dmo_1151

exon [dmoj_GLEANR_3811:4]; CDS [Dmoj\GI18875-cds]; intron [Dmoj\GI18875-in]; CDS [Dmoj\GI18875-cds]; exon [dmoj_GLEANR_3811:3]; intron [Dmoj\GI18875-in]

##################################################----------------------------------------------------------------------------#####################----------------------------- GATCATCGAGGAGATTGACGCTGATGGATCGGGAACTGTTGATTTTGATGGTGAGCAAACTGGAATGACATGAAATTAAATACAATTAAAACTTTTAAATCCATTTTATTTAATTACTCAATACAGAGTTCATGCAGGTGATGACAGGTAAATTAATATTATATTTATTAATTTAA ************************************************.((((.......((((((.(((...(((((.............)))))...))).)))))).....))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body	V056 head	V041 embryo
......................GATGGATCGGGAACTGTTGATTTTGA................................................................................................................................	26	0	1	2.00	2	2	0	0	0
...................GCTGATGGATCGGGAACT...........................................................................................................................................	18	0	1	1.00	1	0	1	0	0
......................GATGGATCGGGAACTGTTGATTTT..................................................................................................................................	24	0	1	1.00	1	1	0	0	0
...............TGACGCTGATGGATCGGGAACT...........................................................................................................................................	22	0	1	1.00	1	1	0	0	0
...........................................................................................................................ATGAGTTCATGCAGGTGATGACAG.............................	24	2	1	1.00	1	0	1	0	0
...............TGACGCTGATGGATCGGGAAC............................................................................................................................................	21	0	1	1.00	1	1	0	0	0
....................CTGATGGATCGGGAACTGTTGATTTT..................................................................................................................................	26	0	1	1.00	1	1	0	0	0
.....................TGATGGATCGGGAACTGTTG.......................................................................................................................................	20	0	1	1.00	1	1	0	0	0
..........................................................................................................................GATGAGTTCATGCAGGTGATGACA..............................	24	3	1	1.00	1	1	0	0	0
................GACGCTGATGGATCGGGAAC............................................................................................................................................	20	0	1	1.00	1	1	0	0	0
..........GAGATTGACGCTGATGGATCGGGAAC............................................................................................................................................	26	0	1	1.00	1	0	1	0	0
....................CTGATGGATCGGGAACTGTTGAT.....................................................................................................................................	23	0	1	1.00	1	0	1	0	0
.............................................................................................................................GAGTTCATGCAGGTGATGACAGGTTAA........................	27	1	1	1.00	1	1	0	0	0
..............TTGACGCTGATGGATCGGGAACT...........................................................................................................................................	23	0	1	1.00	1	1	0	0	0
....ATCGAGGAGATTGACGCTGATGGAT...................................................................................................................................................	25	0	1	1.00	1	1	0	0	0
.......GAGGAGATTGACGCTGATGGATCGGGA..............................................................................................................................................	27	0	1	1.00	1	1	0	0	0
...................GCTGATGGATCGGGAACTGTTGA......................................................................................................................................	23	0	1	1.00	1	0	1	0	0
......................GATGGATCGGGAACTGTTGATT....................................................................................................................................	22	0	1	1.00	1	1	0	0	0
......................GATGGATCGGGAACTGT.........................................................................................................................................	17	0	1	1.00	1	0	0	1	0
.............................CGGGAACTGTTGATTTTGATG..............................................................................................................................	21	0	2	0.50	1	1	0	0	0
.....................TGATTGATCGGGCACTGTTGC......................................................................................................................................	21	3	2	0.50	1	0	1	0	0
..............................AGGAACTGTAGATGTTGATGG.............................................................................................................................	21	3	5	0.20	1	0	0	0	1
..........................................................................AGTAAATACAATTAAAACG...................................................................................	19	2	20	0.10	2	0	2	0	0
........................................................................GAAGTAAATACAATTAAAAC....................................................................................	20	2	10	0.10	1	0	1	0	0
.........................................................................AAGTAAATACAATTAAAACG...................................................................................	20	2	13	0.08	1	0	1	0	0
....................CTGATTGATGGGGAACTGGT........................................................................................................................................	20	3	14	0.07	1	0	1	0	0
..............TTGACGCTGATAGGCCGG................................................................................................................................................	18	3	20	0.05	1	1	0	0	0

