dmo_1225

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GGAAGCTATTTGCTCGAGTTCCGAAAAGGATCCGGAGAAGCCACAGCTGGGTAAGTTTCACATTATATGATCAGTGTATTATTAAGAGAAGATCTTATCGCGACGTCCATTAAGTGAAACTGTTTCCGACATATAATAATCACAGATAATATAATTATTATTGTCTTCTTAATTTCTGGTATGAAGTGTCGGCAGTTCAGCTTTATGAACTAAACAATGTATGTAGACTTTTTATATGTCTCTCTGTTCGC ********************************************************(((.(((...(((..(((......(((((.....))))).)))...)))...))))))..............***********************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo
..............................................................................................................TAAGTGAAACTGTTTCCGAC.........................................................................................................................	20	0	1	1.00	1	1	0	0
.........................AAGGATCCGGAGAAGCCACAGCTGG.........................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0
..........................................................................................................................................................................AATTGCTGGGATGAAGTGT..............................................................	19	2	1	1.00	1	0	1	0
..........................................................CACATTATATGATCAGTGT..............................................................................................................................................................................	19	0	1	1.00	1	1	0	0
....................................................................................................................................................................................................................................TTTTTATATGTCTCTCTGTTCGC	23	0	1	1.00	1	0	1	0
............................................................................................................................................................................................................ATGAACTAAACAATGTATGTAGA........................	23	0	1	1.00	1	1	0	0
...............GAGTTCCGAAAAGGATCCGG........................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0
.....................................................................................................................................................................................TGAAGTGTCGGCAGTTCAGCTTT...............................................	23	0	1	1.00	1	1	0	0
......TATTTGCTCGAGTTCCGAAAAGGATCC..........................................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0
..........................................................................................................................................................................AATTTCTGGGATGAGGTGTGG............................................................	21	3	1	1.00	1	0	1	0
................................CGGAGAAGCCACAGCTGG.........................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0
..........................................................................................................................................................................AATTTCTGGTATGAAGTGTCGGCA.........................................................	24	0	1	1.00	1	0	1	0
..........................................ACTGCTGGGTAAGTTTCCC..............................................................................................................................................................................................	19	2	3	0.33	1	1	0	0
..................................................................AGGATCAGTGTATTATAAA......................................................................................................................................................................	19	2	4	0.25	1	1	0	0
...........................................................................................................................................................................ATTGCTGGGATGAAGTGT..............................................................	18	2	4	0.25	1	0	1	0
..................................................................ATGATCAGTGTATTATAAAA.....................................................................................................................................................................	20	2	6	0.17	1	0	0	1
..................................................................ATGATCAGTGTATTATATA......................................................................................................................................................................	19	2	14	0.14	2	0	0	2
..................................................................ATGATCAGTGTATTATAC.......................................................................................................................................................................	18	2	8	0.13	1	0	0	1
...........................................................................................................................................................................ATTTCTGGGATGAGGTGT..............................................................	18	2	8	0.13	1	0	1	0
..........................................................................................................................................................................AATTTCTGGGATGAGGTGTG.............................................................	20	3	9	0.11	1	0	1	0
..................................................................ATGATCAGTGTATTATTTTC.....................................................................................................................................................................	20	3	20	0.10	2	0	0	2
............................................................................................................................................................................TTTCTGGGATGAGGTGTGG............................................................	19	3	20	0.05	1	1	0	0
..........................................................................................GATGTTATCGCGACGGTC...............................................................................................................................................	18	3	20	0.05	1	1	0	0

CCTTCGATAAACGAGCTCAAGGCTTTTCCTAGGCCTCTTCGGTGTCGACCCATTCAAAGTGTAATATACTAGTCACATAATAATTCTCTTCTAGAATAGCGCTGCAGGTAATTCACTTTGACAAAGGCTGTATATTATTAGTGTCTATTATATTAATAATAACAGAAGAATTAAAGACCATACTTCACAGCCGTCAAGTCGAAATACTTGATTTGTTACATACATCTGAAAAATATACAGAGAGACAAGCG ***********************************************************************************************************************(((.(((...(((..(((......(((((.....))))).)))...)))...))))))..............********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
.......................................................................................................................................TAGAAGTGTCCATTATATTAA...............................................................................................	21	3	5	2.00	10	6	4
.......................................................................................................................................TAGAAGTGTCCATTATATTA................................................................................................	20	3	14	1.71	24	16	8
........................................................................................................................................AGAAGTGTCCATTATATTAA...............................................................................................	20	3	20	0.30	6	5	1
.....................GCTTTTGCTAGGCCCCTTG...................................................................................................................................................................................................................	19	3	8	0.13	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:22423442-22423692 -	dmo_1225	GGAAGCTATTTGCTCGAGTTCCGAAAAGGATCCGGAGAAGCCACAGCTGGGTAAGTTTCAC-ATT----ATAT-------------------------------------------GATCAGTGTATTATTAAGAGA---------AGATCTTATCGCGACGTCCAT-TA--------AGTGAAACTGTTTCCGACATATAATAATCACAGATAATATAATT-ATTATTGTC-TTCTTAATTTCTGGTATGAAGTGTCGGCAGTTCAGCTTTATGAACTAAACAATGTATGTAGACTTTTTATATGTCTCTCTGTTCGC
droVir3	scaffold_12875:2790032-2790100 +		GGAAGCCATTTGTGCGAGTTCCGAAAAGGAACCCGAGAAGCCGCAGTTGGGTAAGTTCAAC-ATG----AGAT-------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15112:3375933-3375981 -		GGAGGCAATTTGC---------GAGAAGGAGGTCGAGAAGCCGCAATTGGGTAAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004382:746367-746424 +		GGAGGCAATTTGCGCCAGCACCGAGAAGGATCTCGAAAAGCCACATTTAGGTGAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	3:19173325-19173393 +		GGAGGCCATTTGTGGGAGCACCGAGAAGGATCTCGAGAAGCCGCCATTAGGTGAGTGCCCAAACT----ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_37:174314-174382 +		GGAGGCCATTTGTGGGAGCACCGAGAAGGATCTCGAGAAGCCGCCATTAGGTGAGTGCCCAAACT----ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:14041272-14041328 +		GGAGGCCATATGTTCGAGTCAGGAAAAGGATCTGGAAAAGCCGGCATTAGGTAAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396759:2098235-2098290 -		GGAGGCCATTTGTGCGAGTACAGAAAAGGATCTGGAAAAGCCAGCATTAGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302470:950428-950489 -		GGAGGCCATTTGTGCGAGCACTGAGAAGGATCTGGAGAAGCCTCCGCTAGGTGAGTTATACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453851:752886-752983 -		GGAGGCCATTTGTGCGAGCACCGAGAAGGATCTGCAGAAGCCAGCTCTTGGTGAGTTTTCTTTAG----ATAT--------AATATACTCTATATGTCCTAGAAAGGC--------GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491214:1844027-1844188 +		GGAGGCTATTTGTGCCAGCACCGAGAAGGATCTTGAAAAGCCAGCGCTGGGTGAGTTTTCTCAAC----ATATTTAGTGATAATACGCCCTAAATTACAGAA----G---------------------------------------AAAG----------CGTGCCC-TAAATGGCACTGTAAAATGGTG--TAATATTTACTAGTTATACCTGATATAATT-------------------------------------------------------------------------------------------------
droRho1	scf7180000759425:11610-11778 +		GGAGGCCATTTGTGCCAGCACCGAGAAGGATCTGGAGAAGCCAGCACTGGGTGAGTTTCCTTGACTCGGGTATATAG--------TAGTCCATATTACAGAA----G---------------------------------------GGAG----------CGT--GCCAAAGTATCACAGTAAAATGGTG--TAATGTTTACTAATTACAGCTGAGATAATTCACAATTGTC-TT------------------------------------------------------------------------------------
droBia1	scf7180000301506:1937871-1937928 -		GGAGGCCATTTGCGGCAGCACCGAGAAGGATCTGGAGAAGCCAGCCTTGGGTGAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415866:329474-329531 -		GGAGGCCATTTGTGGGAGCACCGAGAAGGATCTGGAGAAGCCAGCATTGGGTGAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409672:2612541-2612598 +		GGAGGCCATTTGTGGGAGCACCGAAAAGGATCTGGAGAAGCCAGCATTGGGTGAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:12550990-12551069 -		GGAGGCGATTTGCGGGAGCACGGAGAAGGATCTGGAGAAGCCGGCATTGGGTAAGTCTCCCCAAAA--------------------------------------AGGGCATCATATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:13223339-13223417 -		GGAGGCGATTTGCGGGAGCACGGAGAAGGATCTGGAGAAGCCGGCATTGGGTAAGTTTCCCCAAG---------------------------------------AGGGCATCATATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_1:10048938-10049016 -		GGAGGCGATTTGCGGGAGCACGGAGAAGGATCTGGAGAAGCCGGCATTGGGTAAGTTTCCTCAAG---------------------------------------AGCGCATCATATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2R:16430251-16430418 +		GGAGGCCATTTGCGGCAGCACGGAGAAGGATCTGGAGAAGCCGGCATTGGGTGAGTTTTCCTATC----ATAT--------A------TTTATAAAACAGAG----------------------------------AAATTGTGTGGGA------------GTGCGC-CAGATAGCACAGTGAAAAGGTG--TCATATTTACTAATTATAGCCGTGATATATCACAATTGTCATT------------------------------------------------------------------------------------
droEre2	scaffold_4845:13309142-13309219 +		GGAAGCCATTTGCGGGAACACGGAGAAGGATCTGGAGAAGCCGGCATTGGGTGAGTTTTCCCAAG----------------------------------------GGGTATTATATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GGAAGCTATTTGCTCGAGTTCCGAAAAGGATCCGGAGAAGCCACAGCTGGGTAAGTTTCAC-ATT----ATAT-------------------------------------------GATCAGTGTATTATTAAGAGA---------AGATCTTATCGCGACGTCCAT-TA--------AGTGAAACTGTTTCCGACATATAATAATCACAGATAATATAATT-ATTATTGTC-TTCTTAATTTCTGGTATGAAGTGTCGGCAGTTCAGCTTTATGAACTAAACAATGTATGTAGACTTTTTATATGTCTCTCTGTTCGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................TA--------AGTGAAACTGTTTCCGAC...........................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................AAGGATCCGGAGAAGCCACAGCTGG.............................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................CAC-ATT----ATAT-------------------------------------------GATCAGTGT..................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TTTTTATATGTCTCTCTGTTCGC	23	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................ATGAACTAAACAATGTATGTAGA........................	23	1	1.00	1	1	0	0	0	0	0
...............GAGTTCCGAAAAGGATCCGG............................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................TGAAGTGTCGGCAGTTCAGCTTT...............................................	23	1	1.00	1	1	0	0	0	0	0
......TATTTGCTCGAGTTCCGAAAAGGATCC..............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
................................CGGAGAAGCCACAGCTGG.............................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................AATTTCTGGTATGAAGTGTCGGCA.........................................................	24	1	1.00	1	0	0	0	0	0	1
.......................................................................AT-------------------------------------------GATCAGTGTATTATAC...........................................................................................................................................................................................	18	8	0.13	1	0	0	0	0	1	0
.......................................................................AT-------------------------------------------GATCAGTGTATTATTTTC.........................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2	0

droVir3

GGAAGCCATTTGTGCGAGTTCCGAAAAGGAACCCGAGAAGCCGCAGTTGGGTAAGTTCAAC-ATG----AGAT-------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......CATTTGTGCGAGTTCCGAAAA....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ATTTGTGCGAGTTCCGAAAAGGAACCC.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCCGAAAAGGAACCCGAGAAGC......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAAAGGAACCCGAGAAGC......................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GAAGCCATTTGTGCGAGTT...........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTGTGCGAGTTCCGAAAAGGA.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ATTTGTGCGAGTTCCGAAAAGG..................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AAGGAACCCGAGAAGCCGCAGT................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CCCGAGAAGCCGCAGTTGG.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACCCGAGAAGCCGCAGTTGG.............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GAAAAGGAACCCGAGAAGCCGCAGTTG..............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AAGGAACCCGAGAAGCCGCAGTTGG.............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................CGAGAAGCCGCAGTTGGGAT..........................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAGAAGCCGCAGTTGGGATG.........................................................................................................................................................................................................................................................................	20	8	0.25	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GGAGGCAATTTGC---------GAGAAGGAGGTCGAGAAGCCGCAATTGGGTAAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GGAGGCAATTTGCGCCAGCACCGAGAAGGATCTCGAAAAGCCACATTTAGGTGAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......ATTTGCGCCAGCACCGAGAAGGATCT..............................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	4	0
......AATTTGCGCCAGCACCGA.......................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	1	2	0
.......ATTTGCGCCAGCACCGAGAAGG..................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	3	0
..........TGCGCCAGCACCGAGAAGGATCT..............................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	1	2	0
........................GAAGGATCTCGAAAAGCC.....................................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0
.............GCCAGCACCGAGAAGGATCT..............................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
......AATTTGCGCCAGCACCGAGAAGGAT................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	1	0
.........................AAGGATCTCGAAAAGCCACATTTAGG............................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	2	0
...........GCGCCAGCACCGAGAAGGATCT..............................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
.......ATTTGCGCCAGCACCGAGAAGGAT................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0
..........TGCGCCAGCACCGAGAAGGAT................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
...............................CTCGAAAAGCCACATTTAG.............................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	1	0
..........................AGGATCTCGAAAAGCCACATTTAGG............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
....GCAATTTGCGCCAGCACCGA.......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..AGGCAATTTGCGCCAGCACCGAGAAGG..................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
................AGCACCGAGAAGGATCTCGAAAAG.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
........................GAAGGATCTCGAAAAGCCAC...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.................................CGAAAAGCCACATTTAGG............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..AGGCAATTTGCGCCAGCACCGAG......................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
................AGCACCGAGAAGGATCTC.............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...............................CTCGAAAAGCCACATTTAGGAT..........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...................ACCGAGAAGGATCTCGAAAAGC......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.....CAATTTGCGCCAGCACCGAGAAG...................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..................CACCGAGAAGGATCTCGAAAAGC......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.............GCCAGCACCGAGAAGGAT................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........TGCGCCAGCACCGAGAAGGATCTCG............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
...............................CTCGAAAAGCCACATTTAGGA...........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...............CAGCACCGAGAAGGATCTCG............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
........................GAAGGATCTCGAAAAGCCACATTTAG.............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
........TTTGCGCCAGCACCGAGAAGG..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
......AATTTGCGCCAGCACCGAGA.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
......AATTTGCGCCAGCACCGAGAAGGA.................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
......AATTTGCGCCAGCACCGAGAAGG..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...........GCGCCAGCACCGAGAAGGATCTCGAA..........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.......ATTTGCGCCAGCACCGAGA.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......AATTTGCGCCAGCACCGAGAAG...................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....CAATTTGCGCCAGCACCGAGAAGGA.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.........................AAGGATCTCGAAAAGCCACATTTAGGAT..........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
........TTTGCGCCAGCACCGAGAAGGAT................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.............................ATCTCGAAAAGCCACATTTAGG............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
........................GAAGGATCTCGAAAAGCCACATTTAGG............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..........TGCGCCAGCACCGAGAAGGA.................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..................................GAAAAGCCACATTTAGGAT..........................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	1	0

dp5

GGAGGCCATTTGTGGGAGCACCGAGAAGGATCTCGAGAAGCCGCCATTAGGTGAGTGCCCAAACT----ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................GCACCGAGAAGGATCTCGAG..........................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	2	0	0	1	0	0	0	0	0
..................CACCGAGAAGGATCTCGAG..........................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......ATTTGTGGGAGCACCGAGAA....................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................AAGGATCTCGAGAAGCCGCCATTAGGA...........................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.................GCACCGAGAAGGATCTCGAGAAGC......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....GCCATTTGTGGGAGCACCGA.......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................CACCGAGAAGGATCTCGAGAAGC......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................GCACCGAGAAGGATCTCGA...........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GAAGGATCTCGAGAAGCC.....................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TGTGGGAGCACCGAGAAGGATCTCGA...........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
GGAGGCCATTTGTGGGAGCACCGA.......................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......ATTTGTGGGAGCACCGAG......................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GAAGGATCTCGAGAAGCCGC...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GAAGGATCTCGAGAAGCCGCC..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................CGAGAAGCCGCCATTAGGATT.........................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
GGAGGCCATTTGTGGGAG.............................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGAGGCCATTTGTGGGAGCACCGAGAAGGATCTCGAGAAGCCGCCATTAGGTGAGTGCCCAAACT----ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................ACCGAGAAGGATCTCGAGAAG.......................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
......CATTTGTGGGAGCACCGAGAAGGATC...............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
..........................AGGATCTCGAGAAGCCGC...................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
..........TGTGGGAGCACCGAGAAGGATCTCGA...........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
......CATTTGTGGGAGCACCGA.......................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.......ATTTGTGGGAGCACCGAGAAGGA.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.......ATTTGTGGGAGCACCGAGAAGGAT................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...............................CTCGAGAAGCCGCCATTAGGATT.........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0

droAna3

GGAGGCCATATGTTCGAGTCAGGAAAAGGATCTGGAAAAGCCGGCATTAGGTAAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................GTCAGGAAAAGGATCTGGAAAAGCC.....................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	3	1	0	0	0
......CATATGTTCGAGTCAGGAAAAGG..................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	1	0
...............GAGTCAGGAAAAGGATCTGGAAAAGC......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
.......................AAAAGGATCTGGAAAAGCCGGC..................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
........TATGTTCGAGTCAGGAAAAG...................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................CAGGAAAAGGATCTGGAAAAGCCGGC..................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.....................GGAAAAGGATCTGGAAAAGCC.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................AGGATCTGGAAAAGCCGGCATT...............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................AGGAAAAGGATCTGGAAAAGCCGGC..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
......................GAAAAGGATCTGGAAAAGCCGGC..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...GGCCATATGTTCGAGTCAGG........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........TATGTTCGAGTCAGGAAAAGG..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...GGCCATATGTTCGAGTCAGGA.......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
........TATGTTCGAGTCAGGAAAAGGATCT..............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......ATATGTTCGAGTCAGGAAA.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
..........................AGGATCTGGAAAAGCCGGCATTAGG............................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................ATCTGGAAAAGCCGGCATTAGG............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................TCTGGAAAAGCCGGCATTAGG............................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................AAGGATCTGGAAAAGCCGGC..................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................................GAAAAGCCGGCATTAGGA...........................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0

droBip1

GGAGGCCATTTGTGCGAGTACAGAAAAGGATCTGGAAAAGCCAGCATTAGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGAGGCCATTTGTGCGAGCACTGAGAAGGATCTGGAGAAGCCTCCGCTAGGTGAGTTATACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGAGGCCATTTGTGCGAGCACCGAGAAGGATCTGCAGAAGCCAGCTCTTGGTGAGTTTTCTTTAG----ATAT--------AATATACTCTATATGTCCTAGAAAGGC--------GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGAGGCTATTTGTGCCAGCACCGAGAAGGATCTTGAAAAGCCAGCGCTGGGTGAGTTTTCTCAAC----ATATTTAGTGATAATACGCCCTAAATTACAGAA----G---------------------------------------AAAG----------CGTGCCC-TAAATGGCACTGTAAAATGGTG--TAATATTTACTAGTTATACCTGATATAATT-------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGAGGCCATTTGTGCCAGCACCGAGAAGGATCTGGAGAAGCCAGCACTGGGTGAGTTTCCTTGACTCGGGTATATAG--------TAGTCCATATTACAGAA----G---------------------------------------GGAG----------CGT--GCCAAAGTATCACAGTAAAATGGTG--TAATGTTTACTAATTACAGCTGAGATAATTCACAATTGTC-TT------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGAGGCCATTTGCGGCAGCACCGAGAAGGATCTGGAGAAGCCAGCCTTGGGTGAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGAGGCCATTTGTGGGAGCACCGAGAAGGATCTGGAGAAGCCAGCATTGGGTGAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGAGGCCATTTGTGGGAGCACCGAAAAGGATCTGGAGAAGCCAGCATTGGGTGAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGAGGCGATTTGCGGGAGCACGGAGAAGGATCTGGAGAAGCCGGCATTGGGTAAGTCTCCCCAAAA--------------------------------------AGGGCATCATATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......GATTTGCGGGAGCACGGAGAAG...................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GGCGATTTGCGGGAGCACGGAG......................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................AGCACGGAGAAGGATCTGG............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACGGAGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GATTTGCGGGAGCACGG........................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CTGGAGAAGCCGGCATTGGGAT..........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AGCACGGAGAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGAGGCGATTTGCGGGAGCACGGAGAAGGATCTGGAGAAGCCGGCATTGGGTAAGTTTCCCCAAG---------------------------------------AGGGCATCATATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........TGCGGGAGCACGGAGAAGGATCTGGA...........................................................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
........................GAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AGCACGGAGAAGGATCTGGAGAAGCCGGCC.................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................CACGGAGAAGGATCTGGAGAAGCCGG...................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........GCGGGAGCACGGAGAAGGATCTGGAGAT........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................AGGATCTGGAGAAGCCGGCATTGGGA...........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................ACGGAGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......GATTTGCGGGAGCACGGAGAAGG..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CACGGAGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACGGAGAAGGATCTGGAGAAGCCGGCA.................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................GAAGGATCTGGAGAAGCCGGCATT...............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................AGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AAGGATCTGGAGAAGCCGGCATTGGGA...........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................CACGGAGAAGGATCTGGAGA.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................AGCACGGAGAAGGATCTGGA...........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......GATTTGCGGGAGCACGGAGAAGGATCTG.............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GATCTGGAGAAGCCGGCATTGGG............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AGGATCTGGAGAAGCCGGCATTGG.............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AAGGATCTGGAGAAGCCGGCATTGGGAT..........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................CACGGAGAAGGATCTGGAG..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TTGCGGGAGCACGGAGAAGGATCT..............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................GAGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGGAGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................GAAGGATCTGGAGAAGCCGGCATTGGGA...........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

GGAGGCGATTTGCGGGAGCACGGAGAAGGATCTGGAGAAGCCGGCATTGGGTAAGTTTCCTCAAG---------------------------------------AGCGCATCATATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......GATTTGCGGGAGCACGGAGAAGG..................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	3	1	0
.............................ATCTGGAGAAGCCGGCATTGGG............................................................................................................................................................................................................................................................................	22	1	3.00	3	0	2	1	0
......GATTTGCGGGAGCACGGAGAAG...................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	1	0	0
.................GCACGGAGAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0
........................GAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	1
.................GCACGGAGAAGGATCTGGAGA.........................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0
................AGCACGGAGAAGGATCTGGAGAA........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.......ATTTGCGGGAGCACGGAGAAGGA.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
...............................CTGGAGAAGCCGGCATTGGG............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.....CGATTTGCGGGAGCACGGAG......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
........................GAAGGATCTGGAGAAGCCGGCATT...............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
......GATTTGCGGGAGCACGGAGAAGGA.................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.................GCACGGAGAAGGATCTGGAG..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.......ATTTGCGGGAGCACGGAGAA....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
................................TGGAGAAGCCGGCATTGGGAT..........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
........................GAAGGATCTGGAGAAGCCGGCATTGGGA...........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
.................GCACGGAGAAGGATCTGGAGAA........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.................GCACGGAGAAGGATCTGGA...........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
......GATTTGCGGGAGCACGGAGAAGGAT................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...........GCGGGAGCACGGAGAAGGAT................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
....GCGATTTGCGGGAGCACGGAGA.....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.......ATTTGCGGGAGCACGGAGAAGGATCT..............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...................ACGGAGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..................CACGGAGAAGGATCTGGAGA.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
......GATTTGCGGGAGCACGGA.......................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

droYak3

GGAGGCCATTTGCGGCAGCACGGAGAAGGATCTGGAGAAGCCGGCATTGGGTGAGTTTTCCTATC----ATAT--------A------TTTATAAAACAGAG----------------------------------AAATTGTGTGGGA------------GTGCGC-CAGATAGCACAGTGAAAAGGTG--TCATATTTACTAATTATAGCCGTGATATATCACAATTGTCATT------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...GGCCATTTGCGGCAGCACGGA.......................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	1	2	0	0	0	0	0	0	0
...................ACGGAGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0
........................GAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	18	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0
........................GAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.....................GGAGAAGGATCTGGAGAAGCCGGCATTGG.............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................AAATTGTGTGGGA------------GTGCGC-.......................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......ATTTGCGGCAGCACGGAGA.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................GGAGAAGGATCTGGAGAAGC......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................ATAT--------A------TTTATAAAACAGAG----------------------------------A......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................GAAGGATCTGGAGAAGCCGGCATTGG.............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........TTGCGGCAGCACGGAGAA....................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............CAGCACGGAGAAGGATCTGGAGA.........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................GAAGGATCTGGAGAAGCCGGCATT...............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CACGGAGAAGGATCTGGAGG.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................ACGGAGAAGGATCTGGAGAA........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................ACGGAGAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............GGCAGCACGGAGAAGGATCTGGAGAA........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........TTTGCGGCAGCACGGAGAAGGATCTGG............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............GGCAGCACGGAGAAGGATCTGGA...........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................TGTGTGGGA------------GTGCGC-CAGATAGCA..............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................AGAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................GCACGGAGAAGGATCTGGAGA.........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................AGCACGGAGAAGGATCTGGAGA.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................GAAGGATCTGGAGAAGCCGGCA.................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................AGCACGGAGAAGGATCTGGA...........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................GAGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................GATCTGGAGAAGCCGGCATTG..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GGAAGCCATTTGCGGGAACACGGAGAAGGATCTGGAGAAGCCGGCATTGGGTGAGTTTTCCCAAG----------------------------------------GGGTATTATATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................AACACGGAGAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	3	0	0	1	0	0
...........................GGATCTGGAGAAGCCGGCATTGGG............................................................................................................................................................................................................................................................................	24	1	4.00	4	3	1	0	0	0	0	0
..................CACGGAGAAGGATCTGGA...........................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
................AACACGGAGAAGGATCTGGA...........................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	1	1	0
.......ATTTGCGGGAACACGGAGA.....................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	1	0	0
.........................AAGGATCTGGAGAAGCCGGCATTGGG............................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	0	0	1	0
............................GATCTGGAGAAGCCGGCATTGG.............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
......CATTTGCGGGAACACGGAGAA....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.......ATTTGCGGGAACACGGAGAAGGAT................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
........................GAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.................ACACGGAGAAGGATCTGGA...........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
.......................AGAAGGATCTGGAGAAGCCGGCATTG..............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.................ACACGGAGAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.....................GGAGAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
.......ATTTGCGGGAACACGGAGAAG...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...................ACGGAGAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
...AGCCATTTGCGGGAACACGGAG......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.GAAGCCATTTGCGGGAACACG.........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
......................GAGAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
......CATTTGCGGGAACACGGAG......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
........TTTGCGGGAACACGGAGA.....................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
......................GAGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.................ACACGGAGAAGGATCTGGAGAA........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
................AACACGGAGAAGGATCTGG............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
............................GATCTGGAGAAGCCGGCAT................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
.GAAGCCATTTGCGGGAACAC..........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.........................AAGGATCTGGAGAAGCCGGCATTGGC............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
.........................AAGGATCTGGAGAAGCCGGCATTGGGA...........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
....................CGGAGAAGGATCTGGAGAAGCC.....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.....................GGAGAAGGATCTGGAGAAGCCGGC..................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...............................CTGGAGAAGCCGGCATTGGGATG.........................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	1	0	0	0	0

dmo_1225

scaffold_6496:22423492-22423642 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-6.0	-5.9	-5.9