................................................................................................................................	23	8	0.63	5	0	5	0	0	0
...............................................................................................................AGCAAGTGCAG---------CA---------------------ACAGCAACAA...........................................................................................................................................................................................................................................................	23	7	0.57	4	0	4	0	0	0
.....................................................................................................................................................................................................................................................................................AA-TTG-------ATG---------------CAACAACAATTGCAGCCA.........................................................................................	26	13	0.54	7	0	7	0	0	0
.....................................................................................................................................................................................................................................................................................AA-TTG-------ATG---------------CAACAACAATTGCAG............................................................................................	23	13	0.54	7	0	7	0	0	0
....GCGGGCGAGGGAACGGCTGGCGCTG..................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.50	3	0	3	0	0	0
......GGGCGAGGGAACGGCTGGCGCTGA.................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.50	3	0	3	0	0	0
.......................................AGCAACAAC------AACTGCAACAATGGC..........................................................................................................................................................................................................................................................................................................................................................	24	6	0.50	3	0	3	0	0	0
.......................................AGCAACAAC------AACTGCAACAATGG...........................................................................................................................................................................................................................................................................................................................................................	23	6	0.50	3	0	3	0	0	0
....GCGGGCGAGGGAACGGCTGGCGCT...................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.50	3	0	3	0	0	0
....GCGGGCGAGGGAACGGCTGGCGC....................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.50	3	0	3	0	0	0
......GGGCGAGGGAACGGCTGGCGC....................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.50	3	0	3	0	0	0
......................................................................................................................................................................................................................................................................................A-TTG-------ATG---------------CAACAACAATTGCAGC...........................................................................................	23	13	0.38	5	0	5	0	0	0
................................................................................................TGCAACAATGGCAGCAGCAAGTGCAG---------CA---------------------.....................................................................................................................................................................................................................................................................	28	8	0.38	3	0	0	0	3	0
..................................................................................................CAACAATGGCAGCAGCAAGTG........................................................................................................................................................................................................................................................................................................	21	8	0.38	3	0	0	0	3	0
AA--GCGGGCGAGGGAACGG...........................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.38	3	0	3	0	0	0
...................................................................................................AACAATGGCAGCAGCAAGTG........................................................................................................................................................................................................................................................................................................	20	8	0.38	3	0	0	1	2	0
.........CGAGGGAACGGCTGGCGCTGATA...............................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.33	2	0	2	0	0	0
....GCGGGCGAGGGAACGGCTG........................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.33	2	0	2	0	0	0
.....CGGGCGAGGGAACGGCTGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.33	2	0	2	0	0	0
....GCGGGCGAGGGAACGGCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.33	2	0	2	0	0	0
.........CGAGGGAACGGCTGGCGC....................................................................................................................................................................................................................................................................................................................................................................................................	18	6	0.33	2	0	2	0	0	0
.....CGGGCGAGGGAACGGCTGGCGCT...................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.33	2	0	2	0	0	0
...............................................................................................................AGCAAGTGCAG---------CA---------------------ACAGCA...............................................................................................................................................................................................................................................................	19	7	0.29	2	0	1	0	1	0
.........................................................TGCAACAATGGCAGCAACAGTTG...............................................................................................................................................................................................................................................................................................................................................	23	7	0.29	2	0	1	0	1	0
............................GATAATGCAGCAGCAACAAC------AACTG....................................................................................................................................................................................................................................................................................................................................................................	25	7	0.29	2	0	2	0	0	0
...............................................................................................................AGCAAGTGCAG---------CA---------------------ACAGCAACAAC..........................................................................................................................................................................................................................................................	24	7	0.29	2	0	2	0	0	0
............................GATAATGCAGCAGCAACAAC------AAC......................................................................................................................................................................................................................................................................................................................................................................	23	7	0.29	2	0	2	0	0	0
...........................................................................................................................................................................AACAATGCCAGCAACAAGTG-CA--------------GC.............................................................................................................................................................................................................	24	7	0.29	2	0	2	0	0	0
............................GATAATGCAGCAGCAACAAC------AACT.....................................................................................................................................................................................................................................................................................................................................................................	24	7	0.29	2	0	2	0	0	0
................................................................................................TGCAACAATGGCAGCAGCAAGTGCAG---------C...........................................................................................................................................................................................................................................................................................	27	8	0.25	2	0	2	0	0	0
......................................................................................................................................................................................................................................................................................A-TTG-------ATG---------------CAACAACAATTGCAGCCA.........................................................................................	25	13	0.23	3	0	3	0	0	0
......................................................................................................................................................................................................................................................................................A-TTG-------ATG---------------CAACAACAATTGCAG............................................................................................	22	13	0.23	3	0	3	0	0	0
.....................................................................................................................................................................................................................................................................................AA-TTG-------ATG---------------CAACAACAATTGCA.............................................................................................	22	13	0.23	3	0	3	0	0	0
........................................GCAACAAC------AACTGCAACAATGGC..........................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0
.......GGCGAGGGAACGGCTGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0
.......................................AGCAACAAC------AACTGCAACAATGGCA.........................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0
............GGGAACGGCTGGCGCTGATAATG............................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0
.....................................GCAGCAACAAC------AACTGCAACAATGG...........................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0
...........AGGGAACGGCTGGCGCTGATAATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0
.....CGGGCGAGGGAACGGCTGGCGCTG..................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0
........GCGAGGGAACGGCTGGCGCTG..................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0
.A--GCGGGCGAGGGAACGGCTG........................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0
..............GAACGGCTGGCGCTGATAATGCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0
..........GAGGGAACGGCTGGCGCTGAT................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0
....GCGGGCGAGGGAACGGCTA........................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	1	0
......GGGCGAGGGAACGGCTGGCGCTG..................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0
...............AACGGCTGGCGCTGATAATGCAGC........................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0
....GCGGGCGAGGGAACGGCTGGCGCTGA.................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0
.....CGGGCGAGGGAACGGCTGGCGC....................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0
.........CGAGGGAACGGCTGGCGCTGATAA..............................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0
.............GGAACGGCTGGCGCTGATAATGC...........................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0
............GGGAACGGCTGGCGCTGATAATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0
..............GAACGGCTGGCGCTGATAATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0
......GGGCGAGGGAACGGCTGGCGCT...................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................TG-------ATG---------------CAACAACAATTGCAGC...........................................................................................	21	13	0.15	2	0	2	0	0	0
...............................................................................................................AGCAAGTGCAG---------CA---------------------ACAGCAAC.............................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0
...............................................................AATGGCAGCAACAGTTGCAGCAACA.......................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0
................................................................................................................................................................................TGCCAGCAACAAGTG-CA--------------GCAGC---------------------------------AACA---..................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0
................................ATGCAGCAGCAACAAC------AACTG....................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0
...........................TGATAATGCAGCAGCAACAAC------AACTA....................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0
............................................................................................................................................................AGCAACAACAACTGCAACAATGC............................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0
..............................................................................................................CAGCAAGTGCAG---------CA---------------------ACAGCAACAA...........................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	1	0
...........................TGATAATGCAGCAGCAACAAC------.........................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0
..............................................................................................................................................................................AATGCCAGCAACAAGTG-C..............................................................................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0
..................................................................................................................................................................AACAACTGCAACAATGCCAGCAACAAG..................................................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0
..................................................................GGCAGCAACAGTTGCAGCAACAACA....................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0
............................GATAATGCAGCAGCAACAAC------A........................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0
................................................................................................................GCAAGTGCAG---------CA---------------------ACAGCAACAACA.........................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0
........................................................................................................................................................................TGCAACAATGCCAGCAACAAGTG-CA--------------GC.............................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0
.................................................................................................................................................................CAACAACTGCAACAATGCCAGCAACAAG..................................................................................................................................................................................................................................	28	7	0.14	1	0	1	0	0	0
...........................TGATAATGCAGCAGCAACAA................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	1	0	0	0
..................................................................................................................................................................AACAACTGCAACAATGCCAGCAAC.....................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0
...............................AATGCAGCAGCAACAAC------AACT.....................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0
...............................................................AATGGCAGCAACAGTTGCAGC...........................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0
...............................................................................................................AGCAAGTGCAG---------CA---------------------ACAGC................................................................................................................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0
...........................TGATAATGCAGCAGCAACAAC------AACTGC...................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0
........................................................................................................TGGCAGCAGCAAGTGCAG---------CA---------------------ACAGCAAA.............................................................................................................................................................................................................................................................	28	7	0.14	1	0	0	0	1	0
...............................................................................................................AGCAAGTGCAG---------CA---------------------ACAGCAACAACAAC.......................................................................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0
.......................................................................CAACAGTTGCAGCAACAACAACAACT..............................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	1	0
AA--GCGGGCGAGGGAACGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	1	0	0	0
