dmo_1178

CDS [Dmoj\GI18777-cds]; CDS [Dmoj\GI18777-cds]; exon [dmoj_GLEANR_3717:4]; exon [dmoj_GLEANR_3717:3]; intron [Dmoj\GI18777-in]

##################################################--------------------------------------------------------------------------################################################## TGTGGGACGCGCCGTAACCATCATGTGTGACCAGAGCTATCCACATACAGGTGAGCAGAGCGACACAATCCCTATAGAGGAGATGTACTTAATTCTCTTTTTCTCTCTCTGTTTCTCTCTCTAGGCTGGTTCAATCAATCCAAGGAGCCGCATTTGCAGCGCGACTATTGCTAT ************************************************..(((.((((.((((..........((((((((..........))))))))........)))).)))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V056 head	V049 head	M060 embryo
..TGGGACGCGCCGTAACCATCATG.....................................................................................................................................................	23	0	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................ATTTGCAGCGCGACTATTGCT..	21	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................TACAGGCTGGTTCAATCAATCC.................................	22	2	1	1.00	1	1	0	0	0	0
...........................................................GCGACACAATCCCTATAGAGGAGATGTA.......................................................................................	28	0	1	1.00	1	0	1	0	0	0
..........................GTGACCAGAGCTATCCAC..................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0
................................................................................................................................GTTCAATCAATCCAAGGAG...........................	19	0	1	1.00	1	0	1	0	0	0
.............GTAACCATCATGTGTGACCAGAGCTA.......................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0
.........................TGTGACCAGAGCTATCCACATACAGGC..........................................................................................................................	27	1	1	1.00	1	0	1	0	0	0
................................................................................................................................GTTCAATCAATCCAAGGAGCCGC.......................	23	0	1	1.00	1	1	0	0	0	0
TGTGGGACGCGCCGTAACC...........................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0
.......CGCGCCGTAACCATCATGTGTGACC..............................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.GTGGGACGCTCCGTAACC...........................................................................................................................................................	18	1	1	1.00	1	1	0	0	0	0
...........................................................................AGAGGAGCTGTACTTAGT.................................................................................	18	2	4	0.25	1	1	0	0	0	0
.................................GACCTATCCACGTCCAGGT..........................................................................................................................	19	3	7	0.14	1	1	0	0	0	0
.......................................................................................................TCTCTCTGTTTCTCTCTCTAGC.................................................	22	1	7	0.14	1	0	0	0	0	1

ACACCCTGCGCGGCATTGGTAGTACACACTGGTCTCGATAGGTGTATGTCCACTCGTCTCGCTGTGTTAGGGATATCTCCTCTACATGAATTAAGAGAAAAAGAGAGAGACAAAGAGAGAGATCCGACCAAGTTAGTTAGGTTCCTCGGCGTAAACGTCGCGCTGATAACGATA ************************************************..(((.((((.((((..........((((((((..........))))))))........)))).)))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V110 male body	V049 head	M046 female body
..............................................................................................................CAAAGAGAGGGATCAGACTA............................................	20	3	5	0.20	1	1	0	0	0
............................................................................................................................CGGCCAAGCTAGGTAGGTT...............................	19	3	9	0.11	1	0	1	0	0
.............................TGGTGTCAATAGGTGTAT...............................................................................................................................	18	2	12	0.08	1	0	0	1	0
........CGCGGCATAGGTTGTGCAC...................................................................................................................................................	19	3	13	0.08	1	0	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:15863702-15863875 -	dmo_1178	TGTGGGACGCGCCGTAACCATCATGTGTGACCAGAGCTATCCACATACAGGTGAGCAGAGC---GA-----CACAATCCC-------------------------------------TATAGAGGAGATGT-ACTTAA-TTCTCTTTTTCTCTCTCTGTT-TCTCTCTCTAGGCTGGTTCAATCAATCCAAGGAGCCGCATTTGCAGCGCGACTATTGCTAT
droVir3	scaffold_12875:11067116-11067281 +		TGTGGGACGCGCCGTAACGGTCATGTGCGACCAGAGCTATCCACACACAGGTGAGATAAAC-ACG------C----------------------TCAAATGC--A------------CGTAAACACAATTT-GCTAA-AACTTCTTT----------CTC-TCTGCGAACAGGCTGGTTCAACCAATCGAAGGAGCCGCATCTGCAGCGGGATTACTGCTAT
droGri2	scaffold_15245:13673351-13673515 -		TGTCGGACGTGCCGTCACCGTCATGAACGATCAGAGCTATCCACACACAGGTAAATATCAT-ATA------C----------------------ATATATATATAT----ATATGCATATAGA--------AGCTAATC-T----TT----------CTC-TCTCTCGCCAGGCTGGTTCAATCAATCGATGGAGCCACATTTGCAGCGTGACTACTGCTAC
droWil2	scf2_1100000004822:1345369-1345522 -		TGTGAGTCGGGCTGTTACCGTTATGATTGATCAAAGCTATCCACATACAGGTAAGTTAATA----CCTAAAAC----TC---T---------------------CTAGAAGATT-----------------AGCTAAAG-T----TT--------------TTTGCTTTCAGGCTGGTTTGGTCAATCGAAGGAACCGCATCTTCAGAGGGATTATTGTTAC
dp5	3:9854913-9855065 -		CGTGAGTCGTGCGGTGACTGTAATGAAGGATCAGAGCTATCCACACACTGGTAAGTCTGCT-TCA------C----------------------AGAAGTGT--ATCGCAG-----------------ATTA-TTAA-GAT------------------T-CTTCCTTGCAGGCTGGTTTACCCAATCGAAGGAGCCGCATCTGCAGCGGGACTACTGCTAC
droPer2	scaffold_4:5172374-5172526 -		CGTGAGTCGTGCGGTGACTGTAATGAAGGATCAGAGCTATCCACACACTGGTAAGTCTGCT-TCA------C----------------------AGAAGTGT--ATCGCAG-----------------ATTA-TTAA-GAT------------------T-CTTCCTTGCAGGCTGGTTTACCCAATCGAAGGAGCCGCATCTGCAGCGGGACTACTGCTAC
droAna3	scaffold_13266:3085193-3085350 +		TGTCAGCCGAGCAGTGACTGTCATGCAGGATCAGAGTTACCCGCACACGGGTAAGTCGACA----TCTTCCTC----TT---CTGTG-AGTC------------------AAGTTTT------------------TATT-T----TT----------TTT-GGTCCTTCCAGGTTGGTTCACCCAGTCCAAGGAGCCCCACTTGCAGCGGGACTACTGCTAC
droBip1	scf7180000396427:1550057-1550214 +		CGTCAGCCGAGCGGTGACCGTCATGCAGGATCAGAGTTATCCACACACGGGTAAGTCTACA----TCTCCCTC----TT---CTGAG-AGTC------------------ATGTCTT------------------GATA-T----TC----------T-ATGATCCTTTCAGGCTGGTTCACCCAATCCAAGGAGCCCCACTTGCAGCGGGACTACTGCTAT
droKik1	scf7180000302471:647763-647920 -		TGTGAGCCGAGCTGTGACTGTCATGCAGGATCAGAGCTATCCTCACACGGGTAAGTTTGCT-------TGATTTA-TCCC-TT--GG-AAAG------------------CTATACT------------------AATT-G----AC----------TTCATA-TTCTCTAGGTTGGTTCACCCAATCGAAGGAGCCCCATCTGCAGCGGGACTACTGCTAC
droFic1	scf7180000454039:1487674-1487833 -		TGTCAGCCGAGCCGTGACCGTTATGCAGGATCAGAGCTATCCACATACGGGTAAGGTTTTAC--ATC-----TTA-ATCCATTT-TT-AAAT------------------GATTACT------------------TACA-G----TT----------TTGA-TCCTTTCCAGGCTGGTTCACCCAATCCAAGGAACCCCATCTGCAGCGCGACTACTGCTAC
droEle1	scf7180000491201:434602-434760 -		TGTCAGTCGAGCCGTGACTGTGATGCAGGACCAGAGCTATCCACACACGGGTGAGTTTGAT-T-AA-----CCTA-CCTCATTT-TG-AAAT------------------GGGTACT------------------TATG-T----TT----------GCG--GGTCTTCCAGGCTGGTTCACCCAATCCAAGGAGCCGCACCTGCAGCGGGACTACTGCTAT
droRho1	scf7180000777843:57461-57619 +		TGTCAGCCGAGCAGTGACCGTAATGCAGGATCAGAGCTATCCCCACACGGGTGAGTTTGAA----ACCCTAATGA-CCCCCTT--CG-AAAT------------------GGGTACT------------------AATC-T----TT--------------AATGTTTTCAGGCTGGTTCACCCAATCCAAGGAGCCCCACCTGCAGCGGGACTATTGCTAT
droBia1	scf7180000302291:3117296-3117453 +		TGTCAGCCGGGCAGTGACGGTGATGCAGGATCAGAGCTATCCCCACACGGGTAAGTTTTAA----GCCCCACC----CCT--CT-TTG-GGC------------------GTATACT------------------CATG-G----TG----------TTC-GGTATTTCCAGGCTGGTTCACCCAATCCAAGGAGCCGCGTCTGCAGCGGGACTACTGCTAC
droTak1	scf7180000415159:247964-248024 +		TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCCAGGCTGGTTCACCCAATCCAAGGAGCCGCATCTGCAGCGGGACTATTGCTAT
droEug1	scf7180000409474:1778424-1778584 +		TGTCAGTCGGGCGGTGACTGTTATGCAGGATCAGAGCTATCCACATACAGGTGAGTTGTAAC--CTCTCCACTTT-C-----CT-AAT-AAT------------------GTAAACT------------------TATG-G----AT----------CTTATGTATCTCCAGGCTGGTTCACCCAATCCAAGGAGCCGCATTTGCAAAGAGATTATTGCTAT
dm3	chr2R:16197639-16197804 -		TGTCAGCCGAGCGGTGACTGTTATGCAGGATCAGAGCTATCCGCACACTGGTGAGTTGTAA----TCTCCGCTTA-GCCTATT---GT-AATACAT--------------ATATACT------------------GATG-G----AT----------GCAATATGTTTCTAGGCTGGTTCACCCAATCCAAGGAGCCGCATCTGCAGCGTGATTATTGCTAT
droSim2	2r:16777554-16777717 -	dsi_27477	TGTCAGCCGGGCGGTGACTGTTATGCAGGATCAGAGCTATCCGCACACTGGTAAGTTGTAA----TCTTCACTTA-GCCTATT---GT-AATGA----------------ATATACT------------------GATG-G----TT----------GCAACATGTTTCTAGGCTGGTTCACCCAATCCAAGGAGCCGCATCTGCAGCGTGATTATTGCTAT
droSec2	scaffold_1:13763492-13763655 -		TGTCAGCCGGGCGGTGACTGTTATGCAGGATCAGAGCTATCCGCACACTGGTAAGTCGTAA----TCTCCACTTA-GCCTATT---GT-AATAA----------------ATATACT------------------GATG-G----TT----------GCAACATGTTTCTAGGCTGGTTCACGCAATCCAAGGAGCCGCATCTGCAGCGTGATTATTGCTAT
droYak3	2R:13005166-13005327 +		TGTCAGCAGGGCGGTGACTGTTATGCAGGATCAAAGCTATCCGCATACTGGTGAGTTTCCA----TCTCCAAATA-CCCAAAT---GT-AAT------------------GTATACT------------------CATG-G----CT----------CCCAAATGTTTTCAGGCTGGTTCACCCAATCCAAGGAGCCGCATCTGCAGCGTGATTATTGCTAT
droEre2	scaffold_4845:10348859-10349020 -		TGTCAGCAGGGCGGTGACTGTTATGCAGGATCAAAGCTATCCGCATACTGGTGAGTTGCAA----TCTCCAAATA-CCCTAAT---TT-CTT------------------GTATACT------------------CATG-G----CC----------CCAATATGTTTCCAGGCTGGTTCACCCAATCCAAGGAGCCGCATCTGCAGCGCGATTATTGCTAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TGTGGGACGCGCCGTAACCATCATGTGTGACCAGAGCTATCCACATACAGGTGAGCAGAGC---GA-----CACAATCCC-------------------------------------TATAGAGGAGATGT-ACTTAA-TTCTCTTTTTCTCTCTCTGTT-TCTCTCTCTAGGCTGGTTCAATCAATCCAAGGAGCCGCATTTGCAGCGCGACTATTGCTAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..TGGGACGCGCCGTAACCATCATG.....................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................ATTTGCAGCGCGACTATTGCT..	21	1	1.00	1	1	0	0	0	0	0
...........................................................GC---GA-----CACAATCCC-------------------------------------TATAGAGGAGATGT-A.........................................................................................	28	1	1.00	1	0	0	0	0	0	1
..........................GTGACCAGAGCTATCCAC..................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................GTTCAATCAATCCAAGGAG...........................	19	1	1.00	1	0	0	0	0	0	1
.............GTAACCATCATGTGTGACCAGAGCTA.......................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0
.........................TGTGACCAGAGCTATCCACATACAGGC..........................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................GTTCAATCAATCCAAGGAGCCGC.......................	23	1	1.00	1	1	0	0	0	0	0
TGTGGGACGCGCCGTAACC...........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
.......CGCGCCGTAACCATCATGTGTGACC..............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................TCTCTCTGTT-TCTCTCTCTAGC.................................................	22	7	0.14	1	0	0	0	0	1	0

droVir3

TGTGGGACGCGCCGTAACGGTCATGTGCGACCAGAGCTATCCACACACAGGTGAGATAAAC-ACG------C----------------------TCAAATGC--A------------CGTAAACACAATTT-GCTAA-AACTTCTTT----------CTC-TCTGCGAACAGGCTGGTTCAACCAATCGAAGGAGCCGCATCTGCAGCGGGATTACTGCTAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................AACCAATCGAAGGAGCCGC.......................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................................................................................ATCTGCAGCGGGATTACTGCT..	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................TGTGCGACCAGAGCTATCCA...................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CGAAGGAGCCGCATCTGCAGCGGGA..........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGTGGGACGCGCCGTAACGGTCATGT....................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GTAACGGTCATGTGCGACCAGAG..........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGTGCGACCAGAGCTATCCA...................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGTGCGACCAGAGCTATCCACA.................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGTGCGACCAGAGCTATC.....................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CCGTAACGGTCATGTGCGACCAGAG..........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CATGTGCGACCAGAGCTATCC....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GGTTCAACCAATCGAAGGA............................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CATGTGCGACCAGAGCTATCCACACACA.............................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TGGTTCAACCAATCGAAGGAGC..........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGTGCGACCAGAGCTATCCAC..................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CAATCGAAGGAGCCGCATCTGCAGC..............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GTAACGGTCATGTGCGACCAGAGC.........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CAACCAATCGAAGGAGCCGCATCTGC.................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....GACGCGCCGTAACGGTCATGTGC..................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................A-AACTTCTTT----------CTC-TCTGCGAAC....................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTGCGACCAGAGCTATCCACA.................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GTGGGACGCGCCGTAACGGT.........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AACGGTCATGTGCGACCAGAGCTATCCACACACAG............................................................................................................................................................................	35	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................GTCATGTGCGACCAGAGCTAT......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CGCGCCGTAACGGTCATGT....................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................GCCGCATCTGCAGCGGGATTACTGCT..	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GACCAGAGCTATCCACACACAGGC..........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................GAAGGAGCCGCATCTGCAGC..............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CATGTGCGACCAGAGCTATCCAC..................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CCGCATCTGCAGCGGGATTACTGCT..	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TCTTT----------CTC-TCTGCGAACAG..................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CATCTGCAGCGGGATTACTGCTAT	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CCAATCGAAGGAGCCGCATCTGC.................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................GTGCGACCAGAGCTATCC....................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................CAGGCTGGTTCAACC......................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CTGCAGCGGGATTACTGCT..	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AGAGCTATCCACACACAGGCTG........................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TGTCGGACGTGCCGTCACCGTCATGAACGATCAGAGCTATCCACACACAGGTAAATATCAT-ATA------C----------------------ATATATATATAT----ATATGCATATAGA--------AGCTAATC-T----TT----------CTC-TCTCTCGCCAGGCTGGTTCAATCAATCGATGGAGCCACATTTGCAGCGTGACTACTGCTAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TGTGAGTCGGGCTGTTACCGTTATGATTGATCAAAGCTATCCACATACAGGTAAGTTAATA----CCTAAAAC----TC---T---------------------CTAGAAGATT-----------------AGCTAAAG-T----TT--------------TTTGCTTTCAGGCTGGTTTGGTCAATCGAAGGAACCGCATCTTCAGAGGGATTATTGTTAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................GTTATGATTGATCAAAGCT........................................................................................................................................................................................	19	1	8.00	8	8	0	0	0	0
...................GTTATGATTGATCAAAGC.........................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0
...............................................................................................................................................................................GGTTTGGTCAATCGAAGGAACC.........................	22	1	3.00	3	2	0	0	1	0
.............GTTACCGTTATGATTGATCA.............................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0
.............GTTACCGTTATGATTGATCAAAGC.........................................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0
.................................................................................................................................................................................................AACCGCATCTTCAGAGGGATT........	21	1	2.00	2	0	0	1	1	0
............TGTTACCGTTATGATTGATCAAAGCT........................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0
....................TTATGATTGATCAAAGCT........................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
............................GATCAAAGCTATCCACATACAGGCT.........................................................................................................................................................................	25	1	2.00	2	0	0	1	1	0
.......................................................................................................................................................................................................ATCTTCAGAGGGATTATT.....	18	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................TTGGTCAATCGAAGGAAC..........................	18	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................ATCGAAGGAACCGCATCTT..................	19	1	1.00	1	0	1	0	0	0
...............TACCGTTATGATTGATCAAAGCTATC.....................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...................GTTATGATTGATCAAAGCTATC.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....................TTATGATTGATCAAAGCTATC.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.........GGCTGTTACCGTTATGATTG.................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.............GTTACCGTTATGATTGATCAAAGCT........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
...............TACCGTTATGATTGATCAAA...........................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................CTTCAGAGGGATTATTGTTA.	20	1	1.00	1	0	0	1	0	0
.....GTCGGGCTGTTACCGTTATGATTGATC..............................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
......................ATGATTGATCAAAGCTAT......................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.................................AAGCTATCCACATACAGGCT.........................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................GAACCGCATCTTCAGAGGG...........	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................ATCGAAGGAACCGCATCTTCAGAGG............	25	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................GTTTGGTCAATCGAAGGAACC.........................	21	1	1.00	1	0	0	0	0	1
...GAGTCGGGCTGTTACCGT.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................AGCTATCCACATACAGGCT.........................................................................................................................................................................	19	2	1.00	2	0	1	0	1	0
..................CGTTATGATTGATCAAAGCC........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................CGAAGGAACCGCATCTTCAGAGGGAT.........	26	1	1.00	1	0	0	0	1	0
...............TACCGTTATGATTGATCAAAGC.........................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
.GTGAGTCGGGCTGTTACCGTTATG.....................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................ATCGAAGGAACCGCATCTTCAGAGGG...........	26	1	1.00	1	0	0	0	1	0
...............TACCGTTATGATTGATCAAAGCT........................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
.............GTTACCGTTATGATTGATC..............................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
................................AAAGCTATCCACATACAGGCT.........................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
............TGTTACCGTTATGATTGA................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
..................................................GTAAGTTAATA----CCTAAAAC----TC---T---------------------C.....................................................................................................................	23	1	1.00	1	0	1	0	0	0
................ACCGTTATGATTGATCAAAG..........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................CGAAGGAACCGCATCTTCAGAG.............	22	1	1.00	1	0	1	0	0	0
.............................ATCAAAGCTATCCACATAC..............................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............GTTACCGTTATGATTGATCAAAG..........................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..................CGTTATGATTGATCAAAGCTATC.....................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................CGAAGGAACCGCATCTTCAGAGG............	23	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................GGTTTGGTCAATCGAAGGA............................	19	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................TCTTCAGAGGGATTATTGTTAC	22	1	1.00	1	0	0	0	0	1
...................................GCTATCCACATACAGGCT.........................................................................................................................................................................	18	3	0.33	1	0	1	0	0	0

dp5

CGTGAGTCGTGCGGTGACTGTAATGAAGGATCAGAGCTATCCACACACTGGTAAGTCTGCT-TCA------C----------------------AGAAGTGT--ATCGCAG-----------------ATTA-TTAA-GAT------------------T-CTTCCTTGCAGGCTGGTTTACCCAATCGAAGGAGCCGCATCTGCAGCGGGACTACTGCTAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................TGTAATGAAGGATCAGAGC.........................................................................................................................................................................................	19	1	3.00	3	0	0	1	0	1	0	0	0	0	1
.GTGAGTCGTGCGGTGACTGT.........................................................................................................................................................................................................	20	1	3.00	3	0	2	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................AGGAGCCGCATCTGCAGCGGGA..........	22	1	2.00	2	0	0	0	0	2	0	0	0	0	0
................................AGAGCTATCCACACACTGGCT.........................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...............GACTGTAATGAAGGATCAGAGCT........................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................................AT------------------T-CTTCCTTGCAGGCTGGTTTACC.......................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0
............................................................................................................................................................................................GAAGGAGCCGCATCTGCAGC..............	20	1	2.00	2	0	1	0	0	0	1	0	0	0	0
..............................................................................................................G-----------------ATTA-TTAA-GAT------------------T-CTTCCTTGCAG..................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0
....................................................................................................................................................................................ACCCAATCGAAGGAGCCGC.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GAAGGAGCCGCATCTGCAGCGGGACTACT.....	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0
........GTGCGGTGACTGTAATGAAGG.................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................GATCAGAGCTATCCACACACTGGTAA........................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................ATCAGAGCTATCCACACACC.............................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................G-----------------ATTA-TTAA-GAT------------------T-CTTCCTTGCA...................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GTGCGGTGACTGTAATGAAGGATC..............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
......................ATGAAGGATCAGAGCTATCCACACACC.............................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................ACTGTAATGAAGGATCAG............................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................TGTAATGAAGGATCAGAG..........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............GGTGACTGTAATGAAGGATCAGAGC.........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................ACCCAATCGAAGGAGCCGCATC....................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........GTGCGGTGACTGTAATGAAG..................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............GTGACTGTAATGAAGGATCAGAGCTATC.....................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........GCGGTGACTGTAATGAAG..................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................CGAAGGAGCCGCATCTGCA................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................TTACCCAATCGAAGGAGCCGCAT.....................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................GATCAGAGCTATCCACACACTGGCT.........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GTGAGTCGTGCGGTGACTGTAA.......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......TCGTGCGGTGACTGTAATGAAGG.................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............GTGACTGTAATGAAGGATCAGAGCT........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................TATCCACACACTGGTAAGTCTGCT-T...............................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............GTGACTGTAATGAAGGATCAG............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................ATGAAGGATCAGAGCTATCCA...................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CGAAGGAGCCGCATCTGCAGCGGGACT........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................GAAGGAGCCGCATCTGCAGCGGGAC.........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................GAAGGAGCCGCATCTGCAG...............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
............................GATCAGAGCTATCCACACACTGG...........................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............GTGACTGTAATGAAGGATCAGAGC.........................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................ATCAGAGCTATCCACACACTGAC..........................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......CGTGCGGTGACTGTAATGAA...................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............GGTGACTGTAATGAAGGATCAGA...........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................CGAAGGAGCCGCATCTGCAGCGGG...........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................CGAAGGAGCCGCATCTGCAGC..............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............GGTGACTGTAATGAAGGATC..............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................GTTTACCCAATCGAAGGAGC..........................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................TTA-TTAA-GAT------------------T-CTTCCTTGCAG..................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................GTAATGAAGGATCAGAGCT........................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................GGCTGGTTTACCCAATCGAAGGAGC..........................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................ACACACTGGTAAGTCTGCT-TCA------C----------------------A...............................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................ATCAGAGCTATCCACACACT.............................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................CGCATCTGCAGCGGGACTACTGCT..	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................TCGAAGGAGCCGCATCTGCAGC..............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................TACCCAATCGAAGGAGCCGC.......................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................TTTACCCAATCGAAGGAGCC.........................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................AGCTATCCACACACTGGCT.........................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGTGAGTCGTGCGGTGACTGTAATGAAGGATCAGAGCTATCCACACACTGGTAAGTCTGCT-TCA------C----------------------AGAAGTGT--ATCGCAG-----------------ATTA-TTAA-GAT------------------T-CTTCCTTGCAGGCTGGTTTACCCAATCGAAGGAGCCGCATCTGCAGCGGGACTACTGCTAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................GGTTTACCCAATCGAAGGAGC..........................	21	1	11.00	11	10	1	0	0	0	0
...................GTAATGAAGGATCAGAGCT........................................................................................................................................................................................	19	1	10.00	10	10	0	0	0	0	0
................................................................................................................................................................................GTTTACCCAATCGAAGGAGCC.........................	21	1	7.00	7	7	0	0	0	0	0
...............................................................................................................................................................................GGTTTACCCAATCGAAGGAGCC.........................	22	1	6.00	6	6	0	0	0	0	0
...................GTAATGAAGGATCAGAGC.........................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
.................CTGTAATGAAGGATCAGAGCT........................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................................................TTACCCAATCGAAGGAGC..........................	18	1	2.00	2	2	0	0	0	0	0
.......CGTGCGGTGACTGTAATGAAG..................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
........GTGCGGTGACTGTAATGAAG..................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0
............GGTGACTGTAATGAAGGATC..............................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
................................................................A------C----------------------AGAAGTGT--ATCGCAG-----------------ATT...........................................................................................	20	1	1.00	1	1	0	0	0	0	0
........GTGCGGTGACTGTAATGAAGG.................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................TTACCCAATCGAAGGAGCC.........................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................CGAAGGAGCCGCATCTGCAGCGG............	23	1	1.00	1	0	0	1	0	0	0
..........GCGGTGACTGTAATGAAGGATC..............................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............GACTGTAATGAAGGATCAGAGCT........................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............GGTGACTGTAATGAAGGAT...............................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................GTTTACCCAATCGAAGGAGCCGC.......................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................CGAAGGAGCCGCATCTGCAGCGGGA..........	25	1	1.00	1	0	0	0	0	0	1
........GTGCGGTGACTGTAATGAAGGATC..............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
CGTGAGTCGTGCGGTGACT...........................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
CGTGAGTCGTGCGGTGACTGTAA.......................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................TACCCAATCGAAGGAGCC.........................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................TTACCCAATCGAAGGAGCCG........................	20	1	1.00	1	1	0	0	0	0	0
CGTGAGTCGTGCGGTGAC............................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.................CTGTAATGAAGGATCAGAGC.........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.GTGAGTCGTGCGGTGACT...........................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................CGAAGGAGCCGCATCTGCAGCGGGACT........	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................TAA-GAT------------------T-CTTCCTTGCAGG.................................................	19	1	1.00	1	0	0	0	0	1	0
...................GTAATGAAGGATCAGAGCG........................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0

droAna3

TGTCAGCCGAGCAGTGACTGTCATGCAGGATCAGAGTTACCCGCACACGGGTAAGTCGACA----TCTTCCTC----TT---CTGTG-AGTC------------------AAGTTTT------------------TATT-T----TT----------TTT-GGTCCTTCCAGGTTGGTTCACCCAGTCCAAGGAGCCCCACTTGCAGCGGGACTACTGCTAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................TTGGTTCACCCAGTCCAAGGAGCCCCA......................	27	1	2.00	2	0	0	0	0	0	2
.............GTGACTGTCATGCAGGATCAGA...........................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................ACTTGCAGCGGGACTACTGC...	20	1	2.00	2	0	2	0	0	0	0
...................................................................................................................................................................................CACCCAGTCCAAGGAGCCCCA......................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................AAGGAGCCCCACTTGCAGCGGGAC.........	24	1	1.00	1	0	1	0	0	0	0
.......CGAGCAGTGACTGTCATGCAGG.................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................CTTGCAGCGGGACTACTGCT..	20	1	1.00	1	0	1	0	0	0	0
............AGTGACTGTCATGCAGGATCAGAGT.........................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................TGCAGGATCAGAGTTACCCGC..................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................GTCCAAGGAGCCCCACTTGCAGCGGGAC.........	28	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................ACCCAGTCCAAGGAGCCCCAC.....................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................GGTTCACCCAGTCCAAGGAGC..........................	21	1	1.00	1	0	1	0	0	0	0
......................ATGCAGGATCAGAGTTACCCGCA.................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...............................CAGAGTTACCCGCACACGG............................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
..................TGTCATGCAGGATCAGAGTT........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
....AGCCGAGCAGTGACTGTCATGCAGGAT...............................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
....AGCCGAGCAGTGACTGTCATGCAG..................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................GTTCACCCAGTCCAAGGAGC..........................	20	1	1.00	1	0	1	0	0	0	0

droBip1

CGTCAGCCGAGCGGTGACCGTCATGCAGGATCAGAGTTATCCACACACGGGTAAGTCTACA----TCTCCCTC----TT---CTGAG-AGTC------------------ATGTCTT------------------GATA-T----TC----------T-ATGATCCTTTCAGGCTGGTTCACCCAATCCAAGGAGCCCCACTTGCAGCGGGACTACTGCTAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGTGAGCCGAGCTGTGACTGTCATGCAGGATCAGAGCTATCCTCACACGGGTAAGTTTGCT-------TGATTTA-TCCC-TT--GG-AAAG------------------CTATACT------------------AATT-G----AC----------TTCATA-TTCTCTAGGTTGGTTCACCCAATCGAAGGAGCCCCATCTGCAGCGGGACTACTGCTAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTCAGCCGAGCCGTGACCGTTATGCAGGATCAGAGCTATCCACATACGGGTAAGGTTTTAC--ATC-----TTA-ATCCATTT-TT-AAAT------------------GATTACT------------------TACA-G----TT----------TTGA-TCCTTTCCAGGCTGGTTCACCCAATCCAAGGAACCCCATCTGCAGCGCGACTACTGCTAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGTCAGTCGAGCCGTGACTGTGATGCAGGACCAGAGCTATCCACACACGGGTGAGTTTGAT-T-AA-----CCTA-CCTCATTT-TG-AAAT------------------GGGTACT------------------TATG-T----TT----------GCG--GGTCTTCCAGGCTGGTTCACCCAATCCAAGGAGCCGCACCTGCAGCGGGACTACTGCTAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGTCAGCCGAGCAGTGACCGTAATGCAGGATCAGAGCTATCCCCACACGGGTGAGTTTGAA----ACCCTAATGA-CCCCCTT--CG-AAAT------------------GGGTACT------------------AATC-T----TT--------------AATGTTTTCAGGCTGGTTCACCCAATCCAAGGAGCCCCACCTGCAGCGGGACTATTGCTAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTCAGCCGGGCAGTGACGGTGATGCAGGATCAGAGCTATCCCCACACGGGTAAGTTTTAA----GCCCCACC----CCT--CT-TTG-GGC------------------GTATACT------------------CATG-G----TG----------TTC-GGTATTTCCAGGCTGGTTCACCCAATCCAAGGAGCCGCGTCTGCAGCGGGACTACTGCTAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCCAGGCTGGTTCACCCAATCCAAGGAGCCGCATCTGCAGCGGGACTATTGCTAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGTCAGTCGGGCGGTGACTGTTATGCAGGATCAGAGCTATCCACATACAGGTGAGTTGTAAC--CTCTCCACTTT-C-----CT-AAT-AAT------------------GTAAACT------------------TATG-G----AT----------CTTATGTATCTCCAGGCTGGTTCACCCAATCCAAGGAGCCGCATTTGCAAAGAGATTATTGCTAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGTCAGCCGAGCGGTGACTGTTATGCAGGATCAGAGCTATCCGCACACTGGTGAGTTGTAA----TCTCCGCTTA-GCCTATT---GT-AATACAT--------------ATATACT------------------GATG-G----AT----------GCAATATGTTTCTAGGCTGGTTCACCCAATCCAAGGAGCCGCATCTGCAGCGTGATTATTGCTAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................GTTATGCAGGATCAGAGCTATCC....................................................................................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGCAGGATCAGAGCTATC.....................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AATCCAAGGAGCCGCATCTGC.................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ACCCAATCCAAGGAGCCGCATCTGC.................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................CCAAGGAGCCGCATCTGC.................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGCAGGATCAGAGCTATCCGCA.................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTCACCCAATCCAAGGAGCCGCA......................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AAGGAGCCGCATCTGCAGC..............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AGGAGCCGCATCTGCAGCGT............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................GCTATCCGCACACTGGCT.........................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GAGCTATCCGCACACTGGCTG........................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGCGGTGACTGTTATGCAATC................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGTCAGCCGGGCGGTGACTGTTATGCAGGATCAGAGCTATCCGCACACTGGTAAGTTGTAA----TCTTCACTTA-GCCTATT---GT-AATGA----------------ATATACT------------------GATG-G----TT----------GCAACATGTTTCTAGGCTGGTTCACCCAATCCAAGGAGCCGCATCTGCAGCGTGATTATTGCTAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................TCAGAGCTATCCGCACACTG............................................................................................................................................................................	20	1	6.00	6	4	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AGAGCTATCCGCACACTG............................................................................................................................................................................	18	1	6.00	6	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTGTTATGCAGGATCAGAGCTATCC....................................................................................................................................................................................	25	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ATG-G----TT----------GCAACATGTTTCTAG..................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0
.............................ATCAGAGCTATCCGCACACTG............................................................................................................................................................................	21	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................G-G----TT----------GCAACATGTTTCTAGGCTG..............................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................GCAACATGTTTCTAGGCT...............................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGTCAGCCGGGCGGTGACT...........................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTGTTATGCAGGATCAGAGCT........................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................CT------------------GATG-G----TT----------GCAACATGTTTCTAG..................................................	24	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAGAGCTATCCGCACACTGGCTG........................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GACTGTTATGCAGGATCAGAGCT........................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CGCATCTGCAGCGTGATTATTG....	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................TACT------------------GATG-G----TT----------GCAACATGT........................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CTGCAGCGTGATTATTGCT..	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................TG-G----TT----------GCAACATGTTTCTAG..................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................GATCAGAGCTATCCGCACACTGGCTG........................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACTGTTATGCAGGATCAGAGCT........................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TA-GCCTATT---GT-AATGA----------------ATATACT------------------G......................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AGGAGCCGCATCTGCAGCGTGATTAT......	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................ACT------------------GATG-G----TT----------GCAACATGTTTCTAG..................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TGTTATGCAGGATCAGAGCT........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................GTTATGCAGGATCAGAGCC........................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CGGTGACTGTTATGCAGGATC..............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................G-G----TT----------GCAACATGTTTCTAGA.................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................AACATGTTTCTAGGCTGGTTCAC........................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GATG-G----TT----------GCAACATGTTT......................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGCAGGATCAGAGCTATC.....................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GTTATGCAGGATCAGAGCT........................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GGTTCACCCAATCCAAGGAGCC.........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ATCCAAGGAGCCGCATCTGCAGCGTGAT.........	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................TGCAGGATCAGAGCT........................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TGTCAGCCGGGCGGTGACTGTTATGCAGGATCAGAGCTATCCGCACACTGGTAAGTCGTAA----TCTCCACTTA-GCCTATT---GT-AATAA----------------ATATACT------------------GATG-G----TT----------GCAACATGTTTCTAGGCTGGTTCACGCAATCCAAGGAGCCGCATCTGCAGCGTGATTATTGCTAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................GTTATGCAGGATCAGAGCTATCC....................................................................................................................................................................................	23	1	3.00	3	0	1	2	0
...................GTTATGCAGGATCAGAGC.........................................................................................................................................................................................	18	1	3.00	3	0	0	3	0
..............................................................................................................................................................................................AGGAGCCGCATCTGCAGCGTGAT.........	23	1	2.00	2	0	0	2	0
.......................TGCAGGATCAGAGCTATCC....................................................................................................................................................................................	19	1	2.00	2	0	0	1	1
.GTCAGCCGGGCGGTGACT...........................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
.............................................................................................................................................................................................AAGGAGCCGCATCTGCAGC..............	19	1	2.00	2	0	0	2	0
..........................................................................................................................................................................................................TGCAGCGTGATTATTGCT..	18	1	2.00	2	0	0	2	0
......................ATGCAGGATCAGAGCTATC.....................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
......................................................................................................................................................................................GCAATCCAAGGAGCCGCATCTGCAG...............	25	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................TCTGCAGCGTGATTATTGCT..	20	1	1.00	1	0	0	1	0
..................................................................................................................................................................................TCACGCAATCCAAGGAGCCGC.......................	21	1	1.00	1	0	0	1	0
................................................................................................................................................................................................GAGCCGCATCTGCAGCGTG...........	19	1	1.00	1	1	0	0	0
..............TGACTGTTATGCAGGATCAGA...........................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
............................GATCAGAGCTATCCGCACACTGG...........................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..................................................................................................................................................................................TCACGCAATCCAAGGAGCCGCA......................	22	1	1.00	1	0	0	1	0
................ACTGTTATGCAGGATCAGAGC.........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.......................TGCAGGATCAGAGCTATCCGCACAC..............................................................................................................................................................................	25	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................AGGAGCCGCATCTGCAGCGTGATTATTGC...	29	1	1.00	1	0	1	0	0
..........GCGGTGACTGTTATGCAGGATCAGA...........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................ATCTGCAGCGTGATTATTGC...	20	1	1.00	1	0	0	1	0
.........................................................................................................................................TG-G----TT----------GCAACATGTTTCTAGGCTG..............................................	24	1	1.00	1	0	0	0	1
.....GCCGGGCGGTGACTGTTATGC....................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
....................................................................................................................................................................................ACGCAATCCAAGGAGCCGCATC....................	22	1	1.00	1	0	0	1	0
....................TTATGCAGGATCAGAGCTATCC....................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
................................................................................................................................................................................GTTCACGCAATCCAAGGAGCCGCA......................	24	1	1.00	1	0	0	1	0
..................TGTTATGCAGGATCAGAGC.........................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
....AGCCGGGCGGTGACTGTTATGCAG..................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................AAGGAGCCGCATCTGCAGCGTG...........	22	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................GCCGCATCTGCAGCGTGATTATTGCT..	26	1	1.00	1	0	0	1	0
........................................................................................................................................................................................AATCCAAGGAGCCGCATCT...................	19	1	1.00	1	0	0	1	0
................................................................................................................................................................................GTTCACGCAATCCAAGGAGC..........................	20	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................ATCTGCAGCGTGATTATTGCT..	21	1	1.00	1	0	0	1	0
.......................TGCAGGATCAGAGCTATC.....................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........................................................................................................................................TG-G----TT----------GCAACATGTTTCTAGGCTGGTT...........................................	27	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................CCAAGGAGCCGCATCTGCAGC..............	21	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................GCATCTGCAGCGTGATTATTG....	21	1	1.00	1	0	0	1	0
...................................................................................................................................................................................CACGCAATCCAAGGAGCCG........................	19	1	1.00	1	0	0	1	0
...............GACTGTTATGCAGGATCAGAGCTATCC....................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...................GTTATGCAGGATCAGAGCTATCCGC..................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...............................................................................................................................................................................GGTTCACGCAATCCAAGGAGC..........................	21	1	1.00	1	0	0	1	0
............................................................................................................................................................................................CAAGGAGCCGCATCTGCAGCGTGATT........	26	1	1.00	1	0	0	1	0
....................................................................................................................................................................................ACGCAATCCAAGGAGCCGC.......................	19	1	1.00	1	0	0	1	0
..................................AGCTATCCGCACACTGGCT.........................................................................................................................................................................	19	6	0.17	1	0	0	1	0

droYak3

TGTCAGCAGGGCGGTGACTGTTATGCAGGATCAAAGCTATCCGCATACTGGTGAGTTTCCA----TCTCCAAATA-CCCAAAT---GT-AAT------------------GTATACT------------------CATG-G----CT----------CCCAAATGTTTTCAGGCTGGTTCACCCAATCCAAGGAGCCGCATCTGCAGCGTGATTATTGCTAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................AAGGAGCCGCATCTGCAGCGTGATT........	25	1	26.00	26	0	0	0	0	0	0	0	0	0	0	26
.................CTGTTATGCAGGATCAAAGCTATCCGC..................................................................................................................................................................................	27	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
...CAGCAGGGCGGTGACTGTTATGCAGGAT...............................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2
........................................................................................................................................................................................AATCCAAGGAGCCGCATCTGCAGCGT............	26	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CAAGGAGCCGCATCTGCAGCGT............	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................ATCAAAGCTATCCGCATACTGGCT.........................................................................................................................................................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................CCAAGGAGCCGCATCTGCAGCGT............	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................................CAAGGAGCCGCATCTGCAGC..............	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.GTCAGCAGGGCGGTGACT...........................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................TGTTATGCAGGATCAAAGCT........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................GAGCCGCATCTGCAGCGTGATTATTG....	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................ATCTGCAGCGTGATTATTGCTAT	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................GGTTCACCCAATCCAAGGAGCCGC.......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............GGTGACTGTTATGCAGGA................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.GTCAGCAGGGCGGTGACTGTTAT......................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................CATCTGCAGCGTGATTATTG....	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........................GCAGGATCAAAGCTATCCGCATACTGGCT.........................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTCACCCAATCCAAGGAGCCGCA......................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
....................TTATGCAGGATCAAAGCTATC.....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TCACCCAATCCAAGGAGCC.........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................GTTATGCAGGATCAAAGCTATCC....................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................GTTATGCAGGATCAAAGCC........................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AAGGAGCCGCATCTGCAGCGTGATTATT.....	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....GCAGGGCGGTGACTGTTATGCA...................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....AGCAGGGCGGTGACTGTTATGC....................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................CAAAGCTATCCGCATACTGGCT.........................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AGGAGCCGCATCTGCAGCGTGATTAT......	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................AAGGAGCCGCATCTGCAGC..............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................GATCAAAGCTATCCGCATACTGGCTG........................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AAGGAGCCGCATCTGCAGCGT............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................CACCCAATCCAAGGAGCC.........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...CAGCAGGGCGGTGACTGTTATGCAG..................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................GTTCACCCAATCCAAGGAGCCGC.......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GGAGCCGCATCTGCAGCGT............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTGGTTCACCCAATCCAAGGAGC..........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................TATGCAGGATCAAAGCTATCCGC..................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GGTTCACCCAATCCAAGGAGCCG........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GTTCACCCAATCCAAGGAGCCG........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TG-G----CT----------CCCAAATGTTTTCAG..................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................GATCAAAGCTATCCGCATACTGGCT.........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................AAT------------------GTATACT------------------CATG-G----CT----------CCCAAATGTT.......................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................TATGCAGGATCAAAGCTATCCG...................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................GCTGGTTCACCCAATCCAAGGAGC..........................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................GATCAAAGCTATCCGCATACTGGC..........................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...CAGCAGGGCGGTGACTGTTAT......................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AGGAGCCGCATCTGCAGCGTGAT.........	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...............GACTGTTATGCAGGATCAAAGCT........................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................ATCAAAGCTATCCGCATACTGGCTG........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CACCCAATCCAAGGAGCCGCATC....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CACCCAATCCAAGGAGCCGC.......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................GTTATGCAGGATCAAAGC.........................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................GTTCACCCAATCCAAGGAGCC.........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................ATCAAAGCTATCCGCATACTGGC..........................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................TCAAAGCTATCCGCATACTG............................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TGTCAGCAGGGCGGTGACTGTTATGCAGGATCAAAGCTATCCGCATACTGGTGAGTTGCAA----TCTCCAAATA-CCCTAAT---TT-CTT------------------GTATACT------------------CATG-G----CC----------CCAATATGTTTCCAGGCTGGTTCACCCAATCCAAGGAGCCGCATCTGCAGCGCGATTATTGCTAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................ATCCAAGGAGCCGCATCTGC.................	20	1	3.00	3	0	0	0	0	2	1	0
...............GACTGTTATGCAGGATCAAAGCTATCCGC..................................................................................................................................................................................	29	1	2.00	2	0	1	0	0	1	0	0
................................................................................................................................................................................GTTCACCCAATCCAAGGAGCCGC.......................	23	1	2.00	2	0	1	0	0	1	0	0
..................................................................................................................................................................................TCACCCAATCCAAGGAGCC.........................	19	1	1.00	1	0	1	0	0	0	0	0
...............................CAAAGCTATCCGCATACTG............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................ATCCAAGGAGCCGCATCTGCAGCGC............	25	1	1.00	1	0	0	0	0	0	1	0
TGTCAGCAGGGCGGTGACTGTTA.......................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................AGGAGCCGCATCTGCAGCGCGATT........	24	1	1.00	1	0	0	0	0	1	0	0
............................GATCAAAGCTATCCGCATACTGGCTG........................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................GTTCACCCAATCCAAGGAGC..........................	20	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................CCAAGGAGCCGCATCTGCAGCGCGA..........	25	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................TG-G----CC----------CCAATATGTTTCCAG..................................................	20	1	1.00	1	0	0	0	1	0	0	0
............................................................................................................................................................................................CAAGGAGCCGCATCTGCAG...............	19	1	1.00	1	1	0	0	0	0	0	0
......................ATGCAGGATCAAAGCTAT......................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................TTCACCCAATCCAAGGAGCCGC.......................	22	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................GTTCACCCAATCCAAGGAGCC.........................	21	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................AAGGAGCCGCATCTGCAGC..............	19	1	1.00	1	0	0	0	0	0	1	0
..................TGTTATGCAGGATCAAAGCT........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................AAGGAGCCGCATCTGCAGCGCGAT.........	24	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................AATCCAAGGAGCCGCATCTGCAGCG.............	25	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................CCAAGGAGCCGCATCTGCAGC..............	21	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................ATG-G----CC----------CCAATATGTTTCCAG..................................................	21	1	1.00	1	0	0	0	0	1	0	0
.........GGCGGTGACTGTTATGCAGGA................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.....................................................................CAAATA-CCCTAAT---TT-CTT------------------GT..............................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................CCAAGGAGCCGCATCTGCAGCGCGAT.........	26	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................AGGAGCCGCATCTGCAGCGC............	20	1	1.00	1	0	1	0	0	0	0	0
................ACTGTTATGCAGGATCAAAGCTATCCGC..................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.........................CAGGATCAAAGCTATCCGCATACTGGCT.........................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0

dmo_1178

scaffold_6496:15863752-15863825 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads