ID:

dmo_1146

 Coordinate:

scaffold_6496:14092612-14092762 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dmoj_GLEANR_3850:6]; CDS [Dmoj\GI18914-cds]; intron [Dmoj\GI18914-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------###############################-------------------
GAAAAAAAAATGTTCAAAGTTCTATAAATAGACATGGCTATACACAGAGATCGCAGCAGAGCAGATCCCCGAGCCAGTGGCGCTTGTTGTTGCAATACACATACACACAAACACACACACACACACTTAGATACACCTAAATATACTGTTATATATGGGCCAACTGTTTCGAATTACTAACTAATCCAATTCGAATTTCAGACTTTGTTGCCATTATGATGCTGCTGTCTGATCGCTGGACCTGCACCATG
**************************************************..((((((((((..........(((...)))))))..))))))..........................................((((.(((((....))))).))))....(((.((((((((............))))))))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
.......................................ATCCACAGAGTTCGCACCA................................................................................................................................................................................................. 19 3 20 2.05 41 37 4
.....................................CTATCCACAGAGTTCGCACCA................................................................................................................................................................................................. 21 3 1 2.00 2 2 0
.......................................................................................................................................................................................................................ATGATGCTGCTGTCTGATC................. 19 0 1 1.00 1 1 0
...........................................................................................................................................................................................................................TGCTGCTGTCTGATCGCTG............. 19 0 1 1.00 1 0 1
.....................................CTATCCACAGAGTTCGCA.................................................................................................................................................................................................... 18 2 3 0.33 1 1 0
........................................................................GACAGTGGCGCTAGTTGGT................................................................................................................................................................ 19 3 20 0.05 1 1 0

Anti-sense strand reads

CTTTTTTTTTACAAGTTTCAAGATATTTATCTGTACCGATATGTGTCTCTAGCGTCGTCTCGTCTAGGGGCTCGGTCACCGCGAACAACAACGTTATGTGTATGTGTGTTTGTGTGTGTGTGTGTGAATCTATGTGGATTTATATGACAATATATACCCGGTTGACAAAGCTTAATGATTGATTAGGTTAAGCTTAAAGTCTGAAACAACGGTAATACTACGACGACAGACTAGCGACCTGGACGTGGTAC
**************************************************..((((((((((..........(((...)))))))..))))))..........................................((((.(((((....))))).))))....(((.((((((((............))))))))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body
.............................................................................................................................................................................................................................GACGACAGACTAGCGACCT........... 19 0 1 1.00 1 1
........................................................GTCCCGTCTAGGGGCATGG................................................................................................................................................................................ 19 3 6 0.17 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:14092562-14092812 - dmo_1146 GA--------AA-AAAAAA-------TGTTCAAA--------------------------------------------------------------GTTCTATAAATAGACA------TGGCT----------ATA---CA-CAGA-----GATCGCAG---CAGAGCAGATCCCCGAG-CCAGTGGCGC-------TTG--TTGTTGCAATACACATAC--------------------------------------------------------------------------------------------------------ACACAA----------------------------ACACACA-CAC-ACAC----ACTTAGA--------------TACACCT---------------------------------------------------------------------------------------------AAAT-ATACTGTTATATATGGGCCA-ACTGTTTCGAA-----TTACTAACTAA---TCCAA-------------TTCGAATTTCAGACTTTGTTGCCATTATGATGCTGCTGTCTGATCGCTGGACCTGCACCAT------G
droVir3 scaffold_13324:2701676-2701905 + GA--------AA-AA---TTTAAA--AAAAAAG---------------------------------------------------------------AATCTATAAATAGGCA------C---------------GG----------------------------------------------------GTCTTTTCATGG--CTGCCC----ATAGAGATCTCAGAGATC-TGAG-----AGCTCCCAG--------------------------------------------AGCCAGTGGTGC-TACG-T--TGTTGTAGATACCGA-CTA-TATGT-TTCGA--TA------TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTCGAAGTTGCAACTCATTCCGT--GATTGTTCCGATTTGCAGGCTTAACTGGGATTTTAATGATGCTGACCGCCCCGTGGATCGTCGCCAT------G
droGri2 scaffold_15112:4770518-4770769 - GA--------AC-AAATATT------TTTTTAAA--------------------------------------------------------------TATCTATAAATAGACG------T---------------GGGACTT-CT---GTTGGCCGAG---AG------AGATCCCCGAGCCATACACAGATTTTGACTGC--TTACACAGACAC--------------------------------------------------------------------------------------------------------------ACACAA----------------------------CCACACA-CAC-A-----------ACATACACACA----CTTACACGT---------------------------------------------------------------------------------------------AAAT-G---TGGCCTATATGTGCCAAACTGTTTCGATATCATTTTCGAAGTTA---TTCACTGGGTTTAACTGTTTCCACTTTCAGTC--CGGCACGATTATAATGATGATGT-------------TGTAATGAT------G
droWil2 scf2_1100000004822:1754221-1754463 + AA--------AA-AT---G-------TTCATAATTTTTGCCAGAGAAAAT----------------------------------------------TTGCTATAAATAGACT------T---------------GG----------------------------------------------------G--------GGG--CTACACATACAC--------------------------------------------------------------------------------------------------------------ATAGAA----------------------------GGAAATA-TAT-ATAC----AAAGAGA--------------TATATGTATATATATCGGAAGATCTCTCTCTTTTTCCTTGTTTCTCTCTCAGTTTGTCTAATAATTGTCTCTCTTTTTGACTGTTTTGCAGCATTCAACAAAAAA----------AAAT-------------------------------------------------------------------ATA---------TCAAAATAATGATGATTCCTTGCTGGAATTTGATTTC------T
dp5 XL_group3a:391218-391368 - AC--------AC-ACGCAC---ACACACACACG-----------------CACTCACACACACACACACAAGTCCTTTCAGAGGAGGACCGCATTGTTATTTAGTTTAGAAT------GAAAT----------GAA---AT-TG-------AATGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------ACGCCACTGCAATCGGAAT-CG-GCGCTTCGATATTGGACTTTCATTGC------A
droPer2 scaffold_4:5209133-5209397 + TC--------AT-GAAAAT-------TGTTCGA---------------------------------------------------------------GTTCTATAAATAGACACGCCCAGCGGT----------GGG---GC-TGC-----GGGTAGGAAGG----------------GAGGGATGGGAGGTCTTTCATGG--CA-------TACAGAAACC--A----------------AGACATCTCTCATCTGTTGCTCTCTCTCTCTATCTCTGTCTGTGGCACATACCACGAGT-ACTCT-GGCTCT--CGTATAATACAACTA-TTTGTCTGT-CTGAT--CT------TCGGCAGAAC-AC-CG---------ACTAC--------GACG------A--------------------------------------------------------------------------------------------------------------------------------------------TGAT----------------------------GAACCAACGCCTGGACCT----------------------CGGCTGGAACTCGACCGT------C
droAna3 scaffold_13117:4482647-4482691 - CA--------CA-CACACA-------CACACAC---------------------------------------------------------------ACACACACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACA--------------CACA------------------------------------------------------------------------------------------------AAAC----------------------------------------------------------------------------------ACACT---------------------------------------------------
droBip1 scf7180000396547:967076-967265 + AGCTTCCCAAAT-GAAAATC------TGAACAG---------------------------------------------------------------ATTCTATAAATAGAGC------G---------------GG---GA-CTG-----GGGCAGGAACT-----------------TGGGGGTTGGG---------GGCTCTGCCCCGATACAGAAAATCATCTCG--------------------------------------------------------------------------------CT-C--TCTGAGATACACGAAACTA-TAAGA-TAC-T--TT------CCCACAGACC-GA-CACTC----CGACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGACGTT-------------------------GATCCGTGGGATTACCTC-------------------------------------G---------
droKik1 scf7180000302300:93019-93095 - TT--------GT-AATAAC-------TTTACAC---------------------------------------------------------------AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC----------------------------ACACACA-CAC-ACTC----ACTTAGT--------AGTG------TT-----------------------------------------------------------------------------------------CAACTAAATTGTATTGTTTTATAT-------------------------------------------------------------------ATACC---------------------------------------------------
droFic1 scf7180000454044:870373-870579 + AA--------A--GAAAAT-------TGTACAA---------------------------------------------------------------GTTCTATAATTAGAAT------GCGTT----------GAG---GA-TG-------GGGCTT---T-----------------GGGGGATGTAGATCTTTAATGG--CTGCCTCGATACACAAAATCCTCTCACCCTCT------A-AAATCTC--------------------------------------------GGAGAA-TCGTT-CGCC-G--AATGAGAAGCACCCA-CTA-TATGAACTATA--TT------CCCGCAGAAC-GA-CA---------ATGAT--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------G---------
droEle1 scf7180000491009:79982-80208 - CA--------AAAGAAAAT-------TGTACAA---------------------------------------------------------------GTTCTATAATTAGATA------GCGAT----------GAG---GA-TG---TTGGGACAGC---AGGGGAAACGG--GGGGAAGGGAAGGGAGATCTTTCATGG--CTGCCCCGATACACAAAATCCACTCGCC-TCA------ACCCATCGC--------------------------------------------GGAGAT-TCTCT-CGCC-A--AGTGAGAAACACCCA-CTA-AAAGA-CTCTA--TT------CCCGCAGAAC-GA-CC---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------G---------
droRho1 scf7180000777217:293908-293959 + AC--------AC-AC-ACT-------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAG----------------------------GTACACA-TAC-ACACATTCAGTTACA--------AAGATACA--GC-----------------------------------------------------------------------------------------C----AT--------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301506:1312487-1312530 - AC--------AC-AC-ACA-------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAC----------------------------ACACACA-CAC-ACAC----TCACAAC--------TACG------CC-----------------------------------------------------------------------------------------C----AA--------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415386:176138-176346 + AA--------A--GAAAAT-------TGTACAA---------------------------------------------------------------GTTCTTAAAATAGAAT------GCGAT----------GAG---GA-TG-------GGTAGCAAGA-----------------GGGGGATTTAGATCTTTAATGG--CTGCCCCGATACACAAATTCCTCTCATC-TCA------ACCCATCTC--------------------------------------------GGAGAT-GCTCT-CGCC-C--GCTGAGAAACACCCA-CTA-AAAGA-CTCTA--TT------CCCGCAGAAC-GA-CA---------ACGAT--------GATG------C--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------G---------
droEug1 scf7180000409663:247890-248117 - AA--------A--GAAAAT-------TGTACAA---------------------------------------------------------------GTTCTATAATTAGAAT------GTGCTGAGCATGAAAGGG---GAGTGGAGATTGAGAAG----C----------------GGGGGACTTTAGATCTTTCATGG--CTGCCCCGATACACAAATTTCTCTCATC-CCAA-----AACCATCTC--------------------------------------------AGCGATTTCTCT-CGCC-C--GATGAGAAACACCCA-CTATAATGA-CTATA--TT------CCCGCAGAACCGA-CA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------G---------
dm3 chr2R:15057951-15058171 + CA--------AA-GAAAAT-------TGTACAA---------------------------------------------------------------ATTCTATAAATAGAAT------ACGAC----------AGA---GA-CG---TTTGGGCAGG---AG----------------GGGGGATTAAGATCTTTCATGG--CTGCCCCGATACACAAATTCCTCTCATC-TCA------ACCCATTAC--------------------------------------------GGAGAT-ACTCT-CGCC-A--GATGAGAAACACCCA-CTA-AAAGA-CTCTA--TT------CCCGCAGAAC-GA-TA---------ATGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGCCTGGAAC
droSim2 2r:15708145-15708367 + dsi_30076 CA--------AA-GAAAAT-------TGTACAA---------------------------------------------------------------ATTCTATAAATAGAAT------ACGAC----------GGG---GA-CGGAGGTTGGGAAGG---A-----------------GGGGGATTAAGATCTTTCATGG--CTGCCCCGATACACAAATTCCTCTCATC-TCA------ACCCATTTC--------------------------------------------GGAGAT-ACTCT-CGCC-A--GATGAGAAACACCCA-CTA-AACGA-CTCTA--TT------CCCGCAGTAC-GA-TA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGCCTGGAAC
droSec2 scaffold_1:12570697-12570913 + CA--------AA-GAAAAT-------TGTACAA---------------------------------------------------------------ATTCTATAAATAGAAT------ACG-------------GG---GA-CG---GTTGGGGAGG---A-----------------GGGGGATTAAGATCTTTCATGG--CTGCCACGATACACAAATTCCTCTCATC-TCA------ACCCATTTC--------------------------------------------GGAGAT-ACTCT-CGCC-A--GATGAGAAACACCTA-CTA-AACGA-CTCTA--TT------CCCGCAGAAC-GA-TA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGCCTGGAAC
droYak3 2R:14121247-14121481 - AA--------AA-GAAAAT-------TGTACAA---------------------------------------------------------------ATTCTATAAATAGAAT------GCGAC----------GGC---GA-CG---GTTGGTTAGG---AGGA---------GGAGGAGGGGATTAAGATCTTTCATGG--CTGCCCCGATACACAAATTCCTCTCATC-ACAC----AACCCATTTC--------------------------------------------GGAGAT-GCTCTCCGCC-AGAGAAGAGAAACACCCA-CTA-AAAGA-CTCTATATTCCCATGCCCGCAGAAC-GA-TA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GAACTGTGGGATTAACAC-------------------------------------CGC------C
droEre2 scaffold_4845:9258016-9258232 + AA--------AA-GAAAAT-------TGTACAA---------------------------------------------------------------ACTCTATAAATAGAAT------ACGAC----------GGG---GA-CG---GTTGGCTAGC---A-----------------GGGGGATTAAGATCTTTCATGG--CTGCCCCGATACACAAATTGCTCTCATC-TCAACCTCATCCCATTTC--------------------------------------------GGAGAT-ACTCT-CGCC-A--GATGAGAAACACCCA-CTA-AAAGA-CTCTA--TT------CCCGCAGAAC-GA-TA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACGC-------------------------------------G---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GA--------AA-AAAAAA-------TGTTCAAA--------------------------------------------------------------GTTCTATAAATAGACA------TGGCT----------ATA---CA-CAGA-----GATCGCAG---CAGAGCAGATCCCCGAG-CCAGTGGCGC-------TTG--TTGTTGCAATACACATAC--------------------------------------------------------------------------------------------------------ACACAA----------------------------ACACACA-CAC-ACAC----ACTTAGA--------------TACACCT---------------------------------------------------------------------------------------------AAAT-ATACTGTTATATATGGGCCA-ACTGTTTCGAA-----TTACTAACTAA---TCCAA-------------TTCGAATTTCAGACTTTGTTGCCATTATGATGCTGCTGTCTGATCGCTGGACCTGCACCAT------GSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGCTGCTGTCTGATC.......................1911.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGTCTGATCGCTG...................1911.001100000
droVir3
GA--------AA-AA---TTTAAA--AAAAAAG---------------------------------------------------------------AATCTATAAATAGGCA------C---------------GG----------------------------------------------------GTCTTTTCATGG--CTGCCC----ATAGAGATCTCAGAGATC-TGAG-----AGCTCCCAG--------------------------------------------AGCCAGTGGTGC-TACG-T--TGTTGTAGATACCGA-CTA-TATGT-TTCGA--TA------TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTCGAAGTTGCAACTCATTCCGT--GATTGTTCCGATTTGCAGGCTTAACTGGGATTTTAATGATGCTGACCGCCCCGTGGATCGTCGCCAT------GSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATGATGCTGACCGC.........................1911.001000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCGTGGATCGTCGCC.........1811.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGATGCTGACCGCCC.......................1811.001100000000000000000000000000000000000000000000000000000000000000
droGri2
GA--------AC-AAATATT------TTTTTAAA--------------------------------------------------------------TATCTATAAATAGACG------T---------------GGGACTT-CT---GTTGGCCGAG---AG------AGATCCCCGAGCCATACACAGATTTTGACTGC--TTACACAGACAC--------------------------------------------------------------------------------------------------------------ACACAA----------------------------CCACACA-CAC-A-----------ACATACACACA----CTTACACGT---------------------------------------------------------------------------------------------AAAT-G---TGGCCTATATGTGCCAAACTGTTTCGATATCATTTTCGAAGTTA---TTCACTGGGTTTAACTGTTTCCACTTTCAGTC--CGGCACGATTATAATGATGATGT-------------TGTAATGAT------GSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AA--------AA-AT---G-------TTCATAATTTTTGCCAGAGAAAAT----------------------------------------------TTGCTATAAATAGACT------T---------------GG----------------------------------------------------G--------GGG--CTACACATACAC--------------------------------------------------------------------------------------------------------------ATAGAA----------------------------GGAAATA-TAT-ATAC----AAAGAGA--------------TATATGTATATATATCGGAAGATCTCTCTCTTTTTCCTTGTTTCTCTCTCAGTTTGTCTAATAATTGTCTCTCTTTTTGACTGTTTTGCAGCATTCAACAAAAAA----------AAAT-------------------------------------------------------------------ATA---------TCAAAATAATGATGATTCCTTGCTGGAATTTGATTTC------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
AC--------AC-ACGCAC---ACACACACACG-----------------CACTCACACACACACACACAAGTCCTTTCAGAGGAGGACCGCATTGTTATTTAGTTTAGAAT------GAAAT----------GAA---AT-TG-------AATGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------ACGCCACTGCAATCGGAAT-CG-GCGCTTCGATATTGGACTTTCATTGC------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TC--------AT-GAAAAT-------TGTTCGA---------------------------------------------------------------GTTCTATAAATAGACACGCCCAGCGGT----------GGG---GC-TGC-----GGGTAGGAAGG----------------GAGGGATGGGAGGTCTTTCATGG--CA-------TACAGAAACC--A----------------AGACATCTCTCATCTGTTGCTCTCTCTCTCTATCTCTGTCTGTGGCACATACCACGAGT-ACTCT-GGCTCT--CGTATAATACAACTA-TTTGTCTGT-CTGAT--CT------TCGGCAGAAC-AC-CG---------ACTAC--------GACG------A--------------------------------------------------------------------------------------------------------------------------------------------TGAT----------------------------GAACCAACGCCTGGACCT----------------------CGGCTGGAACTCGACCGT------CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................AGG----------------GAGGGATGGGAGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
droAna3
CA--------CA-CACACA-------CACACAC---------------------------------------------------------------ACACACACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACA--------------CACA------------------------------------------------------------------------------------------------AAAC----------------------------------------------------------------------------------ACACT---------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................AC---------------------------------------------------------------ACACACACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACA--------------CACA------------------------------------------------------------------------------------------------..............................................................................................................................................21130.081010000
droBip1
AGCTTCCCAAAT-GAAAATC------TGAACAG---------------------------------------------------------------ATTCTATAAATAGAGC------G---------------GG---GA-CTG-----GGGCAGGAACT-----------------TGGGGGTTGGG---------GGCTCTGCCCCGATACAGAAAATCATCTCG--------------------------------------------------------------------------------CT-C--TCTGAGATACACGAAACTA-TAAGA-TAC-T--TT------CCCACAGACC-GA-CACTC----CGACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGACGTT-------------------------GATCCGTGGGATTACCTC-------------------------------------G---------SizeHit CountTotal NormTotal
No Reads
droKik1
TT--------GT-AATAAC-------TTTACAC---------------------------------------------------------------AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC----------------------------ACACACA-CAC-ACTC----ACTTAGT--------AGTG------TT-----------------------------------------------------------------------------------------CAACTAAATTGTATTGTTTTATAT-------------------------------------------------------------------ATACC---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AA--------A--GAAAAT-------TGTACAA---------------------------------------------------------------GTTCTATAATTAGAAT------GCGTT----------GAG---GA-TG-------GGGCTT---T-----------------GGGGGATGTAGATCTTTAATGG--CTGCCTCGATACACAAAATCCTCTCACCCTCT------A-AAATCTC--------------------------------------------GGAGAA-TCGTT-CGCC-G--AATGAGAAGCACCCA-CTA-TATGAACTATA--TT------CCCGCAGAAC-GA-CA---------ATGAT--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------G---------SizeHit CountTotal NormTotal
No Reads
droEle1
CA--------AAAGAAAAT-------TGTACAA---------------------------------------------------------------GTTCTATAATTAGATA------GCGAT----------GAG---GA-TG---TTGGGACAGC---AGGGGAAACGG--GGGGAAGGGAAGGGAGATCTTTCATGG--CTGCCCCGATACACAAAATCCACTCGCC-TCA------ACCCATCGC--------------------------------------------GGAGAT-TCTCT-CGCC-A--AGTGAGAAACACCCA-CTA-AAAGA-CTCTA--TT------CCCGCAGAAC-GA-CC---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------G---------SizeHit CountTotal NormTotal
No Reads
droRho1
AC--------AC-AC-ACT-------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAG----------------------------GTACACA-TAC-ACACATTCAGTTACA--------AAGATACA--GC-----------------------------------------------------------------------------------------C----AT--------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AC--------AC-AC-ACA-------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAC----------------------------ACACACA-CAC-ACAC----TCACAAC--------TACG------CC-----------------------------------------------------------------------------------------C----AA--------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AA--------A--GAAAAT-------TGTACAA---------------------------------------------------------------GTTCTTAAAATAGAAT------GCGAT----------GAG---GA-TG-------GGTAGCAAGA-----------------GGGGGATTTAGATCTTTAATGG--CTGCCCCGATACACAAATTCCTCTCATC-TCA------ACCCATCTC--------------------------------------------GGAGAT-GCTCT-CGCC-C--GCTGAGAAACACCCA-CTA-AAAGA-CTCTA--TT------CCCGCAGAAC-GA-CA---------ACGAT--------GATG------C--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------G---------SizeHit CountTotal NormTotal
No Reads
droEug1
AA--------A--GAAAAT-------TGTACAA---------------------------------------------------------------GTTCTATAATTAGAAT------GTGCTGAGCATGAAAGGG---GAGTGGAGATTGAGAAG----C----------------GGGGGACTTTAGATCTTTCATGG--CTGCCCCGATACACAAATTTCTCTCATC-CCAA-----AACCATCTC--------------------------------------------AGCGATTTCTCT-CGCC-C--GATGAGAAACACCCA-CTATAATGA-CTATA--TT------CCCGCAGAACCGA-CA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------G---------SizeHit CountTotal NormTotal
No Reads
dm3
CA--------AA-GAAAAT-------TGTACAA---------------------------------------------------------------ATTCTATAAATAGAAT------ACGAC----------AGA---GA-CG---TTTGGGCAGG---AG----------------GGGGGATTAAGATCTTTCATGG--CTGCCCCGATACACAAATTCCTCTCATC-TCA------ACCCATTAC--------------------------------------------GGAGAT-ACTCT-CGCC-A--GATGAGAAACACCCA-CTA-AAAGA-CTCTA--TT------CCCGCAGAAC-GA-TA---------ATGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGCCTGGAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................G------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGAT.....................................................18127.002700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------G.........2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGAT.....................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000010000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................A---------ATGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGAT.....................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TAAATAGAAT------ACGAC----------AGA---GA-CG---TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................AC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAAC.................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TA---------ATGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGT..........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................A---------ATGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGA......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGAT.....................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----------------------------GATCTGTGGGATTAACAT-------------------------------------C.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGC.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTA...................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................G------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGC.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................TATAAATAGAAT------ACGAC----------AGA---GA-CG---TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGATTAACTC-------------------------------------GGCCTGG...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGGATTAACTC-------------------------------------GGCCTGGAAC2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGATTAACTC-------------------------------------GGCC......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................G------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTA...................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGAT.....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGAT.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................A-CTA-AAAGA-CTCTA--TT------CCCGC.........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................A-CTA-AAAGA-CTCTA--TT------CCCGCAG.......................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TCA------ACCCATTAC--------------------------------------------GGAGAT-ACTCT-CGC............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................TCTA--TT------CCCGCAGAAC-GA-TA---------ATGAC--------........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TA---------ATGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATC.............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGC.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGCC......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGATTAACTC-------------------------------------GGCCTG....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AC--------------------------------------------GGAGAT-ACTCT-CGCC-A--GA.....................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GA-CG---TTTGGGCAGG---AG----------------GGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................C--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGT..........................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGTGGGATTAACTC-------------------------------------GGC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGTGGGATTAACTC-------------------------------------GGCC......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----------------------------GATCTGTGGGATTAAA.................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGG........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................A---------ATGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGT..........................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGGGATTAACTC-------------------------------------GG........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................A---GA-CG---TTTGGGCAGG---AG----------------GGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................C-GA-TA---------ATGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GA...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................ACCCA-CTA-AAAGA-CTCTA--TT------CCC...........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGCCT.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TAC--------------------------------------------GGAGAT-ACTCT-CGCC-A--GATGAGA................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CA--------AA-GAAAAT-------TGTACAA---------------------------------------------------------------ATTCTATAAATAGAAT------ACGAC----------GGG---GA-CGGAGGTTGGGAAGG---A-----------------GGGGGATTAAGATCTTTCATGG--CTGCCCCGATACACAAATTCCTCTCATC-TCA------ACCCATTTC--------------------------------------------GGAGAT-ACTCT-CGCC-A--GATGAGAAACACCCA-CTA-AACGA-CTCTA--TT------CCCGCAGTAC-GA-TA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGCCTGGAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................CCCA-CTA-AACGA-CTCTA--TT------CC............................................................................................................................................................................................................................................................................................2112.00220000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................G------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATT....................................................1911.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................G------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGAT.....................................................1811.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATT....................................................2211.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGAT.....................................................2111.00100000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTA...................................................2311.00110000000000000000
droSec2
CA--------AA-GAAAAT-------TGTACAA---------------------------------------------------------------ATTCTATAAATAGAAT------ACG-------------GG---GA-CG---GTTGGGGAGG---A-----------------GGGGGATTAAGATCTTTCATGG--CTGCCACGATACACAAATTCCTCTCATC-TCA------ACCCATTTC--------------------------------------------GGAGAT-ACTCT-CGCC-A--GATGAGAAACACCTA-CTA-AACGA-CTCTA--TT------CCCGCAGAAC-GA-TA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACTC-------------------------------------GGCCTGGAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................G------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTA...................................................2011.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC----------------------------GATCTGTGGGATTAACT................................................2011.0010100
........................................................................................................................G-------------GG---GA-CG---GTTGGGGAGG---A-----------------GGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
droYak3
AA--------AA-GAAAAT-------TGTACAA---------------------------------------------------------------ATTCTATAAATAGAAT------GCGAC----------GGC---GA-CG---GTTGGTTAGG---AGGA---------GGAGGAGGGGATTAAGATCTTTCATGG--CTGCCCCGATACACAAATTCCTCTCATC-ACAC----AACCCATTTC--------------------------------------------GGAGAT-GCTCTCCGCC-AGAGAAGAGAAACACCCA-CTA-AAAGA-CTCTATATTCCCATGCCCGCAGAAC-GA-TA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GAACTGTGGGATTAACAC-------------------------------------CGC------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................A---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GAACTGT..........................................................2211.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................AGAAC-GA-TA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CG...............................................................................................2111.00100000100000
...............................................................................................................................................................................................................................................................................................................................................................................................AC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GAACTGTGGGAT.....................................................2311.00110000000000
............................................................................................................................................................................................................................................................................................................................................................................................................G------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GAACTGTGGGATTAAC.................................................2211.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------------------------GAACTGTGGGATTAACA................................................1911.00101000000000
droEre2
AA--------AA-GAAAAT-------TGTACAA---------------------------------------------------------------ACTCTATAAATAGAAT------ACGAC----------GGG---GA-CG---GTTGGCTAGC---A-----------------GGGGGATTAAGATCTTTCATGG--CTGCCCCGATACACAAATTGCTCTCATC-TCAACCTCATCCCATTTC--------------------------------------------GGAGAT-ACTCT-CGCC-A--GATGAGAAACACCCA-CTA-AAAGA-CTCTA--TT------CCCGCAGAAC-GA-TA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACGC-------------------------------------G---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................G------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGGGATTAACGC-------------------------------------..........2411.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................A-TA---------ACGAC--------GATG------A--------------------------------------------------------------------------------------------------------------------------------------------CGAC----------------------------GATCTGTGG........................................................2611.0011000000

Generated: 05/17/2015 at 11:46 PM