..................................................................................................................................................................AACAACTGCAACAATGCCAGCAACAA...................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0
..............................TAATGCAGCAGCAACAAC------AACTG....................................................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0
.................................................................................................................................................................CAACAACTGCAACAATGCCAG.........................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0
.............................ATAATGCAGCAGCAACAAC------AACTG....................................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0
...........................TGATAATGCAGCAGCAACAAC------AACTGCA..................................................................................................................................................................................................................................................................................................................................................................	28	7	0.14	1	0	1	0	0	0
...............................................................................................................AGCAAGTGCAG---------CA---------------------ACAGCAAA.............................................................................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0
...................................................................................CAACAACAACAACTGCAACAATGGC...................................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0
...................................................................................................AACAATGGCAGCAGCAAGTGCAG---------CA---------------------.....................................................................................................................................................................................................................................................................	25	8	0.13	1	0	0	0	1	0
..........................................................................................AACAACTGCAACAATGGCAGCAGCAAG..........................................................................................................................................................................................................................................................................................................	27	8	0.13	1	0	0	0	1	0
...................................................................................................AACAATGGCAGCAGCAAGTGCAG---------C...........................................................................................................................................................................................................................................................................................	24	8	0.13	1	0	0	0	1	0
......................................................................................................AATGGCAGCAGCAAGTGCAG---------............................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	1	0	0	0
................................................................................CAGCAACAACAACAACTGCAACAATGG....................................................................................................................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0
....................................................................................AACAACAACAACTGCAACAATGGCAGC................................................................................................................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0
...........................................................................................ACAACTGCAACAATGGCAGCAGCAAGT.........................................................................................................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0
...................................................................................................AACAATGGCAGCAGCAAGTGC.......................................................................................................................................................................................................................................................................................................	21	8	0.13	1	0	0	0	1	0
.......................................................................................................................................................................................AACAAGTG-CA--------------GCAGC---------------------------------AAC......................................................................................................................................................................	18	9	0.11	1	0	1	0	0	0
....................................................................CAGCAACAGTTGCAGCAACA.......................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	1	0
...............................................................................................................AGCAAGTGCAG---------CA---------------------ACAGA................................................................................................................................................................................................................................................................	18	10	0.10	1	0	1	0	0	0
.......................................................................CAACAGTTGCAGCAACAACA....................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	1	0
......................................................................................................................GCAG---------CA---------------------ACAGCAACAACAACTG.....................................................................................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................GCTACAA-TTG-------ATG---------------CAACAACAATTG...............................................................................................	25	12	0.08	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................A-TTG-------ATG---------------CAACAACAATTGCAGCC..........................................................................................	24	13	0.08	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................AA-TTG-------ATG---------------CAACAACAATTGCAGCCACA.......................................................................................	28	13	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................A-TTG-------ATG---------------CAACAACAATTG...............................................................................................	19	13	0.08	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................AA-TTG-------ATG---------------CAACAACAATTGC..............................................................................................	21	13	0.08	1	0	1	0	0	0
.......................................AGCAACAAC------AACTGCAACAATG............................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................AA-TTG-------ATG---------------CAACAACAATTGCAGCA..........................................................................................	25	13	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................A-TTG-------ATG---------------CAACAACAATTGCAGCCAT........................................................................................	26	13	0.08	1	0	1	0	0	0
............................................................................................................................................................AGCAACAACAACTGCAACAATG.............................................................................................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................G-------ATG---------------CAACAACAATTGCAGC...........................................................................................	20	13	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AGGAGCC------------------ACA------------GCAACATCAG-----..	20	14	0.07	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AGGAGCC------------------ACA------------GCAACATCAG-----CA	22	14	0.07	1	0	0	0	1	0
..........................................................................................AACAACTGCAACAATGGCAGCA...............................................................................................................................................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0
.............................................AAC------AACTGCAACAATGGCAGCA......................................................................................................................................................................................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0
.........................................CAACAAC------AACTGCAACAATGG...........................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0
......................................................................................CAACAACAACTGCAACAATGG....................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0

