dmo_1235

CDS [Dmoj\GI18447-cds]; exon [dmoj_GLEANR_3383:5]; exon [dmoj_GLEANR_3383:6]; CDS [Dmoj\GI18447-cds]; intron [Dmoj\GI18447-in]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GACGCGCGATCCCGCCGGCCATTGAGTCGAGTAGCATGCAGCGCAGAGAGGTAAAACAAGGGTTACGATGATATTCGAAGGGGAGGGCAATACTCTACGAAATTATTATAATGTGAAGAGTTGATGGCTGATGATCTATCTTCACTCAAGAAAATATCTCTCTATCTATACGCAAAGAAACCATTGAAGTTTTTTTTACAGCTATTTGTGATGAATAATTTTAGGAACATTTGCTCCATTTACATTCGACACATAAGAAGCATAATCATAAATCAATTTCAATTTCAATTTGAACTTGGATCATCAATATCTAATTTAATTTAAATTTAATTCAGATTTCCGATATTGTTGTTGGCAAAGAGGACAACGTATCCGCACGTGAGGC ************************************************...........((((.((((((.((((.((((..........)))).)))))))))).)))).(((((((((((((..((((((((((..((((....(((.....))).....(((........)))....(((((((((..(((....(((.((((((.(((((.......(((........)))......)))))...)))))).)))........)))..))))))))).......))))..)))))))))).)))).)))))..))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V049 head
.........................................................................................ATACTCTACGAAATTATCCT....................................................................................................................................................................................................................................................................................	20	2	2	6.00	12	12	0	0
.................................................................................................................................................................................................................................................................................................................................................TTCCGATATTGTTGTTGGC.............................	19	0	1	1.00	1	1	0	0
..............................................................................................................................................................................................................................................................................................................................................GATTTCCGATATTGTTGTT................................	19	0	1	1.00	1	0	1	0
.........................................................................................ATACTCTACGAAATTATCCTC...................................................................................................................................................................................................................................................................................	21	3	5	0.60	3	3	0	0
.........................................................................................ATACTCTACGAAATTATCC.....................................................................................................................................................................................................................................................................................	19	2	2	0.50	1	1	0	0
.........................................................................................................................................ATATTCTCTCAGGAAAATATCTC.................................................................................................................................................................................................................................	23	3	2	0.50	1	0	0	1
..............................................................................................................................GCTCATGATCTATCGTCACC...............................................................................................................................................................................................................................................	20	3	4	0.25	1	1	0	0
...................................................................................................................AAGAGTTGATTACTGATTAT..........................................................................................................................................................................................................................................................	20	3	20	0.15	3	1	2	0
...................................................................................................................................................................................................................................................................................................................................................ACGATATTGGTGTTGCCAAA..........................	20	3	12	0.08	1	1	0	0

CTGCGCGCTAGGGCGGCCGGTAACTCAGCTCATCGTACGTCGCGTCTCTCCATTTTGTTCCCAATGCTACTATAAGCTTCCCCTCCCGTTATGAGATGCTTTAATAATATTACACTTCTCAACTACCGACTACTAGATAGAAGTGAGTTCTTTTATAGAGAGATAGATATGCGTTTCTTTGGTAACTTCAAAAAAAATGTCGATAAACACTACTTATTAAAATCCTTGTAAACGAGGTAAATGTAAGCTGTGTATTCTTCGTATTAGTATTTAGTTAAAGTTAAAGTTAAACTTGAACCTAGTAGTTATAGATTAAATTAAATTTAAATTAAGTCTAAAGGCTATAACAACAACCGTTTCTCCTGTTGCATAGGCGTGCACTCCG ************************************************...........((((.((((((.((((.((((..........)))).)))))))))).)))).(((((((((((((..((((((((((..((((....(((.....))).....(((........)))....(((((((((..(((....(((.((((((.(((((.......(((........)))......)))))...)))))).)))........)))..))))))))).......))))..)))))))))).)))).)))))..))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V041 embryo
.......................................................................................GCTATGAGATGCTTTAATA.......................................................................................................................................................................................................................................................................................	19	1	1	9.00	9	7	2	0
........................................................................................CTATGAGATGCTTTAATAG......................................................................................................................................................................................................................................................................................	19	2	3	6.00	18	2	16	0
.......................................................................................GCTATGAGATGCTTTAAT........................................................................................................................................................................................................................................................................................	18	1	1	3.00	3	3	0	0
........................................................................................CTATGAGATGCTTTAATAGGA....................................................................................................................................................................................................................................................................................	21	3	4	2.00	8	1	7	0
.......................................................................................GCTATGAGATGCTTTAATAG......................................................................................................................................................................................................................................................................................	20	2	2	2.00	4	1	3	0
......................................................................................GGCTATGAGATGCTTTAATA.......................................................................................................................................................................................................................................................................................	20	2	2	2.00	4	1	3	0
........................................................................................CTATGAGATGCTTTAATA.......................................................................................................................................................................................................................................................................................	18	1	1	1.00	1	1	0	0
.........................................................................................TATGAGATGCTTTAATAG......................................................................................................................................................................................................................................................................................	18	1	1	1.00	1	1	0	0
.........................................................................................TATGAGATGCTTTAATAGGA....................................................................................................................................................................................................................................................................................	20	2	2	0.50	1	1	0	0
...................................................................................................................TTCTCAACTAATGACTAATA..........................................................................................................................................................................................................................................................	20	3	20	0.45	9	9	0	0
.......................................................................................CCTATGAGATGCTTTAATA.......................................................................................................................................................................................................................................................................................	19	2	3	0.33	1	1	0	0
..........GGGCGGTGGGTATCTCAGCTC..................................................................................................................................................................................................................................................................................................................................................................	21	3	3	0.33	1	0	0	1
........................................................................................CTATGAGATGCTTTAATAGG.....................................................................................................................................................................................................................................................................................	20	3	9	0.33	3	0	3	0
..........................................................................................................................................................................................................................................................................................................................................................ACGAAAACCGTTTCTCCAGT...................	20	3	12	0.08	1	1	0	0
...........................................................................................TGAGATGCTTTAATAGGAG...................................................................................................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:23751540-23751924 -	dmo_1235	GACGCGCG---ATCCCGCCGGCCAT---TGAGTCGAGTAGCATGCAGCGCAGAGAGGTAAAA--CAAGG-GTTACGATGATATTCGAAGGGGAGGGCAATACTCTACGAAATTATTATAATGTGAAGAGTTGATGGCTGATGATCTATCTTC------ACTCAAGAAAATATCTCTCTATCTATACGCAAA-----GAAACCATT------GAAGTTTTT-----------------------TTTACAGCTATT------------TGTGATGAATAATTTTAGGAACATTTGCTCCATTTACATTCGACACATAAGAAGCATAATCATAAATCAA----T----------------------------------------------------TTCAATTTC----------------AAT------------------------------------------------------------TT-----------GAAC-------TTGGATC-----A---------TCAA-------------------------------TATCTAATTTAAT--------TTAAA---TTT---AATTCAGATTTCCGATATTGTTGTTGGCAAAGAGGACAACGTATC-CGCACGTGAGGC
droVir3	scaffold_12875:6278546-6278686 +		AAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTCCATTTACGTTCAA-----------------------------------------------------------------------------------------------------------TCTAATCATATAATTATAAATCTATA-------------------------------------------A--GCCTTTAC-TATA-------------------------------------------------------------------ACTTATCGCTCT---CTAAA---CAC---ATTCCAGATCTCCGATATTGTTGTTGGCAAAGAAGACAACGTATCCCGCACGCGAGGC
droGri2	scaffold_15112:1166283-1166637 +		GACGCGCCTTACCGCCACCGGCCATTGTTGAGTCGA---GCGTGCAGCGCAGAGAGGTAAACTGAGAGGGACAG---------------GGGAGAGGATTG---AAGAAGATTAATACGATGTGGGG--------------------------------------TCA------------------------------TCCAAATTAAAATATAAATTAAATTAGAAAATGGATTAGGCTTACTTCGCAACAGTCTTGCACCATAAATACATTGCATACCCCAAGAAAAACTTGCTCCATTTAAGTA-AA-----------------------------------------------------------------------------------------------------------CCT--TCAAGAAACTATATAT-TAAA-------------------------------------------T--GCATATAT-TAAAACAC-----------ATAGCTAACATTTAATTAATAATACT-------------------------------------------ATTCCGTTGCCCTAACTAGATCTCCGATATTGTTGTTGGCAAAGAGGACAACGTATC-CGCACGTGAGGC
droWil2	scf2_1100000004822:1416404-1416496 +		ATTTGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----A---------TAAA-------------------------------TCTTTAATTTATCG----TT---TGT---TAC---TTTTTAGATCTCCGATATTGTAATTGGCAAAGAAGACAATGTATC-CGCTCGCGAGGC
dp5	3:8069103-8069155 -		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATCTCCGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCACGTGAGGC
droPer2	scaffold_4:1982688-1982740 -		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATCTCCGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCACGTGAGGC
droAna3	scaffold_13266:17095924-17095990 -		GTCGTGCT---CTCCCCCCGGCCAT---TGAGTCAT---CCACGCACCGCAGAGAGGTAATC-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGA----------------------AGGATGA
droBip1	scf7180000396735:341785-341849 -		TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---TCT---CCTCCAGATCTCAGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCTCGGGAGGC
droKik1	scf7180000301798:122339-122391 -		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC
droFic1	scf7180000454066:1820641-1821010 +		GCCGTGCT---CTGCCGCCGGCTAT---TGAGTCGT---CCACGCAGCGCAGAGAGGTAAAAT-TAAGG-ATTTCGG--------------AAATGGTTTT---CA-AG------------------GATTGAGAACCCAAGATCAACCTTTTGATGAACTGAAATCAATCTCTTTCCCTCTTACAGCAAATGAGTGATACACTT------GTAAATTTAAT------------------------------------------------------------------------------------------------------------TAATCAAATTATTAGTTTGAAATAACTTGAACCAAACGATCACAGTTTTGCTTCACTCATAGCTTTGCTCTCCTACAACAATATAATCCT--T-------------AT-ACAT-------------------------------------------T--ACATTTTAT--------TTAATTC-----T------------------------TAACT-------------TCT-TCTTATTTATTA----ATT--ATT---CCA---TTTTCAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGTGAGGC
droEle1	scf7180000491271:127167-127469 -		GTCGTGCT---CTGCCACTGGCCAT---TGAGTCGT---CCACGCAGCACAGAGAGGTAAAA--AGCGG-ACTTCGC---------------AATGGGTAG---AA-AA------------------GATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCACAGTTTTGCTCAATTTTTAGCTTAGCTCAA---------------TCTCAACAGA---ACATAAATCGGGAAACTGTAGACTCCCCCCATTTTAAGCTCCACGCATTCAAAAAATGCGCTT-------------CT-----AAACAT-------------AACTTTTAACTTTACATATCCACTAACAT--TA----TCTTTAC--------TTCCA---CCT---CCAAAAGATCTCCGATATTGTTGTGGGCAAGGAAGACAACGTATC-CGCTCGGGAGGC
droRho1	scf7180000779816:45354-45417 +		GCCGTGCT---CTGCCACCGTCCAT---TGAGTCGT---CCACTCAGCGCAGAGAGGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCGGACTTCG-----------------
droBia1	scf7180000302291:339500-339570 +		ACTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT--------------------------------------TTA---TCA---CACGCAGATCTCCGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCTCGGGAGGC
droTak1	scf7180000415401:839133-839259 +		TAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAATCAA----T----------------------------------------------------TTTCGTATC----------------TAA------------------------------------------------------------TA-----------GATC-------TT-----G-ACCT--------TTTTATACTTAATACTAAACT--------------------------------------TCA---TTTCCCATAACAGATCTCCGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCTCGGGAGGC
droEug1	scf7180000409462:3059286-3059396 +		ATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTC----------------TAA------------------------------------------------------------TA----------AGAT--------TTAAGTC-----C----------TAA--------------TC-------------ACTTACTAATTTCTTA----ATT--A-------A---TTCACAGATCTCCGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCTCGGGAGGC
dm3	chr2R:9792957-9793046 -		AATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCT-------------TACTTATTACTTAACT--------------------------------------TTA---TCC---TGCTCAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC
droSim2	2r:10482316-10482405 -		AATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----AAACCT-------------TACTTATTACTTAACT--------------------------------------TAA---TCA---TGCACAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC
droSec2	scaffold_1:7319857-7319948 -		ATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-----AAACCT-------------TACTTATTACTTAACT--------------------------------------TAA---TCA---TGCACAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC
droYak3	2R:7160726-7160828 +		TTTCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------GAAT-------TC-----AAACTC----------TTATACTTATTACTCAACT--------------------------------------TCA---TTT---TGCGCAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC
droEre2	scaffold_4845:16026710-16026833 +		CAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCAATGCAT----------------------------------------------------TTCCTTTTC----------------TA-------------------------------------------------------------TA-----------GAAT-------TT-----GAACCC----------TTATACTTATTACTTAACT--------------------------------------AAA---TTA---TGTGCAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GACGCGCG---ATCCCGCCGGCCAT---TGAGTCGAGTAGCATGCAGCGCAGAGAGGTAAAA--CAAGG-GTTACGATGATATTCGAAGGGGAGGGCAATACTCTACGAAATTATTATAATGTGAAGAGTTGATGGCTGATGATCTATCTTC------ACTCAAGAAAATATCTCTCTATCTATACGCAAA-----GAAACCATT------GAAGTTTTT-----------------------TTTACAGCTATT------------TGTGATGAATAATTTTAGGAACATTTGCTCCATTTACATTCGACACATAAGAAGCATAATCATAAATCAA----T----------------------------------------------------TTCAATTTC----------------AAT------------------------------------------------------------TT-----------GAAC-------TTGGATC-----A---------TCAA-------------------------------TATCTAATTTAAT--------TTAAA---TTT---AATTCAGATTTCCGATATTGTTGTTGGCAAAGAGGACAACGTATC-CGCACGTGAGGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGATATTGTTGTTGGC..............................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCCGATATTGTTGTT.................................	19	1	1.00	1	0	0	0	0	0	1
..................................................................................................ATACTCTACGAAATTATCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0

droVir3

AAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTCCATTTACGTTCAA-----------------------------------------------------------------------------------------------------------TCTAATCATATAATTATAAATCTATA-------------------------------------------A--GCCTTTAC-TATA-------------------------------------------------------------------ACTTATCGCTCT---CTAAA---CAC---ATTCCAGATCTCCGATATTGTTGTTGGCAAAGAAGACAACGTATCCCGCACGCGAGGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCCGATATTGTTG...................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATCTCCGATATTGTTGTT.................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGATATTGTTGTTGGCA.............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGATCTCCGATATTGT.....................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCT---CTAAA---CAC---ATTCCAG...................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GACGCGCCTTACCGCCACCGGCCATTGTTGAGTCGA---GCGTGCAGCGCAGAGAGGTAAACTGAGAGGGACAG---------------GGGAGAGGATTG---AAGAAGATTAATACGATGTGGGG--------------------------------------TCA------------------------------TCCAAATTAAAATATAAATTAAATTAGAAAATGGATTAGGCTTACTTCGCAACAGTCTTGCACCATAAATACATTGCATACCCCAAGAAAAACTTGCTCCATTTAAGTA-AA-----------------------------------------------------------------------------------------------------------CCT--TCAAGAAACTATATAT-TAAA-------------------------------------------T--GCATATAT-TAAAACAC-----------ATAGCTAACATTTAATTAATAATACT-------------------------------------------ATTCCGTTGCCCTAACTAGATCTCCGATATTGTTGTTGGCAAAGAGGACAACGTATC-CGCACGTGAGGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

ATTTGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----A---------TAAA-------------------------------TCTTTAATTTATCG----TT---TGT---TAC---TTTTTAGATCTCCGATATTGTAATTGGCAAAGAAGACAATGTATC-CGCTCGCGAGGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAATTGGCAAAGAAGACAAT..................	24	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTTTTAGATCTCCGATATTGT.....................................	22	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGGCAAAGAAGACAAT..................	21	1	1.00	1	0	0	1	0	0

dp5

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATCTCCGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCACGTGAGGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCAAGGAGGACAAC..................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCAAGGAGGACAACGT................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGTTGTGGGCAAGGAGG.......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATATTGTTGTGGGC..............................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGGCAAGGAGGACAA...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCAAGGAGGACAACGTATC-CGCA........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGGCAAGGAGGACAACGT................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGATATTGTTGTGGGC..............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTTGTGGGCAAGGAGGACAAC..................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAACGTATC-CGCACGTGAGG.	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATCTCCGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCACGTGAGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATTGTTGTGGGCAAGGAG........................	22	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGGCAAGGAGGACAAC..................	21	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGGCAAGGAG........................	18	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGTTGTGGGCAAGGA.........................	20	1	1.00	1	0	0	0	0	0	1

droAna3

GTCGTGCT---CTCCCCCCGGCCAT---TGAGTCAT---CCACGCACCGCAGAGAGGTAATC-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGA----------------------AGGATGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---TCT---CCTCCAGATCTCAGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCGTGCT---CTGCCGCCGGCTAT---TGAGTCGT---CCACGCAGCGCAGAGAGGTAAAAT-TAAGG-ATTTCGG--------------AAATGGTTTT---CA-AG------------------GATTGAGAACCCAAGATCAACCTTTTGATGAACTGAAATCAATCTCTTTCCCTCTTACAGCAAATGAGTGATACACTT------GTAAATTTAAT------------------------------------------------------------------------------------------------------------TAATCAAATTATTAGTTTGAAATAACTTGAACCAAACGATCACAGTTTTGCTTCACTCATAGCTTTGCTCTCCTACAACAATATAATCCT--T-------------AT-ACAT-------------------------------------------T--ACATTTTAT--------TTAATTC-----T------------------------TAACT-------------TCT-TCTTATTTATTA----ATT--ATT---CCA---TTTTCAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGTGAGGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTCGTGCT---CTGCCACTGGCCAT---TGAGTCGT---CCACGCAGCACAGAGAGGTAAAA--AGCGG-ACTTCGC---------------AATGGGTAG---AA-AA------------------GATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCACAGTTTTGCTCAATTTTTAGCTTAGCTCAA---------------TCTCAACAGA---ACATAAATCGGGAAACTGTAGACTCCCCCCATTTTAAGCTCCACGCATTCAAAAAATGCGCTT-------------CT-----AAACAT-------------AACTTTTAACTTTACATATCCACTAACAT--TA----TCTTTAC--------TTCCA---CCT---CCAAAAGATCTCCGATATTGTTGTGGGCAAGGAAGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCCGTGCT---CTGCCACCGTCCAT---TGAGTCGT---CCACTCAGCGCAGAGAGGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCGGACTTCG-----------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT--------------------------------------TTA---TCA---CACGCAGATCTCCGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAATCAA----T----------------------------------------------------TTTCGTATC----------------TAA------------------------------------------------------------TA-----------GATC-------TT-----G-ACCT--------TTTTATACTTAATACTAAACT--------------------------------------TCA---TTTCCCATAACAGATCTCCGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTC----------------TAA------------------------------------------------------------TA----------AGAT--------TTAAGTC-----C----------TAA--------------TC-------------ACTTACTAATTTCTTA----ATT--A-------A---TTCACAGATCTCCGATATTGTTGTGGGCAAGGAGGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

AATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCT-------------TACTTATTACTTAACT--------------------------------------TTA---TCC---TGCTCAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGGCAAAGAGGACAAC..................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCAAAGAGGACAACGTATC-............	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGGCAAAGAGGAC.....................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATATTGTTGTGGGCA.............................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCAAAGAGGACAACGTA...............	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGGCAAAGAGGACAACG.................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGGCAAAGAGGACAA...................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCAAAGAGGACAACGTATC-............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATTGTTGTGGGCAA............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGATATTGTTGTGGGCAAAG..........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTTGTGGGCAAAGAGGAC.....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGTGGGCAAAGAGGAC.....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----AAACCT-------------TACTTATTACTTAACT--------------------------------------TAA---TCA---TGCACAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGATATTGTTGTGGGC..............................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGGCAAAGAGGAC.....................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAAAGAGGACAACGTATC-CGCT........	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATATTGTTGTGGGCAAAGAGGAC.....................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGGCAAAGAGGAC.....................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGTTGTGGGCAAAGAGGAC.....................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-----AAACCT-------------TACTTATTACTTAACT--------------------------------------TAA---TCA---TGCACAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCAAAGAGGACAACGT................	20	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGCAAAGAGGACAACGT................	22	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGCAAAGAGGACAACGTATC-C...........	26	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGGCAAAGAG........................	18	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGGACAACGTATC-CGCT........	21	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGGCAAAGAGGAC.....................	21	1	1.00	1	0	0	1	0

droYak3

TTTCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------GAAT-------TC-----AAACTC----------TTATACTTATTACTCAACT--------------------------------------TCA---TTT---TGCGCAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGGCAAAGAGGACAAC..................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGATATTGTTGTGGGC..............................	19	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGTTGTGGGCAAAGA.........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCGATATTGTTGTGGGCAAAGAG........................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGATATTGTTGTGGGCAAAGA.........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTGGGCAAAGAGGACAAC..................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGGCAAAGAGGACAACGT................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCAATGCAT----------------------------------------------------TTCCTTTTC----------------TA-------------------------------------------------------------TA-----------GAAT-------TT-----GAACCC----------TTATACTTATTACTTAACT--------------------------------------AAA---TTA---TGTGCAGATCTCCGATATTGTTGTGGGCAAAGAGGACAACGTATC-CGCTCGGGAGGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGTTGTGGGCAAAGAGGA......................	23	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGGCAAAGAGGA......................	20	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCAAAGAGGACAACGTATC-CGCTC.......	29	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCAAAGAGGACAACGTATC-CGC.........	27	1	1.00	1	0	0	0	1	0	0	0

dmo_1235

scaffold_6496:23751590-23751874 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads