dmo_1168

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	+
Gypsy-22_DWil-I-int	LTR	Gypsy	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCTAAATATACAAAAAGTCTATCCTAGTCGCTCGCTTAAGGCAACCAATGGTATGTAAAGGATATATATATATATATGTATATGTGTACATGAGTGTATGTATGTGTGTGTGTGTGCTTCGGTGTATGCGTGTTTATTTTTGGGTGTGTGGGTCGGTTCTACTGTCAAAGCAAACTCACTCCACGCGCCGTGTTAATAATTATGTTTCTGATTATTATTATTATTATTATTATTATTATAATTATTGTTAT ************************************************************************************************************************....................(((((((((((.((((...((.....))..)))).)).))))))))).........***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V056 head	V110 male body	V049 head
..........................................................................................................................TGTATGCGTGTTTATTTTTGG............................................................................................................	21	0	1	1.00	1	1	0	0	0
............................................................................................................................................................................AACTCACTCCACGCGCCGTGTTAATA.....................................................	26	0	1	1.00	1	0	1	0	0
.......................................................................................................GTGTGTGTGTGTGCTTCGGTGTATGCGT........................................................................................................................	28	0	1	1.00	1	1	0	0	0
.............................................................................................................................................GGGTGTGTGGGTCGGTTCT...........................................................................................	19	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................GGTTCTACTGTCAAAGCAAA.............................................................................	20	0	1	1.00	1	1	0	0	0
.............................................................................................................GTGTGTGCTTCGGTGTATGCGTG.......................................................................................................................	23	0	1	1.00	1	0	0	1	0
............................................................................................................................................TGGGTGTGTGGCTCGCTCCTA..........................................................................................	21	3	2	0.50	1	0	0	0	1
...................................................................................................................................................................................................ACAATTCTGTTTCTGATT......................................	18	2	20	0.45	9	9	0	0	0
............................................................................................................................................TGGGTGTGTGGCTCGCTCCT...........................................................................................	20	3	19	0.05	1	0	0	0	1

AGATTTATATGTTTTTCAGATAGGATCAGCGAGCGAATTCCGTTGGTTACCATACATTTCCTATATATATATATATACATATACACATGTACTCACATACATACACACACACACACGAAGCCACATACGCACAAATAAAAACCCACACACCCAGCCAAGATGACAGTTTCGTTTGAGTGAGGTGCGCGGCACAATTATTAATACAAAGACTAATAATAATAATAATAATAATAATAATATTAATAACAATA ***************************************************....................(((((((((((.((((...((.....))..)))).)).))))))))).........************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	V056 head
........................................................................................................................................................................TCGTTTGAGTGAGGTGCG.................................................................	18	0	1	1.00	1	1	0
.................................................................................................................................................................................TGAGGTGGTCGGCACAAGT.......................................................	19	3	16	0.06	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:15226453-15226703 +	dmo_1168	TCTAAATATACAAAAAGTCTATCCTAGTCGCTCGCTTAAGGCAACCAATGGTATGTAAAGGATATAT---------ATATATATA-TGTAT--------A------TGTGTA----CATGAGTGTATGT--A------TGTGTG-TGTGTG----------------TGCTT--CGGTGTATG-------------------------------CGTGTTTA---TT-----------------T---------------------TTGGGTG--------TGTGG----------------------------------------------------------------------------------------------------------------GTCGGTTCTACTG------TC-----------------------AAAGCAAACTCACTC-CACGCGCCGT---------------------------GT------------------------------------------------------------TAATAATT-------------------------ATGTTTCT--GATTATT-ATTATTATTATTATTATTATTA----TAATTATTGTT------AT
droVir3	scaffold_12875:11641975-11642239 -	dvi_6156	TCTAAATATACAAAAAATCTATCCTAGTCGCACGCTTAAGGCAACCAATGGTATGTAAAGGATGTAT---------GCATA-----AGTATGTGAGTATG------TCTGTA----AACGTGTGTATGTGTA------T--GTGT---------CTGTGTT------TGCGTATG--CGTATGT---------------------------------------------------------------------------------------------------------------------------------------------ATGTG---------------------------------------------------TAGGTGTAGGTGTGTGGATCGATTCAACTG------TT-----------------------AAAGCAAAC------TCACGCGCCGT---------------------------GTTTACG--------------------------------------------AATTACATA--------TT-------------------------ATGATTAT--GTTTATTAAATATTATTAAAGTTATTATTACATAATTTTATTGTT------AC
droGri2	scaffold_15245:6585062-6585300 +		TCTAAATATACAAAAAATCTATCCTAGTCGCACGCTTAAGGCAACCAATGGTATGTAAAGGATATAA---------ATATGCATA-AGTGC--------G------TGTGTG----TGTGGGTGTGTGT--G------TGTGC---------GT--------ATGTGTGTGT--G-------------------------------GTTGTGTATGTGTTTT---TTTTA----------------------------------------ATG--------GGTGT----------------------------------------------------------------------------------------------------GTG--------GGCAAATTCTACTGCG---------------------------------------------------CCTT---------------------------GT----------------------------------------------------------------TATTNNNNNNNNNNNNNNNNNNNNNNNNNATAA--------------AATCTTATTATTATTATTATTA----TT---ATTGTT------AT
droWil2	scf2_1100000004513:4908768-4908973 +	dwi_906	TTTAAACATACAAAAAGTTTATCCTAGTCGCACGCTTAAGGCATCCAATGGTATGTAGTA-------G---TGTATATGTG---------T------GTGTGTGTGTGTGTA----TACG------TGT--GGGTGTGCGTGTT-TG--------------------TGTGT--GCGTGTGTA---------------------------TGTGTATGTG------CTTAAGTGTACA--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------ATAATTAAAAATATATT-ATTTTTATTATTATTATTATTA----TTAATATTATTATACCGAT
dp5	3:19363819-19364007 +		TCTTAATATACAAAAAATCTATCCTAGTCGAACGTTTAAGGCGAGCAACGGTATGTAGTC-------G---TCTGTGAGCG----T-----------GTGAG--------------------TGTGTGT--G---------------------G------------------------------------------GTGT--GTCTGTTCTGTGAGTGCTTT--AAAT----------------------------------------------------ACATGTGTATAGTATATGGAGATACACAACCACATACACATATGTATATG---------------------------------------------------TTTATGTAA------------------CTGCGTTTATTCTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droPer2	scaffold_37:363671-363859 +		TCTTAATATACAAAAAATCTATCCTAGTCGAACGTTTAAGGCGAGCAACGGTATGTAGTC-------G---TCTGTGAGCG----T-----------GTGAG--------------------TGTGTGT--G---------------------G------------------------------------------GTGT--GTCTGTTCTGTGAGTGCTTT--AAAT----------------------------------------------------ACATGTGTATAGTATATAGAGATACACAACCACATACACATATGTATATG---------------------------------------------------TTTATGTAA------------------CTGCGTTTATTCTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droAna3	scaffold_13417:704981-705100 +		TATATA---------------------------------------------------AACAATATAT---------ATATATACA-TATAT--------A------CATATATACATATTTATGTATAT--G------T--GT---GGGTG----TAGAGG------TGTGTAGG--TGTGCAG------------GTGT--AC-GGTTGTGTGTGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTCGTTGCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT
droBip1	scf7180000396547:1103934-1104195 +		CCTAAACATACAAAAGGTGTATCCTAGTCGCACGTTTAAGGCCACCAACGGTATGTAGTC-------GTCGAGTGT-----------------------------------------------G---------------------------------------------------------------------------------TGTTTTGTAAGTGTCTT--GGAACTGAACCATGCACTCATCCCCTCTCGTGGATGCATCTCGTAGGTG--------CATATGTAACACACA----------------------------------------------------------------------------------------------------------------TTG------TA-----------------------CACACACAC------ACACACACC-CA--TGGAATGTTGTTATATAAGTATTTGTTTAAG--------------------------------------------AAGCACACGCTCTGGCATT-------------------------TTAGTTTCA-AA-------------CTGCGAACAATACAA----CG---ACTCTT------AT
droKik1	scf7180000302544:986193-986376 -		ATAT-ATAT---------------------------------------------------------------------ATATATA-TATAT--------A------TATGCACATATATA--CATACAT--A------GGTGT---GCCTGTGGGG----GTATAT-AATAT--GCTAACATT-----------------------------TGACTTTTTTCTCATTTCGAAAG--------------------------------------AGGCTTATTTACAAAAGGCCGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGAAATT-------------------------CGACTTGTAGAATTACT-AATATTACCATTACCACTATTA----TTACTATTATTA-------
droFic1	scf7180000453858:431802-432013 -		TCTAAATATACAAAAAGTCTATCCTAGTCGCACGTTTAAGGCCACCAACGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------ATGT--GTTTGTTCTGTGAGTGTTTT--AAATTTAGTACATA--AACAT---------------------TTAGAAG--------CATAT----------------------------------------------------------------------------------------------------GTAA------------------CTGCGAGTATTGTTATATACA--CACCACACA-----------CTACACACACACAC---ATTTGGAATGCTGTTATATAATTAATTGTTT-------------------------------------------------------------------------------------------------C----------------------------------------------TTA-------
droEle1	scf7180000491211:419111-419326 -		TCTAAGCATACACAAAGTGTATCCTAGTCGCACGTTTAAGGCCACCAACGGTATGTAGTG-------C---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------GTGTGTGTTTGTTCTGTGAGTGTTTTTTGAACTTAGTACATA--CTGAT---------------------TTAGAAG--------CATAT----------------------------------------------------------------------------------------------------GTAA------------------CTGCGATTATTGTTATATGCACACAC--AACA-----------CCACAC-CACACACCACA--TGGAATGCTGTTATATAAGTAATTGTTT-------------------------------------------------------------------------------------------------C----------------------------------------------TTA-------
droRho1	scf7180000777951:8311-8508 +		TCTAAATATACATAAAGTGTATCCTAGTCGCACGTTTAAGGCCACCAACGGTATGTAGTC-------G---AATGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------GTGT--GTTTGTTCTGTGAGTGTTTT--AAATTTAGTACATA--CAAAT---------------------TTAGAAG--------CATAT----------------------------------------------------------------------------------------------------GTAA------------------CTGCGATTATTGTTATATGCACACAC------------------------CACACAC---A--TGGAATGCTGTTATATAATTAATTGTTT-------------------------------------------------------------------------------------------------C-----------------------------------------------TA-------
droBia1	scf7180000301232:32815-33008 -		TATGTATATGTATAT-GTATATGT-ATATGTATGTGTATA----------------------------------------------------------------------------TG----TATGTGTATA------T--GTAT---------ATG----TATA--TGTAT--GTGTATATGTATGTGTATATGTATAT--GTATGTG-----TATGT-----------------------------------------------GTATATGTATATGTATATGTATATCGTATATGTATATGTATATGTATATGTATAT-----------------------------------------------------------------GTAT------------------ATGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTATATGTA----TATGTATATGT------AT
droTak1	scf7180000415711:1669471-1669653 +		CGACC-----------------------------------------ATTAATCCCCAATATATGTAT---------ATATATATA-TGTAT--------A------TGTATA----TGTATGTATATGT--A------TATATG-TATAT--------------------------------------------------------------------------------------------------------------------ATATATA--------TGT-C---GCCTCTACGAATTTC--------------------------GTTGGCCGTCTCCATGATTAGTTAGACTTATGTTTAGTGTTTATTGGTGTGATTATATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTATTATTTTTA----TA---ATTTTT------GT
droEug1	scf7180000409672:7869823-7869991 -		TCTAAATATACAAAAAGTCTATCCTAGTCGCACGTTTAAGGCCACCAACGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------ATGT--GTTTGTTCTGTGAGTTCTTTTCAAATTTAGTGCATA--GGCAA---------------------TTAGAAG--------CATAT----------------------------------------------------------------------------------------------------GTAA------------------CTTGAATTATTGTTATAT-CACACAC-----------------------TCACACACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chrX:4949480-4949720 +		TAGTCAGTCA---CAAGTCAACCCT------------------------GACCTGAAAAGAGT-TATG---T----ATC-------TGTATATATGTATA------TCTCTA----CATATGTGTGTGTGTG------T--GTGT---------GCG----TATCA-TGCAT--GCCTGCATGTCTGTTTGTATGCAGAT--GTTTGTTTTGTATG---------------------------------------------------------CAACTTTTTGTCGAGATGCCATAT-----------------------------------------------------------------------------------------GCGA------------------ATGCAT------------------------CTTTATCGCACCCACACTA-TCGGTCTCGA---------------------------GT------------------------------------------------------------GGGTAGTA-------------------------ATAATACGAATTA----------------------AATTG----TACCTGTTGTT-------T
droSim2	2r:18533392-18533551 -		TCTAAATATACAAAAAGTCTATCCTAGTCGCACGTTTAAGGCCACCAATGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------GTGT--GTTTGTTTTGTGAGTGTTTT---ATTTAAGTACATA--AACAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTAA------------------CTGCGATTATTGTTATATACAGACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AC
droSec2	scaffold_9:1306396-1306555 -		TCTAAATATACAAAAAGTCTATCCTAGTCGCACGTTTAAGGCCACCAATGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GG------------------------------------------GTGT--GTTTGTTTTGTGAGTGTTTT---ATTTAAGTACATA--AACAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTAT------------------CTGCGATTATTGTTATATACAGACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AC
droYak3	2R:11182046-11182207 +		TTTAAATATACAAAAAGTCTATCCTAGTCGCACGTTTAAGGCCACCAATGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------GTGT--GTTTGTTTTGTGAATGTTTA---ATTTAAGTACATA--AACAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTAA------------------CTGCGATTATTGTTATATACACACA-----------------------------CAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AC
droEre2	scaffold_4820:6400137-6400345 -		GTA--------------------------------------------------TGTATGT-------A---TGTATGTATG---------T------ATGTA------TGTA--TGTATG--TATGTATGTA------T--GTAT---GT--ATGT----A------TGTAT--GTATGTATGT---------------------------ATGTATGTA------------------------T---------------------------------------------------------------------------------------------------------------------------------------------GTATGTATGTATGTC--------------T-----------------------------------------------------------------------------------TCCAATTCAGAGTCGCAAAATATTTCAAGTAATCTCTCTTATCGGTCGAG-------CACTGAGTG-------------------------TAGTGTATGTGTTCTTA-AGTGTGATTATTTGCAAGATCA----CAATTACTG--------AT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TCTAAATATACAAAAAGTCTATCCTAGTCGCTCGCTTAAGGCAACCAATGGTATGTAAAGGATATAT---------ATATATATA-TGTAT--------A------TGTGTA----CATGAGTGTATGT--A------TGTGTG-TGTGTG----------------TGCTT--CGGTGTATG-------------------------------CGTGTTTA---TT-----------------T---------------------TTGGGTG--------TGTGG----------------------------------------------------------------------------------------------------------------GTCGGTTCTACTG------TC-----------------------AAAGCAAACTCACTC-CACGCGCCGT---------------------------GT------------------------------------------------------------TAATAATT-------------------------ATGTTTCT--GATTATT-ATTATTATTATTATTATTATTA----TAATTATTGTT------AT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................TGTATG-------------------------------CGTGTTTA---TT-----------------T---------------------TTGG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCACTC-CACGCGCCGT---------------------------GT------------------------------------------------------------TAATA...........................................................................................	26	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................................GTGTG-TGTGTG----------------TGCTT--CGGTGTATG-------------------------------CGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................GGGTG--------TGTGG----------------------------------------------------------------------------------------------------------------GTCGGTTCT......................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTACTG------TC-----------------------AAAGCAAA...........................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................GTGTG----------------TGCTT--CGGTGTATG-------------------------------CGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droVir3

TCTAAATATACAAAAAATCTATCCTAGTCGCACGCTTAAGGCAACCAATGGTATGTAAAGGATGTAT---------GCATA-----AGTATGTGAGTATG------TCTGTA----AACGTGTGTATGTGTA------T--GTGT---------CTGTGTT------TGCGTATG--CGTATGT---------------------------------------------------------------------------------------------------------------------------------------------ATGTG---------------------------------------------------TAGGTGTAGGTGTGTGGATCGATTCAACTG------TT-----------------------AAAGCAAAC------TCACGCGCCGT---------------------------GTTTACG--------------------------------------------AATTACATA--------TT-------------------------ATGATTAT--GTTTATTAAATATTATTAAAGTTATTATTACATAATTTTATTGTT------AC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................GTA----AACGTGTGTATGTGTA------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AAATCTATCCTAGTCGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------TAGGTGTAGGTGTGTGGATCGA..........................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGCCGT---------------------------GTTTACG--------------------------------------------AAT........................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................AAAGGATGTAT---------GCATA-----AGTATGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GATCGATTCAACTG------TT-----------------------AAAGCAA............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGT---------------------------GTTTACG--------------------------------------------AATTACA....................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGTGTGGATCGATTCAACTG------T...........................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................AAAGGATGTAT---------GCATA-----AGTATGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................A----AACGTGTGTATGTGTA------T--GTGT---------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--------------------------------------------AATTACATA--------TT-------------------------ATGATTAT--GTTT.................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC------TCACGCGCCGT---------------------------GTTTACG--------------------------------------------A..........................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGT---------------------------GTTTACG--------------------------------------------AATTACATA--------T.........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................GTT------TGCGTATG--CGTATGT---------------------------------------------------------------------------------------------------------------------------------------------ATGTG---------------------------------------------------TA..............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACTG------TT-----------------------AAAGCAAAC------TCACGCGCC...........................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................AACCAATGGTATGTAAAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAAC------TCACGCGCCGT---------------------------..............................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CGTATG--CGTATGT---------------------------------------------------------------------------------------------------------------------------------------------ATGTG---------------------------------------------------TAGGT...........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................A------T--GTGT---------CTGTGTT------TGCGTATG--CGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GATGTAT---------GCATA-----AGTATGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTACATAATTTTATTGTT------A.	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................T--GTGT---------CTGTGTT------TGCGTATG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GTATGTGTA------T--GTGT---------CTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TCTAAATATACAAAAAATCTATCCTAGTCGCACGCTTAAGGCAACCAATGGTATGTAAAGGATATAA---------ATATGCATA-AGTGC--------G------TGTGTG----TGTGGGTGTGTGT--G------TGTGC---------GT--------ATGTGTGTGT--G-------------------------------GTTGTGTATGTGTTTT---TTTTA----------------------------------------ATG--------GGTGT----------------------------------------------------------------------------------------------------GTG--------GGCAAATTCTACTGCG---------------------------------------------------CCTT---------------------------GT----------------------------------------------------------------TATTNNNNNNNNNNNNNNNNNNNNNNNNNATAA--------------AATCTTATTATTATTATTATTA----TT---ATTGTT------AT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................................................................................................................TTA----------------------------------------ATG--------GGTGT----------------------------------------------------------------------------------------------------GTG--------GGCA............................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
........................................GCAACCAATGGTATGTAAAGGATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
................................CGCTTAAGGCAACCAATGGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0

droWil2

TTTAAACATACAAAAAGTTTATCCTAGTCGCACGCTTAAGGCATCCAATGGTATGTAGTA-------G---TGTATATGTG---------T------GTGTGTGTGTGTGTA----TACG------TGT--GGGTGTGCGTGTT-TG--------------------TGTGT--GCGTGTGTA---------------------------TGTGTATGTG------CTTAAGTGTACA--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------ATAATTAAAAATATATT-ATTTTTATTATTATTATTATTA----TTAATATTATTATACCGAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................GTA----TACG------TGT--GGGTGTGCGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................GTGTGTGTA----TACG------TGT--GGGTGTGCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................GTGTGTA---------------------------TGTGTATGTG------CT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.................TTTATCCTAGTCGCACGCTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................GTGTA---------------------------TGTGTATGTG------CTTAAGTGTAC................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................GT--GCGTGTGTA---------------------------TGTGTATGTG------CT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.........................................................................................................GTGTGTA----TACG------TGT--GGGTGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...............................................................................................................A----TACG------TGT--GGGTGTGCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...............................................................................................................................GT--GGGTGTGCGTGTT-TG--------------------TGTGT--GCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1
......................................................................................................................................................................................A---------------------------TGTGTATGTG------CTTAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.........................................................GTA-------G---TGTATATGTG---------T------GTGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	0	1	1	0
.............................................................................................................................................GTT-TG--------------------TGTGT--GCGTGTGTA---------------------------TGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	1	0	0
...........................................................................................................................................GTGTT-TG--------------------TGTGT--GCGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.45	9	0	1	0	7	1
.........................................................GTA-------G---TGTATATGTG---------T------GTGTGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	1	0	0
..........................................................................ATATGTG---------T------GTGTGTGTGTGTGTA----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.30	6	0	0	0	6	0
..............................................................................................................................................TT-TG--------------------TGTGT--GCGTGTGTA---------------------------TGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	1	0	0
......................................................................................................................................TGTGCGTGTT-TG--------------------TGTGT--GCGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0
........................................................................................................................................................................GTGT--GCGTGTGTA---------------------------TGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	1	0	1	0
...........................................................................................................................................GTGTT-TG--------------------TGTGT--GCGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0
.........................................................................TATATGTG---------T------GTGTGTGTGTGTGTA----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..................................................................................................................................................G--------------------TGTGT--GCGTGTGTA---------------------------TGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0
...........................................................A-------G---TGTATATGTG---------T------GTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0

dp5

TCTTAATATACAAAAAATCTATCCTAGTCGAACGTTTAAGGCGAGCAACGGTATGTAGTC-------G---TCTGTGAGCG----T-----------GTGAG--------------------TGTGTGT--G---------------------G------------------------------------------GTGT--GTCTGTTCTGTGAGTGCTTT--AAAT----------------------------------------------------ACATGTGTATAGTATATGGAGATACACAACCACATACACATATGTATATG---------------------------------------------------TTTATGTAA------------------CTGCGTTTATTCTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................CCTAGTCGAACGTTTAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...................................................................................................................................G---------------------G------------------------------------------GTGT--GTCTGTTCTGTGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
......................CCTAGTCGAACGTTTAAGGCGAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATATG---------------------------------------------------TTTATGTAA------------------CTGCGTTTATT..........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................GTGAGCG----T-----------GTGAG--------------------TGTGTGT--G---------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TGTATAGTATATGGAGATACA...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCTTAATATACAAAAAATCTATCCTAGTCGAACGTTTAAGGCGAGCAACGGTATGTAGTC-------G---TCTGTGAGCG----T-----------GTGAG--------------------TGTGTGT--G---------------------G------------------------------------------GTGT--GTCTGTTCTGTGAGTGCTTT--AAAT----------------------------------------------------ACATGTGTATAGTATATAGAGATACACAACCACATACACATATGTATATG---------------------------------------------------TTTATGTAA------------------CTGCGTTTATTCTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................GTTTAAGGCGAGCAACGGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.................................GTTTAAGGCGAGCAACGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.............................GAACGTTTAAGGCGAGCAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..............................................AACGGTATGTAGTC-------G---TCTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................AGGCGAGCAACGGTATGTAGTC-------G---TC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................AG--------------------TGTGTGT--G---------------------G------------------------------------------GTGT--GTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1

droAna3

TATATA---------------------------------------------------AACAATATAT---------ATATATACA-TATAT--------A------CATATATACATATTTATGTATAT--G------T--GT---GGGTG----TAGAGG------TGTGTAGG--TGTGCAG------------GTGT--AC-GGTTGTGTGTGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTCGTTGCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

CCTAAACATACAAAAGGTGTATCCTAGTCGCACGTTTAAGGCCACCAACGGTATGTAGTC-------GTCGAGTGT-----------------------------------------------G---------------------------------------------------------------------------------TGTTTTGTAAGTGTCTT--GGAACTGAACCATGCACTCATCCCCTCTCGTGGATGCATCTCGTAGGTG--------CATATGTAACACACA----------------------------------------------------------------------------------------------------------------TTG------TA-----------------------CACACACAC------ACACACACC-CA--TGGAATGTTGTTATATAAGTATTTGTTTAAG--------------------------------------------AAGCACACGCTCTGGCATT-------------------------TTAGTTTCA-AA-------------CTGCGAACAATACAA----CG---ACTCTT------AT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATAT-ATAT---------------------------------------------------------------------ATATATA-TATAT--------A------TATGCACATATATA--CATACAT--A------GGTGT---GCCTGTGGGG----GTATAT-AATAT--GCTAACATT-----------------------------TGACTTTTTTCTCATTTCGAAAG--------------------------------------AGGCTTATTTACAAAAGGCCGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGAAATT-------------------------CGACTTGTAGAATTACT-AATATTACCATTACCACTATTA----TTACTATTATTA-------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCTAAATATACAAAAAGTCTATCCTAGTCGCACGTTTAAGGCCACCAACGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------ATGT--GTTTGTTCTGTGAGTGTTTT--AAATTTAGTACATA--AACAT---------------------TTAGAAG--------CATAT----------------------------------------------------------------------------------------------------GTAA------------------CTGCGAGTATTGTTATATACA--CACCACACA-----------CTACACACACACAC---ATTTGGAATGCTGTTATATAATTAATTGTTT-------------------------------------------------------------------------------------------------C----------------------------------------------TTA-------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCTAAGCATACACAAAGTGTATCCTAGTCGCACGTTTAAGGCCACCAACGGTATGTAGTG-------C---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------GTGTGTGTTTGTTCTGTGAGTGTTTTTTGAACTTAGTACATA--CTGAT---------------------TTAGAAG--------CATAT----------------------------------------------------------------------------------------------------GTAA------------------CTGCGATTATTGTTATATGCACACAC--AACA-----------CCACAC-CACACACCACA--TGGAATGCTGTTATATAAGTAATTGTTT-------------------------------------------------------------------------------------------------C----------------------------------------------TTA-------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCTAAATATACATAAAGTGTATCCTAGTCGCACGTTTAAGGCCACCAACGGTATGTAGTC-------G---AATGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------GTGT--GTTTGTTCTGTGAGTGTTTT--AAATTTAGTACATA--CAAAT---------------------TTAGAAG--------CATAT----------------------------------------------------------------------------------------------------GTAA------------------CTGCGATTATTGTTATATGCACACAC------------------------CACACAC---A--TGGAATGCTGTTATATAATTAATTGTTT-------------------------------------------------------------------------------------------------C-----------------------------------------------TA-------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TATGTATATGTATAT-GTATATGT-ATATGTATGTGTATA----------------------------------------------------------------------------TG----TATGTGTATA------T--GTAT---------ATG----TATA--TGTAT--GTGTATATGTATGTGTATATGTATAT--GTATGTG-----TATGT-----------------------------------------------GTATATGTATATGTATATGTATATCGTATATGTATATGTATATGTATATGTATAT-----------------------------------------------------------------GTAT------------------ATGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTATATGTA----TATGTATATGT------AT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGACC-----------------------------------------ATTAATCCCCAATATATGTAT---------ATATATATA-TGTAT--------A------TGTATA----TGTATGTATATGT--A------TATATG-TATAT--------------------------------------------------------------------------------------------------------------------ATATATA--------TGT-C---GCCTCTACGAATTTC--------------------------GTTGGCCGTCTCCATGATTAGTTAGACTTATGTTTAGTGTTTATTGGTGTGATTATATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTATTATTTTTA----TA---ATTTTT------GT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCTAAATATACAAAAAGTCTATCCTAGTCGCACGTTTAAGGCCACCAACGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------ATGT--GTTTGTTCTGTGAGTTCTTTTCAAATTTAGTGCATA--GGCAA---------------------TTAGAAG--------CATAT----------------------------------------------------------------------------------------------------GTAA------------------CTTGAATTATTGTTATAT-CACACAC-----------------------TCACACACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TAGTCAGTCA---CAAGTCAACCCT------------------------GACCTGAAAAGAGT-TATG---T----ATC-------TGTATATATGTATA------TCTCTA----CATATGTGTGTGTGTG------T--GTGT---------GCG----TATCA-TGCAT--GCCTGCATGTCTGTTTGTATGCAGAT--GTTTGTTTTGTATG---------------------------------------------------------CAACTTTTTGTCGAGATGCCATAT-----------------------------------------------------------------------------------------GCGA------------------ATGCAT------------------------CTTTATCGCACCCACACTA-TCGGTCTCGA---------------------------GT------------------------------------------------------------GGGTAGTA-------------------------ATAATACGAATTA----------------------AATTG----TACCTGTTGTT-------T	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................TGTATA------TCTCTA----CATATGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TATGTGTGTGTGTG------T--GTGT---------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................TA----CATATGTGTGTGTGTG------T--GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
......................................................................................................................TATGTGTGTGTGTG------T--GTGT---------GCG----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TA----CATATGTGTGTGTGTG------T--GTGT---------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................ATGTGTGTGTGTG------T--GTGT---------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................TA----CATATGTGTGTGTGTG------T--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................ATGTGTGTGTGTG------T--GTGT---------GCG----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TGTGTGTGTG------T--GTGT---------GCG----TAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TGTGTGTGTG------T--GTGT---------GCG----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TATGTGTGTGTGTG------T--GTGT---------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TA----CATATGTGTGTGTGTG------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................TGTGTGTGTGTG------T--GTGT---------GCG----TA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TGTGTGTGTGTG------T--GTGT---------GCG----T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................ATATGTGTGTGTGTG------T--GTGT---------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSim2

TCTAAATATACAAAAAGTCTATCCTAGTCGCACGTTTAAGGCCACCAATGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------GTGT--GTTTGTTTTGTGAGTGTTTT---ATTTAAGTACATA--AACAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTAA------------------CTGCGATTATTGTTATATACAGACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................CTATCCTAGTCGCACGTTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................AGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGATTATTGTTATATACAG...............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GC-----------------------GA------------------------------------------GTGT--GTTTGTTTTGTGAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TA--AACAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTAA------------------CTGCGA...............................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................TCCTAGTCGCACGTTTAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................AATGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATCCTAGTCGCACGTTTAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GATG--------CAT-T----------------------------------------------------------------------------------------------------GTAA------------------CTGCGATTATTGTTAT.....................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTAA------------------CTGC.................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGTCGCACGTTTAAGGCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TCCTAGTCGCACGTTTAAGGCCACCAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................ATCCTAGTCGCACGTTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................AACAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTAA------------------CT...................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................T---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTA........................................................................................................................................................................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

TCTAAATATACAAAAAGTCTATCCTAGTCGCACGTTTAAGGCCACCAATGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GG------------------------------------------GTGT--GTTTGTTTTGTGAGTGTTTT---ATTTAAGTACATA--AACAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTAT------------------CTGCGATTATTGTTATATACAGACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................TACATA--AACAT---------------------TTAGATG--------CAT-................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.............AAAGTCTATCCTAGTCGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................CAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTAT------------------CTG..................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................GTACATA--AACAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GT.........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.........................................................................................................................................................G------------------------------------------GTGT--GTTTGTTTTGTGAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1

droYak3

TTTAAATATACAAAAAGTCTATCCTAGTCGCACGTTTAAGGCCACCAATGGTATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------GTGT--GTTTGTTTTGTGAATGTTTA---ATTTAAGTACATA--AACAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GTAA------------------CTGCGATTATTGTTATATACACACA-----------------------------CAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......ATACAAAAAGTCTATCCTAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................CACCAATGGTATGTAGTC-------G---AGTGT-----------------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................ATGTAGTC-------G---AGTGT-----------------------------------------------GTGAGC-----------------------GA------------------------------------------GTGT--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................GT--GTTTGTTTTGTGAATGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................GTACATA--AACAT---------------------TTAGATG--------CAT-T----------------------------------------------------------------------------------------------------GT.........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................ACCAATGGTATGTAGTC-------G---AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GTA--------------------------------------------------TGTATGT-------A---TGTATGTATG---------T------ATGTA------TGTA--TGTATG--TATGTATGTA------T--GTAT---GT--ATGT----A------TGTAT--GTATGTATGT---------------------------ATGTATGTA------------------------T---------------------------------------------------------------------------------------------------------------------------------------------GTATGTATGTATGTC--------------T-----------------------------------------------------------------------------------TCCAATTCAGAGTCGCAAAATATTTCAAGTAATCTCTCTTATCGGTCGAG-------CACTGAGTG-------------------------TAGTGTATGTGTTCTTA-AGTGTGATTATTTGCAAGATCA----CAATTACTG--------AT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................G--TATGTATGTA------T--GTAT---GT--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0

dmo_1168

scaffold_6496:15226503-15226653 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.7	-19.2	-19.2