ID:

dmo_1148

 Coordinate:

scaffold_6496:14110433-14110583 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.12 -11.92 -11.92

Flybase annnotation

exon [dmoj_GLEANR_3850:1]; CDS [Dmoj\GI18914-cds]; intron [Dmoj\GI18914-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+
(ATG)nSimple_repeatSimple_repeat+
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATCTATGAGGCGCCCACCTGGACACAATCGCTACTCAATGACCAGTCCTTGTACGTAACATCCAAGGGCGTAGGTAGCCGACATGTCGATGCTTCATTATCAACAACAAACACATCCACAACAACAACAATAACCACAACCACATCATCATCTCCATCAACATTATCATCATCATGCACAACAGCCACCAGCTCTGTCTCGACTCTAGTCTCTAGTCCAGCCTCTACCCCATCCACTCTGCCTCTGTCCAC
**************************************************..............(((((...(((.((...((((..((((...........................................................................))))..)))).......)).))).)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V049
head
 V056
head
.........................................................................................................................................................CTATCAACATTATCATCATCA............................................................................. 21 1 1 6.00 6 6 0 0 0
.....................................................................................................................................................ATCACTATCAACATTATCATCATCA............................................................................. 25 2 5 3.80 19 19 0 0 0
...........................................................................................................................................................ATCAACATTATCATCATCAGTCA......................................................................... 23 2 1 2.00 2 2 0 0 0
...........................................................................................................................................................ATCAACATTATCATCATCAGTCAT........................................................................ 24 3 7 1.57 11 9 2 0 0
.....................................................................................................................................................ATCACTATCAACATTATCATCATC.............................................................................. 24 2 6 1.33 8 8 0 0 0
...........................................................................................................................................................ATCAACATTATCATCATCAGTC.......................................................................... 22 2 7 1.14 8 4 4 0 0
.........................................................................................................................................................CTATCAACATTATCATCATC.............................................................................. 20 1 1 1.00 1 1 0 0 0
...........................................................................................................................................................ATCAACATTATCATCATCATG........................................................................... 21 0 1 1.00 1 0 0 1 0
.....................................................................................................................................................ATCACTATCAACATTATCATCAT............................................................................... 23 2 11 0.82 9 9 0 0 0
.............................................................................................................................................................CAACATTATCATCATCAGTCA......................................................................... 21 2 3 0.67 2 0 1 0 1
.......................................................................................................................................................CACTATCAACATTATCATCATCA............................................................................. 23 2 12 0.50 6 6 0 0 0
....ATGAGGCGCTCAACTGGAC.................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0
...........................................................................................CTTCAGTATCAACAACTAA............................................................................................................................................. 19 2 3 0.33 1 1 0 0 0
..........................................................................................................................................................TATCAACATTATCATCATCACG........................................................................... 22 2 3 0.33 1 1 0 0 0
............................................................................................................................................................TCAACATTATCATCATCAGTC.......................................................................... 21 2 10 0.30 3 1 2 0 0
.............................................................................................................................................................CAACATTATCATCATCAGTC.......................................................................... 20 2 14 0.29 4 2 2 0 0
.............................................................................................................................................................CGACATTATCATCAGCATGC.......................................................................... 20 2 4 0.25 1 1 0 0 0
.......................................................................................................................................................CACTATCAACATTATCATCAT............................................................................... 21 2 20 0.25 5 5 0 0 0
......................................................................................................................................................TCACTATCAACATTATCATCATCA............................................................................. 24 2 6 0.17 1 1 0 0 0
.....................................................................................................................................................ATCACTATCAACATTATCATCATCAG............................................................................ 26 3 13 0.15 2 2 0 0 0
...........................................................................................................................................................ATCAACATTATCATCATCA............................................................................. 19 0 7 0.14 1 1 0 0 0
.....................................................................................................................................................ATCACTATCAACATTATCATCA................................................................................ 22 2 14 0.14 2 2 0 0 0
.........................................................................................................................................................CTATCAACATTATCATCATCAGT........................................................................... 23 3 15 0.13 2 2 0 0 0
.............................................................................................................................................................CAACATTATCATCATCAGTCAT........................................................................ 22 3 17 0.12 2 2 0 0 0
......................................................................................................................................................TCACTATCAACATTATCATCA................................................................................ 21 2 18 0.11 2 2 0 0 0
..............................................................................................................................................................AACATTATCATCATCAGTCA......................................................................... 20 2 9 0.11 1 0 1 0 0
...........................................................................................CTTCAGTATCAACAACTAAA............................................................................................................................................ 20 3 20 0.10 2 2 0 0 0
..........................................................................................................................................................TATCAACATTATCATCATCA............................................................................. 20 1 13 0.08 1 1 0 0 0
......................................................................................................................................................TCACTATCAACATTATCATCAT............................................................................... 22 2 13 0.08 1 1 0 0 0
............................................................................................................................................................TCAACATTATCATCATCAGTCAT........................................................................ 23 3 13 0.08 1 1 0 0 0
.......................................................................................................................................................CACTATCAACAGTATCATCATC.............................................................................. 22 3 20 0.05 1 1 0 0 0
..............................................................................................................................................................AACATTATCATCATCAGTC.......................................................................... 19 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

TAGATACTCCGCGGGTGGACCTGTGTTAGCGATGAGTTACTGGTCAGGAACATGCATTGTAGGTTCCCGCATCCATCGGCTGTACAGCTACGAAGTAATAGTTGTTGTTTGTGTAGGTGTTGTTGTTGTTATTGGTGTTGGTGTAGTAGTAGAGGTAGTTGTAATAGTAGTAGTACGTGTTGTCGGTGGTCGAGACAGAGCTGAGATCAGAGATCAGGTCGGAGATGGGGTAGGTGAGACGGAGACAGGTG
**************************************************..............(((((...(((.((...((((..((((...........................................................................))))..)))).......)).))).)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 V056
head
 V041
embryo
 V049
head
...........................................................................................................................................................TAGTTGTAATAGTAGTAGTCAG.......................................................................... 22 2 7 24.14 169 129 31 6 0 3
........................................................................................................................................................TGATAGTTGTAATAGTAGTAG.............................................................................. 21 2 20 19.35 387 340 44 2 0 1
.....................................................................................................................................................TAGTGATAGTTGTAATAGTAGTAG.............................................................................. 24 2 6 12.67 76 68 8 0 0 0
...........................................................................................................................................................TAGTTGTAATAGTAGTAGTCAGT......................................................................... 23 2 1 6.00 6 1 4 1 0 0
.............................................................................................................................................................GTTGTAATAGTAGTAGTCAG.......................................................................... 20 2 14 5.64 79 56 23 0 0 0
...........................................................................................................................................................TAGTTGTAATAGTAGTAG.............................................................................. 18 0 8 4.38 35 16 17 1 0 1
..............................................................................................................................................................TTGTAATAGTAGTAGTCAG.......................................................................... 19 2 20 4.00 80 43 36 1 0 0
.........................................................................................................................................................GATAGTTGTAATAGTAGTAG.............................................................................. 20 1 1 3.00 3 2 1 0 0 0
...........................................................................................................................................................TAGTTGTAATAGTAGTAGT............................................................................. 19 0 7 2.86 20 14 6 0 0 0
.............................................................................................................................................................GTTGTAATAGTAGTAGTCAGT......................................................................... 21 2 3 2.33 7 3 4 0 0 0
...........................................................................................................................................................TAGTTGTAATAGTAGTAGTC............................................................................ 20 1 17 2.00 34 24 9 1 0 0
.........................................................................................................................................................GATAGTTGTAATAGTAGTAGT............................................................................. 21 1 1 2.00 2 0 2 0 0 0
...........................................................................................................................................................TAGTTGTAATAGTAGTAGTCAGTA........................................................................ 24 3 7 1.86 13 11 2 0 0 0
........................................................................................................................................................TGATAGTTGTAATAGTAGTAGT............................................................................. 22 2 16 1.75 28 25 3 0 0 0
..........................................................................................................................................................ATAGTTGTAATAGTAGTAGTCAG.......................................................................... 23 3 19 1.74 33 18 13 1 0 1
...........................................................................................GAAGTCATAGTTGTTGATT............................................................................................................................................. 19 2 3 1.67 5 0 5 0 0 0
......................................................................................................................................................AGTGATAGTTGTAATAGTAGTAG.............................................................................. 23 2 7 1.57 11 7 3 0 0 1
...........................................................................................................................................................TGGTTGTAATAGTAGTAGTCAG.......................................................................... 22 3 17 1.53 26 10 12 2 0 2
..........................................................................................................................................................ATAGTTGTAATAGTAGTAG.............................................................................. 19 1 18 1.50 27 18 9 0 0 0
.....................................................................................................................................................TAGTGATAGTTGTAATAGTAGTAGT............................................................................. 25 2 5 1.20 6 4 2 0 0 0
.....................................................................................................................................................TAGTGATAGTTGTAATAGTAGTAGTCCG.......................................................................... 28 3 1 1.00 1 1 0 0 0 0
............................................................................................................................................................AGTTGTAATAGTAGTAGTCAGT......................................................................... 22 2 2 1.00 2 1 1 0 0 0
................................................................................................................................................................................................................................ATGGAGTAGGTGAGACGGAGACT.... 23 2 1 1.00 1 0 0 0 1 0
.......................................................................................................................................................GTGATAGTTGTAATAGTAGTA............................................................................... 21 2 20 0.95 19 1 18 0 0 0
.........................................................................................................................................................GATAGTTGTAATAGTAGTAGTCAG.......................................................................... 24 3 3 0.67 2 1 1 0 0 0
.....................................................................................................................................................TAGTGATAGTTGTAATAGTAGTA............................................................................... 23 2 11 0.64 7 4 3 0 0 0
.....................................................................................................................................................TAGTGATAGTTGTAATAGTAGTAGTC............................................................................ 26 3 13 0.62 8 8 0 0 0 0
...........................................................................................................................................................TGGTTGTAATAGTAGTAG.............................................................................. 18 1 20 0.60 12 3 8 1 0 0
..........................................................................................................................................................ATAGTTGTAATAGTAGTAGT............................................................................. 20 1 13 0.54 7 3 4 0 0 0
.............................................................................................................................................................GTTGTAATAGTAGTAGTCAGTA........................................................................ 22 3 17 0.41 7 5 2 0 0 0
............................................................................................................................................................AGTTGTAATAGTAGTAGTCAG.......................................................................... 21 2 10 0.40 4 2 2 0 0 0
.....................................................................................................................................................TAGTGATAGTTGTAATAGTAGT................................................................................ 22 2 14 0.36 5 3 2 0 0 0
.......................................................................................................................................................GTGATAGTTGTAATAGTAGTAG.............................................................................. 22 2 14 0.36 5 0 5 0 0 0
...........................................................................................................................................................TGGTTGTAATAGTAGTAGTCAGT......................................................................... 23 3 3 0.33 1 0 1 0 0 0
..........................................................................................TGAAGTCATAGTTGTTGATT............................................................................................................................................. 20 3 20 0.30 6 2 4 0 0 0
............................................................................................AAGTCATAGTTGTTGATT............................................................................................................................................. 18 2 11 0.27 3 0 2 1 0 0
.......................................................................................................................................................GTGATAGTTGTAATAGTAGTAGTC............................................................................ 24 3 20 0.25 5 0 5 0 0 0
................................................................................................................................................................................................................................ATGGAATTGGTGAGACGGAG....... 20 3 4 0.25 1 0 1 0 0 0
............................................................................................................................................................AGTTGTAATAGTAGTAGTCAGTA........................................................................ 23 3 13 0.23 3 2 1 0 0 0
............GGGTGGACCTATGGTATC............................................................................................................................................................................................................................. 18 3 20 0.20 4 0 4 0 0 0
............................................................................................................................................................AGTTGTAATAGTAGTAGTC............................................................................ 19 1 20 0.20 4 3 1 0 0 0
.................................................................................................................................................................................................................................TCGAGTAGGTGAGACCGAGACA.... 22 3 5 0.20 1 0 0 0 1 0
...................CCTGTGTTAGCGAAGACTG..................................................................................................................................................................................................................... 19 3 6 0.17 1 1 0 0 0 0
.........................................................................................................................................................GATGGTTGTAATAGTAGTAGT............................................................................. 21 2 6 0.17 1 0 1 0 0 0
......................................................................................................................................................AGTGATAGTTGTAATAGTAGT................................................................................ 21 2 18 0.17 3 1 2 0 0 0
........................................................................................................................................................................................................................GGTTGGAGATGGGGCAGGCG............... 20 3 6 0.17 1 1 0 0 0 0
.............................................................................................................................................................CTTGTAATAGTAGTAGTCCGTA........................................................................ 22 3 6 0.17 1 0 0 1 0 0
......................................................................................................................................................AGTGATAGTTGTAATAGTAGTAGTC............................................................................ 25 3 16 0.13 2 2 0 0 0 0
............................................................................................................................................................AGTTGTAATAGTAGTAG.............................................................................. 17 0 8 0.13 1 0 0 1 0 0
..............................................................................................................................................................TTGTAATAGTAGTAGTCAGT......................................................................... 20 2 9 0.11 1 1 0 0 0 0
.......................................................................................................................................................GTGATAGTTGTAATAGTAGT................................................................................ 20 2 20 0.10 2 0 2 0 0 0
...........................................................................................................................................................TAGTTGTAATAGCAGTAGTCAG.......................................................................... 22 3 12 0.08 1 1 0 0 0 0
........................................................................................................................................................TGGTAGTTGTAATAGTAGTA............................................................................... 20 1 12 0.08 1 1 0 0 0 0
.......................................................................................................................................................GTGATAGTTGTAATAGTAGTAGT............................................................................. 23 2 12 0.08 1 0 1 0 0 0
..........................................................................................................................................................CTAGTTGTAATAGTAGTAG.............................................................................. 19 1 13 0.08 1 0 0 0 0 1
......................................................................................................................................................AGTGATAGTTGTAATAGTAGTA............................................................................... 22 2 13 0.08 1 0 1 0 0 0
...........................................................................................GAAGTCATAGTTGTTGAT.............................................................................................................................................. 18 2 14 0.07 1 0 1 0 0 0
.........................................................................................................................................................GATGGTTGTAATAGTAGTA............................................................................... 19 2 17 0.06 1 0 1 0 0 0
.....................................................................................................................................................CAGTGATAGTTGTAATAGTAGTAG.............................................................................. 24 3 19 0.05 1 1 0 0 0 0
...........................................................................................................................................................TAGTTGTAATAGTAGTAGC............................................................................. 19 1 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................TATTTGTAATAGTAGTAGTC............................................................................ 20 2 20 0.05 1 1 0 0 0 0
........................................................................................................................................................TGATACTTGTAATAGTAGTAG.............................................................................. 21 3 20 0.05 1 0 1 0 0 0
................................TGCGGTACTGGGCAGGAA......................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0
...........................................................................................GAAGTCATAGTTGTTGATTT............................................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0
............................................................................................................................................................GGTTGTAATAGTAGTAGTCAG.......................................................................... 21 3 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................TAGTGATAGTTGTAATAGCAGT................................................................................ 22 3 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................GTTGTAATAGCAGTAGTCAG.......................................................................... 20 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:14110383-14110633 - dmo_1148 ATC-TATGA-G------------GCGCCCACCTGGACACA-----------------------------------------------------------------------------------------ATCGC-TAC----------------------------------------------------------------------------------------TCAATGACCAG------TCCTTGTACGTAACATCCAAGGG-----CGTAGGT-------------------------AGCC-GACATGTCGATGCTTCATTATCAACAACAAACACATCCACAACAACAACAA---TAACCACAA---CCACATCAT-------------------------------------CA-------------------------------------------TCTCCATC------AACATTATCATCATCATGCACAACAGCCACCAGCTCTGTCTCG--A-----------------------------------CTCTAGTCTCT---------------AGTCCAGCC---------------------------TCTACCCCATCC---ACT----CTGC--CTC------T---GT-CCAC
droVir3 scaffold_13324:2687212-2687438 + ATC-TATGA-G------------GCGCCCACATGGACACA-----------------------------------------------------------------------------------------ATCGC-TAG----------------------------------------------------------------------------------------TCAATGACCAG------TCCTTGTACGTACCGACG---GG-----CCAAGATGT-TGGT------TCAATGCACAGCAG----ACATGTCGATGCATCAT------------------------------------------------T-------------------------------------------------------ATCATCAACATCAACATCAACATCATTATC-------------------------------------CACCGCGACCACAAACTCTATCTTG--ATAGCT--------------------------------------------------------AGCCCAGCCTCTCCTCCCACAGTATCTACCTC-TGC-----------GCC---TGCC-TCCA--CTT------T---GT-CCAC
droGri2 scaffold_15112:4787403-4787644 - ATC-TATGA-G------------GCGCCAACCTGGACGCA-----------------------------------------------------------------------------------------GGCGC-TAC----------------------------------------------------------------------------------------TCAATGATCAG------TCCTTGTACGTACAGACT---GG-----CGTGGGTGC-TGTTGTTCCATCAATGCACAGCAGCC-AACATGTCGATGCTTCATTATC---------------------------------AAAAT------CATCATCAT-------------------------------------CA-------------------------------------------TCTCCATC------GTCATCATCATCATTGCCTTCATCATACACAAATACTGTCTCA--ACATCG-----------------------------CAGCCAGTCTCT---------------GCTT---CC---------------------------TCTGCCCCC---CC---TGCT-TCCT--CCT------C---CT-CAAA
droWil2 scf2_1100000004822:1728313-1728557 + ATC-TATGA-G------------GCACCACCTCT-ACACA-----------------------------------------------------------------------------------------GTCGCCATTCATCGG----------------------------------------------------------------------------------TCAATGATCAGCCGCCGCCGTTGTATGTATCATCTATG---------------TCTGGT------TCATTGAACACTAG----ACATGTGGCTACTT---------------------------CTGCTACTCCTCCAACAT------CATCATCAT-------------------------------------CA-------------------------------------------TCTTCATTATCAACAC------CATCATC---ATCGATA---GTTACTAC------T--GTCTCCTAC-GCTTCCTCTACT------------A-------ACCCAACACCAACATCAACTAC------------------------------------------TACT---ACT----ACTA--CTT------C---CA-TTAC
dp5 3:9876147-9876308 + ATC-TACGA-A------------GCGCCCCACCAACAA-----------------------------------------------------------------------------------------C---AC-CAGCGATCCG----------------------------------------------------------------------------------TCCAGGATCAG------TCGTTGTATGTACAGCCA---C-------------------------------------------------------------------------------------------------CAACAGCCACATCT-------GCCCCAGTTGCAGCACACACGATAGCCACTCTATCCACATCCACA------------------------TCCCATTCCAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------TTC---G---T---------CCTCCTCCTCGTCGTCG
droPer2 scaffold_4:5193960-5194145 + ATC-TACGA-A------------GCGCCCCACCAACAA-----------------------------------------------------------------------------------------C---AC-CAGCGATCCG----------------------------------------------------------------------------------TCCAGGATCAG------TCGTTGTATGTACAGCCA---C-------------------------------------------------------------------------------------------------CATCAGCCACAGCT-------GCCCCAGTTGCAGCACACACGATAGCCACTCCATCCACATCCACATCAGCATCAGCATCAGCATCAACCTCCCATTCCAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------TTC---G---T---------CCTCCTCCTCGTCGTCG
droAna3 scaffold_13266:11513616-11513824 - ATC-TACGA-G------------GCCCCCAGCCAGAGGGC-----------------------------------------------------------------------------------------GCAGC-CGG----------------------------------------------------------------------------------------CCCAGGATCAG------TTGTTGTATGTAGCCCTGAAGGGAAGCCCGGCGGC-------------------------AGAGAGGGCCGCCAACGTCTCCT----------------------------------------------------------CATCCAGT---------------ACTAGCTCATCC---------------------------------TCA----------TCTTCCTCT-----GTGATTTTCTCCACACTGC---------GCAAGTGC-GTCTCC--CCCTCG-----------------------------AATCCGATCGAG---------------AGCC--------------------------------------------CC-AA---A-GTTC--CGC------C---CT-CCAA
droBip1 scf7180000395895:56250-56451 + AGT-CTAGT-G----------TATGGCTATCCCAGCTATCGCCGCCACTCGCAGCCACAGTTGCATCCGCAGCCGTTGTC-GCCGCATCGCTACCAGGCCAGTGTCCTGCCGCCGCCACTGCAATCCC---AGC-AAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------C-------------------------------------------------------AACAACAACAACAACAACAACATCATCATCCAGCG--------------------------------------------------------------------------------------------------------CATCAG------------------------CAACATCCGCAT---CCGC-ATC-----------AGC---A---A---------CATCCGCACCA----GC
droKik1 scf7180000302698:608627-608849 + ACC-GCGCA-G------------CAGCAACTGCATACG-------------------------------CAGCAGCATCA-GCAGCAA---------------------------------------C---AT-GTGTCAGCCG----------------------------------------------------------------------------------CCCAGCAGCAG------TTGCAACATCAA-----------------------------------------------------------------------------------------------------------CAACAG------C-------------------------------------------------------AACAGCAGCAGCAGCAGCAG----------------CATCTGCAGCAGCAG------CAGCAGC---ATCAGCA---GGTGCAGC------ATAGTCACCACCAGCAG------CAACAACATGCTGCC-------CAGCAGC---ATCAGCAGCAGCTG---CA---------TCATGAT----------C-----------CCC---A----GCAG--CAG------C---AG-CAAC
droFic1 scf7180000454044:854624-854785 + ATC-TATGA-G------------GCACCTCAGCGATCT-----------------------------------------------------------------------------------------C---AGC-AGCAGC----------------------------------------------------------------------------------AGCAGCAGGATCAG------ATGTTGTATGTACCAACA---G-------------------------------------------------------------------------------------------------GGACTCAAAGAGACTCACCA-TCATCCAGTGCAGCCACATCGATAGCCAGTTCATCTT----------------------------------------------------------------------------------------------------------------------------CC----------------------------------------------------ACCCTAACTTCAT----------C-----------CCC---A---T---------CCTCCTCTTCTTCTCTG
droEle1 scf7180000491152:108950-109132 + ATC-TATGA-G------------GCACCTCAGAGATCT---CAGCCGC-----------------------------------------------------------------------------AGC-------AG---------------------C-------------------------------------------AACAGCAGCAACAGCAGCAGCAGCAGCAGGATCAG------ATGTTGTATGTACCGACA---G-------------------------------------------------------------------------------------------------CAACTGAAAGAGAT-------ACATCAAGTGCAGCCTCATCGATAGCCAGTTCATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAACTCTCT---CCCC-ATC-----------CCC---A---T---------CCTCTCCATCTTCTCTG
droRho1 scf7180000780293:208080-208297 - AGC-GAGGA-TCCCATACTGAA-GATTCCGTCCTTCAA-----------------------------------------------------------------------------------------G---GT-CAGTGGTCCGGCCAGCAGCAGCAGCCTGTCGCCGGGCGGACCGCTGGGTGGTGGTC---------------------------------ACCACCATCATCA--------TCCGCTGAATAACAACA---A-------------------------------------------------------------------------------------------------CAACAGCAACAGCC-------TCAGCATCAGCAACAACATCGGCAGCAGCAGCAGCAA----------------------------------------------------------------------------------CAGTCACCGGA------ACG--GCAGCA--------------------------------------------------------ATCGCA---------------------------GTC-----------CCC---A---T--------TCC---------G-CCTC
droBia1 scf7180000301754:622138-622350 - ACT-TTG-A-G------------T--CCAACCCGGCAGCA-------------------GGTGCCTAT-CAGCAG----------------------------------------------------C---AT-CAACTGATCA-------------------------------------------GTCAGTATCAGCAAC---------------AGCAGCAGCAACAACAACAA------CAGCAGCAG--------------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------ACAACAACAACAA----------------------CAACAGCAGCAGCAG------CAGCAAC---AACAGCA---ACAGCC------ACA--GCAGCAA-------------CAACATCATCTTGCC-------CAACAGCAGCAGCACATGAGGA---------------------------------------------GTCACA---C-GCCC--CAG------A---GT-CCAC
droTak1 scf7180000415991:559085-559240 + ATC-TATGA-G------------GCGCCTCAGAGAGCT-----------------------------------------------------------------------------------------C---AGC-AGC-------------------------------------------------------------------------------AGCAGCAGCAGCAGGATCAG------ATGTTGTATGTACCGACA---G-------------------------------------------------------------------------------------------------GAACCCAAAGAGAT-------TCATCCAGTGCAGCCACATCGATAGCCAGTTCATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTCACTTCAT----------C-----------CCC---A---T---------CTTCCCCATCTTCTCTG
droEug1 scf7180000409663:265004-265153 - ATC-TATGA-G------------GCGCCTCAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAA------ATGTTGTATGTACCAACA---G-------------------------------------------------------------------------------------------------CAGCTCAAAGAGAT-------TCATCAAGTGCAGCCACATCGATAGCCAGTTCATCTA----------------------------------------------------------------------------------------------------------------------------CT----------------------------------------------------ACCCTAACTTCAT----------C-----------CCC---A---T---------CCTCCTCATCTTCTCTG
dm3 chr2R:15043373-15043531 + ATC-TATGA-G------------GCACCACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTTGTATGTACCAACG---G-------------------------------------------------------------------------------------------------CAGCGCAAAGAGATTCATCA-TCAAGTGCTGCAGCCACATCTATAGCCAGCTCATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAACTTCAT---CCCC-ATC-----------GCC---A---T---------CCTCCTCTTCATCTCTG
droSim2 2r:15693842-15693997 + ATC-TATGA-G------------GCACCACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTTGTATGTACCAACG---G-------------------------------------------------------------------------------------------------CAACGCTAAGAGATTCA----TCATCAAGTGCAGCCACATCGATAACCAGCTCATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAACTTCAT---CCCC-GTC-----------CCC---A---T---------CCTCCTCTTCATCTCTG
droSec2 scaffold_15:1292674-1292851 + ACGCGGCTA-CTACGCACTGAA--------------------------------------------------CGGCAGCTTGGAGCTA----------------------------GATTGCGACACC-------AG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAC------G-------------------------------------------------------AACAGCAGCAGCAGCAGCAACAACATTGGCTAC---CAACAACACCAGCAG------CAGCAGC---AACAGCA---ACCGCC-------------------------------------------------------------------------------GTTGATCCTGTCGCAGGCTCTGCTGTC---GCCATCTCC-------------GCCGCTCAA------C---GA-TCAG
droYak3 X:1068786-1068964 - CGG-CATGGCCCAGTCGCATTAATGTCCACATCCACAT-----------------------------------------------------------------------------------------C---CAT-AGC-------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------A---------------------------CAGCCACAGCCACAT---------CC-------------------------------------------------------ACATCCACATCCA----------------------CATCCACATCCACAT------CCACATC---CACATCC---ACATCCAC------A--TCCACATCC-ACATCCACATCC------------A-------CATCCACATCCACATCCACATC------------------------------------------CACA---TCC----ACAT--CCA------C---GT-CCAC
droEre2 scaffold_4845:9243317-9243466 + ATC-TACGA-G------------GCACCGCAGAGATCT-----------------------------------------------------------------------------------------CAGCAGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTTGTATGTACCAACG---G-------------------------------------------------------------------------------------------------CAACTCAAAGAGAT-------TCACCAAGTGCAGCCACATCGATAGCCAGTTCATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAACTTCGT----------C-----------CCC---A---T---------CCTCCTCTTCATCTCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATC-TATGA-G------------GCGCCCACCTGGACACA-----------------------------------------------------------------------------------------ATCGC-TAC----------------------------------------------------------------------------------------TCAATGACCAG------TCCTTGTACGTAACATCCAAGGG-----CGTAGGT-------------------------AGCC-GACATGTCGATGCTTCATTATCAACAACAAACACATCCACAACAACAACAA---TAACCACAA---CCACATCAT-------------------------------------CA-------------------------------------------TCTCCATC------AACATTATCATCATCATGCACAACAGCCACCAGCTCTGTCTCG--A-----------------------------------CTCTAGTCTCT---------------AGTCCAGCC---------------------------TCTACCCCATCC---ACT----CTGC--CTC------T---GT-CCACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC------AACATTATCATCATCATG.............................................................................................................................................................................2111.001001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC------AACATTATCATCATCA...............................................................................................................................................................................1970.141100000
droVir3
ATC-TATGA-G------------GCGCCCACATGGACACA-----------------------------------------------------------------------------------------ATCGC-TAG----------------------------------------------------------------------------------------TCAATGACCAG------TCCTTGTACGTACCGACG---GG-----CCAAGATGT-TGGT------TCAATGCACAGCAG----ACATGTCGATGCATCAT------------------------------------------------T-------------------------------------------------------ATCATCAACATCAACATCAACATCATTATC-------------------------------------CACCGCGACCACAAACTCTATCTTG--ATAGCT--------------------------------------------------------AGCCCAGCCTCTCCTCCCACAGTATCTACCTC-TGC-----------GCC---TGCC-TCCA--CTT------T---GT-CCACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
ATC-TATGA-G------------GCGCCAACCTGGACGCA-----------------------------------------------------------------------------------------GGCGC-TAC----------------------------------------------------------------------------------------TCAATGATCAG------TCCTTGTACGTACAGACT---GG-----CGTGGGTGC-TGTTGTTCCATCAATGCACAGCAGCC-AACATGTCGATGCTTCATTATC---------------------------------AAAAT------CATCATCAT-------------------------------------CA-------------------------------------------TCTCCATC------GTCATCATCATCATTGCCTTCATCATACACAAATACTGTCTCA--ACATCG-----------------------------CAGCCAGTCTCT---------------GCTT---CC---------------------------TCTGCCCCC---CC---TGCT-TCCT--CCT------C---CT-CAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATC-TATGA-G------------GCACCACCTCT-ACACA-----------------------------------------------------------------------------------------GTCGCCATTCATCGG----------------------------------------------------------------------------------TCAATGATCAGCCGCCGCCGTTGTATGTATCATCTATG---------------TCTGGT------TCATTGAACACTAG----ACATGTGGCTACTT---------------------------CTGCTACTCCTCCAACAT------CATCATCAT-------------------------------------CA-------------------------------------------TCTTCATTATCAACAC------CATCATC---ATCGATA---GTTACTAC------T--GTCTCCTAC-GCTTCCTCTACT------------A-------ACCCAACACCAACATCAACTAC------------------------------------------TACT---ACT----ACTA--CTT------C---CA-TTACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
ATC-TACGA-A------------GCGCCCCACCAACAA-----------------------------------------------------------------------------------------C---AC-CAGCGATCCG----------------------------------------------------------------------------------TCCAGGATCAG------TCGTTGTATGTACAGCCA---C-------------------------------------------------------------------------------------------------CAACAGCCACATCT-------GCCCCAGTTGCAGCACACACGATAGCCACTCTATCCACATCCACA------------------------TCCCATTCCAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------TTC---G---T---------CCTCCTCCTCGTCGTCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATC-TACGA-A------------GCGCCCCACCAACAA-----------------------------------------------------------------------------------------C---AC-CAGCGATCCG----------------------------------------------------------------------------------TCCAGGATCAG------TCGTTGTATGTACAGCCA---C-------------------------------------------------------------------------------------------------CATCAGCCACAGCT-------GCCCCAGTTGCAGCACACACGATAGCCACTCCATCCACATCCACATCAGCATCAGCATCAGCATCAACCTCCCATTCCAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------TTC---G---T---------CCTCCTCCTCGTCGTCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACATCAGCATCAGCATCAGC.................................................................................................................................................................................................................................2430.331010000
droAna3
ATC-TACGA-G------------GCCCCCAGCCAGAGGGC-----------------------------------------------------------------------------------------GCAGC-CGG----------------------------------------------------------------------------------------CCCAGGATCAG------TTGTTGTATGTAGCCCTGAAGGGAAGCCCGGCGGC-------------------------AGAGAGGGCCGCCAACGTCTCCT----------------------------------------------------------CATCCAGT---------------ACTAGCTCATCC---------------------------------TCA----------TCTTCCTCT-----GTGATTTTCTCCACACTGC---------GCAAGTGC-GTCTCC--CCCTCG-----------------------------AATCCGATCGAG---------------AGCC--------------------------------------------CC-AA---A-GTTC--CGC------C---CT-CCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AGT-CTAGT-G----------TATGGCTATCCCAGCTATCGCCGCCACTCGCAGCCACAGTTGCATCCGCAGCCGTTGTC-GCCGCATCGCTACCAGGCCAGTGTCCTGCCGCCGCCACTGCAATCCC---AGC-AAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------C-------------------------------------------------------AACAACAACAACAACAACAACATCATCATCCAGCG--------------------------------------------------------------------------------------------------------CATCAG------------------------CAACATCCGCAT---CCGC-ATC-----------AGC---A---A---------CATCCGCACCA----GCSizeHit CountTotal NormTotal
No Reads
droKik1
ACC-GCGCA-G------------CAGCAACTGCATACG-------------------------------CAGCAGCATCA-GCAGCAA---------------------------------------C---AT-GTGTCAGCCG----------------------------------------------------------------------------------CCCAGCAGCAG------TTGCAACATCAA-----------------------------------------------------------------------------------------------------------CAACAG------C-------------------------------------------------------AACAGCAGCAGCAGCAGCAG----------------CATCTGCAGCAGCAG------CAGCAGC---ATCAGCA---GGTGCAGC------ATAGTCACCACCAGCAG------CAACAACATGCTGCC-------CAGCAGC---ATCAGCAGCAGCTG---CA---------TCATGAT----------C-----------CCC---A----GCAG--CAG------C---AG-CAACSizeHit CountTotal NormTotal
No Reads
droFic1
ATC-TATGA-G------------GCACCTCAGCGATCT-----------------------------------------------------------------------------------------C---AGC-AGCAGC----------------------------------------------------------------------------------AGCAGCAGGATCAG------ATGTTGTATGTACCAACA---G-------------------------------------------------------------------------------------------------GGACTCAAAGAGACTCACCA-TCATCCAGTGCAGCCACATCGATAGCCAGTTCATCTT----------------------------------------------------------------------------------------------------------------------------CC----------------------------------------------------ACCCTAACTTCAT----------C-----------CCC---A---T---------CCTCCTCTTCTTCTCTGSizeHit CountTotal NormTotal
No Reads
droEle1
ATC-TATGA-G------------GCACCTCAGAGATCT---CAGCCGC-----------------------------------------------------------------------------AGC-------AG---------------------C-------------------------------------------AACAGCAGCAACAGCAGCAGCAGCAGCAGGATCAG------ATGTTGTATGTACCGACA---G-------------------------------------------------------------------------------------------------CAACTGAAAGAGAT-------ACATCAAGTGCAGCCTCATCGATAGCCAGTTCATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAACTCTCT---CCCC-ATC-----------CCC---A---T---------CCTCTCCATCTTCTCTGSizeHit CountTotal NormTotal
No Reads
droRho1
AGC-GAGGA-TCCCATACTGAA-GATTCCGTCCTTCAA-----------------------------------------------------------------------------------------G---GT-CAGTGGTCCGGCCAGCAGCAGCAGCCTGTCGCCGGGCGGACCGCTGGGTGGTGGTC---------------------------------ACCACCATCATCA--------TCCGCTGAATAACAACA---A-------------------------------------------------------------------------------------------------CAACAGCAACAGCC-------TCAGCATCAGCAACAACATCGGCAGCAGCAGCAGCAA----------------------------------------------------------------------------------CAGTCACCGGA------ACG--GCAGCA--------------------------------------------------------ATCGCA---------------------------GTC-----------CCC---A---T--------TCC---------G-CCTCSizeHit CountTotal NormTotal
No Reads
droBia1
ACT-TTG-A-G------------T--CCAACCCGGCAGCA-------------------GGTGCCTAT-CAGCAG----------------------------------------------------C---AT-CAACTGATCA-------------------------------------------GTCAGTATCAGCAAC---------------AGCAGCAGCAACAACAACAA------CAGCAGCAG--------------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------ACAACAACAACAA----------------------CAACAGCAGCAGCAG------CAGCAAC---AACAGCA---ACAGCC------ACA--GCAGCAA-------------CAACATCATCTTGCC-------CAACAGCAGCAGCACATGAGGA---------------------------------------------GTCACA---C-GCCC--CAG------A---GT-CCACSizeHit CountTotal NormTotal
No Reads
droTak1
ATC-TATGA-G------------GCGCCTCAGAGAGCT-----------------------------------------------------------------------------------------C---AGC-AGC-------------------------------------------------------------------------------AGCAGCAGCAGCAGGATCAG------ATGTTGTATGTACCGACA---G-------------------------------------------------------------------------------------------------GAACCCAAAGAGAT-------TCATCCAGTGCAGCCACATCGATAGCCAGTTCATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTCACTTCAT----------C-----------CCC---A---T---------CTTCCCCATCTTCTCTGSizeHit CountTotal NormTotal
No Reads
droEug1
ATC-TATGA-G------------GCGCCTCAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAA------ATGTTGTATGTACCAACA---G-------------------------------------------------------------------------------------------------CAGCTCAAAGAGAT-------TCATCAAGTGCAGCCACATCGATAGCCAGTTCATCTA----------------------------------------------------------------------------------------------------------------------------CT----------------------------------------------------ACCCTAACTTCAT----------C-----------CCC---A---T---------CCTCCTCATCTTCTCTGSizeHit CountTotal NormTotal
No Reads
dm3
ATC-TATGA-G------------GCACCACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTTGTATGTACCAACG---G-------------------------------------------------------------------------------------------------CAGCGCAAAGAGATTCATCA-TCAAGTGCTGCAGCCACATCTATAGCCAGCTCATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAACTTCAT---CCCC-ATC-----------GCC---A---T---------CCTCCTCTTCATCTCTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................ACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GATTCATCA-TCAAGTGCTGC....................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................GC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................AGC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAACTTCAT---CCCC-AT.................................................2411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........G------------GCACCACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................CACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------AGCAGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................AGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................GC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------AT.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................GCACCACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....ATGA-G------------GCACCACAGAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................GCACCACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................GCAGGATCAG------ATGTTGTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................ACCACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................CCACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................CAG------ATGTTGTATGTACCAACG---G-------------------------------------------------------------------------------------------------CAGCGC..............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................TCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................................................................................................GATTCATCA-TCAAGTGCTGCAGC.................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------ATG........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................C---AGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------...........................................................................................................................................................................................................................................................................................................................................................................................................................................1860.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................GC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................AGCAGGATCAG------ATGTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................18120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
ATC-TATGA-G------------GCACCACAGAGATCT-----------------------------------------------------------------------------------------C---AGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTTGTATGTACCAACG---G-------------------------------------------------------------------------------------------------CAACGCTAAGAGATTCA----TCATCAAGTGCAGCCACATCGATAACCAGCTCATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAACTTCAT---CCCC-GTC-----------CCC---A---T---------CCTCCTCTTCATCTCTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ACGCGGCTA-CTACGCACTGAA--------------------------------------------------CGGCAGCTTGGAGCTA----------------------------GATTGCGACACC-------AG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAC------G-------------------------------------------------------AACAGCAGCAGCAGCAGCAACAACATTGGCTAC---CAACAACACCAGCAG------CAGCAGC---AACAGCA---ACCGCC-------------------------------------------------------------------------------GTTGATCCTGTCGCAGGCTCTGCTGTC---GCCATCTCC-------------GCCGCTCAA------C---GA-TCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACCAGCAG------CAGCAGC---AACAGC.......................................................................................................................................................................2450.2010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CAGCAGC---AACAGCA---ACC................................................................................................................................................................1960.1710001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAAC...........................................................................................................................................................................................................................21200.0510010
droYak3
CGG-CATGGCCCAGTCGCATTAATGTCCACATCCACAT-----------------------------------------------------------------------------------------C---CAT-AGC-------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------A---------------------------CAGCCACAGCCACAT---------CC-------------------------------------------------------ACATCCACATCCA----------------------CATCCACATCCACAT------CCACATC---CACATCC---ACATCCAC------A--TCCACATCC-ACATCCACATCC------------A-------CATCCACATCCACATCCACATC------------------------------------------CACA---TCC----ACAT--CCA------C---GT-CCACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC------------A-------CATCCACATCCACATCCACATC------------------------------------------........................................26200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-ACATCCACATCC------------A-------CATCCACATC..............................................................................................26200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC---ACATCCAC------A--TCCACATCC-ACATC...................................................................................................................................26200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACATCC-ACATCCACATCC------------A-------CATC....................................................................................................26200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACATCC------------A-------CATCCACATCCACATC........................................................................................26200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACATCCACATCCACATC------------------------------------------CACA---TC...............................26200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---CACATCC---ACATCCAC------A--TCCACATC..........................................................................................................................................26200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAC------A--TCCACATCC-ACATCCACATC.............................................................................................................................26200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACATCCACATC------------------------------------------CACA---TCC----ACAT--C...................26200.05101000000000
droEre2
ATC-TACGA-G------------GCACCGCAGAGATCT-----------------------------------------------------------------------------------------CAGCAGC-AGC----------------------------------------------------------------------------------------AGCAGGATCAG------ATGTTGTATGTACCAACG---G-------------------------------------------------------------------------------------------------CAACTCAAAGAGAT-------TCACCAAGTGCAGCCACATCGATAGCCAGTTCATCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAACTTCGT----------C-----------CCC---A---T---------CCTCCTCTTCATCTCTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:46 PM