ID:

dmo_12

 Coordinate:

scaffold_6500:14019392-14019456 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.4 -30.3

Flybase annnotation

Antisense to intron [Dmoj\GI11243-in]; utr5 [utr5_plus_812]; utr5 [utr5_plus_813]

No Repeatable elements found

Sense Strand Reads

TCGGGTTAACTTTGGCAATTGGAGTGCGCACTGAATCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATTCAACCGAAAGTCCATAAATATTGATATATGATGATGATTTTCCAAT

***********************************(((((..(((((((...((((((.(((.(((((.(((((...............))))))))))))).))))))...)))))))..)))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 V056

head

 V049

head

 M046

female body

 M060

embryo
..................................................ACAAGGTACATATCAGAGTGTTTC........................................................................................... 24 0 1 7545.00 7545 7389 95 54 6 1
.................................................AACAAGGTACATATCAGAGTGTTTC........................................................................................... 25 0 1 3143.00 3143 3117 18 6 1 1
.................................................AACAAGGTACATATCAGAGTGTTT............................................................................................ 24 0 1 1495.00 1495 1439 29 18 9 0
..................................................ACAAGGTACATATCAGAGTGTTT............................................................................................ 23 0 1 974.00 974 945 19 4 6 0
.................................................AACAAGGTACATATCAGAGTGT.............................................................................................. 22 0 1 522.00 522 514 7 1 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCC.......................................................................................... 25 0 1 294.00 294 287 5 1 1 0
.................................................AACAAGGTACATATCAGAGTGTT............................................................................................. 23 0 1 236.00 236 231 3 1 1 0
.................................................AACAAGGTACATATCAGAGTGTTTCC.......................................................................................... 26 0 1 177.00 177 177 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTT............................................................................................. 22 0 1 144.00 144 141 3 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTC............................................................................................ 23 1 1 73.00 73 72 0 1 0 0
.................................................AACAAGGTACATATCAGAGTGTTTT........................................................................................... 25 1 1 59.00 59 59 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTC............................................................................................ 24 1 1 58.00 58 58 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCT.......................................................................................... 25 1 1 51.00 51 50 1 0 0 0
..................................................ACAAGGGACATATCAGAGTGTTTC........................................................................................... 24 1 1 40.00 40 38 2 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTCT.......................................................................................... 26 1 1 36.00 36 36 0 0 0 0
..................................................ACAAGGCACATATCAGAGTGTTTC........................................................................................... 24 1 1 35.00 35 34 0 1 0 0
.................................................AACAAGGTACATATCAGAGTGTTTCTC......................................................................................... 27 1 1 30.00 30 30 0 0 0 0
..................................................ACAAGGAACATATCAGAGTGTTTC........................................................................................... 24 1 1 24.00 24 22 2 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTTC.......................................................................................... 26 1 1 24.00 24 24 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCA.......................................................................................... 25 1 1 22.00 22 20 2 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTT........................................................................................... 24 1 1 21.00 21 20 0 1 0 0
.................................................AACAAGGTACATATCAGAGTG............................................................................................... 21 0 1 16.00 16 15 0 0 1 0
.................................................AACAAGGTACATATCAGAGTGTTTCCC......................................................................................... 27 0 1 15.00 15 15 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCTC......................................................................................... 26 1 1 15.00 15 15 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTCTCC........................................................................................ 28 2 1 14.00 14 14 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTCA.......................................................................................... 26 1 1 14.00 14 14 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTTT.......................................................................................... 26 2 1 13.00 13 13 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCCC......................................................................................... 26 0 1 12.00 12 12 0 0 0 0
...................................................CAAGGTACATATCAGAGTGTTTC........................................................................................... 23 0 1 12.00 12 10 1 0 1 0
..................................................ACAATGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 11.00 11 11 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCTCC........................................................................................ 27 2 1 9.00 9 9 0 0 0 0
..................................................ACAAGTTACATATCAGAGTGTTTC........................................................................................... 24 1 1 9.00 9 9 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGT.............................................................................................. 21 0 1 9.00 9 9 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTA........................................................................................... 24 1 1 9.00 9 9 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTTTC......................................................................................... 27 2 1 8.00 8 8 0 0 0 0
..................................................ACAGGGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 7.00 7 7 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGCTTC........................................................................................... 24 1 1 7.00 7 6 1 0 0 0
..................................................ACAAGGTACACATCAGAGTGTTTC........................................................................................... 24 1 1 7.00 7 7 0 0 0 0
.................................................AACAAGGGACATATCAGAGTGTTTC........................................................................................... 25 1 1 7.00 7 6 1 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTTC.......................................................................................... 25 1 1 7.00 7 7 0 0 0 0
.................................................AACAAGTTACATATCAGAGTGTTTC........................................................................................... 25 1 1 7.00 7 7 0 0 0 0
..................................................ACAAGGTACATATCAGAGTTTTTC........................................................................................... 24 1 1 6.00 6 5 1 0 0 0
..................................................ACAAAGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 6.00 6 6 0 0 0 0
..................................................ACAAGGTACGTATCAGAGTGTTTC........................................................................................... 24 1 1 6.00 6 6 0 0 0 0
.................................................AACAAGGCACATATCAGAGTGTTT............................................................................................ 24 1 1 6.00 6 6 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGCTTC........................................................................................... 25 1 1 6.00 6 6 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTCC........................................................................................... 25 1 1 5.00 5 5 0 0 0 0
..................................................ACAAGGTACATATCAGAGCGTTTC........................................................................................... 24 1 1 4.00 4 4 0 0 0 0
.................................................AACAAGGTACACATCAGAGTGTTT............................................................................................ 24 1 1 4.00 4 4 0 0 0 0
..................................................ACAAGGTATATATCAGAGTGTTTC........................................................................................... 24 1 1 4.00 4 3 1 0 0 0
..................................................ACAAGGTACATATCAGAGTTTTC............................................................................................ 23 2 1 4.00 4 4 0 0 0 0
.................................................AACAAGGTACATATCAGAGAGTTTC........................................................................................... 25 1 1 4.00 4 4 0 0 0 0
..................................................ACAAGGTACATATCAGAGGGTTTC........................................................................................... 24 1 1 4.00 4 1 2 1 0 0
.................................................AACAAGGTACATATCGGAGTGTTTC........................................................................................... 25 1 1 4.00 4 4 0 0 0 0
..................................................ACAAGGTGCATATCAGAGTGTTTC........................................................................................... 24 1 1 4.00 4 4 0 0 0 0
..................................................ACAAGGTACATATCAGGGTGTTTC........................................................................................... 24 1 1 4.00 4 3 1 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTCC........................................................................................... 24 1 1 4.00 4 4 0 0 0 0
.................................................AACAAGGTACATATCAGAGCGTTT............................................................................................ 24 1 1 4.00 4 4 0 0 0 0
.................................................CACAAGGTACATATCAGAGTGTTTC........................................................................................... 25 1 1 4.00 4 4 0 0 0 0
..................................................ACAAGGTACATATCAGTGTTTC............................................................................................. 22 3 2 3.50 7 7 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGCTT............................................................................................ 24 1 1 3.00 3 3 0 0 0 0
.................................................AAAAAGGTACATATCAGAGTGTTTC........................................................................................... 25 1 1 3.00 3 3 0 0 0 0
...................................................CAAGGTACATATCAGAGTGTTT............................................................................................ 22 0 1 3.00 3 3 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTTCC......................................................................................... 27 1 1 3.00 3 3 0 0 0 0
.................................................AACAAGGTACATATCAGAGCGTTTC........................................................................................... 25 1 1 3.00 3 3 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCCCC........................................................................................ 27 1 1 3.00 3 3 0 0 0 0
.................................................AACAAGGAACATATCAGAGTGTTTC........................................................................................... 25 1 1 3.00 3 3 0 0 0 0
.................................................AACAAGGTACATATCAGAGAGTTT............................................................................................ 24 1 1 3.00 3 3 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTCTC........................................................................................... 24 1 1 3.00 3 3 0 0 0 0
..................................................ACAAGCTACATATCAGAGTGTTTC........................................................................................... 24 1 1 3.00 3 3 0 0 0 0
..................................................ACAAGGCACATATCAGAGTGTTT............................................................................................ 23 1 1 3.00 3 3 0 0 0 0
..................................................ACAAGGTACATATAAGAGTGTTTC........................................................................................... 24 1 1 3.00 3 2 0 1 0 0
.................................................AACAAGGTACATATCAGAGTGTTCT........................................................................................... 25 2 1 3.00 3 3 0 0 0 0
.................................................AACAAGGTACGTATCAGAGTGTTTC........................................................................................... 25 1 1 3.00 3 3 0 0 0 0
..................................................ACAAGGTACATATCGGAGTGTTTC........................................................................................... 24 1 1 3.00 3 3 0 0 0 0
.................................................AACAAGGTACACATCAGAGTGTTTC........................................................................................... 25 1 1 3.00 3 3 0 0 0 0
.................................................AACAAGGTGCATATCAGAGTGTTTC........................................................................................... 25 1 1 3.00 3 3 0 0 0 0
..................................................ACAAGGTACATATCAGCGTGTTTC........................................................................................... 24 1 1 3.00 3 0 0 3 0 0
..................................................ACAAGGTACATATCAGAGAGTTTC........................................................................................... 24 1 1 3.00 3 3 0 0 0 0
..................................................GCAAGGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 3.00 3 3 0 0 0 0
..................................................ACAAGGTACATATGAGAGTGTTTC........................................................................................... 24 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGCTT............................................................................................ 23 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTATATATCAGAGTGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
.................................................AACAATGTACATATCAGAGTGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATATCAGAGT................................................................................................ 19 0 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATATCAGAGTG............................................................................................... 20 0 1 2.00 2 2 0 0 0 0
.......................................................GTACATATCAGAGTGTTTC........................................................................................... 19 0 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATCATAGTGTTT............................................................................................ 24 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGCACATATCAGAGTGTTTCC.......................................................................................... 25 1 1 2.00 2 2 0 0 0 0
..................................................ACAACGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGGACATATCAGAGTGTTT............................................................................................ 24 1 1 2.00 2 2 0 0 0 0
............................................................................................ACCTCTGTATATACCTTTCATT................................................... 22 0 1 2.00 2 1 0 0 1 0
..................................................AAAAGGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTCT........................................................................................... 24 2 1 2.00 2 2 0 0 0 0
.................................................AACATGGTACATATCAGAGTGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATCAGAGT................................................................................................ 20 0 1 2.00 2 2 0 0 0 0
.................................................AGCAAGGTACATATCAGAGTGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGGTTC........................................................................................... 24 1 1 2.00 2 2 0 0 0 0
.................................................AACAAAGTACATATCAGAGTGTTT............................................................................................ 24 1 1 2.00 2 2 0 0 0 0
.................................................GACAAGGTACATATCAGAGTGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATCAGGGTGTTT............................................................................................ 24 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATCAGTGTTT.............................................................................................. 22 2 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATATCAGAGTCTC............................................................................................. 22 2 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTTT.......................................................................................... 25 2 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTCTCTC....................................................................................... 29 3 1 2.00 2 2 0 0 0 0
..................................................ACAAGGAACATATCAGAGTGTTTCC.......................................................................................... 25 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATCTCAGAGTGTTTC........................................................................................... 24 1 1 2.00 2 0 1 1 0 0
..................................................ACAAGGTACATATCCGAGTGTTTC........................................................................................... 24 1 1 2.00 2 0 0 2 0 0
.................................................AGCAAGGTACATATCAGAGTGTTT............................................................................................ 24 1 1 2.00 2 2 0 0 0 0
.................................................TACAAGGTACATATCAGAGTGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
.................................................AACAAAGTACATATCAGAGTGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGAACATATCAGAGTGTTT............................................................................................ 23 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGTTACATATCAGAGTGTTT............................................................................................ 24 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATATCAAAGTGTTTC........................................................................................... 24 1 1 2.00 2 1 1 0 0 0
.................................................AACAAGTTACATATCAGAGTGTT............................................................................................. 23 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATACCAGAGTGTTTC........................................................................................... 24 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATACCAGAGTGTT............................................................................................. 23 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATCAGAATGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATCAGAGGGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATCATAGTGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTC............................................................................................. 23 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTC............................................................................................. 22 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTCCCC........................................................................................ 28 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGGACATATCAGAGTGTTT............................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ACAAGGGACATATCAGAGTGTTTCC.......................................................................................... 25 1 1 2.00 2 2 0 0 0 0
.................................................AACAAGGTACATATTAGAGTGTTTC........................................................................................... 25 1 1 2.00 2 2 0 0 0 0
..................................................ACCAGGTACCTATCAGAGTGTTTC........................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGGAAATATCAGAGTGTTTC........................................................................................... 24 2 1 1.00 1 0 0 1 0 0
....................................................AAGGTATATATCAGAGTGTTTC........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGCACATATCAGAGTGTTTC........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCCA......................................................................................... 26 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTCTCT........................................................................................ 28 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATCTCAGAGTGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTTCC......................................................................................... 26 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTCTTTC........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
...................................................CAAGGTACATATCAGAGTGTTC............................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTG........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCACAGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGCACATATCAGAGTGTTTCT.......................................................................................... 25 2 1 1.00 1 0 0 1 0 0
.................................................AACAAGGTAAATATCAGACTGTTT............................................................................................ 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTACATATCAGAGTGTT............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................AAAAGCTACATATCAGAGTGTTTC........................................................................................... 24 2 1 1.00 1 0 1 0 0 0
..................................................ACAAGGTACATATCACAGTGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTTTTCT........................................................................................... 25 3 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACACATCAGAGTGTTTCT.......................................................................................... 26 2 1 1.00 1 1 0 0 0 0
..................................................ACGAGGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................................AATAAGGTACATATCAGAGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGGACATATCAGTGTGT.............................................................................................. 22 2 1 1.00 1 0 1 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTTTCC........................................................................................ 27 3 1 1.00 1 1 0 0 0 0
....................................................AAGGTACATATCAGAGTGTTTC........................................................................................... 22 0 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCTCT........................................................................................ 27 2 1 1.00 1 1 0 0 0 0
...................................................ACAAGTACATATCAGAGTGTTTC........................................................................................... 23 3 1 1.00 1 1 0 0 0 0
..................................................AAAAGGTACATACCAGAGTGTTT............................................................................................ 23 2 1 1.00 1 0 1 0 0 0
..................................................ACAAGGCACATATCAGAGTGTT............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTTCATATCAGAGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTTCTC........................................................................................ 28 3 1 1.00 1 0 1 0 0 0
..................................................AAAAGGCACATATCAGAGTGTTTC........................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTG............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTATTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGA.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAAAGTGTTTCT.......................................................................................... 25 2 1 1.00 1 0 0 1 0 0
..................................................ACAAGGGACATATCAGAGTGGTT............................................................................................ 23 2 1 1.00 1 0 0 1 0 0
..................................................ACACGGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATTAGAGCGTTT............................................................................................ 24 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCACAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
.................................................GACAAGGTACACATCAGAGTGTTTC........................................................................................... 25 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTTCCC........................................................................................ 28 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGGGACATATCAGAGTGTTTCC.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0
.....................................................AGGTACATATCAGAGCGTTTC........................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACACATCAGAGTGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATAATAGTGTTTC........................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCATT........................................................................................ 27 3 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATTAGAGTGTTC............................................................................................ 24 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGGGACATATCAGAGTGTTTTTC......................................................................................... 27 3 1 1.00 1 1 0 0 0 0
..................................................ACAAGGGACATATCAGAGTGTT............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGCGTTC............................................................................................ 24 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGTGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTTTTC............................................................................................ 24 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGATACATATCAGAGTGTTC............................................................................................ 23 2 1 1.00 1 1 0 0 0 0
..................................................ACAACGTACATATCAGAGTGTTTCC.......................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTAGATATCAGAGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTTTC......................................................................................... 26 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGTTACATATCAGAGTTTTTC........................................................................................... 25 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTTTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
......................................................GGTACATATCAGAGTGTTTC........................................................................................... 20 0 1 1.00 1 0 0 0 1 0
.................................................AACAAGGTACATATCTGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTATATATCAGAGTGTT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTGCATATCAGAGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTGCATATCAGAGTGTTTT........................................................................................... 25 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGATACATATCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTCTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGTGTTTC............................................................................................. 23 3 1 1.00 1 1 0 0 0 0
..................................................ACAAGTTACATATCAGAGTGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
.................................................AAAAAGGTACATATCAGAGTGTTTCTCC........................................................................................ 28 3 1 1.00 1 1 0 0 0 0
...........................................................................................AACCTCTGTATATACCTTTCATT................................................... 23 0 1 1.00 1 0 0 0 1 0
....................................................AAGGTACATATCAGAGTGT.............................................................................................. 19 0 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCTCTC....................................................................................... 28 3 1 1.00 1 1 0 0 0 0
..................................................AGAAGGTACATATCAGAGTTTTT............................................................................................ 23 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTATTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTTCTC........................................................................................ 27 3 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACGTATCAGAGTGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATTAGAGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGGACATATCAGAGTGTTTCA.......................................................................................... 25 2 1 1.00 1 1 0 0 0 0
....................................................AAGGTACATATCAGAGTGTTT............................................................................................ 21 0 1 1.00 1 1 0 0 0 0
..................................................AAAAGCTACATATCAGAGTGTTTCC.......................................................................................... 25 2 1 1.00 1 0 1 0 0 0
.................................................AACAAGGTACATATCAGAGCGTTTCC.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTCCT......................................................................................... 27 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGGACATTTCAGAGTGTTT............................................................................................ 24 2 1 1.00 1 0 1 0 0 0
.................................................AACAAGGAACATATCAGAGTGT.............................................................................................. 22 1 1 1.00 1 0 0 0 1 0
.................................................AACACGGTACATATCAGAGTGT.............................................................................................. 22 1 1 1.00 1 0 1 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTTCA......................................................................................... 26 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTAAATATCAGGTTGTTTC........................................................................................... 24 3 1 1.00 1 0 0 0 1 0
..................................................ACAACGTACATATCAGAGTGATTC........................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ACAACGTACATATCAGAGGGTTTC........................................................................................... 24 2 1 1.00 1 0 0 1 0 0
...................................................CAAGGTACATATCAGAGTGTTTCCC......................................................................................... 25 0 1 1.00 1 0 0 0 1 0
.................................................AACAAGGTACATATCAGAGTCTT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGCACATATCAGAGTGTTTCC.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTTTC............................................................................................. 22 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTAC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................................AGCAAGGTACATATCAGAGTGTT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0
..................................................AAAAGGTACATCTCAGAGTGGTTC........................................................................................... 24 3 1 1.00 1 0 1 0 0 0
..................................................ACAAGCTACATATCAGAGTGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ACCAGGTACATATCAGAGTGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGACTGTTTC........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATAACAGAGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGATTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCATAGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATACCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTTTT......................................................................................... 27 3 1 1.00 1 1 0 0 0 0
.................................................AACCAGGTACATATCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 0 0 1 0 0
.................................................AACAAGGTACATACCAGAGTGTTTCTC......................................................................................... 27 2 1 1.00 1 1 0 0 0 0
..............................................GATCACAAGGTACATATCAGAGTGTTTC........................................................................................... 28 3 1 1.00 1 1 0 0 0 0
.................................................AACAAGGAACATATCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
.................................................AACACGGTACATAGCAGAGT................................................................................................ 20 2 1 1.00 1 0 1 0 0 0
..................................................ACAAGGAACTTATCAGAGTGTTTC........................................................................................... 24 2 1 1.00 1 0 1 0 0 0
.................................................GACAAGGTACATATCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..................................................AAAAGGTACATATCAGAGTGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTCT............................................................................................ 24 1 1 1.00 1 0 1 0 0 0
.................................................AACGAGGTACATATCAGAGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGGGTTTCGC......................................................................................... 26 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCCGAGTGTTTC........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................TCAAGGTACATATCAGAGTGTT............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACAAATCAGAGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGCTACATATCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTAAATATCAGAGTGTTTCTC......................................................................................... 26 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTAGATATCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGGGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
...........................................................................................AACCTCTGTATATACCTTTCATC................................................... 23 1 1 1.00 1 1 0 0 0 0
................................................CTACAAGGTACATATCAGAGTGTTC............................................................................................ 25 3 1 1.00 1 1 0 0 0 0
.................................................AACAAGATACATATCAGAGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
........................................................TACATATCAGAGTGTTTCT.......................................................................................... 19 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATTTCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 0 1 0 0 0
............................................................................................ACCTCTGTATATACCTTTCATTC.................................................. 23 1 1 1.00 1 0 0 0 1 0
.................................................AACAAGGTACATATCAGGGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATAACAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATGAGAGTGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................................AGTGTTTCCCGTATTCGAGTTTTGA.......................................................................... 25 0 1 1.00 1 1 0 0 0 0
..................................................ACAAGGGACATATCAGAGTGTTC............................................................................................ 23 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTTT.............................................................................................. 21 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGGACATATTAGAGTGTTT............................................................................................ 24 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATGTCAGAGTGTTTCT.......................................................................................... 25 2 1 1.00 1 0 1 0 0 0
.................................................AACAAGGTACGTATCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGGGTTTCC.......................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACTTATCATAGTTTTT............................................................................................ 23 3 1 1.00 1 0 1 0 0 0
.................................................AACAACGTACATATCAGAGTGTTTC........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATACCAGAGTGTTTC........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGATACATATCAGAGTGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTAC.......................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGAACATACCAGAGTGTTTC........................................................................................... 24 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTTCATATCAGAGTGTTTC........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.......................................................GTACATATCAGAGTGTTC............................................................................................ 18 1 1 1.00 1 1 0 0 0 0
.................................................AACATGGTACATATCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 0 0 0 0 1
.................................................AACAAGGTACATATCTGAGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................ACACGGTACGTATCAGAGTGTTTC........................................................................................... 24 2 1 1.00 1 0 1 0 0 0
.................................................AACAACGGACATATCAGCGTGTTT............................................................................................ 24 3 1 1.00 1 0 0 1 0 0
..................................................ACAAGGTGCATATCAGAGTGTT............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGAACATATCAGCTTGTTTC........................................................................................... 24 3 1 1.00 1 0 1 0 0 0
.................................................AACAAGGTACATATTAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
.................................................AATAAGGTACATATCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGGACATATCAGAGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGCGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGGACATATCAGAGCGTTTC........................................................................................... 25 2 1 1.00 1 0 1 0 0 0
.................................................AACAAGGTACACATCAAAGTGCT............................................................................................. 23 3 1 1.00 1 0 1 0 0 0
..................................................ACAAGGTACATATCAGAGTGATC............................................................................................ 23 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATTTCAGAGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................TCAAGGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGCACATATCAGAGTGTTTT........................................................................................... 24 2 1 1.00 1 0 1 0 0 0
.................................................AACAAGGTACATCTCAGAGTGTTTC........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGCACATATCAGAGTGTTTCTC......................................................................................... 26 2 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGATTGTTTC........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCAGAGTGTTTA........................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.................................................AACAAGGTACATATCACAGTGT.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAATGTTT............................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTAAATATCAGAGTGTTTCA.......................................................................................... 25 2 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTGTTTCCTCC....................................................................................... 28 3 1 1.00 1 0 1 0 0 0
..................................................ACAAGGTACATATCATAGTGATTC........................................................................................... 24 2 1 1.00 1 0 1 0 0 0
.................................................AACAGGGTACATATCAGAGTGTTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTACATATCAGAGTCTTTT........................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ACCAGGTACATATCAGAGTGTTTC........................................................................................... 24 1 1 1.00 1 1 0 0 0 0

Anti-sense strand reads

AGCCCAATTGAAACCGTTAACCTCACGCGTGACTTAGCCAGATTAGATTTTGTTCCATGTATAGTCTCACAAAGGGCATAAGCTCAAAACTTTGGAGACATATATGGAAAGTAATCTAAGTTGGCTTTCAGGTATTTATAACTATATACTACTACTAAAAGGTTA

************************************(((((..(((((((...((((((.(((.(((((.(((((...............))))))))))))).))))))...)))))))..)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V041

embryo

 V110

male body
...........................CGTGACTAAGCCAGTTTAG....................................................................................................................... 19 2 3 0.33 1 1 0
...................................................................................................................CTACGGTGGCTGTCAGGTAT.............................. 20 3 3 0.33 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6500:14019342-14019506 + dmo_12 confident TCGGGT---TA--AC---------TTTGGCAATTGGAGTGCGCACTGAA-------------TCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATT-CAACCGA--AAGTCCA-TAA------ATA------T-TGAT-----ATATGATGATGATT-TTCCAAT
droVir3 scaffold_12963:3616326-3616473 + dvi-mir-963 Known_mirbase TGGAGT---TAATGT----------------------------ACGGATG--GGCATAAACAACAATCTAATCTGAAACAAGGTACATATCAGAGTGTTTCTTAAATTTGATTATTGAAACCTCTGTATATACCTTTCATTGGATT-AAACTGA--TAAGCAC-ATGT-----TTCAA-A-AG-TT----------------------TTCATAT
droGri2 scaffold_15252:3148159-3148305 + dgr_53 confident GAAAGT---GA--AC---------AGTGAACATAACAAAG--------CAAAAT-------AACAGTCTAATCCAAAACAAGGTACATATTAGAGCGTTTCCTATCTTTGAGTATTGAAACCTCTGTATATACCTTCAT-TCGATT-CGACTGA--TAATCTC-ATT----------A-A-AA-T---------------------CATTTCAGT
droWil2 scf2_1100000004521:8625040-8625209 - dwi_93 confident TCA----------TTATTAATCATAGTTAATTGAGTTA-----ATTG---AATT-------CTAATTCTAGTCTAAAACAAGGTACATATCAGGTTGTTTCGTATATTTGAAGCCTGAAACATCTGTATCTACCTTTGTTTCGAATAGGACTAA--AGAGTTTTCTTTAAGCCCAACA-C-AT-TT---------G-----TTGTCTGTGTCA-G
droAna3 scaffold_12916:11085422-11085568 + dan_98 confident TCA-TTAATTA--GT----------------------------TAAAAAGTGTT-------CTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATT-AAACTAA--AGAGCTA-CTA------AGAAT-A-CG-AGT--GTT----------C-----GCGGGAT
droBip1 scf7180000396572:743193-743326 + TCTGG---------T----------------------------TCAAATATGTT-------CTTGATTTAATCTAAAACAAGGTACATATCGGG-TGTTTCCTGCATTTTAAGATTGAAACATCTGTATCTACCTTTGTTTCGATT-TAACTAA--AGAGCTA-CAC------AGATA-A-AAGT------------------------GTTCAT
droKik1 scf7180000302389:430288-430433 - TGG------------------------------------------------GTC-------ATCAGTGCAGTCTAGAACAAGGTACATATCAGG-TGTTTCCTGCATTCGAAAATCGAAACATCTGTATCTACCTTAGTTTCGAAT-GGACTCA--AAAGCAA-CTCTAACC-CACAA-G-AG-TT-----TGAGGTGGAAAAGGTAATTCAGAC
droFic1 scf7180000453932:196576-196716 - CC-------------------------------------------TCACTCGCT-------TTTAATCTAATCTAAAACAAGGTATTTATCAGGTTGTTTCCTATATTCGAAGTTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGCGCAA-CGCCACT--CTAATTAAAA-T-----------------AATCAGTCCCAGT
droEle1 scf7180000490753:31570-31723 + AGTGGGAAAGA--GT----------------------------ACTGAATGGTT-------CTCCATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATGATCGATGATTGAAACATCTGTATCTACCTCTGTTTCGAAT-GGACAAA--AGGCCAG-CTC------CAACA-A-AG-TAACTATCG------TTTT-----GTCAAAT
droRho1 scf7180000778253:32520-32657 - GA----AATGA--GT----------------------------ACTGACTGGCT-------CTCGATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTCAACCGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGACCAA-CTC------CACCA-T-AA-T---------------------AA-AT-TAT
droBia1 scf7180000302422:3831645-3831793 + GTA-CTTAGCA--CT----------------------------ACTGACTTGTT-------CTTAATCTAATCTAAAACAAGGTACATATCAGCTTGTTTCCTATATTTGAAGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACATA--AGAGCAA-CTT------CTCAA-T-AG-CTAT---GCATG------------CTGCAAT
droTak1 scf7180000415871:386332-386485 + TA-----ATAA--GC----------------------------ACTGACTTGTT-------CTTAATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATTTTCGACGGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAAAAAGAGCAA-CTC------CTCCT-A-AG-TTAT---GCATGCTATTGC-----GCCAAAT
droEug1 scf7180000409063:318317-318465 + TA-----CTGA--GT----------------------------AGTGACTTGTT-------CTTCTTCTAATCTAGAACAAGGTATATATCAGATTGTTTCCTATATTCGACGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGAGCAC-C-C------CTCGA-A-AG-TAAT-ACTCGAG---------CAATACCAGT
dm3 chr2L:5641966-5642105 + dme-mir-963 Known_mirbase TATGGCAATTA--CA----------------------------ACTA-ATTTTT-------CTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTCGA---TCGAAACATCTGTATATACCTTTGTTCCGATT-GGACAAA--AGTGCGT-CTT------CTAGT-T-GG-TGA---------------------TACCAAT
droSim2 2l:5446700-5446854 + dsi-mir-963 Known_mirbase TG--GCAATTA--CT----------------------------ACTGATT--TT-------CTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TCGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCAT-CTT------CTAGT-G-GG-TAA--ATCCATGTGGTTATGACAA-GTCAAT
droSec2 scaffold_5:3719686-3719841 + dse_67 confident TG--GCAATTA--CT----------------------------ACTGAT-TTTT-------CTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TAGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCAT-CTT------CTAGT-G-GG-TAA--ATCCATGTGGTTATGATAA-GTCAAT
droYak3 2L:13551169-13551315 - dya_63 confident GTG-GGTATCA--CT----------------------------ACTGCATTGTT-------CTTGGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCAT-CTT------CAAGT-------TAT-ATCC----T---AT-----GATCAAT
droEre2 scaffold_4929:5730367-5730506 + der_232 confident TC--------A--GT----------------------------GCTG-CTTGTT-------CTTAGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTGTATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCAT-CTT------CTAGT-T-GG-TTAC-ATCC---------------TTGCGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCGGGT---TA--AC---------TTTGGCAATTGGAGTGCGCACTGAA-------------TCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATT-CAACCGA--AAGTCCA-TAA------ATA------T-TGAT-----ATATGATGATGATT-TTCCAATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............................................................................ACAAGGTACATATCAGAGTGTTTC..................................................................................................................2417545.00754560549517389
............................................................................AACAAGGTACATATCAGAGTGTTTC..................................................................................................................2513143.0031431061813117
............................................................................AACAAGGTACATATCAGAGTGTTT...................................................................................................................2411495.00149590182901439
.............................................................................ACAAGGTACATATCAGAGTGTTT...................................................................................................................231974.00974604190945
............................................................................AACAAGGTACATATCAGAGTGT.....................................................................................................................221522.0052200170514
.............................................................................ACAAGGTACATATCAGAGTGTTTCC.................................................................................................................251294.0029410150287
............................................................................AACAAGGTACATATCAGAGTGTT....................................................................................................................231236.0023610130231
............................................................................AACAAGGTACATATCAGAGTGTTTCC.................................................................................................................261177.0017700000177
.............................................................................ACAAGGTACATATCAGAGTGTT....................................................................................................................221144.0014400030141
.............................................................................ACAAGGTACATATCAGAGTGTTC...................................................................................................................23173.00730010072
............................................................................AACAAGGTACATATCAGAGTGTTTT..................................................................................................................25159.00590000059
............................................................................AACAAGGTACATATCAGAGTGTTC...................................................................................................................24158.00580000058
.............................................................................ACAAGGTACATATCAGAGTGTTTCT.................................................................................................................25151.00510001050
............................................................................AACAAGGTACATATCAGAGTGTTTCT.................................................................................................................26136.00360000036
.............................................................................ACAAGGTACATATCAGAGTGTTTCA.................................................................................................................25122.00220002020
.............................................................................ACAAGGTACATATCAGAGTGTTTT..................................................................................................................24121.00210010020
............................................................................AACAAGGTACATATCAGAGTG......................................................................................................................21116.00161000015
............................................................................AACAAGGTACATATCAGAGTGTTTCCC................................................................................................................27115.00150000015
............................................................................AACAAGGTACATATCAGAGTGTTTCA.................................................................................................................26114.00140000014
............................................................................AACAAGGTACATATCAGAGTGTTTTT.................................................................................................................26113.00130000013
.............................................................................ACAAGGTACATATCAGAGTGTTTCCC................................................................................................................26112.00120000012
..............................................................................CAAGGTACATATCAGAGTGTTTC..................................................................................................................23112.00121001010
.............................................................................ACAAGGTACATATCAGAGTGT.....................................................................................................................2119.009000009
.............................................................................ACAAGGTACATATCAGAGTGTTTA..................................................................................................................2419.009000009
..............................................................................CAAGGTACATATCAGAGTGTTT...................................................................................................................2213.003000003
.............................................................................ACAAGGTACATATCAGAGTGTTTCCCC...............................................................................................................2713.003000003
............................................................................AACAAGGTACATATCAGAGTGTTCT..................................................................................................................2513.003000003
.............................................................................ACAAGGTACATATCAGAGT.......................................................................................................................1912.002000002
.............................................................................ACAAGGTACATATCAGAGTG......................................................................................................................2012.002000002
..................................................................................GTACATATCAGAGTGTTTC..................................................................................................................1912.002000002
.......................................................................................................................ACCTCTGTATATACCTTTCATT..........................................................................2212.002100001
.............................................................................ACAAGGTACATATCAGAGTGTTCT..................................................................................................................2412.002000002
............................................................................AACAAGGTACATATCAGAGT.......................................................................................................................2012.002000002
.............................................................................ACAAGGTACATATCAGAGTGTTTTT.................................................................................................................2512.002000002
............................................................................AACAAGGTACATATCAGAGTGTC....................................................................................................................2312.002000002
.............................................................................ACAAGGTACATATCAGAGTGTC....................................................................................................................2212.002000002
............................................................................AACAAGGTACATATCAGAGTGTTTCCCC...............................................................................................................2812.002000002
.............................................................................ACAAGGTACATATCAGAGTGTTTCCA................................................................................................................2611.001000001
..............................................................................CAAGGTACATATCAGAGTGTTC...................................................................................................................2211.001000001
............................................................................AACAAGGTACATATCAGAGTGTTTG..................................................................................................................2511.001000001
...............................................................................AAGGTACATATCAGAGTGTTTC..................................................................................................................2211.001000001
.............................................................................ACAAGGTACATATCAGAGTGTTG...................................................................................................................2311.001000001
............................................................................AACAAGGTACATATCAGAGTGA.....................................................................................................................2211.001000001
.............................................................................ACAAGGTACATATCAGAGTGTTTCATT...............................................................................................................2711.001000001
.................................................................................GGTACATATCAGAGTGTTTC..................................................................................................................2011.001100000
.............................................................................ACAAGGTACATATCAGAGTGTTTG..................................................................................................................2411.001000001
......................................................................................................................AACCTCTGTATATACCTTTCATT..........................................................................2311.001100000
...............................................................................AAGGTACATATCAGAGTGT.....................................................................................................................1911.001000001
...............................................................................AAGGTACATATCAGAGTGTTT...................................................................................................................2111.001000001
............................................................................AACAAGGTACATATCAGAGTGTTTCCT................................................................................................................2711.001000001
..............................................................................CAAGGTACATATCAGAGTGTTTCCC................................................................................................................2511.001100000
............................................................................AACAAGGTACATATCAGAGTGTTTTTT................................................................................................................2711.001000001
......................................................................................................................AACCTCTGTATATACCTTTCATC..........................................................................2311.001000001
...................................................................................TACATATCAGAGTGTTTCT.................................................................................................................1911.001000001
.......................................................................................................................ACCTCTGTATATACCTTTCATTC.........................................................................2311.001100000
.............................................................................................AGTGTTTCCCGTATTCGAGTTTTGA.................................................................................................2511.001000001
..................................................................................GTACATATCAGAGTGTTC...................................................................................................................1811.001000001
............................................................................AACAAGGTACATATCAGAGTGTTTA..................................................................................................................2511.001000001
.............................................................................ACAAGGTACATATCAGAGTGTTTCCTCC..............................................................................................................2811.001000100
droVir3
TGGAGT---TAATGT----------------------------ACGGATG--GGCATAAACAACAATCTAATCTGAAACAAGGTACATATCAGAGTGTTTCTTAAATTTGATTATTGAAACCTCTGTATATACCTTTCATTGGATT-AAACTGA--TAAGCAC-ATGT-----TTCAA-A-AG-TT----------------------TTCATATSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................AACAAGGTACATATCAGAGTGTTT...................................................................................................................24175701.00757017075499364399677202374730813421914160521774957481189416820125873819137292563520609172680000000000000000210525213508100001141228800000
............................................................................AACAAGGTACATATCAGAGTGTTTC..................................................................................................................25117368.00173681010028103915934352775310000000013934222611161725041904713237701332000022148200000000000000010101170600000023312100000
............................................................................AACAAGGTACATATCAGAGTGTTTCC.................................................................................................................26115595.001559510110231329172161331300010003017154015168215791540928294301623100020163900000000000000000000083210000000100000000
............................................................................AACAAGGTACATATCAGAGTGTTC...................................................................................................................24113609.0013609101002010358524215641020001101214001930881706173054917610124000008141100000000000000000100067030100004112100000
............................................................................AACAAGGTACATATCAGAGTGT.....................................................................................................................2219406.009406405913338426109319809314000100572003915204131148717486521851157352233208740000000000000000010535000924000126142121610000
............................................................................AACAAGGTACATATCAGAGTGTT....................................................................................................................2315659.005659001101518410246334100022017013571024315331711741137220873041210111334900000000000000000000617702400043405000000
............................................................................AACAAGGTACATATCAGAGTGTTTCCC................................................................................................................2715609.005609006044066018600002000204682030035407571557158706870000369700000000000000000000010600000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTCCCC...............................................................................................................2811772.001772004031222004000000002017000020098167313716077000022170000000000000000000002400200000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTT..................................................................................................................251709.0070900102212360390003110100320100157147123319405300007630000000000000000000223400000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTTCC................................................................................................................271708.0070800000261004300000000002600010011151434518204000004510000000000000000000003000000000000000000
.............................................................................ACAAGGTACATATCAGAGTGTTTC..................................................................................................................241640.0064000204442613126000000000037001002310968117302700001510000000000000000000001500000000000000000
............................................................................AACAAGGTACATATCAGAGTG......................................................................................................................211623.00623203001009010000000000041001404310386471660290010067000000000000000000001900200056614300000
.............................................................................ACAAGGTACATATCAGAGTGTTT...................................................................................................................231603.00603006012911002100000000004511301201351192910504100001350000000000000000000001700000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTTC.................................................................................................................261522.005220000121100900000000000350000122102102237502100000290000000000000000000001700000000000000000
.............................................................................ACAAGGTACATATCAGAGTGTTTCC.................................................................................................................251472.0047200101310105100000000106000001006646268003800001570000000000000000000001100000000000000000
.......................................................................................................................ACCTCTGTATATACCTTTCATT..........................................................................221222.0022210100001000000000000000000017354214500000002000000000000000000000001200013823200010
............................................................................AACAAGGTACATATCAGAGT.......................................................................................................................201196.001960000071001000000000025002000034276250250000040000000000000000000000300000000000000000
............................................................................AACAAGGTACATATCAGAGTGTC....................................................................................................................231179.001790000027011180000000000180000000121771901800000220000000000000000000001800000000001000000
............................................................................AACAAGGTACATATCAGAGTGTTTCT.................................................................................................................261176.001760000130601000000000005000000142372030080000011000000000000000000000200000000000000000
............................................................................AACAAGGTACATATCAGAGTGTCC...................................................................................................................241146.0014600001230001000000000002300000006821801900001250000000000000000000001000000000000000000
.............................................................................ACAAGGTACATATCAGAGTGTTTCCC................................................................................................................261143.0014300000100003000000000015000000014176360260000016000000000000000000000000000000000000000
.............................................................................ACAAGGTACATATCAGAGTGTTC...................................................................................................................231126.0012600000800018000000000025000000010105190120000015000000000000000000000400000000000000000
..............................................................................CAAGGTACATATCAGAGTGTTT...................................................................................................................221103.00103000000010300000000009000000020233160100000011000000000000000000000700000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTCA.................................................................................................................261103.001030000120002000000000011000011017131117070100111000000000000000000000400300000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTCCCT...............................................................................................................28199.009900000100000000000000200000001817134401000003000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTCT..................................................................................................................25194.0094000009000900000000007000001215103120110000011000000000000000000000400000000000000000
..................................................................................GTACATATCAGAGTGTTT...................................................................................................................18188.008800102501020000000000160000000620220110000020000000000000000000000000000000000000000
................................................................................AGGTACATATCAGAGTGTTTCC.................................................................................................................22183.008300000600028100000000017000000001010160000013000000000000000000000000000000000000000
.................................................................................GGTACATATCAGAGTGTTT...................................................................................................................19169.006900000110004000000000018000000044010100000017000000000000000000000000000000000000000
......................................................................................................................AACCTCTGTATATACCTTTCATT..........................................................................23164.006410100000000000000100000000013277800000001000000000000000000000100300000001000000
...............................................................................AAGGTACATATCAGAGTGTTT...................................................................................................................21164.006400001304020000000000200001001284909000008000000000000000000000100000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTCTCC...............................................................................................................28162.0062000000000000000000000000000087102203000005000000000000000000000700000000000000000
..................................................................................GTACATATCAGAGTGTTTC..................................................................................................................19160.006000000507027000000000060000000041004000006000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTA..................................................................................................................25152.005200000202020000000000300000107541008001014000000000000000000000200000000000000000
.............................................................................ACAAGGTACATATCAGAGTGTT....................................................................................................................22149.004900200101240000000000400000007341002000006000000000000000000000300000000000000000
.............................................................................ACAAGGTACATATCAGAGTGTTTCCCC...............................................................................................................27146.004600000700000000000000600000002271305000004000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTCTC................................................................................................................27145.004500000200010000000000000000008821007000005000000000000000000000200000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTA...................................................................................................................24142.00420020000002000000000030010024414604101014000000000000000000000200000000000000000
......................................................................................................................AACCTCTGTATATACCTTTCATC..........................................................................23134.003400000000000000000000000000009641200000002000000000000000001000000000000000000000
.......................................................................................................................ACCTCTGTATATACCTTTCATTC.........................................................................23133.003300000000000000000000000002004931500000000000000000000000000000000000000000000000
...................................................................................TACATATCAGAGTGTTTCC.................................................................................................................19133.0033000003000000000000001100000000000010000009000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTCA..................................................................................................................25132.00320000000001000000000030000001922203000007000000000000000000000200000000000000000
................................................................................AGGTACATATCAGAGTGTTT...................................................................................................................20132.00320000050102000000000050000000130205000008000000000000000000000000000000000000000
...............................................................................AAGGTACATATCAGAGTGTTTCC.................................................................................................................23126.00260000010008000000000010000000211702000002000000000000000000000100000000000000000
..................................................................................GTACATATCAGAGTGTTC...................................................................................................................18226.0052000004000270000000000200000001000013000005000000000000000000000000000000000000000
.......................................................................................................................ACCTCTGTATATACCTTTCATC..........................................................................22126.00260000000000000000000000000000652501000002000000000000000000000000000012200000000
............................................................................AACAAGGTACATATCAGAG........................................................................................................................19124.00240000200000000000000060000000612501000001000000000000000000000000000000000000000
..............................................................................CAAGGTACATATCAGAGTGTTTC..................................................................................................................23124.00240000000104000000000040000010222303000001000000000000000000000100000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTG..................................................................................................................25123.00230000100001000000000010000020550301000003000000000000000000000100000000000000000
...............................................................................AAGGTACATATCAGAGTGTTTC..................................................................................................................22123.00230000011412000000000000000000612201000002000000000000000000000000000000000000000
......................................................................................................................AACCTCTGTATATACCTTTCAT...........................................................................22123.00230000000000000000000000001000571500000000000000000000000000000000000001002010000
...............................................................................AAGGTACATATCAGAGTGTTC...................................................................................................................21119.00190000080005000000000040000000000001000001000000000000000000000000000000000000000
..............................................................................CAAGGTACATATCAGAGTGTTTCC.................................................................................................................24119.00190000040001000000000040000000060101000002000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGA.........................................................................................................................18119.00190010010000000000000020000010544100000000000000000000000000000000000000000000000
.............................................................................ACAAGGTACATATCAGAGTGT.....................................................................................................................21118.00180040000000000000000000000000322600000010000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTCCA................................................................................................................27118.00180000020000000000000000000000613302000001000000000000000000000000000000000000000
.......................................................................................................................ACCTCTGTATATACCTTTCAT...........................................................................21117.00170000000000000000000000000000742000000000000000000000000000000000000040000000000
......................................................................................................................AACCTCTGTATATACCTTTCATTC.........................................................................24116.00160000000000000000000000000000255400000000000000000000000000000000000000000000000
................................................................................AGGTACATATCAGAGTGTTC...................................................................................................................20214.00280000061007100000000020000000111002000006000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTCG.................................................................................................................26113.00130000030000000000000010000000222201000000000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGC.....................................................................................................................22113.00130000000002000000000020000010120100000004000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTT......................................................................................................................21113.00130000000000000000000070000000001005000000000000000000000000000000000000000000000
...................................................................................TACATATCAGAGTGTTTC..................................................................................................................18112.00120000010103000000000040000000000000000003000000000000000000000000000000000000000
................................................................................AGGTACATATCAGAGTGTTTC..................................................................................................................21112.00120000120003000000000010000000000002000003000000000000000000000000000000000000000
..................................................................................GTACATATCAGAGTGTTTCC.................................................................................................................20112.00120000020004000000000020000000020001000001000000000000000000000000000000000000000
................................................................................AGGTACATATCAGAGTGTTTCCC................................................................................................................23112.00120000010003000000000020000000000101000003000000000000000000000100000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTAA..................................................................................................................25111.00110010000000000000000000010122000000004000000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTCTC.................................................................................................................26111.00110000000000000000000010000000120301000001000000000000000000000200000000000000000
....................................................................................ACATATCAGAGTGTTTCC.................................................................................................................18110.00100000030001000000000010000000100101000002000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTG...................................................................................................................24110.00100000021001000000000010000000020101001000000000000000000000000000000000000000000
.................................................................................GGTACATATCAGAGTGTT....................................................................................................................18110.00100000000001000000000030000000100103000001000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTTAA.................................................................................................................2619.0090000000000000100000000000010010101002020000000000000000000000000000000000000000
...................................................................................TACATATCAGAGTGTTTCCCC...............................................................................................................2138.67260000060000000000000040000000000008000008000000000000000000000000000000000000000
...................................................................................TACATATCAGAGTGTTTCCC................................................................................................................2028.50170000020000000000000030000000100003000008000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGG.....................................................................................................................2218.0081000010000000000000000000000000001000001000000000000000000000100000000011100000
.............................................................................ACAAGGTACATATCAGAGTGTTTCT.................................................................................................................2518.0080000000000000000000000000000300302000000000000000000000000000000000000000000000
................................................................................AGGTACATATCAGAGTGT.....................................................................................................................1817.0070000000000000000000030000000010001000002000000000000000000000000000000000000000
............................................................................AACAAGGTACATATCAGAGTGTTAAA.................................................................................................................2617.0070000000000000000000000000011000000003020000000000000000000000000000000000000000
...............................................................................AAGGTACATATCAGAGTGTT....................................................................................................................2017.0070000000100000000000020000000010002000001000000000000000000000000000000000000000
..............................................................................CAAGGTACATATCAGAGTGTTC...................................................................................................................2216.0060000010003000000000000000000100000000000000000000000000000000100000000000000000
droGri2
GAAAGT---GA--AC---------AGTGAACATAACAAAG--------CAAAAT-------AACAGTCTAATCCAAAACAAGGTACATATTAGAGCGTTTCCTATCTTTGAGTATTGAAACCTCTGTATATACCTTCAT-TCGATT-CGACTGA--TAATCTC-ATT----------A-A-AA-T---------------------CATTTCAGTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................AACAAGGTACATATTAGAGCGTTTC..................................................................................................................25139.0039138
............................................................................AACAAGGTACATATTAGAGCGTTT...................................................................................................................24120.0020713
............................................................................AACAAGGTACATATTAGAGCGT.....................................................................................................................22119.0019118
............................................................................AACAAGGTACATATTAGAGCGTT....................................................................................................................23114.0014311
............................................................................AACAAGGTACATATTAGAGCGTTTCT.................................................................................................................2617.00707
............................................................................AACAAGGTACATATTAGAGCGC.....................................................................................................................2211.00101
............................................................................AACAAGGTACATATTAGAGCG......................................................................................................................2111.00110
......................................................................................................................AACCTCTGTATATACCTTCAT-...........................................................................2111.00110
.............................................................................ACAAGGTACATATTAGAGCGTTTC..................................................................................................................2411.00101
........................................................................................................................CCTCTGTATATACCTTCAT-T..........................................................................2011.00110
............................................................................AACAAGGTACATATTAGAGCGTTTT..................................................................................................................2511.00101
......................................................................................................................AACCTCTGTATATACCTTCAT-T..........................................................................2211.00110
.............................................................................ACAAGGTACATATTAGAGCGTTTCA.................................................................................................................2511.00101
.......................................................................................................................ACCTCTGTATATACCTTCAT-T..........................................................................2111.00110
droWil2
TCA----------TTATTAATCATAGTTAATTGAGTTA-----ATTG---AATT-------CTAATTCTAGTCTAAAACAAGGTACATATCAGGTTGTTTCGTATATTTGAAGCCTGAAACATCTGTATCTACCTTTGTTTCGAATAGGACTAA--AGAGTTTTCTTTAAGCCCAACA-C-AT-TT---------G-----TTGTCTGTGTCA-GSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.............................................................................ACAAGGTACATATCAGGTTGTT....................................................................................................................22127.0027311904
............................................................................AACAAGGTACATATCAGGTTGT.....................................................................................................................22126.0026511811
............................................................................AACAAGGTACATATCAGGTTGTT....................................................................................................................23113.001320704
.............................................................................ACAAGGTACATATCAGGTTGTTT...................................................................................................................2318.00841300
............................................................................AACAAGGTACATATCAGGTTGTTT...................................................................................................................2416.00601320
.......................................................................................................................ACATCTGTATCTACCTTTGTTTT.........................................................................2313.00302100
............................................................................AACAAGGTACATATCAGGTTG......................................................................................................................2113.00300210
.......................................................................................................................ACATCTGTATCTACCTTTGTTT..........................................................................2213.00301101
.............................................................................ACAAGGTACATATCAGGTTGT.....................................................................................................................2112.00200200
.............................................................................ACAAGGTACATATCAGGTTGTTTC..................................................................................................................2412.00200011
............................................................................AACAAGGTACATATCAGGTTGC.....................................................................................................................2211.00100100
.......................................................................................................................ACATCTGTATCTACCTTTGTT...........................................................................2111.00100100
......................................................................................................................AACATCTGTATCTACCTTTGT............................................................................2111.00100100
.............................................................................ACAAGGTACATATCAGGTTGTTC...................................................................................................................2311.00100100
.............................................................................ACAAGGTACATATCAGGTTG......................................................................................................................2011.00100001
..............................................................................CAAGGTACATATCAGGTTGTT....................................................................................................................2111.00101000
...............................................................................AAGGTACATATCAGGTTGTTT...................................................................................................................2111.00100010
.............................................................................ACAAGGTACATATCAGGTTGTTTCA.................................................................................................................2511.00100010
droAna3
TCA-TTAATTA--GT----------------------------TAAAAAGTGTT-------CTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATT-AAACTAA--AGAGCTA-CTA------AGAAT-A-CG-AGT--GTT----------C-----GCGGGATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.............................................................................ACAAGGTACATATCTGGTTGTT....................................................................................................................22112.0012200352
.............................................................................ACAAGGTACATATCTGGTTGTTTC..................................................................................................................2417.007110023
.............................................................................ACAAGGTACATATCTGGTTGTTT...................................................................................................................2317.007000160
............................................................................AACAAGGTACATATCTGGTTGTTT...................................................................................................................2416.006200211
......................................................................................................................AACATCTGTATCTACCTTTGT............................................................................2116.006100122
.............................................................................ACAAGGTACATATCTGGTTGT.....................................................................................................................2115.005100040
............................................................................AACAAGGTACATATCTGGTTGT.....................................................................................................................2215.005100040
......................................................................................................................AACATCTGTATCTACCTTTGTTT..........................................................................2313.003300000
......................................................................................................................AACATCTGTATCTACCTTTGTT...........................................................................2213.003300000
.......................................................................................................................ACATCTGTATCTACCTTTGTTTT.........................................................................2313.003300000
......................................................................................................................AACATCTGTATCTACCTTTG.............................................................................2011.001000001
............................................................................AACAAGGTACATATCTGGTT.......................................................................................................................2011.001100000
............................................................................AACAAGGTACATATCTGGTTGTT....................................................................................................................2311.001100000
droBip1
TCTGG---------T----------------------------TCAAATATGTT-------CTTGATTTAATCTAAAACAAGGTACATATCGGG-TGTTTCCTGCATTTTAAGATTGAAACATCTGTATCTACCTTTGTTTCGATT-TAACTAA--AGAGCTA-CAC------AGATA-A-AAGT------------------------GTTCATSizeHit CountTotal NormTotal
No Reads
droKik1
TGG------------------------------------------------GTC-------ATCAGTGCAGTCTAGAACAAGGTACATATCAGG-TGTTTCCTGCATTCGAAAATCGAAACATCTGTATCTACCTTAGTTTCGAAT-GGACTCA--AAAGCAA-CTCTAACC-CACAA-G-AG-TT-----TGAGGTGGAAAAGGTAATTCAGACSizeHit CountTotal NormTotal
No Reads
droFic1
CC-------------------------------------------TCACTCGCT-------TTTAATCTAATCTAAAACAAGGTATTTATCAGGTTGTTTCCTATATTCGAAGTTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGCGCAA-CGCCACT--CTAATTAAAA-T-----------------AATCAGTCCCAGTSizeHit CountTotal NormTotal
No Reads
droEle1
AGTGGGAAAGA--GT----------------------------ACTGAATGGTT-------CTCCATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATGATCGATGATTGAAACATCTGTATCTACCTCTGTTTCGAAT-GGACAAA--AGGCCAG-CTC------CAACA-A-AG-TAACTATCG------TTTT-----GTCAAATSizeHit CountTotal NormTotal
No Reads
droRho1
GA----AATGA--GT----------------------------ACTGACTGGCT-------CTCGATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTCAACCGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGACCAA-CTC------CACCA-T-AA-T---------------------AA-AT-TATSizeHit CountTotal NormTotal
No Reads
droBia1
GTA-CTTAGCA--CT----------------------------ACTGACTTGTT-------CTTAATCTAATCTAAAACAAGGTACATATCAGCTTGTTTCCTATATTTGAAGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACATA--AGAGCAA-CTT------CTCAA-T-AG-CTAT---GCATG------------CTGCAATSizeHit CountTotal NormTotal
No Reads
droTak1
TA-----ATAA--GC----------------------------ACTGACTTGTT-------CTTAATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATTTTCGACGGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAAAAAGAGCAA-CTC------CTCCT-A-AG-TTAT---GCATGCTATTGC-----GCCAAATSizeHit CountTotal NormTotal
No Reads
droEug1
TA-----CTGA--GT----------------------------AGTGACTTGTT-------CTTCTTCTAATCTAGAACAAGGTATATATCAGATTGTTTCCTATATTCGACGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGAGCAC-C-C------CTCGA-A-AG-TAAT-ACTCGAG---------CAATACCAGTSizeHit CountTotal NormTotal
No Reads
dm3
TATGGCAATTA--CA----------------------------ACTA-ATTTTT-------CTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTCGA---TCGAAACATCTGTATATACCTTTGTTCCGATT-GGACAAA--AGTGCGT-CTT------CTAGT-T-GG-TGA---------------------TACCAATSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................................................ACAAGGTAAATATCAGGTTGTTTC..................................................................................................................2416266.006266001005000015400000000001700000000000312321962726212234189500010000000000000000000386101901200132190143737157006131215104118284182301540000000011000000000000000000031717520351525000000000002505000191600021000200342106182000570546000000211000000001442140994661775421723021213700000000010200121266031460000000000000000001005935922711390190001000003418100612254423144320014470000000000092984712124503400
.............................................................................ACAAGGTAAATATCAGGTTGTTT...................................................................................................................2315016.005016000004000009000000000014050000000000008200071100210183531000000000000000000000004534060000000310007824722049690020513061210290000301000000000000000000001021084103135140000080000049060003301010600000032762571300015405250000000600000000096006401812943142136081000000001001000002800200000000010100000010003819672663310201000000000110610121627115612871030034311000000000001015326623902010
.............................................................................ACAAGGTAAATATCAGGTTGTT....................................................................................................................2212059.0020590000000000020000000010338500000000000000000110014040122000000000000000000000001002000000000000013002100043400200407300340000000011000000000000000000004105701000000000000021010004000003000000172126230008801960000000100000000012511862791132122200000000000000010700300000000000000100000019106417017270000010000124100261419286374400024300000000000701422201900007
............................................................................AACAAGGTAAATATCAGGTTGTTT...................................................................................................................241634.006340000000000030000000000020000000000001000123010400040000000000000000000000000100105011000004103601170002000030410160001000000001000000000000000000000141260000000000000003007000711010400000001062591000220535000000000000000032001171180825160000000000000000010020000000000000000000001501050000000000000600000026332500040000000000000020000200000
.............................................................................ACAAGGTAAATATCAGGTTGT.....................................................................................................................211613.0061300000000000100000000000340000000000001000004000000000000000000000000000000000000000001000001007004000002000011111003000000000000000000000000000001100261200000000000000000000200000000001001838200001804800000000000000200321022161531010000000000000000000040000000000000000000007591104921000000010000130010121119216210011510000000000020103020900000
............................................................................AACAAGGTAAATATCAGGTTGTTTC..................................................................................................................251415.00415000000000006000000000000000000000001000021121022000110000000000000000000000000010000100000000230020001000000010300000000000000000000000000000010013203130050000000000000000000300000000000002002810001018000000130000000008250191011551931417000000000000000002900700000000000000000000041100020100000000000210002012154000010001000000000040000100000
............................................................................AACAAGGTAAATATCAGGTTGTT....................................................................................................................231351.00351000000000005000000000001800000000000010000100001000000000000000000000000000000220020000000000070070000110010030410040000000000000100000000000000000121000400000000000000000004000001000010256060000015062000000000000000001700031800020000000000000000000000000000000000000000000500020000000000100200001007231600111000000000000040200000010
............................................................................AACAAGGTAAATATCAGGTTGT.....................................................................................................................221127.001270000010000010000000000010000000000000000000000000001000000000000000000000000000000000000000000000400000000001000000300000000000000000000000000000111001000000000000000000000020000000000000110130000120150000000000000000011211000300000000000000000000000000000000000000000000000300030000000000000100000002141300002000000000001010000000000
.......................................................................................................................ACATCTGTATATACCTTTGTTCT.........................................................................231101.0010100000000000000000000000200000000000000000000000000000000000000000000000000000223201000000000002003000102000003031100001000000000000000000000000000000000000000000000000101000000000000000005090000002000000000000000000200351120035000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000
......................................................................................................................AACATCTGTATATACCTTTGTT...........................................................................22189.008900000000000000000000000100000000000000001000000000000000000000000000000000000651200000000000001000000300000000000000000000000000000000000000000000000100000000000000000000000000000000000021030000306000000000000000000200004232005000000000000000000000000000000000000000000030000000000000000000000000040000010000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTT..................................................................................................................24177.007700000000100100000000000000000000000000000030000000000000000000000000000000000000000000000001010000000030000000100000000000000000000000000000000000000000000000000000001000000010000000000090130000201000000000000000000010000060020000000000001000002001000000000000000000000130100010000000000010000100150200000000000000000000000000100
.............................................................................ACAAGGTAAATATCAGGTTG......................................................................................................................20176.0076000000000000000000000002000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000050150000100400000000000000000051000020000000000000000000001002000000000000000000000020000000000000000000000000112100010000000000000010000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTCT.................................................................................................................25170.007000000000000000000000000000000000000010010010000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000000000000000100000010000000000000000001000000000000030190000101400000000000000000020000020000000000000000000001000000000000000000000000060000000000000000000001000280000000000000000000010100000000
............................................................................AACAAGGTAAATATCAGGTTG......................................................................................................................21168.00680000000000000000000000023000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010011000000000000000000000000000000000000407000090800000000000000100150010010000000000000000000000000000000000000000000000010000000000000000000000000100000001000000000000000000000000
......................................................................................................................AACATCTGTATATACCTTTGTTT..........................................................................23167.006700000000000200000000000200000000000000000010000000000000000000000000000000008105110000000000000400000000000000006000000000000000000000000000000000000000000000000000000000100000000000000003001000000000000000000000000000000091101000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTCA.................................................................................................................25166.0066000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100700200009000000001000000000000000000000000000000000000000000000000000000000000000000000000000404000010100000000000000000010000000011000061000000000001000000000000000000000000000000010000000000031000000382100000000000000000020100200000
......................................................................................................................AACATCTGTATATACCTTTGT............................................................................21158.00580000000000000000000000000000000000000000000011100000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000010000200000000000000000002000010000000020120000000000000000000000000100044152014000000000000000000000000000000000000000000141001000000000000000000001020000010000000000000000000000000
...................................................................................TAAATATCAGGTTGTTTC..................................................................................................................18147.004700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010002100000000000000000000000000000000000020011000010400000000000000000020100000000000000000000000000000000000000000000000000020000000000000000000000000010000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTATC................................................................................................................26147.004700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................CAAGGTAAATATCAGGTTGTTTC..................................................................................................................23143.0043000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000100901700000000000004100400000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000001010221000000000000000000000000000000000000000000010100000000000000000000000030000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTA..................................................................................................................24134.00340000000000020000000000000000000000000000000000000000000000000000000000000000000002000000000000002000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001030000004000000000000000000100000000000000103000000000001000000000000000000000000020000000000000000000000000110000000000000000000000000000000
.......................................................................................................................ACATCTGTATATACCTTTGTTCC.........................................................................23134.0034000000000002000000000003000000000000000000000000000000000000000000000000000000000000000000100300200000000300001000000000000100000000000000000000000000000000000000000000000000000000000000101000000000000000000000000030011053011000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..............................................................................CAAGGTAAATATCAGGTTGTTT...................................................................................................................22127.0027000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000500100000000000003000000000000000000000000000000000000000000000000000000000000000100000000000101000000200000000000000000000000000013000000000000000000000000000000000000000000030000000000000000000000000030000000000000000000000000200000
..................................................................................GTAAATATCAGGTTGTTTC..................................................................................................................19124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004020000000000000000000000000200000000000000000000000000000000000000000000000000003120001000000000000000000000000000000000000000000000000000000
......................................................................................................................AACATCTGTATATACCTTTGTTC..........................................................................23118.0018000000000000000000000002000000000000000000000000000000000000000000000000000011100000000000000100000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000100000000000000000000000000000010080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AACATCTGTATATACCTTTGTTCT.........................................................................24114.0014000000000001000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001060002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTC...................................................................................................................23112.0012000000000102000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010100000000000000000000000000000
.......................................................................................................................ACATCTGTATATACCTTTGTTC..........................................................................22111.0011000000000000000000000001000000000000000000000000000000000000000000000000000000100100000000000200100000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTA...................................................................................................................2319.009000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
......................................................................................................................AACATCTGTATATACCTTTGTTATC........................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000063000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................CAAGGTAAATATCAGGTTGTT....................................................................................................................2118.008000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000
............................................................................AACAAGGTAAATATCAGGTTGTTTT..................................................................................................................2518.008000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000020000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000
............................................................................AACAAGGTAAATATCAGGTT.......................................................................................................................2018.008000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000
......................................................................................................................AACATCTGTATATACCTTTGTA...........................................................................2218.008000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000020000000000000000000000000000000000000001011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTG...................................................................................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000010200000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000010000000000000000000000000000000
...............................................................................AAGGTAAATATCAGGTTGTTTC..................................................................................................................2217.007000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGT........................................................................................................................1817.007000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000000000020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................................................AGGTAAATATCAGGTTGTTT...................................................................................................................2016.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000010000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTT.......................................................................................................................1916.006000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTG..................................................................................................................2415.005000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTC....................................................................................................................2215.005000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000
......................................................................................................................AACATCTGTATATACCTTTGTTCC.........................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................AAGGTAAATATCAGGTTGTTT...................................................................................................................2115.005000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTTC.....................................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGG.........................................................................................................................1714.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTCC.................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000
............................................................................AACAAGGTAAATATCAGGTTGA.....................................................................................................................2213.003000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................AAATATCAGGTTGTTTC..................................................................................................................1713.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ACATCTGTATATACCTTTGTTCCATC......................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AACATCTGTATATACCTTTGTTCATC.......................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AACATCTGTATATACCTTTG.............................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AACAAGGTAAATATCAGGTTGTTTCT.................................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ACATCTGTATATACCTTTGTTTT.........................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AACAAGGTAAATATCAGG.........................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GGTAAATATCAGGTTGTTT...................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTAA.................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTTT.................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droSim2
TG--GCAATTA--CT----------------------------ACTGATT--TT-------CTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TCGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCAT-CTT------CTAGT-G-GG-TAA--ATCCATGTGGTTATGACAA-GTCAATSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.............................................................................ACAAGGTAAATATCAGGTTGTTTC..................................................................................................................241766.007660997712809100022191464000
.............................................................................ACAAGGTAAATATCAGGTTGTTT...................................................................................................................231752.0075202003222203210800644000
.............................................................................ACAAGGTAAATATCAGGTTGTTTCC.................................................................................................................251641.006410000634601000000000
.............................................................................ACAAGGTAAATATCAGGTTGTT....................................................................................................................221464.004642231123924200500185000
.............................................................................ACAAGGTAAATATCAGGT........................................................................................................................181337.003370100326500003002000
.............................................................................ACAAGGTAAATATCAGGTTGT.....................................................................................................................211295.0029508012313011050144000
.............................................................................ACAAGGTAAATATCAGGTTG......................................................................................................................201194.001940110178500000009000
............................................................................AACAAGGTAAATATCAGGTTGTTTC..................................................................................................................251171.001710200158300002006000
.............................................................................ACAAGGTAAATATCAGGTT.......................................................................................................................191105.001050000101200000002000
............................................................................AACAAGGTAAATATCAGGT........................................................................................................................19193.0093000091100001000000
......................................................................................................................AACATCTGTATATACCTTTGAT...........................................................................22182.00821274100651000037000
............................................................................AACAAGGTAAATATCAGGTTG......................................................................................................................21174.0074020069100001001000
............................................................................AACAAGGTAAATATCAGGTTGT.....................................................................................................................22172.0072160055310002004000
............................................................................AACAAGGTAAATATCAGGTTGTT....................................................................................................................23163.00630300301110040023000
............................................................................AACAAGGTAAATATCAGG.........................................................................................................................18150.0050000050000000000000
......................................................................................................................AACATCTGTATATACCTTTGA............................................................................21147.00472500191000000020000
............................................................................AACAAGGTAAATATCAGGTT.......................................................................................................................20141.0041000039000000002000
............................................................................AACAAGGTAAATATCAGGTTGTTT...................................................................................................................24136.0036020041310050119000
.............................................................................ACAAGGTAAATATCAGGTTGTTTCA.................................................................................................................25134.0034000000000000034000
............................................................................AACAAGGTAAATATCAGGTTGTTTCC.................................................................................................................26131.0031000030100000000000
......................................................................................................................AACATCTGTATATACCTTTGATC..........................................................................23127.0027042018001000002000
.............................................................................ACAAGGTAAATATCAGGTTGTTTT..................................................................................................................24126.0026000000000000026000
.............................................................................ACAAGGTAAATATCAGGTTGTTTA..................................................................................................................24117.0017000000100000016000
.....................................................................................................................AAACATCTGTATATACCTTTGA............................................................................22112.0012010010000000010000
.............................................................................ACAAGGTAAATATCAGGTTGTTTCT.................................................................................................................25111.001100000011000009000
.............................................................................ACAAGGTAAATATCAGGTTGTTA...................................................................................................................23110.001000000010000009000
.......................................................................................................................ACATCTGTATATACCTTTGATC..........................................................................2219.00904000000000005000
............................................................................AACAAGGTAAATATCAGGTTGTTTCT.................................................................................................................2616.00600000000000006000
.............................................................................ACAAGGTAAATATCAGGTTGTTC...................................................................................................................2315.00500000000001004000
.............................................................................ACAAGGTAAATATCAGGTTGTTAA..................................................................................................................2415.00500000000000005000
......................................................................................................................AACATCTGTATATACCTTTG.............................................................................2015.00500003010000001000
..................................................................................GTAAATATCAGGTTGTTTC..................................................................................................................1915.00500000000005000000
......................................................................................................................AACATCTGTATATACCTT...............................................................................1814.00401003000000000000
............................................................................AACAAGGTAAATATCAGGTTGTTA...................................................................................................................2414.00400000000000004000
.....................................................................................................................AAACATCTGTATATACCTTTGAT...........................................................................2314.00402000000000002000
.............................................................................ACAAGGTAAATATCAGGTTGTTTAA.................................................................................................................2514.00400000010000003000
....................................................................................AAATATCAGGTTGTTTC..................................................................................................................1714.00400000000004000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTCAA................................................................................................................2613.00300000000000003000
......................................................................................................................AACATCTGTATATACCTTTGATT..........................................................................2313.00300100000000002000
.............................................................................ACAAGGTAAATATCAGGTTGTTTAAA................................................................................................................2613.00300000000000003000
..............................................................................CAAGGTAAATATCAGGTTGTTTCC.................................................................................................................2413.00300003000000000000
...................................................................................TAAATATCAGGTTGTTTC..................................................................................................................1813.00301000000002000000
............................................................................AACAAGGTAAATATCAGGTTGG.....................................................................................................................2213.00303000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTCAAA...............................................................................................................2712.00200000000000002000
...................................................................................TAAATATCAGGTTGTTT...................................................................................................................1712.00200000002000000000
............................................................................AACAAGGTAAATATCAGGTTGTTTCA.................................................................................................................2612.00200000011000000000
.............................................................................ACAAGGTAAATATCAGGTTGC.....................................................................................................................2112.00202000000000000000
.......................................................................................................................ACATCTGTATATACCTTTGATCCG........................................................................2412.00200002000000000000
............................................................................AACAAGGTAAATATCAGGTTGTTTAA.................................................................................................................2612.00200000001000001000
.................................................................................GGTAAATATCAGGTTGTT....................................................................................................................1812.00200000000001001000
......................................................................................................................AACATCTGTATATACCTTTGAC...........................................................................2212.00202000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTCCT................................................................................................................2612.00200002000000000000
.......................................................................................................................ACATCTGTATATACCTTTGA............................................................................2012.00201000000000001000
.............................................................................ACAAGGTAAATATCAGGTTGTTTG..................................................................................................................2412.00200000000000002000
.......................................................................................................................ACATCTGTATATACCTTTGAT...........................................................................2112.00201000000000001000
..............................................................................CAAGGTAAATATCAGGTTGTTTC..................................................................................................................2312.00201000000000001000
...............................................................................AAGGTAAATATCAGGTTGTTT...................................................................................................................2112.00200010000000001000
............................................................................AACAAGGTAAATATCAGGTTT......................................................................................................................2111.00100000000000001000
.......................................................................................................................ACATCTGTATATACCTTTGATCA.........................................................................2311.00100000000000001000
................................................................................AGGTAAATATCAGGTTGTTTC..................................................................................................................2111.00100000000001000000
.............................................................................ACAAGGTAAATATCAGGTTGTA....................................................................................................................2211.00100000000000001000
..............................................................................CAAGGTAAATATCAGGTTGTT....................................................................................................................2111.00100000000000001000
............................................................................AACAAGGTAAATATCAGGTTGTTTA..................................................................................................................2511.00100000000000001000
............................................................................AACAAGGTAAATATCAGGTTGC.....................................................................................................................2211.00101000000000000000
............................................................................AACAAGGTAAATATCAGGTTGTTTAAA................................................................................................................2711.00100000000000010000
.............................................................................ACAAGGTAAATATCAGGTTGTAA...................................................................................................................2311.00100000000000001000
............................................................................AACAAGGTAAATATCAGGTTGA.....................................................................................................................2211.00100000000000001000
...............................................................................AAGGTAAATATCAGGTTGTTTCAC................................................................................................................2411.00100000000000001000
......................................................................................................................AACATCTGTATATACCTTTGG............................................................................2111.00101000000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTCG.................................................................................................................2511.00100000000000001000
.....................................................................................................................AAACATCTGTATATACCTTTGAA...........................................................................2311.00100000000000001000
.............................................................................ACAAGGTAAATATCAGGTTGTTTTAG................................................................................................................2611.00100000000000001000
......................................................................................................................AACATCTGTATATACCTTTGAA...........................................................................2211.00100000000000001000
.....................................................................................AATATCAGGTTGTTTC..................................................................................................................1611.00100000000001000000
.............................................................................ACAAGGTAAATATCAGG.........................................................................................................................1711.00100000000000001000
............................................................................AACAAGGTAAATATCAGGTTGTTTTT.................................................................................................................2611.00100000000000001000
......................................................................................................................AACATCTGTATATACCTTT..............................................................................1911.00100001000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTTT.................................................................................................................2511.00100000000000001000
....................................................................................AAATATCAGGTTGTTTCC.................................................................................................................1811.00100001000000000000
.............................................................................ACAAGGTAAATATCAGGTTGTTTTA.................................................................................................................2511.00100000000000001000
............................................................................AACAAGGTAAATATCA...........................................................................................................................1620.50100000000000001000
......................................................................................................................AACATCTGTATATACCTTAT.............................................................................2020.50100000000000001000
droSec2
TG--GCAATTA--CT----------------------------ACTGAT-TTTT-------CTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TAGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCAT-CTT------CTAGT-G-GG-TAA--ATCCATGTGGTTATGATAA-GTCAATSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.............................................................................ACAAGGTAAATATCAGGTTGTTTC..................................................................................................................241255.0025551288834
.............................................................................ACAAGGTAAATATCAGGTTGTTT...................................................................................................................231139.00139112585
.............................................................................ACAAGGTAAATATCAGGTTGTT....................................................................................................................22123.002302210
............................................................................AACAAGGTAAATATCAGGTTGTTT...................................................................................................................24119.00191981
.............................................................................ACAAGGTAAATATCAGGTTGT.....................................................................................................................21114.001401301
............................................................................AACAAGGTAAATATCAGGTTGTT....................................................................................................................23111.001101100
............................................................................AACAAGGTAAATATCAGGTTGTTTC..................................................................................................................2519.0091530
.............................................................................ACAAGGTAAATATCAGGTTGTTTCT.................................................................................................................2517.0070601
............................................................................AACAAGGTAAATATCAGGTTGT.....................................................................................................................2215.0051301
......................................................................................................................AACATCTGTATATACCTTTGAT...........................................................................2212.0020110
.............................................................................ACAAGGTAAATATCAGGTTGTTC...................................................................................................................2312.0020101
.............................................................................ACAAGGTAAATATCAGGTT.......................................................................................................................1911.0010010
.............................................................................ACAAGGTAAATATCAGGTTG......................................................................................................................2011.0010100
............................................................................AACAAGGTAAATATCAGGTTGTTTT..................................................................................................................2511.0010100
.............................................................................ACAAGGTAAATATCAGGTTGTTA...................................................................................................................2311.0010001
............................................................................AACAAGGTAAATATCAGGTT.......................................................................................................................2011.0010010
.............................................................................ACAAGGTAAATATCAGGTTT......................................................................................................................2011.0010100
.....................................................................................................................AAACATCTGTATATACCTTTGA............................................................................2211.0010100
............................................................................AACAAGGTAAATATCAGGTTGTTTA..................................................................................................................2511.0010010
.................................................................................GGTAAATATCAGGTTGTTTT..................................................................................................................2011.0010100
............................................................................AACAAGGTAAATATCAGGTTG......................................................................................................................2111.0010100
..............................................................................CAAGGTAAATATCAGGTTGTTTC..................................................................................................................2311.0011000
.............................................................................ACAAGGTAAATATCAGGT........................................................................................................................1811.0010010
droYak3
GTG-GGTATCA--CT----------------------------ACTGCATTGTT-------CTTGGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCAT-CTT------CAAGT-------TAT-ATCC----T---AT-----GATCAATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................................ACATCTGTATATACCTTTGTTCT.........................................................................23157.00574512000000000
.......................................................................................................................ACATCTGTATATACCTTTGTTCC.........................................................................23112.001292100000000
............................................................................AACAAGGTACATATCAGGTTGTT....................................................................................................................23112.0012010000110000
............................................................................AACAAGGTACATATCAGGTTGTTT...................................................................................................................24112.0012001000110000
............................................................................AACAAGGTACATATCAGGTTGT.....................................................................................................................22111.001110000090010
............................................................................AACAAGGTACATATCAGGTTG......................................................................................................................2113.00311000010000
.......................................................................................................................ACATCTGTATATACCTTTGTTC..........................................................................2213.00303000000000
..........................................................................AAAACAAGGTACATATCAGGTTGTT....................................................................................................................2513.00300000030000
..........................................................................AAAACAAGGTACATATCAGGTTGT.....................................................................................................................2412.00200000020000
........................................................................................................................CATCTGTATATACCTTTGTTCCG........................................................................2312.00220000000000
..........................................................................................................................TCTGTATATACCTTTGTTCT.........................................................................2012.00220000000000
.............................................................................ACAAGGTACATATCAGGTTGTTT...................................................................................................................2312.00201000100000
......................................................................................................................AACATCTGTATATACCTTTGTTCT.........................................................................2411.00110000000000
.............................................................................ACAAGGTACATATCAGGTTGT.....................................................................................................................2111.00100000010000
............................................................................AACAAGGTACATATCAGGTT.......................................................................................................................2011.00100001000000
............................................................................AACAAGGTACATATCAGGT........................................................................................................................1911.00100000010000
.......................................................................................................................ACATCTGTATATACCTTTGTTA..........................................................................2211.00101000000000
..........................................................................AAAACAAGGTACATATCAGGTTG......................................................................................................................2311.00100000010000
............................................................................AACAAGGTACATATCAGGTTGTTTT..................................................................................................................2511.00100000010000
............................................................................AACAAGGTACATATCAGGTTGTTTC..................................................................................................................2511.00100000000010
............................................................................AACAAGGTACATATCAGGTTGG.....................................................................................................................2211.00110000000000
.......................................................................................................................ACATCTGTATATACCTTTGTT...........................................................................2111.00101000000000
droEre2
TC--------A--GT----------------------------GCTG-CTTGTT-------CTTAGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTGTATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCAT-CTT------CTAGT-T-GG-TTAC-ATCC---------------TTGCGTTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............................................................................AACAAGGTACATATCAGGTTG......................................................................................................................211123.00123603094200
............................................................................AACAAGGTACATATCAGGTTGTTT...................................................................................................................24174.0074103050200
............................................................................AACAAGGTACATATCAGGTTGTT....................................................................................................................23160.0060201045120
............................................................................AACAAGGTACATATCAGGTTGT.....................................................................................................................22152.005200105100
.............................................................................ACAAGGTACATATCAGGTTGTT....................................................................................................................22123.002300001940
..........................................................................AAAACAAGGTACATATCAGGTTGTT....................................................................................................................25117.00170000890
.............................................................................ACAAGGTACATATCAGGTTGTTT...................................................................................................................23115.001510001040
..........................................................................AAAACAAGGTACATATCAGGT........................................................................................................................21110.00100010900
.............................................................................ACAAGGTACATATCAGGTTGT.....................................................................................................................2118.0080000620
............................................................................AACAAGGTACATATCAGGTTGTTTC..................................................................................................................2517.0070002140
..........................................................................AAAACAAGGTACATATCAGGTTGT.....................................................................................................................2417.0070000520
.......................................................................................................................ACATCTGTATATACCTTTGTTCT.........................................................................2316.0062010210
..........................................................................AAAACAAGGTACATATCAGGTTG......................................................................................................................2314.0040000310
..........................................................................AAAACAAGGTACATATCAGGTT.......................................................................................................................2213.0030000210
.............................................................................ACAAGGTACATATCAGGTTGTTTC..................................................................................................................2412.0021000100
........................................................................................................................CATCTGTATATACCTTTGTTCCG........................................................................2312.0020010100
.......................................................................................................................ACATCTGTATATACCTTTGTTCC.........................................................................2312.0020100010
......................................................................................................................AACATCTGTATATACCTTTGTT...........................................................................2211.0011000000
.............................................................................ACAAGGTACATATCAGGTTGTTC...................................................................................................................2311.0010000010
............................................................................AACAAGGTACATATCAGGTTGTC....................................................................................................................2311.0010000010
.......................................................................................................................ACATCTGTATATACCTTTGTTC..........................................................................2211.0010100000
.............................................................................ACAAGGTACATATCAGGTTG......................................................................................................................2011.0011000000
............................................................................AACAAGGTACATATCAGGTTGTTTT..................................................................................................................2511.0010000100
........................................................................................................................CATCTGTATATACCTTTGTTCC.........................................................................2211.0010000100
.......................................................................................................................ACATCTGTATATACCTTTG.............................................................................1911.0011000000

Generated: 10/20/2015 at 07:37 PM