dp5

CC--ACG---------------------------------------TCGGAAACGGAGGCTGT--------------------------T---GGCTATGGCGATGG------GGAATGCGGTAAGAGCGACAATAGCCTTGCA---CGAATGAACTCAAATTCCAATTCCAACTATGCCCAACACATGTC-----------------GACGC---------------------------------ACAA---TCCGATTGATAAA-CTAAATATGCTG-TTG---TTCGATGGCGAAC-ATGATCTTT------GATTGTTGTTGTACTCACCAGAGGTAGC---AGTCAAACCTGAAGGCGCA------------------ACG------------ACAACAGCAG-----CC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................GATGG------GGAATGCGGTAAGAGC..............................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................T---GGCTATGGCGATGG------GGAAT.........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................T--------------------------T---GGCTATGGCGATGG------GGA...........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GAAC-ATGATCTTT------GATTGTT.............................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................ATGGCGATGG------GGAATGCGA.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................A---TCCGATTGATAAA-CTAAATATGCTG-TT.....................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................TTT------GATTGTTGTTGTACTCAC..................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GATTGTTGTTGTACTCACCA................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

CC--ACG---------------------------------------TCGGAAACGGAGGCTGT--------------------------T---GGCTATGGCGATGG------GGAATGCGGTAAGAGCGACAATAGCCTTGCA---CGAATGAACTCAAATTCCAATTCCAACTATGCCCAACACATGTC-----------------GACGC---------------------------------ACAA---TCCGATTGATAAA-CTAAATATGCTG-TTG---TTCGATGGCGAAC-ATGATCTTT------GATTGTTGTTGTACTCACCAGAGGTAGC---AGTCAAACCTGAAGGCGCA------------------ACG------------ACAACAGCAG-----CC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................ATTCCAACTATGCCCAACACATGTC-----------------GACG...........................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................CTTGCA---CGAATGAACTCAAATT............................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCGATGGCGAAC-ATGATCTTT------GATTGTT.............................................................................................	28	1	1.00	1	1	0	0	0	0	0

droAna3

CG--TCG---------------------------------------AC------TGCTGCTGA--------------------------AAGTGGCGGAGGCGATGGCAATGGGGAATGCGGTAAGAGAGTGAATAGCCTTGCA---AGATTGAACTCAAATTCCAATTCCCACCATGCCCAACGTGTGCG-----------------CACGA---------------------------------ACCC---ATCGATTGATAAA-CTAAAACAATTA-TTG---TTCGATGACGAACAATGATCGTT------GATTACTATTGTTCTTACCAGAGGGAAC---AGGCAGAGATGATGGAGACGTAGCAGGAGAAGGAG---CA------------TCAATGAAAG-----CG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................................................................................................................................................................................................GACGTAGCAGGAGAAGGA...................................	18	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................GACGTAGCAGGAGAAGGAG---C..............................	20	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................ATGGAGACGTAGCAGGAGAAGGAG---C..............................	25	1	1.00	1	0	0	0	0	1	0

droBip1

CA--GTA---T---------------------------------CGTC---GACTGCTGCTAA--------------------------AAGTGGCGGTGGCGGTGGCAATGGGGAATGCGGTAAGAGCGTGTATAGCCTTGCA---AGATTGAACTCAAATTCCAATTCCCACTATGCCCAACGTGTGCG-----------------CACGA---------------------------------ATCC---ACCGTTTGATAAA-CTAAAA---CTA-TTG---TTCGATGACGAACAATGATCCTT------GATTATTGTTGTTCTCACCAGAGGGGAC---AGGCAAAGATGATGGAGACCCAACAGGAGAAGGAG---CA------------TCAATTAAAG-----CG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CA--ACG---------------------------------------GC------GGCTGCTGC--------------------------A---------------GGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---AGAATGAACTCAAATTCCCATTTCAACTCTGCCCGACACGAACTGCA--------------TACGC---------------------------------ATCCCACTTTAATTGATTAACCTA-----------TA---TTTGATGACCAACAATGATC-----------------------TTAGCAGAGCTGGGAGGAAACCAGGATGATGGAACTGCAGC---------------------------------GCCACCAAAAAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GG---CTGAGAGGATGA---------------------------CAAC------TGATGCTTC--------------------------A---GGCAATAGCGTTGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---AGATTGAACTCAAATTCCCATTCCAACTATGCCCAAAATACGCC-----------------AACGC---------------------------------GCAA---TTCAATTGATAAA-CTAAACACGCTG-TTG---TTCGATGACGAACAATGATCGTT------GACTGTTGTTGTTCTCACCAGAAGGAGC---GGGCACCGATGATGGATCG------TCAA---------TAAAAATGGAATCGGCAATGCCAG-----AG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CG--ACG------------------------------------------------GCTGACTC--------------------------AGAAGGCAATGGCGGTGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCAACAAGATTGAACTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TA--GCG---------------------------------------TC------GGCTGCCTT--------------------------AGCTAGCAATGGCGGTGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---AGATTGAACTCAAATTCCCATTCCAACTATGCCCAA--------------------------ACGC---------------------------------ACCA---TTCGATTGATAAA-CTAAAATCGCGC-------TCTGATAACGAACAATGATCGTTGTTGATGATTGTTGTTGTTCTCACCAGAAGGAGC---AGGCAGAGAAGATGGAGCA------GCAA---------GAAA------------AATGGAAT-----CG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGGGGCTGAGGGGATGA---------------------------CAGC------GGCGGCTTC--------------------------A---GGCAATGGCTGTGGCAAT---------GGTAAGAGCCTAGATAGCCTTGCA---AGAATGAACTCAAATTCCCATTCCAACTATGCCCAAAACACGCC-----------------AACAC---------------------------------ACAA---TTCGATTGATAAT-CCAAAAACGCCA-TTG---TTCAACGATGTGCAATGATCGTT------GACTGTTGTTGTCCTCACCAGAAGAAGC---TGGCAAAGATGATGGATCG------GGAA---------TAAA------------AATGGAAC-----CG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GG---CTGAGAGGATGA---------------------------CAAC------GGCGGCTTC--------------------------A---GGCAATGGCGGTGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---AGAAAGAACTCAAATTCCCATTCCAACTATGCCCAACACACGCC-----------------AACAA---------------------------------ACCA---TTCGATTGATAAA-CTAAAAACGCTG-TTG---TTCGACGATGAACAATGATCGTT------GATTGTTGTTGTTCTCACCAGAAGCAGC---AGGCAAAGATGAAGGATCA------GGAAAGAGTG---GAAA------------AATGGATG-----CG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GG---CTGAGAAGATGA---------------------------CAAC------GGATGCTTC--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTAAATAGCCCTGCA---CGAATGAACTCACAATCCCATTCCAACTATGCCCAAAACATGCC-----------------ATCGC---------------------------------AATA---TACGATTGATAAA-CTAAAAACGCTG-TTC---TTTAACGATGAACAATGATCGTT------GATTGTCGTTGTACTCACCAGAAATAAC---AGGCAAGGATGATGGATCA------GGAG---------ATAAATTGGAAGCGATGGTGCCAG-----AA	Size	Hit Count	Total Norm	Total
No Reads

dm3

GG--GCTGAAAAGATGA------------------------------C------GGAAGCTTT--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---CTAATCAAATCAAATTCCCATTTCAACTATGCCCAAAACACGCC-----------------AACGC---------------------------------ATAA---TACAAATGATAAT-CTAAAAACGCTG-TTG---TTCGGCGACGAACAATGATCGTC------GATTGTTGTTGTACTCACCAGAAGAAGG---CGGCACAGATGATGGAACA--------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............GATGA------------------------------C------GGAAGCTTT--------------------------A---GGCAATGGC.........................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AGG---CGGCACAGATGATGG......................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................ATCGTC------GATTGTTGTTGTACT.....................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AGATGA------------------------------C------GGAAGCTTT--------------------------A---GGCA..............................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACAATGATCGTC------GATTGTTGT...........................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GAAGCTTT--------------------------A---GGCAATGGCGATGGCA..................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................C------GGAAGCTTT--------------------------A---GGCAATGGCGATGGCAA.................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................C------GGAAGCTTT--------------------------A---GGCAATGGCG........................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................................AACAATGATCGTC------GATTGTTG............................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GCAATGGCGATGGCAAT---------GG.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

GG--GCGGAAAAGATGA------------------------------C------GGAAGCTTT--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTCAATAGCCTTGCA---CCAATCAAATCAAATTCCCATTTCAACTGTGCCCAAAATACGCC-----------------AACGC---------------------------------ATAA---TACAAATGATAAT-CTAAAAACGCTG-TTG---TTCGGCGACGAACAATGATCGTC------GATTGTTGTTGTACTCACCAGAAGAAGC---CGGCACAGATGATGGATCA--------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........AAGATGA------------------------------C------GGAAGCTTT--------------------------A---GGCAATGGC.........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................ATGATCGTC------GATTGTTGTTGT........................................................................................	21	1	1.00	1	1	0	0	0

droYak3

GG--GCTGAGAAGATGA---------------------------CGAC------GGCTGCTTT--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTCAGTAGCCTTGCA---CGAATCAACTCAAATTCCCATTCCAACTATGCCCAACACACGCC-----------------AACGC---------------------------------ATAA---TTCAAAAGATAAT-CTAAAAACGCTG-TTG---TTCGGCGACGAACAATGATCGTT------GATTGTTGTTGTACTCACCAGAAGTAGC---CGGCAAAGATGATGGATC---------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................GATGGCAAT---------GGTAAGAGC..............................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
GG--GCTGAGAAGATGA---------------------------CGAC------GGCT.....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAAGTAGC---CGGCAAAGATGATG.......................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GG--GCTGAGAAGATGA---------------------------CGAC------GGCTGCTTT--------------------------A---GGCAATGGCGATGGCAAT---------GGTAAGAGCCTCAGTAGCCTTGCA---CGAATCAACTCAAATTTCCATTCCAACTATGCCCAACACACGCC-----------------AACGC---------------------------------ATAA---TTCAAAAGATAAT-CTAAAAACGCTG-TTG---TTCGGCGACGAACAATGATCGTT------GATTGTTGTTGTACTCACCAGAAGTAGC---CGGCAATGATGATGGATCA------GGAG---------AAAAAGCGGAACCGGCGATGCCAG-----AG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................GATGATGGATCA------GGAG---------AAA............................	19	1	2.00	2	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................AATGATGATGGATCA------GGAG---------A..............................	20	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................GGCAAT---------GGTAAGAGCCTCAGT........................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0

dmo_1239

scaffold_6496:23971058-23971226 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.8	-23.8	-23.7