dmo_1187

CDS [Dmoj\GI18715-cds]; exon [dmoj_GLEANR_3654:3]; exon [dmoj_GLEANR_3654:2]; CDS [Dmoj\GI18715-cds]; intron [Dmoj\GI18715-in]

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

##################################################------------------------------------------------------------################################################## CGCAGCTGGTGCAGTGGACAACGGGCGGTAAGCTGCAGAGCTATGCGCAAGTGAGTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAACAGCAACAACAGCAGCAGCAACAACAACAGCAGCAGCAACAACAGCATCAGAGCACGCCCAA ************************************************.((...........((.......((.((....)).)).......))...........)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body	M060 embryo	V049 head
...................AACGGGCGGTAAGCTGCAGAGCTA.....................................................................................................................	24	0	1	1.00	1	1	0	0	0
..............................................................................................................................AGCAGCAGCAACAACAGCATC.............	21	0	7	0.14	1	0	1	0	0
.....CTTGTGCGGGGGACAACGG........................................................................................................................................	19	3	10	0.10	1	0	0	0	1
......................................................................................................................ACAACAACAGCAGCAGCAAC......................	20	0	20	0.10	2	0	2	0	0
..........................................................................................................ACAGCAGCAGCAACAACAAC..................................	20	0	20	0.10	2	1	1	0	0
..............................................................................AGCAGCAGCAACAACAGCAACAGCAACA......................................................	28	0	20	0.05	1	0	0	1	0
.............................................................................................................GGAGCAGCAACAACAACAGCAGC............................	23	1	20	0.05	1	0	0	1	0
........................................................................................................................AACAACAGCAGCAGCAACAACAGC................	24	0	20	0.05	1	0	0	1	0
.............................................................................................................GCAGCAGTAACAACAACAGCAGAAGC.........................	26	2	20	0.05	1	0	0	1	0
.........................................................AGCAGCAGCAGCAACAGCAGCA.................................................................................	22	0	20	0.05	1	0	1	0	0
..........................GGTAAAATACAGAGCTATG...................................................................................................................	19	3	20	0.05	1	1	0	0	0
..................................................................AGCAACAGCAGCAGCAGCAGC.........................................................................	21	0	20	0.05	1	0	0	0	1
.......................................................................................AACAACAGCAACAGCAACAACAGCACC..............................................	27	1	20	0.05	1	0	0	1	0

GCGTCGACCACGTCACCTGTTGCCCGCCATTCGACGTCTCGATACGCGTTCACTCAGTCGTCGTCGTCGTTGTCGTCGTCGTCGTCGTTGTTGTCGTTGTCGTTGTTGTCGTCGTCGTTGTTGTTGTCGTCGTCGTTGTTGTCGTAGTCTCGTGCGGGTT ************************************************.((...........((.......((.((....)).)).......))...........)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body
........................................................................................................GTTGTCGTCGTCGTTGTTGTT...................................	21	0	20	0.05	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:17141154-17141313 -	dmo_1187	CGC--AGCTGGTGCAGTGGACAACGG---------GC-----------GGTAAGCTGCAGAGCTATGCGCAA------GTGAGTC---------------------------------------AGCAGCA---GCA---GCAACAGCAGC------AGCAGCAGCAACAAC------------------------AGCAACAGCAACAA---CAGCAGCAGCAA---------CAACAACAGCAGC--------------A---GCAACAAC------AG------CATCAGAGCACGCCCAA
droVir3	scaffold_12875:9893571-9893703 +		CGC--AGCTGGTCCAGTGGACCACGG---------GC-----------GGCAAGCTGCAGAGCTATGCGCAC------GTCAGTC---------------------------------------AGCAGCAGCAGCAGCA---GC---AGCAG---C---AGCAACAG------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCAGCAAC------AG------CATCAGAGCACGCCCAA
droGri2	scaffold_15245:3094809-3094956 +		CTC--AGCTGGTGCAGTGGACAACAG---------GT-----------GGCAAGCTGCAGAGCTATGCGCAG------GTCAGTC---------------------------------------AGCATCAGCAACAGCA---GC---AGCAG---C---AAC------AGCAG------------CAGCAACAAC------------------------------AACAGCAGCAGCAACAACA-----------------GCAGCAACAGG------TT------CATCAGAGCACGCCCAA
droWil2	scf2_1100000004512:2442784-2442928 +	dwi_803	CAC--AATTGGTTCAATGGACAACTG---------GT-----------GGAAAGCTACAAAGTTATGCCCAA------GTTAGTC---------------------------------------AGCAGCAGCAGCAGCA---AC---AGCAACAAC---AGCAACAGCAGC---------AACAACAGCAGCAAC------AGCA------------------------G------C-----------------------A---GCAGCAGC------AA------CATCAGAGTACGCCCAA
dp5	3:8893455-8893587 +		CGC--AGCTGGTGCAATGGACGACGG---------GT-----------GGCAAACTGCAGAGCTATGCCCAT------GTCAGCC---------------------------------------AGCAGCAGCAGCAACA---AC---AACAG---C---AGCAGCAA------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCACCACC------AC------CACCAGAGCACACCGAA
droPer2	scaffold_4:2778839-2778971 +		CGC--AGCTGGTGCAATGGACGACGG---------GT-----------GGCAAACTGCAGAGCTATGCCCAT------GTCAGCC---------------------------------------AGCAGCAGCAGCAACA---AC---AGCAG---C---AGCAGCAA------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCACCACC------AC------CACCAGAGCACACCGAA
droAna3	scaffold_13337:15485094-15485250 +		CGCCCAGCAGGTGCAGCAG-CAGCAG---------GT-----------CGCCA-CCGCCCACCAGCAG----------------------------------C---------AACATCAACAGCAGCAGCA---GCA---ACAACAGCAGC------AGCAACAACAACAAC------------------------AGCAACAGCAGCAA---CAAC---------AACACCAGCAGCAACAGCA-----------------GCAGCACCAAC------AA------CAAC--AGCACGCC---
droBip1	scf7180000395832:64764-64914 +		C-C--AGCAGGTGCAGCAG-CAGCAG---------GT-----------CGCCA-CCGCCCACCAGCAG----------------------------------C---------AACACCAACAGCAGCAGCA---GCA---ACAAC---AAC---AGC---AGCAACAACAAC------------------------AGCAACAGCAGCAG---CAAC---------AACACCAGCAGCAACAGCA-----------------GCAGCACCAAC------AA------CAAC--AGCACGCC---
droKik1	scf7180000302277:976513-976663 +		CGC--CGCTGCAGCAGG---CGACCA---------TTGG-CC-AG---AT-------CACATTGACGGCCAT------GTCCACC-----------------------------GCCC---AACAGCAGCA---GCA---GCAACAGCAAC---AGC---AGCAGCAACAAC------------------------AACAACAGCAGCAG---CAGCAACAGC---AA------CAGCAGCAGCA-----------------GCAACATCAAC------AG------CAGC------------A
droFic1	scf7180000454050:456542-456690 -		AGG--AGCCGGGC----GGACCCGGT---------TCGGTCCAGC---AG----CAGCACCACCACCTGC---------------------------------------------------AGCAGCAGCA---GCA---CCACCAGCAGC------AGCAGCAGCAACAGC------------------------AGCA---GCAGCAG---CACCACCAGC---AACACCAGCAGCAACAGCA-----------------GCAGCAGCAGC------AC------C--------ACCTGCAA
droEle1	scf7180000491044:204314-204451 +		AGC--AGCTGCTGCAGTGGCCAG-------------C-----------AACACGTTGCAGCAGCATCAGCA---------------------------------------------------GCACCACCA---GCA---GCAACAGCAGC------AGCAGCAACAACAAC------------------------AGCA---GCAGCAACAGCAGCAGCAACAA---------CAGCAGCAGCA-----------------GCAGCAACAAC------AG------CAGC------------A
droRho1	scf7180000778995:15143-15293 +		GAC--AGCGACGTCGGAGA-TGA-GT---------TC-----------AAC--------------------------------GCAGCGTCAGGTGCAGCAGC---AA---CAAGAGC---ACCAGCAGCA---GCA---GCAACAGCAGC------AGCAGCAACAACAAC------------------------AACA---GCAGGAACAGCAGCAGCAACAACAACAGCAGCAGC-----------------------A---GCAACAAC------AG------CAGCAG-----------
droBia1	scf7180000302075:432131-432293 +		AGC--ATCAGCAGCAGCAG-CAA-------------------------------CAACAACAGCAA------------------------------------C---------AGCA------ATAGTAATA---GCA---GCAGCAGCAGC------AGCAGCAGCAACAGC------------------------AGCA---GCAGCAGCAACAGCAGCAACAACAGCAACAGCAGCAGCAACA--GCACACATCAGCCT-G---CAACAGCAGCAACAT------C-----AGCGCGTCCAA
droTak1	scf7180000414393:29123-29275 -		-GC--ATGTGGTGCAGCAG-CAT-------------------------------CAGCAGATGCAG------------------------------------GAGCAAATGCAGGAGC---AGCAGCAGCA---GCA---GCAACAGCAAC---AGC---AGCAACAGCAGC------------------------AGCAACAGCAGCAG---CAGC---AGC---AACCCCAGCAGCAACAGCA-------------ACA-G---CAGCAGC------AG------CAACAG---GTGCACAA
droEug1	scf7180000409032:796263-796408 +		AGC--AGCAGCCGCAACAA-CAG-------------------------------CAGCAG------------------------------------------C---------CGCAACAACAGCAGCAGCC---GCA---ACAACAGCAGC---------AGCAGCAACAAC------------------------AGCAGCAGCAACAACAGCAGCAGCAGCAACAACCGCAGCTGCTGCAACA-------------ACA-A---CAGCAGC------AG------C-----AACCAATCCAA
dm3	chrX:4973695-4973854 -		AAC--AGCAGGCGCAGCAA-CAA-AG---------GC-----------AGCA-GCAGCAGCAGCAG------------------------------------G---------AACAACAAAGGCAGCAGCAGCAACAACA---GC---AGC---------AACAGC---AGCAG------------C---------AGCAGGCGCAACAAGAACAGCAGAGGCAGCAACAGCAGCAGCTACAACA-----------------GCAGCAGCAGC------AA------C-----AGCAAACCC-A
droSim2	3l:5195134-5195280 -		AAC--AAGTGTTGCCGG-GACAACAGTCGCAGCAA-A-----------GGC---TAGCAAAACCACAAGCA---------------------------------------------------GAACAAGCA---GCA---GCAACAGCAGC------AGCAGCAGCAACAAC------------------------AGCGACAGCAGCAA---CATC---------AACAGCAGCAGCAACAGCA-----------------GCAGCGGCAGC------AG------CAGCAG-----------
droSec2	scaffold_21:919602-919752 -		CGC--TGCTGCGGCCGCTG-CGG-TG---------GC---TCAGGAGCAACAT----CGTCAGCAG------------------------------------T---------TGCATC------AACAGCA---GCA---GCAGCATCAGCAGCAGC---A---GCAGCAGCAG------------C---------AGCA---GCAGCAG---CAGC---AGC---AACAGCAACATCAACAGC-----------------AG---CAGCAGC------AG------CAACAG-GCACGC----
droYak3	X:7838216-7838357 +	dya_1354	AGC--AGCAACAACAGCAG-CAA-------------------------------CAACAACAGCAG------------------------------------C---------CCCAAC---AACAACAGCA---GCA---GCAACAGCAGC------AGCAGCAACAACAAC------------------------AGCAGCAGCAACAA---CAGC---AGC---AG---CAGCAACAACAACA-------------ACA-G---CAGCAGC------AG------CAACAG---GTGCACAA
droEre2	scaffold_4845:12291420-12291578 +		CGT--GGCTGGGGAGGA-T-CAGCAC----CGCAG-A-----------GCCTCGTTGCAGGGCG---TGCAGGAGAAGCTCACGC---------------------------------------AGCTGCAGATGCA---GCAGC---AGCAC---C---ATC------ACCAGCAACAGCAACAACACC------AGCA---GCAGCAGCAGCAGCAG------------------CA--------------------------ACATCATC------ACCATCAGC-----AGCAAGCGC-A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CGC--AGCTGGTGCAGTGGACAACGG---------GC-----------GGTAAGCTGCAGAGCTATGCGCAA------GTGAGTC---------------------------------------AGCAGCA---GCA---GCAACAGCAGC------AGCAGCAGCAACAAC------------------------AGCAACAGCAACAA---CAGCAGCAGCAA---------CAACAACAGCAGC--------------A---GCAACAAC------AG------CATCAGAGCACGCCCAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................AACGG---------GC-----------GGTAAGCTGCAGAGCTA...............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................AGCAGC--------------A---GCAACAAC------AG------CATC.............	21	7	0.14	1	1	0	0	0	0	0
................................................................................................................................................................................................................................A---------CAACAACAGCAGC--------------A---GCAAC..................................	20	20	0.10	2	2	0	0	0	0	0
.................................................................................................................................................................................................................A---CAGCAGCAGCAA---------CAACAAC...............................................................	20	20	0.10	2	1	0	0	0	0	1
.............................................................................................................................................................AGCAGCAGCAACAAC------------------------AGCAACAGCAACA...............................................................................................	28	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................AACAACAGCAGC--------------A---GCAACAAC------AG------C................	24	20	0.05	1	0	0	0	0	1	0
............................................................................................................................AGCAGCA---GCA---GCAACAGCAGC------A..................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................A---GCAACAGCAGC------AGCAGCAGC..........................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0

droVir3

CGC--AGCTGGTCCAGTGGACCACGG---------GC-----------GGCAAGCTGCAGAGCTATGCGCAC------GTCAGTC---------------------------------------AGCAGCAGCAGCAGCA---GC---AGCAG---C---AGCAACAG------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCAGCAAC------AG------CATCAGAGCACGCCCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................AGCAGCAGCAGCA---GC---AGCA........................................................................................................................................................	19	20	1.00	20	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GTGGACCACGG---------GC-----------GGCAA...........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................AGAGCTATGCGCAC------GTCAGTC---------------------------------------AGC.................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................A---GCAGCAAC------AG------CATCAGAGCACGCCCAA	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AGCAACAAC------AGCA------------------------G------C-----------------------A---GCA....................................	19	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................G------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCAGC..................................	23	20	0.15	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AG------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---.......................................	19	20	0.15	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................C------AGCA------------------------G------C-----------------------A---GCAGCAAC------AG------CAT..............	21	20	0.10	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CAAC------AGCA------------------------G------C-----------------------A---GCAGCAAC------.........................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CAACAAC------AGCA------------------------G------C-----------------------A---GCAGC..................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CAGCA---GC---AGCAG---C---AGCAACAG------------------CAGCA.................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCA------------------------G------C-----------------------A---GCAGCAAC------AG------CATCA............	21	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................AGCA---GC---AGCAG---C---AGCAACAG------------------CAGCAACAA.............................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................A------------------------G------C-----------------------A---GCAGCAAC------AG------CATCA............	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AGCAGCAGCA---GC---AGCAG---C---AGCAACA.........................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CAG------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---G......................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AGCAACAG------------------CAGCAACAAC------AGC...................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GCAG---C---AGCAACAG------------------CAGCAAC...............................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................GCA---GC---AGCAG---C---AGCAACAG------------------CAGCAACA..............................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AGCAACAAC------AGCA------------------------G------C-----------------------A---GCAGCAA................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................AACAG------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCAGCA.................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GCAGCA---GC---AGCAG---C---AGCAACAG------------------CA....................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AGCAACAAC------AGCA------------------------G------C-----------------------A---GCAG...................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AG------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCA....................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................A---GC---AGCAG---C---AGCAACAG------------------CAGC..................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AAC------AGCA------------------------G------C-----------------------A---GCAGCAAC------AG------C................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................G------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCA....................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CAG------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---.......................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................CAGCAGCA---GC---AGCAG---C---AGCAACAG------------------......................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CAAC------AGCA------------------------G------C-----------------------A---GCAGCAAC------AG------C................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................CAACAAC------AGCA------------------------G------C-----------------------A---GCAGCAAC------AG------C................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................ACAAC------AGCA------------------------G------C-----------------------A---GCAGCAAC------AG------CA...............	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................G------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCAGCA.................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCA------------------------G------C-----------------------A---GCAGCAAC------AG------CATC.............	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GCAG---C---AGCAACAG------------------CAGCAACA..............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................GC---AGCAG---C---AGCAACAG------------------CAG...................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................AGCAGCAGCAGCA---GC---AGCAG---C---................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AGCAACAG------------------CAGCAACAAC------AGCA------------------------G------C-----------------------...........................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAACAG------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCA....................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GCAACAAC------AGCA------------------------G------C-----------------------A---GCAGCAAC------.........................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AC------AGCA------------------------G------C-----------------------A---GCAGCAAC------AG------CA...............	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AGCAGCA---GC---AGCAG---C---AGCAACA.........................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................GCAACAG------------------CAGCAACAAC------AGCA------------------------..........................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ACAG------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCAGC..................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

CTC--AGCTGGTGCAGTGGACAACAG---------GT-----------GGCAAGCTGCAGAGCTATGCGCAG------GTCAGTC---------------------------------------AGCATCAGCAACAGCA---GC---AGCAG---C---AAC------AGCAG------------CAGCAACAAC------------------------------AACAGCAGCAGCAACAACA-----------------GCAGCAACAGG------TT------CATCAGAGCACGCCCAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................................................AGCAGCAACAACA-----------------GCAGCAAC..................................	21	20	0.05	1	1	0

droWil2

CAC--AATTGGTTCAATGGACAACTG---------GT-----------GGAAAGCTACAAAGTTATGCCCAA------GTTAGTC---------------------------------------AGCAGCAGCAGCAGCA---AC---AGCAACAAC---AGCAACAGCAGC---------AACAACAGCAGCAAC------AGCA------------------------G------C-----------------------A---GCAGCAGC------AA------CATCAGAGTACGCCCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................GT-----------GGAAAGCTACAAAGTTATGCC...........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
...................ACAACTG---------GT-----------GGAAAGCTACAAAG..................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
...........................................................AAGTTATGCCCAA------GTTAGTC---------------------------------------AGC.................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................A---GCAGCAGC------AA------CATCAGAG.........	19	3	0.33	1	0	0	0	1	0
.......................................................................................................................................................AACAAC---AGCAACAGCAGC---------AACA.......................................................................................................................	22	20	0.30	6	0	5	0	1	0
..............................................................................................................................................................................................AGCAAC------AGCA------------------------G------C-----------------------A---GCAGC..................................	18	20	0.20	4	0	0	0	4	0
........................................................................................................................................AGCA---AC---AGCAACAAC---AGCAACAG........................................................................................................................................	23	19	0.16	3	0	3	0	0	0
...........................................................................................................................................A---AC---AGCAACAAC---AGCAACAGCAGC---------...........................................................................................................................	24	8	0.13	1	0	0	0	1	0
...............................................................................................................................................AC---AGCAACAAC---AGCAACAGCAGC---------...........................................................................................................................	23	8	0.13	1	0	1	0	0	0
............................................................................................................................................................................................GCAGCAAC------AGCA------------------------G------C-----------------------A---GCAGCA.................................	21	20	0.10	2	0	0	0	2	0
....................................................................................................................................................AGCAACAAC---AGCAACAGCAGC---------...........................................................................................................................	21	20	0.10	2	0	2	0	0	0
..................................................................................GTC---------------------------------------AGCAGCAGCAGCAGCA---A................................................................................................................................................................	20	18	0.06	1	0	1	0	0	0
......................................................................................................................................................................AGCAGC---------AACAACAGCAGCAAC------AGCA------------------------..........................................................................	25	19	0.05	1	0	1	0	0	0
......................................................................................................................................................CAACAAC---AGCAACAGCAGC---------AAC........................................................................................................................	22	20	0.05	1	0	0	1	0	0
..................................................................................................................................AGCAGCAGCA---AC---AGCAACAAC---AGC.............................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................AACAGCAGC---------AACAACAGCAGCA..............................................................................................................	22	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................AACAGCAGC---------AACAACAGCA.................................................................................................................	19	20	0.05	1	0	0	0	1	0
...........................................................................................................................................A---AC---AGCAACAAC---AGCAACAG........................................................................................................................................	20	20	0.05	1	0	1	0	0	0
...............................................................................................................................AGCAGCAGCAGCA---AC---AGCAAC......................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................AGC---------AACAACAGCAGCAAC------AG....................................................................................................	20	20	0.05	1	0	0	0	0	1
.....................................................................................................................................................................................AACAACAGCAGCAAC------AGCA------------------------..........................................................................	19	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................AACAACAGCAGCAAC------AGC...................................................................................................	18	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................GCAACAAC---AGCAACAGCAGC---------...........................................................................................................................	20	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................GCAGC---------AACAACAGCAGCAAC------......................................................................................................	20	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................ACAACAGCAGCAAC------AGCA------------------------..........................................................................	18	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................CAGCAAC------AGCA------------------------G------C-----------------------A---GCAGCA.................................	20	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................C---------AACAACAGCAGCAAC------AGCA------------------------G------C-----------------------...........................................	22	20	0.05	1	0	0	0	1	0
.................................................................................AGTC---------------------------------------AGCAGCAGCAGCAGC.....................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................AGC---------AACAACAGCAGCAAC------AGC...................................................................................................	21	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................CAGCAGCAAC------AGCA------------------------G------C-----------------------A---GCAG...................................	21	20	0.05	1	0	0	0	0	1

dp5

CGC--AGCTGGTGCAATGGACGACGG---------GT-----------GGCAAACTGCAGAGCTATGCCCAT------GTCAGCC---------------------------------------AGCAGCAGCAGCAACA---AC---AACAG---C---AGCAGCAA------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCACCACC------AC------CACCAGAGCACACCGAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................CGG---------GT-----------GGCAAACTGCAGAGC.................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................................................................................CAGCC---------------------------------------AGCAGCAGCAGCAAC.....................................................................................................................................................................	20	8	0.25	2	0	0	0	0	0	0	0	0	2	0
.........................................................................................................................................ACA---AC---AACAG---C---AGCAGCAA------------------C.....................................................................................................................	20	20	0.10	2	0	0	1	0	1	0	0	0	0	0
.......................................................................................................................................CAACA---AC---AACAG---C---AGCAGCAA------------------CA....................................................................................................................	23	20	0.10	2	0	1	0	0	1	0	0	0	0	0
...........................................................................................................................................A---AC---AACAG---C---AGCAGCAA------------------CAGC..................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................CA---AC---AACAG---C---AGCAGCAA------------------CAG...................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................AGCC---------------------------------------AGCAGCAGCAGCAAC.....................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................AGCAA------------------CAGCAACAAC------AGCA------------------------G------C-----------------------...........................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................C---AACAG---C---AGCAGCAA------------------CAGCAAC...............................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................GCAGCAA------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---.......................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................CAACA---AC---AACAG---C---AGCAG...........................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................CAGCAGCAACA---AC---AACAG---C---AG..............................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................GCAA------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GC.....................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................GCAGCAGCAACA---AC---AACAG---C---................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................G---C---AGCAGCAA------------------CAGCAACAAC------AGC...................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................CAA------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---.......................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................AACA---AC---AACAG---C---AGCAGCA.........................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................A------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCA....................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................GCAGCAACA---AC---AACAG---C---AGCAGC..........................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................AGCAGCAACA---AC---AACAG---C---A...............................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................AGCAGCAGCAGCAACA---AC---AACAG---C---AGC.............................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGC--AGCTGGTGCAATGGACGACGG---------GT-----------GGCAAACTGCAGAGCTATGCCCAT------GTCAGCC---------------------------------------AGCAGCAGCAGCAACA---AC---AGCAG---C---AGCAGCAA------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GCACCACC------AC------CACCAGAGCACACCGAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................AAACTGCAGAGCTATGCCCAT------GT................................................................................................................................................................................................................................	23	1	3.00	3	2	0	1	0	0	0
..................................................................................................................................................................CAGCAA------------------CAGCAACAAC------AGCA------------------------..........................................................................	20	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................GCAA------------------CAGCAACAAC------AGCA------------------------G------C-----------------------A---GC.....................................	23	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................AGCAACA---AC---AGCAG---C---AGCAGC..........................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................CAACA---AC---AGCAG---C---AGCAGCAA------------------......................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................GCAGCAGCAGCAACA---AC---AGCAG---C---A...............................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
...........................................................................................................................................................................................AGCAACAAC------AGCA------------------------G------C-----------------------A---GC.....................................	18	20	0.05	1	0	1	0	0	0	0

droAna3

CGCCCAGCAGGTGCAGCAG-CAGCAG---------GT-----------CGCCA-CCGCCCACCAGCAG----------------------------------C---------AACATCAACAGCAGCAGCA---GCA---ACAACAGCAGC------AGCAACAACAACAAC------------------------AGCAACAGCAGCAA---CAAC---------AACACCAGCAGCAACAGCA-----------------GCAGCACCAAC------AA------CAAC--AGCACGCC---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................AACAGCAGCAGCA---GCA---ACAACA..............................................................................................................................................................	22	20	1.05	21	11	0	0	0	0	10
............GCAGCAG-CAGCAG---------GT-----------CGCC............................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	1
......................................................................................................................................GCA---ACAACAGCAGC------AGCAACAACAAC.......................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................AACACCAGCAGCAACAGCA-----------------GCA.......................................	22	4	0.25	1	0	1	0	0	0	0
................................................................................................................................GCA---GCA---ACAACAGCAGC------AGC................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0
...................................................................G----------------------------------C---------AACATCAACAGCAGCAGCA---GCA---AC..................................................................................................................................................................	26	4	0.25	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................AC---------AACACCAGCAGCAACAG.............................................................	19	5	0.20	1	0	1	0	0	0	0
...............................................................................................................................................ACAGCAGC------AGCAACAACAACAAC------------------------AGC.........................................................................................................	26	6	0.17	1	0	1	0	0	0	0
......................................................................................................................................................................AACAAC------------------------AGCAACAGCAGCAA---...........................................................................................	20	16	0.13	2	1	0	1	0	0	0
......................................................................................................................AACAGCAGCAGCA---GCA---ACAACAGC............................................................................................................................................................	24	20	0.10	2	1	1	0	0	0	0
...........................................................................................................................CAGCAGCA---GCA---ACAACAGCAGC------...................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
...................................................................................................................ATCAACAGCAGCAGCA---GCA---A...................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0
..............................................................................................................................................AACAGCAGC------AGCAACAACAAC.......................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................GC------AGCAACAACAACAAC------------------------AG..........................................................................................................	19	20	0.10	2	0	0	0	0	0	2
.......................................................................................................................................................................ACAAC------------------------AGCAACAGCAGCAA---CA.........................................................................................	21	14	0.07	1	0	1	0	0	0	0
...................................................................................................................................................................AACAACAAC------------------------AGCAACAGCAGC................................................................................................	21	14	0.07	1	0	1	0	0	0	0
.............................................................................................................................................................AGCAACAACAACAAC------------------------AGCAAC......................................................................................................	21	15	0.07	1	0	1	0	0	0	0
..................................................................................................................CATCAACAGCAGCAGCA---GCA---....................................................................................................................................................................	20	17	0.06	1	0	0	0	0	1	0
.......................................................................................................................ACAGCAGCAGCA---GCA---ACAA................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...................................................................................................................ATCAACAGCAGCAGCA---GC........................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................AGCAGCAGCA---GCA---ACAACAGCAGC------A..................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................GCAGCAGCA---GCA---ACAACAGCAGC------...................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................AAC------------------------AGCAACAGCAGCAA---CA.........................................................................................	19	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................CAGCAGC------AGCAACAACAACAAC------------------------A...........................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................GCAGCAGCA---GCA---ACAACAGC............................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................AACAGCAGCAA---CAAC---------AACA..........................................................................	19	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................A---GCA---ACAACAGCAGC------AGCAAC.............................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................AC------------------------AGCAACAGCAGCAA---CAAC---------..............................................................................	20	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................AGCA---GCA---ACAACAGCAGC------AGC................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................CAACAGCAGC------AGCAACAACAACA......................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................CAAC------------------------AGCAACAGCAGCAA---C..........................................................................................	19	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................CAACAGCAGCAGCA---GCA---ACAACAGC............................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
............................................................................................................................AGCAGCA---GCA---ACAACAGCAGC------AGC................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................ACAGCAGC------AGCAACAACAAC.......................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................ACAGCAGCAGCA---GCA---ACA.................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................CAGCAGCAACAGCA-----------------GCAGCA....................................	20	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................ACAACAGCAGC------AGCAACA............................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
......................................................................................................................AACAGCAGCAGCA---GCA---ACA.................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................ACAGCAGCAGCA---GCA---ACAACAGC............................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................A---ACAACAGCAGC------AGCAACA............................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droBip1

C-C--AGCAGGTGCAGCAG-CAGCAG---------GT-----------CGCCA-CCGCCCACCAGCAG----------------------------------C---------AACACCAACAGCAGCAGCA---GCA---ACAAC---AAC---AGC---AGCAACAACAAC------------------------AGCAACAGCAGCAG---CAAC---------AACACCAGCAGCAACAGCA-----------------GCAGCACCAAC------AA------CAAC--AGCACGCC---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGC--CGCTGCAGCAGG---CGACCA---------TTGG-CC-AG---AT-------CACATTGACGGCCAT------GTCCACC-----------------------------GCCC---AACAGCAGCA---GCA---GCAACAGCAAC---AGC---AGCAGCAACAAC------------------------AACAACAGCAGCAG---CAGCAACAGC---AA------CAGCAGCAGCA-----------------GCAACATCAAC------AG------CAGC------------A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGG--AGCCGGGC----GGACCCGGT---------TCGGTCCAGC---AG----CAGCACCACCACCTGC---------------------------------------------------AGCAGCAGCA---GCA---CCACCAGCAGC------AGCAGCAGCAACAGC------------------------AGCA---GCAGCAG---CACCACCAGC---AACACCAGCAGCAACAGCA-----------------GCAGCAGCAGC------AC------C--------ACCTGCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGC--AGCTGCTGCAGTGGCCAG-------------C-----------AACACGTTGCAGCAGCATCAGCA---------------------------------------------------GCACCACCA---GCA---GCAACAGCAGC------AGCAGCAACAACAAC------------------------AGCA---GCAGCAACAGCAGCAGCAACAA---------CAGCAGCAGCA-----------------GCAGCAACAAC------AG------CAGC------------A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GAC--AGCGACGTCGGAGA-TGA-GT---------TC-----------AAC--------------------------------GCAGCGTCAGGTGCAGCAGC---AA---CAAGAGC---ACCAGCAGCA---GCA---GCAACAGCAGC------AGCAGCAACAACAAC------------------------AACA---GCAGGAACAGCAGCAGCAACAACAACAGCAGCAGC-----------------------A---GCAACAAC------AG------CAGCAG-----------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGC--ATCAGCAGCAGCAG-CAA-------------------------------CAACAACAGCAA------------------------------------C---------AGCA------ATAGTAATA---GCA---GCAGCAGCAGC------AGCAGCAGCAACAGC------------------------AGCA---GCAGCAGCAACAGCAGCAACAACAGCAACAGCAGCAGCAACA--GCACACATCAGCCT-G---CAACAGCAGCAACAT------C-----AGCGCGTCCAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-GC--ATGTGGTGCAGCAG-CAT-------------------------------CAGCAGATGCAG------------------------------------GAGCAAATGCAGGAGC---AGCAGCAGCA---GCA---GCAACAGCAAC---AGC---AGCAACAGCAGC------------------------AGCAACAGCAGCAG---CAGC---AGC---AACCCCAGCAGCAACAGCA-------------ACA-G---CAGCAGC------AG------CAACAG---GTGCACAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGC--AGCAGCCGCAACAA-CAG-------------------------------CAGCAG------------------------------------------C---------CGCAACAACAGCAGCAGCC---GCA---ACAACAGCAGC---------AGCAGCAACAAC------------------------AGCAGCAGCAACAACAGCAGCAGCAGCAACAACCGCAGCTGCTGCAACA-------------ACA-A---CAGCAGC------AG------C-----AACCAATCCAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAC--AGCAGGCGCAGCAA-CAA-AG---------GC-----------AGCA-GCAGCAGCAGCAG------------------------------------G---------AACAACAAAGGCAGCAGCAGCAACAACA---GC---AGC---------AACAGC---AGCAG------------C---------AGCAGGCGCAACAAGAACAGCAGAGGCAGCAACAGCAGCAGCTACAACA-----------------GCAGCAGCAGC------AA------C-----AGCAAACCC-A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................GCAGCAGCAG------------------------------------G---------AACAACAAAGGC....................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................AGCAGCAGCTACAACA-----------------GC........................................	18	2	3.50	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AACAAAGGCAGCAGCAGCAAC........................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................AACA---GC---AGC---------AACAGC---AGCAG------------C---------............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
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...................................................................................................................................................................................................................................................CA-----------------GCAGCAGCAGC------AA------C-----AGCAA......	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AACAACA---GC---AGC---------AACAGC---AGC....................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CAACA---GC---AGC---------AACAGC---AGCAG------------......................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................ACA-----------------GCAGCAGCAGC------AA------C-----AGCA.......	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................GCAGCAACAACA---GC---AGC---------AA..............................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................CAGCAGCAGCAACAACA---GC---AGC---------AA..............................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAC--AAGTGTTGCCGG-GACAACAGTCGCAGCAA-A-----------GGC---TAGCAAAACCACAAGCA---------------------------------------------------GAACAAGCA---GCA---GCAACAGCAGC------AGCAGCAGCAACAAC------------------------AGCGACAGCAGCAA---CATC---------AACAGCAGCAGCAACAGCA-----------------GCAGCGGCAGC------AG------CAGCAG-----------

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

CGC--TGCTGCGGCCGCTG-CGG-TG---------GC---TCAGGAGCAACAT----CGTCAGCAG------------------------------------T---------TGCATC------AACAGCA---GCA---GCAGCATCAGCAGCAGC---A---GCAGCAGCAG------------C---------AGCA---GCAGCAG---CAGC---AGC---AACAGCAACATCAACAGC-----------------AG---CAGCAGC------AG------CAACAG-GCACGC----	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
CGC--TGCTGCGGCCGCTG-CGG-TG---------G............................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
CGC--TGCTGCGGCCGCTG-CGG-TG---------.............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................AACAGCAACATCAACAGC-----------------...........................................	18	3	0.33	1	0	0	1	0
...................................................................................................................................................................................................................................ACAGCAACATCAACAGC-----------------AG---C.....................................	20	3	0.33	1	0	0	1	0
...........................................................................................................................................................................................................................................ATCAACAGC-----------------AG---CAGCAGC------AG------CAAC.............	24	4	0.25	1	0	1	0	0
...................................................................................................................ATC------AACAGCA---GCA---GCAGCATCA...........................................................................................................................................................	22	6	0.17	1	0	0	1	0
.....................................................................................................................................................................................................................................AGCAACATCAACAGC-----------------AG---CAGCAGC------A........................	25	8	0.13	1	0	0	1	0
............................................................................................................................................GCAGCATCAGCAGCAGC---A---GCAGC.......................................................................................................................................	23	10	0.10	1	0	0	1	0
........................................................................................................................................................................................................................................AACATCAACAGC-----------------AG---CAGCAGC------.........................	21	11	0.09	1	0	0	1	0
.....................................................................................................................................................................................................................................AGCAACATCAACAGC-----------------AG---CAG...................................	20	13	0.08	1	0	0	1	0
................................................................................................................................................CATCAGCAGCAGC---A---GCAGCAGCAG------------......................................................................................................................	24	16	0.06	1	0	0	0	1
..................................................................................................................................................TCAGCAGCAGC---A---GCAGCAGCAG------------C---------............................................................................................................	23	19	0.05	1	0	0	1	0
....................................................................................................................................................AGCAGCAGC---A---GCAGCAGCAG------------C---------A...........................................................................................................	22	20	0.05	1	0	0	1	0
.................................................................................................................................................ATCAGCAGCAGC---A---GCAGCAGCA...................................................................................................................................	22	20	0.05	1	0	0	0	1
..........................................................................................................................................................................................................................................CATCAACAGC-----------------AG---CAGCAGC------.........................	19	20	0.05	1	0	0	1	0
..................................................................................................................CATC------AACAGCA---GCA---GCAGC...............................................................................................................................................................	19	20	0.05	1	0	0	1	0
..............................................................................................................................CAGCA---GCA---GCAGCATCAGCA........................................................................................................................................................	20	20	0.05	1	0	0	1	0

droYak3

AGC--AGCAACAACAGCAG-CAA-------------------------------CAACAACAGCAG------------------------------------C---------CCCAAC---AACAACAGCA---GCA---GCAACAGCAGC------AGCAGCAACAACAAC------------------------AGCAGCAGCAACAA---CAGC---AGC---AG---CAGCAACAACAACA-------------ACA-G---CAGCAGC------AG------CAACAG---GTGCACAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................AACA-------------ACA-G---CAGCAGC------AG------CAACAG---GT......	25	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AGCAGCAACAA---CAGC---AGC---AG---CAGC.....................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GCAGCAACAA---CAGC---AGC---AG---C........................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GCAGCAACAA---CAGC---AGC---AG---CAGC.....................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GCAACAACAACA-------------ACA-G---CAGCAGC------AG------C................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................GCAGCAACAACAAC------------------------AGCAGCAGCA..................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................CAAC---AACAACAGCA---GCA---GCA.................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................................................................AACAACA-------------ACA-G---CAGCAGC------AG------CAACAG---........	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................A-G---CAGCAGC------AG------CAACAG---GT......	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................G---CAGCAACAACAACA-------------ACA-G---CAGCAGC------A........................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......GCAACAACAGCAG-CAA-------------------------------CAACAA....................................................................................................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGCAACAACAACA-------------ACA-G---CAGC..................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................CAAC---AACAACAGCA---GCA---G...................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................C---AACAACAGCA---GCA---GCAAC...............................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................AAC---AACAACAGCA---GCA---GCA.................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................ACAA---CAGC---AGC---AG---CAGCAAC..................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................CAACAGCA---GCA---GCAACAGCAGC------AGCA...............................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................ACAA---CAGC---AGC---AG---CAGCAACAAC...............................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AACA-------------ACA-G---CAGCAGC------AG------CA...............	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................GCA---GCA---GCAACAGCAGC------AGCAGCA............................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............AGCAG-CAA-------------------------------CAACAACAGCAG------------------------------------C---------................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............AGCAG-CAA-------------------------------CAACAACAGC................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AACAACA-------------ACA-G---CAGCAGC------AG------CA...............	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGC------AGCAGCAACAACAAC------------------------AGCA........................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................CA---GCA---GCAACAGCAGC------AGCAGCA............................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................AGC------AGCAGCAACAACAAC------------------------AGCAGCAGC...................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GC------AGCAGCAACAACAAC------------------------AGC.........................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................C---AACAACAGCA---GCA---GCAACA..............................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................C---AACAACAGCA---GCA---GCAACAGCAG..........................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCAACAA---CAGC---AGC---AG---CAGC.....................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAACAACAAC------------------------AGCAGCAGC...................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CAACAACA-------------ACA-G---CAGCAGC------A........................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................AACAACAAC------------------------AGCAGCAGCAACAA---CA.........................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AGCAACAACAAC------------------------AGCAGCA.....................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................GCAACAACAAC------------------------AGCAGCAGC...................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................GCAGCAACAACAAC------------------------AGCAGCAGCAAC................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

CGT--GGCTGGGGAGGA-T-CAGCAC----CGCAG-A-----------GCCTCGTTGCAGGGCG---TGCAGGAGAAGCTCACGC---------------------------------------AGCTGCAGATGCA---GCAGC---AGCAC---C---ATC------ACCAGCAACAGCAACAACACC------AGCA---GCAGCAGCAGCAGCAG------------------CA--------------------------ACATCATC------ACCATCAGC-----AGCAAGCGC-A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................AGCAGCAG------------------CA--------------------------ACATCATC------ACCATCAGC-----...........	27	1	1.00	1	1	0	0	0	0	0	0
..........................................................................GAAGCTCACGC---------------------------------------AGCTGCAGATGCA---....................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................GAAGCTCACGC---------------------------------------AGCTGCAGATGCA---GCA.................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
...............GA-T-CAGCAC----CGCAG-A-----------GCCTCGTT........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.....................................................GTTGCAGGGCG---TGCAGGAGAAGCTCA..............................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................................AGCAG------------------CA--------------------------ACATCATC------ACCATC...................	21	3	0.33	1	0	0	0	0	1	0	0
......................................................................................................................................................................................ACAACACC------AGCA---GCAGCAGC.............................................................................................	20	6	0.17	1	0	0	0	0	1	0	0
........................................................................................................................................................................................AACACC------AGCA---GCAGCAGCA............................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
............................................................................................................................................................................................CC------AGCA---GCAGCAGCAGCAGC.......................................................................................	20	20	0.05	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................CACC------AGCA---GCAGCAGCAGCA.........................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................ACACC------AGCA---GCAGCAGCAGC..........................................................................................	20	20	0.05	1	0	1	0	0	0	0	0

-8.3	-8.1	-7.9	-7.9

dmo_1187

scaffold_6496:17141204-17141263 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads