ID:

dmo_1171

 Coordinate:

scaffold_6496:15395638-15395925 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-85.1 -85.0 -84.9

Flybase annnotation

CDS [Dmoj\GI20764-cds]; exon [dmoj_GLEANR_5593:2]; CDS [Dmoj\GI20764-cds]; exon [dmoj_GLEANR_5593:3]; intron [Dmoj\GI20764-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_1741:4484-4508 +
  2. scaffold_4049:4880-4904 +
  3. scaffold_6328:423997-424021 +
  4. scaffold_6328:1193228-1193252 +
  5. scaffold_6328:1800611-1800635 +
  6. scaffold_6354:45779-45803 +
  7. scaffold_6359:442534-442558 +
  8. scaffold_6473:3929881-3929905 +
  9. scaffold_6473:4555481-4555505 +
  10. scaffold_6473:7242377-7242401 +
  11. scaffold_6473:12789337-12789361 +
  12. scaffold_6496:25821876-25821900 +
  13. scaffold_6500:1742043-1742067 +
  14. scaffold_6500:3599731-3599755 +
  15. scaffold_6500:27039807-27039831 +
  16. scaffold_6540:914496-914520 +
  17. scaffold_6540:2730046-2730070 +
  18. scaffold_6540:9593191-9593215 +
  19. scaffold_6540:14997700-14997724 +
  20. scaffold_6680:9217204-9217228 +
  21. scaffold_6308:500044-500068 +
  22. scaffold_6308:2797482-2797506 +
  23. scaffold_6359:2962484-2962508 +
  24. scaffold_6473:1555041-1555065 +
  25. scaffold_6473:8880915-8880939 +
  26. scaffold_6473:13210976-13211000 +
  27. scaffold_6473:14857318-14857342 +
  28. dmo_1171  scaffold_6496:15395833-15395857 +
  29. scaffold_6496:19459112-19459136 +
  30. scaffold_6500:1738454-1738478 +
  31. scaffold_6500:4810068-4810092 +
  32. scaffold_6500:8393194-8393218 +
  33. scaffold_6500:12880894-12880918 +
  34. scaffold_6500:13975553-13975577 +
  35. scaffold_6540:1937571-1937595 +
  36. scaffold_6540:8054117-8054141 +
  37. scaffold_6540:14596245-14596269 +
  38. scaffold_6540:20682242-20682266 +
  39. scaffold_6540:26835537-26835561 +
  40. scaffold_6540:30957007-30957031 +
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGTGGGCCAACTGCTCAATGCCACCCACTGCGAGGGCGGCTTCTTGCAGGTGAGTAGTAACACGGCTGATTTATGGGCGCGCCAGTGCGGGCCATAGCCCATCCAATCAAATCTAATTTATAACTTTGTCGCTCGCCCAAATGATGACACATGTAGAGCCCACGTAATGCCAACGTACGGCCAATGCTTGACAGCTTTATGTGCAGCAGAGCTCGCCGAGTTGCAATCCAATTGCCGCTGTCTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGGGTGTGTGTGACGCCTGGCTGTCCCTTTGCTTATCTGTTGTCCTTGCTTGTCCTTGCAGATTGTTGATGGCAATGCCAAAACAGACGTCTCCAATCGCCGCGAGCCGGG
**************************************************(((((.(((((.(((((.(((....(((((.(((((.((((((....))))...........................(((((.((((((.(((...(((((((((..((.((((..((((..(((..((((.(((..(((.((((((...(((.(((...)))))).)))))))))....))))))).)))..))))...)))).))...)))))))))...))).))))))...)))))))))))))).))).......))).)))))..)))))....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 V049
head
.............................................AGCAGGTGAGTAGTAACATGGA................................................................................................................................................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0
....................................................................................................................................................CATATGTTGATCCCACGTA............................................................................................................................................................................................................................. 19 3 19 0.37 7 4 1 2 0
......................................................................................................................................................................................................................................................................................................................................................TTGATGGAAAAGGCAAAACAG......................... 21 3 6 0.17 1 0 1 0 0
...................................................................................................................................................................................................................................................................................................................................TGCTTGTCCTTCCAAATTATT............................................ 21 3 7 0.14 1 1 0 0 0
.....................................................................................................................................................................................................................................................CGTGTGTGTGTGTGTGTGTGTGTGT...................................................................................................................... 25 0 20 0.10 2 0 2 0 0
...........................................................................................................................................................................................................................................................................................................................................................................ACGTCTCCAATCGTGGCTA...... 19 3 16 0.06 1 1 0 0 0
..........................................................................................................................................................................................................................................................................GTGTGTGCGTGTGGGTGTGT...................................................................................................... 20 0 20 0.05 1 0 0 0 1
...................................................................................................................................................................................................................................................TGCGTGTGTGTGTGTGTGTGTGTGTGT...................................................................................................................... 27 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

TTCACCCGGTTGACGAGTTACGGTGGGTGACGCTCCCGCCGAAGAACGTCCACTCATCATTGTGCCGACTAAATACCCGCGCGGTCACGCCCGGTATCGGGTAGGTTAGTTTAGATTAAATATTGAAACAGCGAGCGGGTTTACTACTGTGTACATCTCGGGTGCATTACGGTTGCATGCCGGTTACGAACTGTCGAAATACACGTCGTCTCGAGCGGCTCAACGTTAGGTTAACGGCGACAGACGCACACACACACACACACACACACACACGCACACCCACACACACTGCGGACCGACAGGGAAACGAATAGACAACAGGAACGAACAGGAACGTCTAACAACTACCGTTACGGTTTTGTCTGCAGAGGTTAGCGGCGCTCGGCCC
**************************************************(((((.(((((.(((((.(((....(((((.(((((.((((((....))))...........................(((((.((((((.(((...(((((((((..((.((((..((((..(((..((((.(((..(((.((((((...(((.(((...)))))).)))))))))....))))))).)))..))))...)))).))...)))))))))...))).))))))...)))))))))))))).))).......))).)))))..)))))....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 V056
head
...................................................................................................................................................................................................................................................................................................................................ACGAACAGGAAGGTTTAATAA............................................ 21 3 7 1.71 12 3 9 0
.......GATTGACGAGTTTCGGTGGTTGA...................................................................................................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0
.........................................................................................................................ACTGAAACAGGGTGCGGGTT....................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:15395588-15395975 + dmo_1171 AAGTGGGCCAACTGCTCAATGCCA--CCCACTGCGAGGGCGGCTTCTTGCAGGTGAGTAG-T---------AACAC---------G----------------------------------------GCTGATTTATGGGCGCGCCAG-------------------TGCGGGCCATAG------------CC----------------------------------------CATCC---------AATC----AAATCTAATTTATAACTT---TGTC-GCT--CG-CCCAAATGATGACACATGTAGA-----GCCCACGTAATGCCAACGTA--------C-----G-GCCAATGCTTGACAGCTTTATGTGCAGCAGAGC----TCG-------CCG-AGTTGCAATCCAATTGCCGC--------------------------------------------------------------------------------------------------------------TGTCTGCGTGTGTGTGTGTGTGTGTGTGTGTGT------GCGTGTGGGTGTGTGTGACGCCTGG--CT--------------------GTCCCT----------------TTGCTTATCTGTTGT-CCTT--GC-TTGTCC----TTG------CAGATTGTTGATGGCAATGCCAAAACAGACGTCTCCAATCGCCGCGAGCCGGG
droVir3 scaffold_12875:11512116-11512507 - AAGTGGGCCAGCTGCTCAATGCCA--CCCACTGCGAAGGTGGCTACCTGCAGGTGAGTAC-TCGATTAAGCTCGCCGGAGGCCACAGTT--G------G-----------------------CGTTTC-----------------------------------------------------TGATTTATG----------------GCGC------------CGTGGC------------------AATC----AAATCTAATTTATAACAT------CGCCT--CG-CCTAAATGATGACATATGTGT--------CCACGTAATTCCCGCGTA--------T-----GCGCC---GGCTGACAGCTTTATGGGC--CAGGAC----TCG-------CATC-----CAATCCAATTCGCGCT-----AGCAATTTATGTGGCTCGCATAGTTTGCGGCGCCCGTTGTCCTTGCTTATCATTTGAT-------------------------------GTGACTTCG-------------------------------------------------------------------------TATGACATTATTGTTGCTGT-----------------TGTTGT--------T----GTTG---T--------TG----TTG------CAGATTGTTGATGGCAATGCCAAAACAGACGTATCCAATCGCCGGGAGCCAGG
droGri2 scaffold_15245:6714277-6714702 + AAGTGGGACAACTGCTCAATGCCA--CCCACTGCGATGGCGGCTATTTGCAGGTGAGTGT-------------------GACCATCGCACACAAATTGCAACCACAACGCCCCAAAAAGCGGCG--TC-----------------------------------------------------TGATTTAT---------------------------GGGCATCGTTGC------------------AATC----AAATCTAATTTATAACCT---T--TGCCT--CG-CCTAAATGATGACATATGCAG--------CCACGTAATTCATACGTCGCGTTGCGTGCACCGCATC---AGCTGACAGCTTTATGGGC-GCAGGGCAGCGTTGCAAGCGCCATC-----GAACACAATTCGCGCTCGCCTCGCAATTTATGTG----------------GCGACTGTTATCCTTGCTTATCATTTGAT-------------------------------TTGACTTTA-------------------------------------------------------------------------TGTGGCATTCATTTTACTGT-----------------TGCTAT--------T----GTTG---TTGTC-CATAT----TCG------CAGATTGTTGATGGCAATGCTAAAACAGACGTTTCCAATCGCCGGGAGCCGGG
droWil2 scf2_1100000004514:3271539-3271812 - AAGTGGGACAATTGCTGAATGCCA--CACACTGCGAGGGTGGCTATTTGCAGGTGGGTGGTTCGGTTTGGTTAGAT---GGCGGTTATGTGG------T---------------------------------------------------------------------------TG------------------------------------------------------------------------------AAAACTAATTTATTACTCCATA--TGTGTGGAA-GTTAAATGATGACTTATGTG------------------------------------------------------ACACTTTTATGGTT--------------------------------------------------------------------------------------------------------------------------------------------------TTGG--------------------------------------------------CCTGTGCGAA---------TTCAGGCAGTATT--------------TGATTCTCTTCCATCTCAAC--------T----TCTG---TTTTTCCTGTT----CCA------CAGATTGTTGATGGCAATGCCAAGACGGATGTGTCCAATCGTCGGGAGCCAGG
dp5 3:15456508-15456668 - AAGTGGGTCAACTGCTGAATGCGA--CCCACTGCGAGGGCGGATATTTACAGGTGGGTGT-------------------GGCCACCGTTCAG------C---------------------------------------------------------------------------CAACATTTGATTTATC----------------ATGCCCCACTGGCAATCGTGGCAATCCGGAC---------AATC----CGTCCTAATTTATGCCCT-------------TG-GCTAAACGATGACATATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_323:2086-2254 - AAGTGGGTCAACTGCTGAATGCGA--CCCACTGCGAGGGCGGATATTTACAGGTGGGTGT-------------------GGCCACCGTTCAG------C---------------------------------------------------------------------------CAACATTTGATTTATC----------------ATGCCCCACTGGCAATCGTGGCAATCCGGACAATCCGGC-AATC----CGTCCTAATTTATGCCCT-------------TG-GCTAAACGATGACATATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:11267094-11267221 - AAGTGGGTCAACTGCTGAACGCGA--CCCACTGCGAGGGCGGCTACTTGCAGGTGGGTGC-------------------GGCTTGTG----T------G---------------------------------------------------------------------------TGTGTGTT-ATTTATCTC----------------------------------------CGGCC---------GGTC----AGAGCTAATTTATAT-----------------G-ACTAAGCGATGACATATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396547:1200468-1200586 + AAGTGGGTCAACTGCTGAACGCGA--CCCACTGCGATGGCGGCTACTTGCAGGTGGGTGT-------------------GGCTG-----------------------------------------------------------------------------------------------TGAGATTTATCTC----------------------------------------CGCCC---------GGTC----GGAGCTAATTTATAT-----------------G-ACTAAGCGATGACATATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302685:836904-837029 - TGGCTGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGT------GTGTGTGTGTGTGTG---------TTCAC--------------CCGTTTTTTTAC----------------CCTCA--CTTCT----CCCTTCCCT-T--AT----TTTGTTATGCAAAC-TTTACTGGCATTTTCCAAACTAATG----------------------
droFic1 scf7180000453858:319354-319503 - AAGTGGGTCAGCTGCTAAACGCCA--CCCACTGCGACGGCGGCTATCTGCAGGTGGGTGT-------------------GGCCCGTG----G------C---------------------------------------------------------------------------CGAGTCTTGATTTATATCC----------------------------------------TCCG-------CATGTC----GGGGCTAATTTATATCGC-------------CGTGCAAAGCGATGACATATGCGAC-----ACACACGCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491211:283899-284184 - AAGTGGGTCAGCTGCTGAATGCCA--CCCACTGCGAGGGCGGTTATTTGCAGGTGGGTGT-------------------GGCCACTT----G------CCAC------------------------------------------------------------------------CAGCTCTTGATTTATCTCC----------------------------------------GCCC-------CATGTC----GCAGCTAATTTATATCGC-------------CG-GCTAAGCGATGACATATGCCACACAAGACACACACAAGACACACACA--------A-----G-ACACACACACGACACACACA-------CACACA----TCG-------C-------------------------------------------------------------------------------CAACTGAA-------------------------------TTGAGTTTG---------------------------------------------------------------------------------------------------------------------------CCTG---------CTCTC-CATTG----TTG------CAGATTGTTGATGGCAACGCCAAGACGGATGTCTCCAATCGCAGGGAGCCCGG
droRho1 scf7180000777059:37634-37786 + AAGTGGGTCAGCTGCTCAATGCCA--CCCACTGCGAGGGCGGCTATTTGCAGGTGGGTGT-------------------GGCCAGTG----G------C---------------------------------------------------------------------------CAGCTGTTGATTTATCTCCCTCCCCCCA--------------------------------CTT-------CATGTT----GAAGCTAATTTATATCGC-------------CG-AATAAGCGATGACATATGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACAC-----------------------
droBia1 scf7180000301141:1155-1261 + TGTGTG-TGTGTGTGTGTGTGTGT--GTGTGTGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGCGTGT--GTGTGT----GTG-----TGTGTGC--------------GTGTTTGTGTGC----------------GTGTG--TGTGT----GCGT--GT-GTGTGT----GTG------GCTACTGCTGATG----------------------------------------
droTak1 scf7180000415243:10217-10355 - AAGTGGGTCAGCTGCTGAACGCAA--CCCACTGCGACGGCGGCTATTTGCAGGTGGGTGT-------------------GGCCACTG----G------C---------------------------------------------------------------------------CGTCTCTTGATTTATTCCC----------------------------------------TACT-------CATGTCAGGGGGGGCTAATTTATATCGC-------------CC-GCTAAGCGATGACATATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409209:288793-289143 - AACTGACTTAAAAACTGAATGACAAACCGACTGA-AAGACGGCTTTTAGGATGTGCGTGC-T---------ATCCT---------G----------------------------------------GTGACGTTCTACGAGCGACTGAAATGTGCCAATGGTGCCACAAGAGGCACAGCATCACCACATCACCAACCATCCTCATCATTGTCC-------------------------------------------------------------------GCT--GG-AGTCGCTGATGACAGGGACAG------GCAAACGTCAAACCAAGGCG--------G-----A-AATAGTGCCTGTAAG-----TAGGCAGCACAAC----ACG-------CCA---------------------------------------------------------CTCAAGCGGTCCAGTGG--TTGTC---------------------GGCCGTCTATTTATACAGCTCCATATATCTCACTGTGTGTGTGTGTGTGTGAGTGT------------GGGTGTGAGTGTGTGTGCCAGCTGT--CT--------------------GTCGCT----------------------------------------------------------------TTGTT--------------------------------------------
dm3 chrX:6177350-6177481 - GTTTGG--CAAGTGCTTCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTTCAT----------------------------AGTTGCATTGAAAATGGCAA----------------------------------------------------------------AGCAGCAAACGAAAAACGG-----T-------ACTTTCCATGCTTCTATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------GCGTGTGTGTGTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------G
droSim2 3l:11316612-11316717 + TTTTCA----TCTGTT---------------------------TTTGTGCAAGTGTGTGT-------------------GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGT--ATTTGTGTGC----GC------TGTGTTC--------------GCTGTTGCTCAC----------CACTGT--------T----TTCG---TTGCCTTAAAC----TCT------GCGATTATTAATG----------------------------------------
droSec2 scaffold_21:351712-351821 - TTTTTGCTGTGTGCGTGAGTGTGT--GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT-------------------GTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------GTGTGTGTGTGT----------------GTGTG--TAGGC----TACA--CT-TTGT--------G------CTGATCTTTGCAG----------------------------------------
droYak3 3L:7253274-7253400 - ATGCAGCTCCATCTGTAAGTGTGT--GTGTGTGTGTGTGTGTGTGTGTGTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--GTGTGT----GTG-----TGTGTGT--------------GTGTGTGTGTGT----------------GTGGG--TGTGT----TGTC--TT-TTGTGTGTAATTA------AACAGTGCTGTTGGCA-------------------------------------
droEre2 scaffold_4784:14835258-14835362 - CACTGTCTACGT----------GT--------GCGTGTGTGTGTGTTTGTGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----GTGT--GTTTGT----GTG-----TGTGTGT--------------GTGGTTGTGTAC----------------TTGTA--TTTGT----CATC--GT-CTGTGT----TT-----------TTGTTGTTG----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AAGTGGGCCAACTGCTCAATGCCA--CCCACTGCGAGGGCGGCTTCTTGCAGGTGAGTAG-T---------AACAC---------G----------------------------------------GCTGATTTATGGGCGCGCCAG-------------------TGCGGGCCATAG------------CC----------------------------------------CATCC---------AATC----AAATCTAATTTATAACTT---TGTC-GCT--CG-CCCAAATGATGACACATGTAGA-----GCCCACGTAATGCCAACGTA--------C-----G-GCCAATGCTTGACAGCTTTATGTGCAGCAGAGC----TCG-------CCG-AGTTGCAATCCAATTGCCGC--------------------------------------------------------------------------------------------------------------TGTCTGCGTGTGTGTGTGTGTGTGTGTGTGTGT------GCGTGTGGGTGTGTGTGACGCCTGG--CT--------------------GTCCCT----------------TTGCTTATCTGTTGT-CCTT--GC-TTGTCC----TTG------CAGATTGTTGATGGCAATGCCAAAACAGACGTCTCCAATCGCCGCGAGCCGGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTGTGTGTGTGTGTGTGTGTGT................................................................................................................................................................................25200.102000002
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT------GCGTGTGGGTGTGT..........................................................................................................................................................20200.051001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGTGTGTGTGTGTGTGTGTGTGT................................................................................................................................................................................27200.051000001
droVir3
AAGTGGGCCAGCTGCTCAATGCCA--CCCACTGCGAAGGTGGCTACCTGCAGGTGAGTAC-TCGATTAAGCTCGCCGGAGGCCACAGTT--G------G-----------------------CGTTTC-----------------------------------------------------TGATTTATG----------------GCGC------------CGTGGC------------------AATC----AAATCTAATTTATAACAT------CGCCT--CG-CCTAAATGATGACATATGTGT--------CCACGTAATTCCCGCGTA--------T-----GCGCC---GGCTGACAGCTTTATGGGC--CAGGAC----TCG-------CATC-----CAATCCAATTCGCGCT-----AGCAATTTATGTGGCTCGCATAGTTTGCGGCGCCCGTTGTCCTTGCTTATCATTTGAT-------------------------------GTGACTTCG-------------------------------------------------------------------------TATGACATTATTGTTGCTGT-----------------TGTTGT--------T----GTTG---T--------TG----TTG------CAGATTGTTGATGGCAATGCCAAAACAGACGTATCCAATCGCCGGGAGCCAGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------T----GTTG---T--------TG----TTG------CAGA.................................................18120.081100000000000000000000000000000000000000000000000000000000000000
droGri2
AAGTGGGACAACTGCTCAATGCCA--CCCACTGCGATGGCGGCTATTTGCAGGTGAGTGT-------------------GACCATCGCACACAAATTGCAACCACAACGCCCCAAAAAGCGGCG--TC-----------------------------------------------------TGATTTAT---------------------------GGGCATCGTTGC------------------AATC----AAATCTAATTTATAACCT---T--TGCCT--CG-CCTAAATGATGACATATGCAG--------CCACGTAATTCATACGTCGCGTTGCGTGCACCGCATC---AGCTGACAGCTTTATGGGC-GCAGGGCAGCGTTGCAAGCGCCATC-----GAACACAATTCGCGCTCGCCTCGCAATTTATGTG----------------GCGACTGTTATCCTTGCTTATCATTTGAT-------------------------------TTGACTTTA-------------------------------------------------------------------------TGTGGCATTCATTTTACTGT-----------------TGCTAT--------T----GTTG---TTGTC-CATAT----TCG------CAGATTGTTGATGGCAATGCTAAAACAGACGTTTCCAATCGCCGGGAGCCGGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAGTGGGACAATTGCTGAATGCCA--CACACTGCGAGGGTGGCTATTTGCAGGTGGGTGGTTCGGTTTGGTTAGAT---GGCGGTTATGTGG------T---------------------------------------------------------------------------TG------------------------------------------------------------------------------AAAACTAATTTATTACTCCATA--TGTGTGGAA-GTTAAATGATGACTTATGTG------------------------------------------------------ACACTTTTATGGTT--------------------------------------------------------------------------------------------------------------------------------------------------TTGG--------------------------------------------------CCTGTGCGAA---------TTCAGGCAGTATT--------------TGATTCTCTTCCATCTCAAC--------T----TCTG---TTTTTCCTGTT----CCA------CAGATTGTTGATGGCAATGCCAAGACGGATGTGTCCAATCGTCGGGAGCCAGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................GCGAGGGTGGCTATTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
dp5
AAGTGGGTCAACTGCTGAATGCGA--CCCACTGCGAGGGCGGATATTTACAGGTGGGTGT-------------------GGCCACCGTTCAG------C---------------------------------------------------------------------------CAACATTTGATTTATC----------------ATGCCCCACTGGCAATCGTGGCAATCCGGAC---------AATC----CGTCCTAATTTATGCCCT-------------TG-GCTAAACGATGACATATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAGTGGGTCAACTGCTGAATGCGA--CCCACTGCGAGGGCGGATATTTACAGGTGGGTGT-------------------GGCCACCGTTCAG------C---------------------------------------------------------------------------CAACATTTGATTTATC----------------ATGCCCCACTGGCAATCGTGGCAATCCGGACAATCCGGC-AATC----CGTCCTAATTTATGCCCT-------------TG-GCTAAACGATGACATATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AAGTGGGTCAACTGCTGAACGCGA--CCCACTGCGAGGGCGGCTACTTGCAGGTGGGTGC-------------------GGCTTGTG----T------G---------------------------------------------------------------------------TGTGTGTT-ATTTATCTC----------------------------------------CGGCC---------GGTC----AGAGCTAATTTATAT-----------------G-ACTAAGCGATGACATATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAGTGGGTCAACTGCTGAACGCGA--CCCACTGCGATGGCGGCTACTTGCAGGTGGGTGT-------------------GGCTG-----------------------------------------------------------------------------------------------TGAGATTTATCTC----------------------------------------CGCCC---------GGTC----GGAGCTAATTTATAT-----------------G-ACTAAGCGATGACATATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGGCTGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGT------GTGTGTGTGTGTGTG---------TTCAC--------------CCGTTTTTTTAC----------------CCTCA--CTTCT----CCCTTCCCT-T--AT----TTTGTTATGCAAAC-TTTACTGGCATTTTCCAAACTAATG----------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAGTGGGTCAGCTGCTAAACGCCA--CCCACTGCGACGGCGGCTATCTGCAGGTGGGTGT-------------------GGCCCGTG----G------C---------------------------------------------------------------------------CGAGTCTTGATTTATATCC----------------------------------------TCCG-------CATGTC----GGGGCTAATTTATATCGC-------------CGTGCAAAGCGATGACATATGCGAC-----ACACACGCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAGTGGGTCAGCTGCTGAATGCCA--CCCACTGCGAGGGCGGTTATTTGCAGGTGGGTGT-------------------GGCCACTT----G------CCAC------------------------------------------------------------------------CAGCTCTTGATTTATCTCC----------------------------------------GCCC-------CATGTC----GCAGCTAATTTATATCGC-------------CG-GCTAAGCGATGACATATGCCACACAAGACACACACAAGACACACACA--------A-----G-ACACACACACGACACACACA-------CACACA----TCG-------C-------------------------------------------------------------------------------CAACTGAA-------------------------------TTGAGTTTG---------------------------------------------------------------------------------------------------------------------------CCTG---------CTCTC-CATTG----TTG------CAGATTGTTGATGGCAACGCCAAGACGGATGTCTCCAATCGCAGGGAGCCCGGSizeHit CountTotal NormTotal
No Reads
droRho1
AAGTGGGTCAGCTGCTCAATGCCA--CCCACTGCGAGGGCGGCTATTTGCAGGTGGGTGT-------------------GGCCAGTG----G------C---------------------------------------------------------------------------CAGCTGTTGATTTATCTCCCTCCCCCCA--------------------------------CTT-------CATGTT----GAAGCTAATTTATATCGC-------------CG-AATAAGCGATGACATATGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACAC-----------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGTGTG-TGTGTGTGTGTGTGTGT--GTGTGTGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGCGTGT--GTGTGT----GTG-----TGTGTGC--------------GTGTTTGTGTGC----------------GTGTG--TGTGT----GCGT--GT-GTGTGT----GTG------GCTACTGCTGATG----------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAGTGGGTCAGCTGCTGAACGCAA--CCCACTGCGACGGCGGCTATTTGCAGGTGGGTGT-------------------GGCCACTG----G------C---------------------------------------------------------------------------CGTCTCTTGATTTATTCCC----------------------------------------TACT-------CATGTCAGGGGGGGCTAATTTATATCGC-------------CC-GCTAAGCGATGACATATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AACTGACTTAAAAACTGAATGACAAACCGACTGA-AAGACGGCTTTTAGGATGTGCGTGC-T---------ATCCT---------G----------------------------------------GTGACGTTCTACGAGCGACTGAAATGTGCCAATGGTGCCACAAGAGGCACAGCATCACCACATCACCAACCATCCTCATCATTGTCC-------------------------------------------------------------------GCT--GG-AGTCGCTGATGACAGGGACAG------GCAAACGTCAAACCAAGGCG--------G-----A-AATAGTGCCTGTAAG-----TAGGCAGCACAAC----ACG-------CCA---------------------------------------------------------CTCAAGCGGTCCAGTGG--TTGTC---------------------GGCCGTCTATTTATACAGCTCCATATATCTCACTGTGTGTGTGTGTGTGTGAGTGT------------GGGTGTGAGTGTGTGTGCCAGCTGT--CT--------------------GTCGCT----------------------------------------------------------------TTGTT--------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GTTTGG--CAAGTGCTTCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTTCAT----------------------------AGTTGCATTGAAAATGGCAA----------------------------------------------------------------AGCAGCAAACGAAAAACGG-----T-------ACTTTCCATGCTTCTATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------GCGTGTGTGTGTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGTGTG...................................................................................................................................................................................23202.855700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005700000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAATGGCAA----------------------------------------------------------------AGCAGCAAA....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTTCTATCTGTGTGTGTGTG...............................................................................................................................................................................................2411.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-----T-------ACTTTCCATGCTTCTATC...........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTCTATCTGTGTGTGTG.................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAATGGCAA----------------------------------------------------------------AGCAGC.......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT------GCGTGTGTGTGTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------G2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGTGTGT..................................................................................................................................................................................24200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGTGTGT------G.......................................................................................................................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT------GCGTGTGTGTGTGTA.........................................................................................................................................................20140.1420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT------GCGTGTGTGTGTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------G2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGTGTG...............................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGT------GCGTGTGTGTGTG...........................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGTGTG...................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT------GCGTGTGTGTGTGTA.........................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGTGTGTG...............................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATCTGTGTGTGTGT................................................................................................................................................................................................17150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GCGTGTGTGTGTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------G18160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTGTGTGTGTGTG.............................................................................................................................................................................................18200.0510000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGT------GC......................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGT------GCGT....................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGTGTGTGTGTGTGTGT........................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT------GCGTGTGTGTGTG...........................................................................................................................................................19200.0510000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGT------GCGTGTGTG...............................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGT------GCGTGTGTGTGTGT..........................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGT------GCGTGTGTGTGTG...........................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGT------GCGTGTG.................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGT------GCGTGTGTGTGT............................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGT------GCGTGT..................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGTGTGT....................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGT------GCGTGTGTGTGTG...........................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGT------GCGTGT..................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGT------GCG.....................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGT------GCGTGTGTGTGT............................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGT------GCGTGTGTGTGTG...........................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGTGTGTGTGTGTGTGTGT......................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGT------GCGTGTGTG...............................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGT------GCGTGTGTG...............................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGT------GCGTGTGTGTGT............................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droSim2
TTTTCA----TCTGTT---------------------------TTTGTGCAAGTGTGTGT-------------------GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGT--ATTTGTGTGC----GC------TGTGTTC--------------GCTGTTGCTCAC----------CACTGT--------T----TTCG---TTGCCTTAAAC----TCT------GCGATTATTAATG----------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................TTGTGCAAGTGTGTGT-------------------GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTC--------------GCTGTTGA.....................................................................................................................15140.07100000000001000000
droSec2
TTTTTGCTGTGTGCGTGAGTGTGT--GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT-------------------GTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------GTGTGTGTGTGT----------------GTGTG--TAGGC----TACA--CT-TTGT--------G------CTGATCTTTGCAG----------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................AGTGTGT--GTGTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530003
..........................GTGTGTGTGTGTGTGTGTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020200
...............TGAGTGTGT--GTGTGTGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.0710100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------GTGTGTGTGTGT----------------GTGTG--TAG.......................................................................................21200.0510001
..................................GTGTGTGTGTGTGTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
droYak3
ATGCAGCTCCATCTGTAAGTGTGT--GTGTGTGTGTGTGTGTGTGTGTGTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--GTGTGT----GTG-----TGTGTGT--------------GTGTGTGTGTGT----------------GTGGG--TGTGT----TGTC--TT-TTGTGTGTAATTA------AACAGTGCTGTTGGCA-------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CACTGTCTACGT----------GT--------GCGTGTGTGTGTGTTTGTGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----GTGT--GTTTGT----GTG-----TGTGTGT--------------GTGGTTGTGTAC----------------TTGTA--TTTGT----CATC--GT-CTGTGT----TT-----------TTGTTGTTG----------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................GT--------GCGTGTGTGTGTGTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.2941010020
...........T----------GT--------GCGTGTGTGTGTGTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.1720000200
......................GT--------GCGTGTGTGTGTGTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410010000
.......................T--------GCGTGTGTGTGTGTTTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310000100
......................GT--------GCGTGTGTGTGTGTTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.1010000010
.......................T--------GCGTGTGTGTGTGTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000020
.......................................................TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----GTGT--GTTTGT----GTG-----TGT...............................................................................................................................................19200.0510000010
......................GT--------GCGTGTGTGTGTGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000010

Generated: 05/17/2015 at 11:53 PM