CTAGTAGCTCCTCTAACTGCGACTACCTAGCCCTTGACAACTAAAACTACCACTCGTTTGACCTTACTGTACTTTAATTTATGTTAATTTTGAAAATTTAGGTAAAATAAATTAATGAGTTATGTCTCAAGTACGTCCACTACTGTCCATTTAATTATAATATAAATAATTAAATT ************************************************.((((.......((((((.(((...(((((.............)))))...))).)))))).....))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body
.........................................................................TTCATTTATGTTAATTTTGC...................................................................................	20	2	13	0.31	4	3	1	0
.......................................................................GCTTCATTTATGTTAATTTTG....................................................................................	21	3	20	0.15	3	2	0	1
..........................................................................TCATTTATGTTAATTTTGC...................................................................................	19	2	20	0.10	2	2	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:14604918-14605093 -	dmo_1151	GATCATCGAGGAGATTGACGCTGATGGATCGGGAACTGTTGATTTTGATGGTGAGCAAACTGGA----------------------------------------------ATGACATGAA--A--------TT-------------AAATACAATTAAA-----ACTTTTAA----ATCCA-----------------TTTTATTT------------------AATTACTCAATACAGAGTTCATGCAGGTGATGACAGGTAAAT-TAATATTATATTTA----TTAATT----------TA----------A
droVir3	scaffold_12875:12270535-12270686 +	dvi_6438	GATTATTGAGGAAATCGATGCCGATGGCTCAGGAACTGTTGACTTCGATGGTAAGCAAGCTT-------------------------------------------------GCATTTCTG--C--------TG-------------CATTGCACCCAAA-----AC----------------TAATTCTCATTTC---TTTCAATTTGT---------------ACA-ACTTATTTCAGAGTTTATGCAAGTGATGACAGGTAA--------------------------------------------------
droGri2	scaffold_15245:12073403-12073550 +		CATTATTGAGGAAATCGATGCTGATGGCTCAGGAACGGTTGACTTCGATGGTACGTAAATCT------------------------------------------------CGCATTTCCA--T--------TT-------------GTT-AAAT-----T----------------------TTGTTGCTA-----T---------TAA--AATACTTTGTTTTCGA-ACTAATTACAGAGTTTATGCAAGTGATGACAGGTAA--------------------------------------------------
droWil2	scf2_1100000004513:5211488-5211658 +		GATCATTGAGGAAATCGATGCCGATGGCTCGGGCACGGTTGATTTTGATGGTGCGTATATAT----ACCTATA-TATTCTAAACAATA--------------ATGAA---ATAATCAA--AAC------------------------ATT-----------------------------AATTAATTTCTA-----C---------CTCTT-------------TCA-TCTCTTTACAGAATTTATGCAAGTTATGACAGGTAATTAT-T-----------------AGTT----------TT----------A
dp5	Unknown_group_18:22090-22262 -		GATAATCGAAGAAATTGATGCTGATGGTTCAGGCACCGTTGATTTTGATGGTAAGAGGAGTA------------------------------------------------ATCATTAATA--A--------TT-------------GACTGAAATCAAA-----AA------------------ATTTTCAATTA---TTTTAAAC------------------AAAAA--TTTTTCAGAATTTATGCAAGTTATGACAGGTAATA-TTT-GA----TTTGGTAACTAATTTT--------TA----------A
droPer2	scaffold_57:346204-346374 -		GATAATCGAAGAAATTGATGCTGATGGTTCAGGCACCGTTGATTTTGATGGTAAGAGGAGAA------------------------------------------------ATCATTAATA--A--------TT-------------GACTGAAATCAAA-----AA------------------ATTTTCAATTA---TTTTAAAC------------------AACAA--TTTTTCAGAATTTATGCAAGTTATGACAGGTAATA-TTT-GA----TTTGGTAACTAATT----------TG----------T
droAna3	scaffold_13339:2217438-2217601 +		GATTATAGAAGAAATCGATGCTGATGGTTCGGGAACAGTTGATTTTGATGGTGAGAAATATA-A------ATA-TATAGTAAA-----------------------------------TTAA----TGAGTTTGATTTAA--------AT---GCCA------------------------------T-------AT---------TATTT---------------------TTTACAGAATTTATGCAAGTAATGACAGGTAAATAA-TAGATAAATATG----GTCCTA----------TT----------A
droBip1	scf7180000394512:11737-11874 -		GATAATAGAAGAAATTGACGCAGATGGTTCTGGTACAGTTGACTTTGATGGTAAGAAACAAA----AT-------ATAATAAA-----------------------------------TAAA----AGAGTATTACATAA--------------------------------------------ATTT-------AA---------TATTT---------------------CTTACAGAATTCATGCAAGTAATGACAGGTAAAA-TAA--------------------------------------------
droKik1	scf7180000298291:9240-9394 +		TATTATAGAGGAAATTGATGCTGATGGTTCTGGAACAGTTGACTTTGATGGTATGACAAGAT--------------------------------------------------A------------------TT-------T-----AATTTCACTA-AA-----AAAATTAT----AATTATTAAGTGGTT-----A---------TAACT---------------------TTTTCAGAGTTTATGCAAGTGATGACAGGTAATA-TAT-A-------------TC-----TGTGA----AT----------A
droFic1	scf7180000454058:17721-17862 -		GATAATAGAAGAAATCGATGCGGATGGTTCCGGTACTGTTGATTTTGACGGTATGTACACAT---------------------------------------ATTGAAGCTATCATCAATA-------------------------------------AA-----ATA-----------------ATGT-------TA---------CATCT---------------------TTCACAGAATTTATGCAGGTTATGACAGGTAATT-TAT-A---------------AATC----------TT----------A
droEle1	scf7180000490464:2369-2516 +		GATAATAGAAGAAATTGATGCGGATGGCTCGGGTACAGTTGACTTTGACGGTAAATAGTAAA------------------------------------------------ATAGTTAA--AGA------------------------ATTAGAACCAAA-----AT-----------------AATTTTTG-----T---------TTTTT---------------------TTTACAGAATTTATGCAAGTCATGACAGGTAATA-TAC-A-------------TTAATA----------TT----------A
droRho1	scf7180000763754:4161-4316 -		GATTATAGAAGAAATTGATGCGGATGGCTCTGGTACAGTTGATTTTGACGGTAAGAGTAAAA-------------------------------------------------TA------------------TT-------CACTAAAATTAAAACCAAA-----ATA-----------------ATTT-------AAC--------AATTT---------------------TTTTCAGAATTTATGCAAGTTATGACAGGTAATT-TAC-C-------------TT-AACCTTCAAATATTA----------A
droBia1	scf7180000299434:27021-27155 +		GATGATTGAGGAAATTGATTCAGATGGATCAGGAACAGTTGATTTCGATGGTGAGCAAATTAAAGT-------TTA-----CT---TATTTGGCTGCAATTATTTG-------ACT----------------------------------AAAT-----T------------------------------------T---------TGTAT---------------------ATTTTAGAATTCATGGAAGTGATGACTGGT----------------------------------------------------
droTak1	scf7180000416008:541304-541439 +		GATGATTGAGGAAATTGATTCCGATGGATCGGGCACTGTTGATTTCGATGGTAAACAAATAACA------ATATTA-----TT---TAAATAGTTACAATTGCTTA-------ACT----------------------------------AAAT-----A------------------------------------T---------CTTAT---------------------ATTATAGAATTCATGGAAGTAATGACTGGT----------------------------------------------------
droEug1	scf7180000409039:36680-36843 -		GATTATAGAAGAAATCGATGCTGATGGGTCCGGTACGGTTGACTTCGACGGTAAAAATGCCT-------------------------------------------------T-ATT------------------------AATT--TCTTAAAT-----ACAAAATA-----ATAA-------------------AAT--------TGTAT---------------------TTTACAGAATTTATGCAAGTTATGACAGGTAAAA-TAT-T-------------TA-ATCTTCAAAATATTATATATTCTAAT
dm3	chr2L:5218815-5218953 +		CATCATCGCTGAGATTGACACTGATGGATCCGGTACCGTGGACTTTGATGGTAAGTATTCCC----TT--GTAATT-----AA---CA--------------------------------AATATG------------------------TGAT----------------------GCTGACTAATTGCCA-----T---------TTTCG---------------------ATCACAGAATTCATGGAGATGATGGCGGGCGAGT------------------------------------------------
droSim2	2r:2409012-2409140 -		GATAATAGAAGAAATTGATGCGGATGGATCCGGTACGGTTGATTTTGACGGTAAGTAGTTTT----AT-------------------------------ATATTTA-------ATC----------------------------------AAAC-----ATTCAATA-----ATAA-------------------CA---------TTTTC---------------------ATTGCAGAATTTATGCAAGTGATGACAGGTAA--------------------------------------------------
droSec2	scaffold_26:38598-38726 -		GATAATAGAAGAAATTGATGCGGATGGATCCGGTACGGTTGATTTTGACGGTAAGTAGTTTT----AT-------------------------------ATATTTA-------ATC----------------------------------AAAC-----ATTCAGTA-----ATAA-------------------CA---------TTTTC---------------------ATTGCAGAATTTATGCAAGTGATGACAGGTAA--------------------------------------------------
droYak3	2L:13980349-13980486 -		CATCATCGCTGAGATTGATACCGATGGATCTGGTACCGTGGACTTTGATGGTAAGTAATCCC-A------GTAACA-----TA---CA--------------------------------AAACTT------------------------ATAT----------------------GCTCACTTATTGCCA-----T---------TTTCG---------------------ATCACAGAATTCATGGAGATGATGGCGGGCGAGT------------------------------------------------
droEre2	scaffold_4929:21019770-21019926 +		GATCATAGAAGAAATTGATGCGGATGGGTCTGGTACGGTTGATTTTGACGGTAAGTTGCCTAACAT-------TTA----------------------------TAATTTATAATT----------------------------------AAAC-----ATTCAATG-----ATAC-------------------AA---------TTTTT---------------------ATTGCAGAATTTATGCAAGTTATGACAGGTAATA-TAT-G-------------TC-ATCCTTAAAA---AA----------A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GATCATCGAGGAGATTGACGCTGATGGATCGGGAACTGTTGATTTTGATGGTGAGCAAACTGGA----------------------------------------------ATGACATGAA--A--------TT-------------AAATACAATTAAA-----ACTTTTAA----ATCCA-----------------TTTTATTT------------------AATTACTCAATACAGAGTTCATGCAGGTGATGACAGGTAAAT-TAATATTATATTTA----TTAATT----------TA----------A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................GATGGATCGGGAACTGTTGATTTTGA..........................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
...................GCTGATGGATCGGGAACT.....................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
......................GATGGATCGGGAACTGTTGATTTT............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...............TGACGCTGATGGATCGGGAACT.....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...............TGACGCTGATGGATCGGGAAC......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................CTGATGGATCGGGAACTGTTGATTTT............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.....................TGATGGATCGGGAACTGTTG.................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
................GACGCTGATGGATCGGGAAC......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..........GAGATTGACGCTGATGGATCGGGAAC......................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................CTGATGGATCGGGAACTGTTGAT...............................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............TTGACGCTGATGGATCGGGAACT.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
....ATCGAGGAGATTGACGCTGATGGAT.............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......GAGGAGATTGACGCTGATGGATCGGGA........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...................GCTGATGGATCGGGAACTGTTGA................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................GATGGATCGGGAACTGTTGATT..............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................GATGGATCGGGAACTGT...................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	1	0	0
.............................CGGGAACTGTTGATTTTGATG........................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1

droVir3

GATTATTGAGGAAATCGATGCCGATGGCTCAGGAACTGTTGACTTCGATGGTAAGCAAGCTT-------------------------------------------------GCATTTCTG--C--------TG-------------CATTGCACCCAAA-----AC----------------TAATTCTCATTTC---TTTCAATTTGT---------------ACA-ACTTATTTCAGAGTTTATGCAAGTGATGACAGGTAA--------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............ATCGATGCCGATGGCTCAGGAACT.....................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AAATCGATGCCGATGGCTCA...........................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATCGATGCCGATGGCTCAGGAACT.....................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATCGATGCCGATGGCTCAGGAA.......................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AGGAAATCGATGCCGATGGC..............................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...TATTGAGGAAATCGATGCCGAT.................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATTGAGGAAATCGATGCCGATGGCT.............................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATCGATGCCGATGGCTCAGGAAC......................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCAGGAACTGTTGACTTCGATGA.......................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAAATCGATGCCGATGGCTCA...........................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GAACTGTTGACTTCGATGA.......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATGCCGATGGCTCAGGAACTGTTGAC...............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TCGATGCCGATGGCTCAGGA........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GATGCCGATGGCTCAGGAAC......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GATGGCTCAGGAACTGTTGACTTCGAT.........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AAATCGATGCCGATGGCTCC...........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AAATCGATGCCGATGGCTCAGGAACT.....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AAATCGATGCCGATGGCTCAG..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCCGATGGCTCAGGAACTGT...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GGAAATCGATGCCGATGGCT.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CGATGGCTCAGGAACTGTTGACT..............................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAGGAAATCGATGCCGATGGCT.............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GATGGCTCAGGAACTGTTGA................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TCGATGCCGATGGCTCAGGAA.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GATTATTGAGGAAATCGATGCCGATGGC..............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCCGATGGCTCAGGAACTGTTGACT..............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GATGGCTCAGGAACTGTTGACT..............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATCGATGCCGATGGCTCAGG.........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GATGGCTCAGGAACTGTTGACTTCG...........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATGCCGATGGCTCAGGAACTGTTG.................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATCGATGCCGATGGCTCAGGAACTG....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATCGATGCCGATGGCTCAGGAACTGT...................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCCGATGGCTCAGGAACTGTTGAC...............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAGGAACTGTTGACTTCGATG........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GGCTCAGGAACTGTTGACTTCGATG........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATCGATGCCGATGGCTCA...........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGGAACTGTTGACTTCGATGA.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGAGGAAATCGATGCCGAT.................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AGGAAATCGATGCCGATGGCT.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATCGATGCCGATGGCTCAG..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTGAGGAAATCGATGCCGATGGCTCAGGAACTGTTGACTTCGAT.........................................................................................................................................................................................................................................................................	44	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....ATTGAGGAAATCGATGCCGATGGT..............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TATTGAGGAAATCGATGCCGATGGCTC............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GATTATTGAGGAAATCGATGCC....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAGGAAATCGATGCCGATGGCTCAGG.........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CGATGCCGATGGCTCAGGA........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGGAACTGTTGACTTCGATGAGT.....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTGAGGAAATCGATGCCGATGGCT.............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATCGATGCCGATGGCTCAGGAA.......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TATTGAGGAAATCGATGCCG...................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATCGATGCCGATGGCTCAGGAACTGT...................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TCGATGCCGATGGCTCAGGAACTG....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CGATGCCGATGGCTCAGGAACTG....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGAGGAAATCGATGCCGATGGCTCA...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATCGATGCCGATGGCTCAGGA........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TGCAAGTGATGACAGGCT...................................................	18	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

CATTATTGAGGAAATCGATGCTGATGGCTCAGGAACGGTTGACTTCGATGGTACGTAAATCT------------------------------------------------CGCATTTCCA--T--------TT-------------GTT-AAAT-----T----------------------TTGTTGCTA-----T---------TAA--AATACTTTGTTTTCGA-ACTAATTACAGAGTTTATGCAAGTGATGACAGGTAA--------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............TCGATGCTGATGGCTCAGGAACGGTTG.................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1
....................CTGATGGCTCAGGAACGGTT..................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
................GATGCTGATGGCTCAGGAA.......................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
...TATTGAGGAAATCGATGCTGATGGCT.............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1

droWil2

GATCATTGAGGAAATCGATGCCGATGGCTCGGGCACGGTTGATTTTGATGGTGCGTATATAT----ACCTATA-TATTCTAAACAATA--------------ATGAA---ATAATCAA--AAC------------------------ATT-----------------------------AATTAATTTCTA-----C---------CTCTT-------------TCA-TCTCTTTACAGAATTTATGCAAGTTATGACAGGTAATTAT-T-----------------AGTT----------TT----------A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................TCGGGCACGGTTGATTTTGATGAAT.....................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0
...........AAATCGATGCCGATGGCTC............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...CATTGAGGAAATCGATGCCGATGGCTCG...........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.............................CGGGCACGGTTGATTTTGA..........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
......................GATGGCTCGGGCACGGTTGA................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0

dp5

GATAATCGAAGAAATTGATGCTGATGGTTCAGGCACCGTTGATTTTGATGGTAAGAGGAGTA------------------------------------------------ATCATTAATA--A--------TT-------------GACTGAAATCAAA-----AA------------------ATTTTCAATTA---TTTTAAAC------------------AAAAA--TTTTTCAGAATTTATGCAAGTTATGACAGGTAATA-TTT-GA----TTTGGTAACTAATTTT--------TA----------A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....ATCGAAGAAATTGATGCTG...................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0
...................GCTGATGGTTCAGGCACCGTTG.................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0
...............TGATGCTGATGGTTCAGGCACCGTTG.................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0
................GATGCTGATGGTTCAGGCACCGTT..................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................................................................GAATTTATGCAAGTTATGAC........................................................	20	1	2.00	2	0	1	0	0	0	0	0	0	1	0
..........GAAATTGATGCTGATGGTT.............................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....ATCGAAGAAATTGATGCTGAT.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..TAATCGAAGAAATTGATGCTGAT.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................ATTTATGCAAGTTATGACA.......................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................AGGCACCGTTGATTTTGATGAA......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........AAGAAATTGATGCTGATGGTT.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......CGAAGAAATTGATGCTGATGGTT.............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............AATTGATGCTGATGGTTCAGGCA.......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................AGGCACCGTTGATTTTGATG........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................GATGCTGATGGTTCAGGCACC.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............ATTGATGCTGATGGTTCAGGCA.......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............TGATGCTGATGGTTCAGGCACCGT...................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........AAATTGATGCTGATGGTTCAG..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TTTATGCAAGTTATGACAGGTT...................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................CAGGCACCGTTGATTTTGATG........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............ATTGATGCTGATGGTTCAGGCAC......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........AAATTGATGCTGATGGTTCAGGC........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................TGCTGATGGTTCAGGCACCGTTG.................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................TGCTGATGGTTCAGGCACCGT...................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................ATGCTGATGGTTCAGGCACC.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............ATTGATGCTGATGGTTCAGGCACCG....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................TGGTTCAGGCACCGTTGATTTTGATG........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................AGGCACCGTTGATTTTGAT.........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................GGCACCGTTGATTTTGAT.........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............TTGATGCTGATGGTTCAGGC........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GAATTTATGCAAGTTATGACA.......................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................TTGATTTTGATGGTAAGAGG................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............ATTGATGCTGATGGTTCAGGCACCGTT..................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................GATGGTTCAGGCACCGTTG.................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................ATGCAAGTTATGACAGGTT...................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....ATCGAAGAAATTGATGCTGATGGTTCA...........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........AAGAAATTGATGCTGATGGTTCAGGCACC.....................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............AATTGATGCTGATGGTTC............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........AAATTGATGCTGATGGTTCAGGCACCG....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................ATTTATGCAAGTTATGACAGG.....................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............ATTGATGCTGATGGTTCAGGCACCGTTG.................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

GATAATCGAAGAAATTGATGCTGATGGTTCAGGCACCGTTGATTTTGATGGTAAGAGGAGAA------------------------------------------------ATCATTAATA--A--------TT-------------GACTGAAATCAAA-----AA------------------ATTTTCAATTA---TTTTAAAC------------------AACAA--TTTTTCAGAATTTATGCAAGTTATGACAGGTAATA-TTT-GA----TTTGGTAACTAATT----------TG----------T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................GATGGTTCAGGCACCGTTG.................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	1	0	0	0	4
.......GAAGAAATTGATGCTGATG................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	1
........AAGAAATTGATGCTGATGGTTC............................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
....................................................................................................................................................................................................................................................ATGCAAGTTATGACAGGTT...................................................	19	1	2.00	2	0	0	0	0	0	2
...........................................TTTGATGGTAAGAGGAGAA------------------------------------------------............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
................GATGCTGATGGTTCAGGC........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
....ATCGAAGAAATTGATGCTGATGGTT.............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........AAGAAATTGATGCTGATGGTTCA...........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................GATGGTTCAGGCACCGTTGATTT.............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.ATAATCGAAGAAATTGATGCTGATGGT..............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.................ATGCTGATGGTTCAGGCA.......................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
..................................................................................................................................................................................................................................................TTATGCAAGTTATGACAG......................................................	18	1	1.00	1	0	0	0	0	0	1
...................GCTGATGGTTCAGGCACCGTTG.................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........AAATTGATGCTGATGGTTCA...........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
......................GATGGTTCAGGCACCGTTGATT..............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
GATAATCGAAGAAATTGAT.......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
........AAGAAATTGATGCTGATGGT..............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................GCTGATGGTTCAGGCACCGTTGA................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........AAGAAATTGATGCTGATG................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.................ATGCTGATGGTTCAGGCACCGTT..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........AAATTGATGCTGATGGTT.............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
......CGAAGAAATTGATGCTGAT.................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
......CGAAGAAATTGATGCTGATGG...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..............................AGGCACCGTTGATTTTGAT.........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...............TGATGCTGATGGTTCAGGC........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
......CGAAGAAATTGATGCTGATGGT..............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................CAGGCACCGTTGATTTTGATGAAT.....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................................GCACCGTTGATTTTGATG........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...............TGATGCTGATGGTTCAGGCACCGTT..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............TTGATGCTGATGGTTCAGGCA.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................TCAGGCACCGTTGATTTTGATGAAT.....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1

droAna3

GATTATAGAAGAAATCGATGCTGATGGTTCGGGAACAGTTGATTTTGATGGTGAGAAATATA-A------ATA-TATAGTAAA-----------------------------------TTAA----TGAGTTTGATTTAA--------AT---GCCA------------------------------T-------AT---------TATTT---------------------TTTACAGAATTTATGCAAGTAATGACAGGTAAATAA-TAGATAAATATG----GTCCTA----------TT----------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............CGATGCTGATGGTTCGGGAACA.....................................................................................................................................................................................................................................................................................	22	1	5.00	5	1	0	0	0	0	4
......................GATGGTTCGGGAACAGTTGA................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	4	0
......................GATGGTTCGGGAACAGTTGATT..............................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	2	1
..........GAAATCGATGCTGATGGTTCGGGAACA.....................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	3	0
..................TGCTGATGGTTCGGGAAC......................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.................ATGCTGATGGTTCGGGAAC......................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	1	0
................GATGCTGATGGTTCGGGA........................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0
............................TCGGGAACAGTTGATTTTGATGAA......................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
................GATGCTGATGGTTCGGGAACA.....................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	1	0
...................GCTGATGGTTCGGGAACA.....................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2
.............ATCGATGCTGATGGTTCGGGAAC......................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	1	1
................GATGCTGATGGTTCGGGAA.......................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0
..............TCGATGCTGATGGTTCGGGAACA.....................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0
.............ATCGATGCTGATGGTTCGGGAACA.....................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	1	1
................GATGCTGATGGTTCGGGAACAGTTGAG...............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
......................GATGGTTCGGGAACAGTTGATTTT............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..........................GTTCGGGAACAGTTGATTTTGATGA.......................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................GATGGTTCGGGAACAGTTGATTTTG...........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
............................TCGGGAACAGTTGATTTTGA..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
................GATGCTGATGGTTCGGGAAC......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................ATGCTGATGGTTCGGGAACA.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................GATGCTGATGGTTCGGGAACC.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
.......................ATGGTTCGGGAACAGTTGATTT.............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.........AGAAATCGATGCTGATGGTTCGGGAAC......................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............TCGATGCTGATGGTTCGGGAAC......................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............CGATGCTGATGGTTCGGG.........................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.........................GGTTCGGGAACAGTTGATTTTGATG........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...................GCTGATGGTTCGGGAACAGTT..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..TTATAGAAGAAATCGATGCTG...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
........AAGAAATCGATGCTGATGGTTCGGGA........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
...................GCTGATGGTTCGGGAACAGTTGATT..............................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................CGGGAACAGTTGATTTTGATG........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
............................TCGGGAACAGTTGATTTTG...........................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
................GATGCTGATGGTTCGGGAACAG....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.....................TGATGGTTCGGGAACAGTTGATTT.............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...............CGATGCTGATGGTTCGGGAACAGTTGAT...............................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................TCGGGAACAGTTGATTTTGATGAAT.....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........AAGAAATCGATGCTGATGGTT.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
......................GATGGTTCGGGAACAGTTGATTT.............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..........GAAATCGATGCTGATGGTTCGGGAA.......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
................GATGCTGATGGTTCGGGAACAGTTGAT...............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
....................CTGATGGTTCGGGAACAGT...................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....ATAGAAGAAATCGATGCTGATGGT..............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.......................ATGGTTCGGGAACAGTTGAT...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................ATTTATGCAAGTAATGACA.......................................................	19	1	1.00	1	0	0	0	0	1	0
........................TGGTTCGGGAACAGTTGATTTTGATGA.......................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.............ATCGATGCTGATGGTTCGGGA........................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............ATCGATGCTGATGGTTCGGG.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.........................GGTTCGGGAACAGTTGATT..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............................TCGGGAACAGTTGATTTTGATG........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.......GAAGAAATCGATGCTGATG................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.............ATCGATGCTGATGGTTCGGGAA.......................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................GATGCTGATGGTTCGGGAACAGTTGA................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................GTTCGGGAACAGTTGATTTTGATG........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..............TCGATGCTGATGGTTCGGGAACAGTTG.................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...TATAGAAGAAATCGATGCTGATGGTTC............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............AATCGATGCTGATGGTTCGGG.........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......GAAGAAATCGATGCTGATGGTT.............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......AGAAGAAATCGATGCTGATGGTT.............................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................GAACAGTTGATTTTGATGAAT.....................................................................................................................................................................................................................................................................	21	9	0.22	2	0	0	0	0	0	2

droBip1

GATAATAGAAGAAATTGACGCAGATGGTTCTGGTACAGTTGACTTTGATGGTAAGAAACAAA----AT-------ATAATAAA-----------------------------------TAAA----AGAGTATTACATAA--------------------------------------------ATTT-------AA---------TATTT---------------------CTTACAGAATTCATGCAAGTAATGACAGGTAAAA-TAA--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TATTATAGAGGAAATTGATGCTGATGGTTCTGGAACAGTTGACTTTGATGGTATGACAAGAT--------------------------------------------------A------------------TT-------T-----AATTTCACTA-AA-----AAAATTAT----AATTATTAAGTGGTT-----A---------TAACT---------------------TTTTCAGAGTTTATGCAAGTGATGACAGGTAATA-TAT-A-------------TC-----TGTGA----AT----------A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GATAATAGAAGAAATCGATGCGGATGGTTCCGGTACTGTTGATTTTGACGGTATGTACACAT---------------------------------------ATTGAAGCTATCATCAATA-------------------------------------AA-----ATA-----------------ATGT-------TA---------CATCT---------------------TTCACAGAATTTATGCAGGTTATGACAGGTAATT-TAT-A---------------AATC----------TT----------A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GATAATAGAAGAAATTGATGCGGATGGCTCGGGTACAGTTGACTTTGACGGTAAATAGTAAA------------------------------------------------ATAGTTAA--AGA------------------------ATTAGAACCAAA-----AT-----------------AATTTTTG-----T---------TTTTT---------------------TTTACAGAATTTATGCAAGTCATGACAGGTAATA-TAC-A-------------TTAATA----------TT----------A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GATTATAGAAGAAATTGATGCGGATGGCTCTGGTACAGTTGATTTTGACGGTAAGAGTAAAA-------------------------------------------------TA------------------TT-------CACTAAAATTAAAACCAAA-----ATA-----------------ATTT-------AAC--------AATTT---------------------TTTTCAGAATTTATGCAAGTTATGACAGGTAATT-TAC-C-------------TT-AACCTTCAAATATTA----------A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GATGATTGAGGAAATTGATTCAGATGGATCAGGAACAGTTGATTTCGATGGTGAGCAAATTAAAGT-------TTA-----CT---TATTTGGCTGCAATTATTTG-------ACT----------------------------------AAAT-----T------------------------------------T---------TGTAT---------------------ATTTTAGAATTCATGGAAGTGATGACTGGT----------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GATGATTGAGGAAATTGATTCCGATGGATCGGGCACTGTTGATTTCGATGGTAAACAAATAACA------ATATTA-----TT---TAAATAGTTACAATTGCTTA-------ACT----------------------------------AAAT-----A------------------------------------T---------CTTAT---------------------ATTATAGAATTCATGGAAGTAATGACTGGT----------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GATTATAGAAGAAATCGATGCTGATGGGTCCGGTACGGTTGACTTCGACGGTAAAAATGCCT-------------------------------------------------T-ATT------------------------AATT--TCTTAAAT-----ACAAAATA-----ATAA-------------------AAT--------TGTAT---------------------TTTACAGAATTTATGCAAGTTATGACAGGTAAAA-TAT-T-------------TA-ATCTTCAAAATATTATATATTCTAAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

CATCATCGCTGAGATTGACACTGATGGATCCGGTACCGTGGACTTTGATGGTAAGTATTCCC----TT--GTAATT-----AA---CA--------------------------------AATATG------------------------TGAT----------------------GCTGACTAATTGCCA-----T---------TTTCG---------------------ATCACAGAATTCATGGAGATGATGGCGGGCGAGT------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................CGGTACCGTGGACTTTGATG........................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CTAATTGCCA-----T---------TTTCG---------------------ATCACAG...........................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GTACCGTGGACTTTGATG........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TGACACTGATGGATCCGGTACCGTG..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ATCCGGTACCGTGGACTTTGATGG.......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................TGATGGATCCGGTACCGT...................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GGTACCGTGGACTTTGATG........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................CCGGTACCGTGGACTTTGATG........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TTGACACTGATGGATCCGGTACCGT...................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ATGGAGATGATGGCGGGCGAGT------------------------------------------------	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTGATGGATCCGGTACCGT...................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CGTGGACTTTGATGGTAAGTATTCC.............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GATGGATCCGGTACCGTGGACTT.............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GCTGACTAATTGCCA-----T---------TTTCG---------------------ATCACAG...........................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGAGATTGACACTGATGGATCCATC........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TACCGTGGACTTTGATGAAT.....................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CTGAGATTGACACTGATATC..............................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GATAATAGAAGAAATTGATGCGGATGGATCCGGTACGGTTGATTTTGACGGTAAGTAGTTTT----AT-------------------------------ATATTTA-------ATC----------------------------------AAAC-----ATTCAATA-----ATAA-------------------CA---------TTTTC---------------------ATTGCAGAATTTATGCAAGTGATGACAGGTAA--------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............ATTGATGCGGATGGATCC...........................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATTGATGCGGATGGATC............................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATAGAAGAAATTGATGCGGATGGATC............................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATTGATGCGGATGGATCCGG.........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....TAGAAGAAATTGATGCGGAT.................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAAATTGATGCGGATGGATCCG..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GGTACGGTTGATTTTGAC.........................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GGTACGGTTGATTTTGACGAAT.....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GATGGATCCGGTACGGTTGAT...............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GGATCCGGTACGGTTGATTTTGACG........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGGATGGATCCGGTACGGTTGATT..............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGAAATTGATGCGGATGGATCC...........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GATGGATCCGGTACGGTTGATTT.............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AATTGATGCGGATGGATCCG..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATAGAAGAAATTGATGCGGATGGATCCG..........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATTGATGCGGATGGATCCGGTACG.....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ATCCGGTACGGTTGATTTTGACG........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GATAATAGAAGAAATTGATGCGGATGGATCCGGTACGGTTGATTTTGACGGTAAGTAGTTTT----AT-------------------------------ATATTTA-------ATC----------------------------------AAAC-----ATTCAGTA-----ATAA-------------------CA---------TTTTC---------------------ATTGCAGAATTTATGCAAGTGATGACAGGTAA--------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............ATTGATGCGGATGGATCCGGTACG.....................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0
.............ATTGATGCGGATGGATCCGGTACGGT...................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	3	0	0
.............ATTGATGCGGATGGATCCGGTAC......................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	1	0	0
..............TTGATGCGGATGGATCCGGTACGGT...................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
............AATTGATGCGGATGGATCCGGTACGG....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
...............TGATGCGGATGGATCCGGTAC......................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
...AATAGAAGAAATTGATGCG....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
.......GAAGAAATTGATGCGGATGGATCCGGT........................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
....ATAGAAGAAATTGATGCGGATGGATC............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................................................AATTTATGCAAGTGATGACA.......................................................	20	1	1.00	1	0	1	0	0
..............TTGATGCGGATGGATCCGGT........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
......................GATGGATCCGGTACGGTTGATTTTGACG........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
........................................................................................................................................................AC-----ATTCAGTA-----ATAA-------------------CA---------TTTTC---------------------ATTGCAG...........................................................................	28	1	1.00	1	1	0	0	0
...........AAATTGATGCGGATGGATCCGGT........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
...AATAGAAGAAATTGATGCGGATG................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
.......GAAGAAATTGATGCGGATGGATCCG..........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1
................GATGCGGATGGATCCGGTACG.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
...AATAGAAGAAATTGATGCGGATGGA..............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................TTTATGCAAGTGATGACAG......................................................	19	1	1.00	1	1	0	0	0
......................GATGGATCCGGTACGGTTGA................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1

droYak3

CATCATCGCTGAGATTGATACCGATGGATCTGGTACCGTGGACTTTGATGGTAAGTAATCCC-A------GTAACA-----TA---CA--------------------------------AAACTT------------------------ATAT----------------------GCTCACTTATTGCCA-----T---------TTTCG---------------------ATCACAGAATTCATGGAGATGATGGCGGGCGAGT------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................GATACCGATGGATCTGGTACCGTGG.................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................CATGGAGATGATGGCGGGC....................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................GAATTCATGGAGATGATG..........................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GATCATAGAAGAAATTGATGCGGATGGGTCTGGTACGGTTGATTTTGACGGTAAGTTGCCTAACAT-------TTA----------------------------TAATTTATAATT----------------------------------AAAC-----ATTCAATG-----ATAC-------------------AA---------TTTTT---------------------ATTGCAGAATTTATGCAAGTTATGACAGGTAATA-TAT-G-------------TC-ATCCTTAAAA---AA----------A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................GGTACGGTTGATTTTGACG........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..............................TGGTACGGTTGATTTTGACG........................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..........GAAATTGATGCGGATGGGT.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.......GAAGAAATTGATGCGGATGG...............................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.........................GGGTCTGGTACGGTTGATTTTGA..........................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TTATGCAAGTTATGACAGGT....................................................	20	1	1.00	1	1	0	0	0	0	0	0
................GATGCGGATGGGTCTGGTACG.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................TGGGTCTGGTACGGTTGATTT.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....TAGAAGAAATTGATGCGGATGGGTCT...........................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...........AAATTGATGCGGATGGGTCTGGTA.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...............TGATGCGGATGGGTCTGGTAC......................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.............ATTGATGCGGATGGGTCTG..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.........AGAAATTGATGCGGATGGGTCTGGT........................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
................................GTACGGTTGATTTTGACGA.......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.................ATGCGGATGGGTCTGGTA.......................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.............................CTGGTACGGTTGATTTTGACG........................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0

dmo_1151

scaffold_6496:14604968-14605043 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads