ID:

dmo_1141

 Coordinate:

scaffold_6496:14016150-14016433 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-51.7 -51.6 -51.5

Flybase annnotation

CDS [Dmoj\GI18918-cds]; exon [dmoj_GLEANR_3854:6]; CDS [Dmoj\GI18918-cds]; exon [dmoj_GLEANR_3854:5]; intron [Dmoj\GI18918-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGACACAGAACCGCTAAGCCGCAGTCCCATCAAGAACAAGAAGGACAAGGTAACTAGAAGATTTGGCCGCTGAGTCCGACTCGAGATGCAGATGCTCAATGATTAATGGCAGTTGTTAACCAGATACTGAATTACTTTATTTTTTCTCGGTTTGTTACTAACTCTCACTCACAAACCAAACCAAATACATGCACACACACACACAAACACACACACACACACGAATGCCGTGTGTCCGTGCTCGTTAACCTGCTGCTCGTTGCATTCGATTTGATTCGATTCTAACAACATTGTTAACCCCAATCACATACATATATGAATATGCGTAATCAGTTAATACGCGAATCGAGCACCGGTACAGCCTCAGCCTCCTCGCAGAGCTC
**************************************************.............(((((..(((.(((((...)).))).)))..)).)))((((((((((((((.((((((.((.........................(((((((...............)))))))..................................(((..(((((((.....)))))))..))))).))))))..))))).))).....((((......))))...(((((....)))))..............(((((....)))))..)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 V110
male body		 M046
female body
 V056
head
............CGCTAAGCCGCAGTCCCATC................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0
....................CGCAGTCCCATCAAGAACAAGAAG.................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0
....................CGCAGTCCCATCAAGAACA......................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
....................................................................................................TGATTAATGGCAGTTGTTAACC...................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
................................AAGAACAAGAAGGACAAG.............................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0
...............................................AAGGGCGCTAGAAGATTTGGC............................................................................................................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 1
......CAGAAGCGCTAAGCCGAA........................................................................................................................................................................................................................................................................................................................................................................ 18 2 7 0.14 1 0 0 1 0
............................................................................................................................................................................................................................................................................................................................................GGTTGATACGGGAATCGAG................................. 19 3 9 0.11 1 0 1 0 0
..........................................................................................................ATTGCAGTAGTTAAACAGATA................................................................................................................................................................................................................................................................. 21 3 13 0.08 1 0 1 0 0
...................................................................................................................................................................................................................................GCCGTGTGACAGTGCTCAT.......................................................................................................................................... 19 3 14 0.07 1 0 0 0 1
.............................................................................................................................................................................................................................................CGTGTTCGTTAACATGATG................................................................................................................................ 19 3 17 0.06 1 0 1 0 0
.................................................................................................................................................................................................................AGATACCCACACACGAATGC........................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

TCCTGTGTCTTGGCGATTCGGCGTCAGGGTAGTTCTTGTTCTTCCTGTTCCATTGATCTTCTAAACCGGCGACTCAGGCTGAGCTCTACGTCTACGAGTTACTAATTACCGTCAACAATTGGTCTATGACTTAATGAAATAAAAAAGAGCCAAACAATGATTGAGAGTGAGTGTTTGGTTTGGTTTATGTACGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGCTTACGGCACACAGGCACGAGCAATTGGACGACGAGCAACGTAAGCTAAACTAAGCTAAGATTGTTGTAACAATTGGGGTTAGTGTATGTATATACTTATACGCATTAGTCAATTATGCGCTTAGCTCGTGGCCATGTCGGAGTCGGAGGAGCGTCTCGAG
**************************************************.............(((((..(((.(((((...)).))).)))..)).)))((((((((((((((.((((((.((.........................(((((((...............)))))))..................................(((..(((((((.....)))))))..))))).))))))..))))).))).....((((......))))...(((((....)))))..............(((((....)))))..)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M060
embryo
 V056
head
 V049
head
......................................................................................................................................................................................................................GTGTGTGTGCTTCCAGCA........................................................................................................................................................ 18 2 12 0.08 1 0 0 0 1
............................................................................................................CCATCAAGAATTGGTCTAC................................................................................................................................................................................................................................................................. 19 3 13 0.08 1 1 0 0 0
.................................................................................................................................................................................................................................CACGGTACCCAGGCACGA............................................................................................................................................. 18 3 20 0.05 1 0 1 0 0
............................................................................................................................................................................................................GTTTGTGTGTGTGTGTGTGC................................................................................................................................................................ 20 0 20 0.05 1 0 1 0 0
...............................................................AACCGGTGACTCAGGCAGAGC............................................................................................................................................................................................................................................................................................................ 21 2 20 0.05 1 0 0 1 0
.....................................................................................................................................................................................................TGTGTGTGTTTGTGTGTGT........................................................................................................................................................................ 19 0 20 0.05 1 0 0 1 0
..................................................................................................................................................................................................................................................................................TAAGCCAAGATTGTCGTAG........................................................................................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:14016100-14016483 - dmo_1141 A-------GGACACAGAACCGCTAAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACTAGAAGA---------------------------------------TTTGG----------------------CCGCTGAGTCCG-----------------------------------------------------------ACTCG-----AGA-TG---C-----AGATGCTCAATGATTAA-----TGGCAGTTGTTAACCAGATACT---------------------------GA----ATTA---CTTT-A---TTTTTTCTCGGTTTGTTACTAACTC--TC-----------A-CT--CACAAACCAA--ACCAAATACATGCACA-----CACACA------CACA--AACA------CACACACA----------CACA---------------------CGAA-TGCC-------------------------------------------------------GTG-----------------TGTC----------------------------------CGTGCTCGT-TAACCTGC-TGCTC--------------GTT-GCATTCGATTTGATTCGA-TTCT------------------------------------AAC----------AAC------AT-TGTTAACCCC-----A--------------------------A-----------TCACATAC-ATATATGAATATGCGTAA------------TCAGTTAATACGCGAATCGAGCACCGGTACAGCCTCAGCCT---CCTCGCAGAGCTC
droVir3 scaffold_13324:2762028-2762466 + dvi_22420 T-------GGACACAGATCCACATGCCCGTAGCCCCATTAAGA---ACAAAAAGGACAAGGTAACTAGCCGG---------------------------------------CTTAG----------------------CTGTTGAGCCTGCCA-----GCCTGT-CA-----GC--------GTTG--------------TTA---ATGACTTG-----AGC-TG---AATATCACATGTTTAACGAT--T-TA--TGGGAG-TGTTAACCAGATATT---------------------------CT----T-TTTA-CTTTAC-TTTTTTTTCTCGGTTTGTTACTAACTC--TA-----------A-CT--CACAAACCAA--AACA----CATGCACA-----CA----------CA--------------CACACACA----CGCACACACA--CA-----------------ACTA-TCGT-------------------------------------------------------GTGCCCC-------------ATT--GTCA------------ATGA--------CAAAACGTGCCTGT-TGTCCTGC-TGCTC--------------GTT-GCTC--GAATCGAATCCA-ATCTTGCCGTTGCT--------------------------AACAA-----ACAAACTTGTTCTGACATTAACCCT-TTA-T--------------------------A----------ATTAAA---TAA---T-----CAATTAA------------CCAGTTAATCCGTGAATCGAGCACCGGTACAGCCTCAGCCT---CCTCGCAGAGCTC
droGri2 scaffold_15112:3600749-3601183 + A-------TGATATGGATGCACACAGTCGCAGTCCCATCAAGAAGGACAAAAAGGACAAGGTAACACTAGCA---------------------------------------CTAGG----------------------GAGTTGAGCCTGTAAATTGAGCCTGATCCGCTAGCCTTAGAGAGCCAG--------------CC----T-----TA-----AGATTG---A-----ACATGTTTAACAATATT-CATGTGGGA---GTTAATCAGATAAT---------------------------AA----TTTT---GTTTACCTTTTTTTTCTCGGTTCGTTACTAACTCTCACAACT-------CTCTCACACAAACCAA--ACCAAA----------CCA--------------AACCCAACC-------AACACACA-----------------------------------TGCA-CACA-------------------------------------------------------A-------------------AT-----------------TAATGAA-------CACGATGTGCTCGCCTAACCTGC-TGCTC-------------GTTT-GCGT-------------------------------------------------------GAA-----------TC------GTACCCTAATCCCAACATA--------AA------CACCAAC--TAAC-------C-----T---AAT--CTAACT-AAACTAATTAACAAAAAACAAAGTTAATACGCGATTCGAGCACCGGCACAGCCTCAGCCT---CCTCGCAGAGTTC
droWil2 scf2_1100000004510:3003841-3004279 - GG------CGATGCCGATGCCCATAGTCGCAGTCCCATTAAGAAGGACAAAAAGGATAAGGTATGGCAAACTA------------------------------------------------------TACCCATCGCCCACTTGGACCTGACA-----GA------------AT--------ATTTCAAACCATTTGCACCCA---T-----TG-----------------------TGTTCAACGAGT-T-T---TTTAA---ACTAAAAA----CCATCTACTACCTACTACATACATATATCTAATTTTTTT---ATTTAC---TTTCTTCTCGGTTTGTTACTAACTC--TT-----------T-TT--CTCAAAAAAA--ACAA------------AC------------------------A--------CACACATT--CA--------CACAAACACTTAACCCTCACATGCA-CTCCAAAAAAAAACAAAAACACAAC----------------------------------GTG-----------------ATG---AC----------CTAATGATCTATTCGAATGATGTGCTCGT-TGAAAA--------ATTTTAAAT--T------------------------------------------------------------------------------------------C-CTAATCCT-----C-------AAA------T---------GACACTCAAA-AATAA--------------------AAC------------CAAGTTAATACGCGAATCGAGCACTGGCACTGCCTCCGCCT---CCTCGCAGAGCTC
dp5 3:9958588-9959075 + A-------TGATGCGGACGCGCACAGCCGCAGTCCCATAAAGA---ACAAGAAGGACAAGGTAACTGACGCT---------------GCTGACTGAGGATTCCGGCTGGCACTTGCCTA---GCTTGA--------------------------------------------CC--------TTAG--------------CT----------TGAGATGAGA-TG---A-----CCGTGTTTAACGAT--T-T---TCGGA---CTTAACAAAATATT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--A--------------CT--CACAAACCAA--ACCA-----------------------------AACA--AACA------CACGCACACGCACT--------TACA-----------------ACCA-CT-----AAATACCGATACAACAACATGGTGTACATCTTCGTCTTGGCCTTCGTCTCTGGTGACCCA---CCATCCATGATAATGATAATGATAACGATAATGAT-------AATGATGTGCTCGT-AATTCTGCCTGCCC--------CC-TTTGTG-GCCT--GAACTGACTCGCC--------------CTACCACTCCATACTAAAACCCCGAA--------------TC------GT---------------------------------------------------------ACATCC-----CCCAA--AAACTAA------------CCAGTTAATACGCCAATCGAGCACCGGCACCGGTTCGGCCT---CCTCGCAGAGCTC
droPer2 scaffold_4:5276818-5277315 + CGAGGAAATGATGCGGACGCGCACAGCCGCAGTCCCATAAAGA---ACAAGAAGGACAAGGTAACTGACGCT---------------GCTGACTGAGGATTCCGGCTGGCACTTGCCTA---GCTTGA--------------------------------------------CC--------TTAG--------------CT----------TGAGATGAGA-TG---A-----CCGTGTTTAACGAT--T-T---TCGGA---CTTAACAAAATATT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--A--------------CT--CACAAACCAA--ACCA-----------------------------AACA--AACA------CACGCACACGCACT--------TACA-----------------ACCA-CT-----AAATACCGATACAACAACATGGTGTACATCTTCGTCTTGGTCTTCGTCTTTGGTGACCCACCACCATCCATGATAATGATAACGATAACGATAATGAT-------AATGATGTGCTCGT-AATTCTGCCTGCCC--------CC-TTTGTG-GCCT--GAACTGACTCGCC--------------CTACCACTCCATACTAAAACCCCGAA--------------TC------GT---------------------------------------------------------ACATCC-----CCCAA--AAACTAA------------CCAGTTAATACGCCAATCGAGCACCGGCACAGGTTCGGCCT---CCTCGCAGAGCTC
droAna3 scaffold_13266:11437876-11438228 - C-------CGACGGAGA---CCTCAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACGTATCCTC------------CTAATG-------------GCTAGCACTTGCCTGAGG-------------------------------------------------------------------------------------------------ACA-TG---A-----CACGATTTAACAATGATTT---TCGGA---GTTAACCAGA-GTT------------------------------------T---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACCAA-----A-CT--CACAAACCAA--ACAA------------AC-------------------------------CACACACA-----------------------------------TCCA-CTCC-------------------------------------------------------GTG-----------------ATTCCGACT------------C-------------CGACGTGCTCG--AA-------------TGTTAACCC-GC----------------------------------------------------------------------------AAA-----------ATTAACCCC-----TAACCCTAA-CCGTAACCGT-AACCGTAAC-------C-----G---TAA---CCACT-ACACTGA------------TCAGTTGATGCGACAATCGAGCACCGGCACGGCTTCGGCCTCCTCCTCGCAGAGCTC
droBip1 scf7180000396547:1024378-1024712 + C-------CGACGGAGA---CCTCAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACGCATCCTC------------CTGGTG-------------GCTAGCACTCGCCTGAGG-------------------------------------------------------------------------------------------------ACA-TG---A-----CACGACTTAACCATGATTT---TCGGA---GTTAACCAGA-GTT------------------------------------T---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACCAA-----A-CT--CACAAACCAA--ACAA------------CCA------------------------------AACACACA-----------------------------------TCCA-CTCC-------------------------------------------------------GTG-----------------AT-CCGACT------------C-------------CGACGTGCTCG--AA-------------TGTTAACCC-AC----------------------------------------------------------------------------AAA-----------ATTAACCCC-----TAACCCTAA-C--------------------------C-----G---TAA---CCACT-ACACTGA------------TCAGTTGATGCGACAATCGAGCACCGGCACGGCTTCGGCCTCCTCCTCGCAGAGCTC
droKik1 scf7180000302682:948246-948605 + A-------GGGAGCCGATGCCCACAGCCGCAGTCCCATTAAGA---ACAAGAAGGACAAGGTAACTTGGCCAGTTG-GTAACCCAC---TGCCT------------------------GATG----AT---------------------------TGAT-------------TC--------CTAG--------------CTAATAA-----TG-----AGA-TGATGAACAGATGATGTTTAACCATGA----------------------GA-GTG-------------------------------TTTCTT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACCAACCACCA-CT--CACA-ACCAA--ACAA------------AA------------------------A----AACACACACT------------A----------------------CCAA-CTC---------------------------------------------------------------------------------------------------------------CGATGTGCTCGT-TA-------------TGT---CC---------CCCT--GAACT----------------------ATAAAACT--------------------------------AT------ATAACTTAACCCC-CTA-A--------------------------A----------AATAAAACCAAA---CCAA--ACACTAA------------CCAGTTGATGCGACAATCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGCTC
droFic1 scf7180000454044:955569-955970 + C-------TGATGGCGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACTCATCCAGCCA-ATAACATAATAGTGCCT------------------------GACG----ATAC------------------------------------------CTATAGCT--ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGATTT---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACCAACC---A-CT--CACAAACCAA--ACAA------------CCAACCAAACAACCG--AACC--AAAA------CACACACA--------------TCCA-----------------TCCA-CTCT-------------------------------------------------------GTG-----------------CCACTGAAA-TGA-----CTAATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCCATCCGTT-CCCT-------------------------------------------------------AAAAA-------ACAC------ACGCCTTAACCCT-----T-------GAA------C---------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTC
droEle1 scf7180000491211:607714-608076 - G-------CGATGGCGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACTCATCCACCCA-TTAACTGACTAATGCCT------------------------GACG----AT--------------------------------------------AC--------TTAG--------------CTA---T-----TG-----AGA-TG---A-----ACACGTTTAACGATGATTT---TTGGA---GTTAACCAGA-GTT-----------------------------------TTTACTTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CCA--------------AACA--ACCA------CACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ACTCTGAAA------------ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TCCGTGTCCCT-------------------------------------------------------AAA-----------AC------ACACCTTAACCCC-----T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTC
droRho1 scf7180000780106:111408-111780 - G-------CGATGGGGACGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGATAAGGTAACTCATCCAGCCA-TTAACTGAATAATGCCT------------------------GACG----AT--------------------------------------------AC--------TTAG--------------CTA---T-----TG-----AGA-TG---A-----ACACGTTTAACGATGATTT---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CCAACCAACCA------ACCA--ACCACACACACACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ACTCTGACA------------ATGA--------AATGATGTGCTCGT-AT-------------TGTTAACCC-TCCGTC-CCCT-------------------------------------------------------AAA-----------AC------ACACCTTAACCCC-----T--------------------------A-------------------------------ACACTAA------------CCAGTTGATACGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTC
droBia1 scf7180000302292:1206494-1206851 - C-------CGACGGAGACGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACCCATCCAGCCA-TTAACCCTCGAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGTT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CC--CACAAACCAA--ACAA------------CCA--------------CACA--CC------CACACACACA-----------------------------------CCCA-CTCT-------------------------------------------------------GTG-----------------ATTCTGATT------------ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TCCGTG-CCCT-------------------------------------------------------CGA-----------AC------ACATCTTAACCCC-----T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTC
droTak1 scf7180000415386:255553-255915 + C-------CGATGGGGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACCCATCCAGCCA-TCAACCTACTAATGCCT------------------------GACG----AA--------------------------------------------AC--------TTAG--------------CTA---T-----TG-----AGA-TG---AAC---ACATGTTTAACGATGAT-T---TCGGA---ATTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAAAAACAA------------CCA--------------AACC--TACA----CTCACACACA-----------------------------------TCCA-ATTT-------------------------------------------------------GTG-----------------ACTCTGATT------------ATGA--------AATGATGTGCTCGT-AA-------------CGTTAACCC-TCCGTC-CCCT----------------------------------------------------------------------G------ACACCCTAACCCC-CGA-A--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGGACGGCCTCGGCCT---CCTCGCAAAGTTC
droEug1 scf7180000409663:171619-171987 - C-------CGATGGAGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACCCATCCAGTAA-TTAACCCCCTAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTAACAT-----TG-----AGA-TG---A-----ACACGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--AA--------------CCGA--AAC-A--C-CACACA--CA------CACACACACA-----------------------------------TCCAATTCT-------------------------------------------------------GCG-----------------ACTCTGAC-------------------------AATGATGTGCTCGT-AA-------------TGTTAACCC-TCCGCCCCCCT-------------------------------------------------------AAAAA-------AAAC------ACACCCTAACCCC---G-T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTC
dm3 chr2R:15124519-15124882 + C-------CGATGGCGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGAGAAGGTAACCCATCCAGTTT-TTAACCAACTAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CC------------------------A------CACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ATTCTGAAT------------ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TTCGTC-CCCT-------------------------------------------------------AAAAAAAAAAAAAAAC------ACACCTTAACCCC-CCA-T--------------------------T-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTC
droSim2 2r:15776664-15777022 + dsi_2929 C-------CGATGGCGATGCCCACAGCCGCAGTCCAATCAAGA---ACAAGAAGGAGAAGGTAACCCATCCAGTTT-TTAACCCACTAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CC------------------------A------CACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ATTCTGAAT------------ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TCCGTC-CCCT-------------------------------------------------------AAAAA-----AAAAAC------ACACCTTAACCCC-CCA-T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTC
droSec2 scaffold_1:12639109-12639465 + C-------CGAAGGCGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGAGAAGGTAACCCATCCAGTTT-TTAACCCACTAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CC------------------------A------CACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ATTCTGAAT------------ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TCCGTC-CCCT-------------------------------------------------------AAAAA-------AAAC------ATACCTTAACCCC-CCA-T--------------------------T-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTC
droYak3 2R:14053728-14054088 - G-------C------GATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGAGAAGGTAGCCCATCCAGTTTTTTTACCCACTAATGCTT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACTA------------CCA--------------AAC------A------CAAACACA-----------------------------------TCCA-CTCC-------------------------------------------------------GTG-----------------ATTCTGAATATGA-----AT-ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TACGTC-CCCT-------------------------------------------------------GAAA--------AAAC------ACACCTTAACCCC-CCA-T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTC
droEre2 scaffold_4845:9323938-9324292 + C-------CGATGGCGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGAGAAGGTAACCCACCCAGTCC-TTAACCCACTAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CCA--------------AA--------------CACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ATTCTGAAT------------ATGA--------AATGATCTGCTCGC-AA-------------TGTTAACCC-TCCGTC-CCCT-------------------------------------------------------GAA---------ACAC------ACACCTTAACCCC---A-T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
A-------GGACACAGAACCGCTAAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACTAGAAGA---------------------------------------TTTGG----------------------CCGCTGAGTCCG-----------------------------------------------------------ACTCG-----AGA-TG---C-----AGATGCTCAATGATTAA-----TGGCAGTTGTTAACCAGATACT---------------------------GA----ATTA---CTTT-A---TTTTTTCTCGGTTTGTTACTAACTC--TC-----------A-CT--CACAAACCAA--ACCAAATACATGCACA-----CACACA------CACA--AACA------CACACACA----------CACA---------------------CGAA-TGCC-------------------------------------------------------GTG-----------------TGTC----------------------------------CGTGCTCGT-TAACCTGC-TGCTC--------------GTT-GCATTCGATTTGATTCGA-TTCT------------------------------------AAC----------AAC------AT-TGTTAACCCC-----A--------------------------A-----------TCACATAC-ATATATGAATATGCGTAA------------TCAGTTAATACGCGAATCGAGCACCGGTACAGCCTCAGCCT---CCTCGCAGAGCTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................CGCTAAGCCGCAGTCCCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...........................CGCAGTCCCATCAAGA---ACAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................CGCAGTCCCATCAAGA---ACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
....................................................................................................................................................................................................................................................TGATTAA-----TGGCAGTTGTTAACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.......................................AAGA---ACAAGAAGGACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
droVir3
T-------GGACACAGATCCACATGCCCGTAGCCCCATTAAGA---ACAAAAAGGACAAGGTAACTAGCCGG---------------------------------------CTTAG----------------------CTGTTGAGCCTGCCA-----GCCTGT-CA-----GC--------GTTG--------------TTA---ATGACTTG-----AGC-TG---AATATCACATGTTTAACGAT--T-TA--TGGGAG-TGTTAACCAGATATT---------------------------CT----T-TTTA-CTTTAC-TTTTTTTTCTCGGTTTGTTACTAACTC--TA-----------A-CT--CACAAACCAA--AACA----CATGCACA-----CA----------CA--------------CACACACA----CGCACACACA--CA-----------------ACTA-TCGT-------------------------------------------------------GTGCCCC-------------ATT--GTCA------------ATGA--------CAAAACGTGCCTGT-TGTCCTGC-TGCTC--------------GTT-GCTC--GAATCGAATCCA-ATCTTGCCGTTGCT--------------------------AACAA-----ACAAACTTGTTCTGACATTAACCCT-TTA-T--------------------------A----------ATTAAA---TAA---T-----CAATTAA------------CCAGTTAATCCGTGAATCGAGCACCGGTACAGCCTCAGCCT---CCTCGCAGAGCTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........CACAGATCCACATGCCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
..............................................ACAAAAAGGACAAGGTAACTAGCCGG---------------------------------------CTTAG----------------------CTGTTGAGCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................4211.001000000000000000000000000000000000000000000000000000000000010000
...............................GCCCCATTAAGA---ACAAAAAGGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AACA----CATGCACA-----CA----------CA--------------CACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.061001000000000000000000000000000000000000000000000000000000000000
droGri2
A-------TGATATGGATGCACACAGTCGCAGTCCCATCAAGAAGGACAAAAAGGACAAGGTAACACTAGCA---------------------------------------CTAGG----------------------GAGTTGAGCCTGTAAATTGAGCCTGATCCGCTAGCCTTAGAGAGCCAG--------------CC----T-----TA-----AGATTG---A-----ACATGTTTAACAATATT-CATGTGGGA---GTTAATCAGATAAT---------------------------AA----TTTT---GTTTACCTTTTTTTTCTCGGTTCGTTACTAACTCTCACAACT-------CTCTCACACAAACCAA--ACCAAA----------CCA--------------AACCCAACC-------AACACACA-----------------------------------TGCA-CACA-------------------------------------------------------A-------------------AT-----------------TAATGAA-------CACGATGTGCTCGCCTAACCTGC-TGCTC-------------GTTT-GCGT-------------------------------------------------------GAA-----------TC------GTACCCTAATCCCAACATA--------AA------CACCAAC--TAAC-------C-----T---AAT--CTAACT-AAACTAATTAACAAAAAACAAAGTTAATACGCGATTCGAGCACCGGCACAGCCTCAGCCT---CCTCGCAGAGTTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................CACAGTCGCAGTCCCATCAAGAAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
...............GATGCACACAGTCGCAGTCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
droWil2
GG------CGATGCCGATGCCCATAGTCGCAGTCCCATTAAGAAGGACAAAAAGGATAAGGTATGGCAAACTA------------------------------------------------------TACCCATCGCCCACTTGGACCTGACA-----GA------------AT--------ATTTCAAACCATTTGCACCCA---T-----TG-----------------------TGTTCAACGAGT-T-T---TTTAA---ACTAAAAA----CCATCTACTACCTACTACATACATATATCTAATTTTTTT---ATTTAC---TTTCTTCTCGGTTTGTTACTAACTC--TT-----------T-TT--CTCAAAAAAA--ACAA------------AC------------------------A--------CACACATT--CA--------CACAAACACTTAACCCTCACATGCA-CTCCAAAAAAAAACAAAAACACAAC----------------------------------GTG-----------------ATG---AC----------CTAATGATCTATTCGAATGATGTGCTCGT-TGAAAA--------ATTTTAAAT--T------------------------------------------------------------------------------------------C-CTAATCCT-----C-------AAA------T---------GACACTCAAA-AATAA--------------------AAC------------CAAGTTAATACGCGAATCGAGCACTGGCACTGCCTCCGCCT---CCTCGCAGAGCTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATGATGTGCTCGT-TGAAA.....................................................................................................................................................................................................................................................................2111.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTGCTCGT-TGAAAA--------............................................................................................................................................................................................................................................................1911.00100010
.....................CATAGTCGCAGTCCCATTAAGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATACGCGAATCGAGCACTGGCAC...........................2511.00101000
.........GATGCCGATGCCCATAGTCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
dp5
A-------TGATGCGGACGCGCACAGCCGCAGTCCCATAAAGA---ACAAGAAGGACAAGGTAACTGACGCT---------------GCTGACTGAGGATTCCGGCTGGCACTTGCCTA---GCTTGA--------------------------------------------CC--------TTAG--------------CT----------TGAGATGAGA-TG---A-----CCGTGTTTAACGAT--T-T---TCGGA---CTTAACAAAATATT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--A--------------CT--CACAAACCAA--ACCA-----------------------------AACA--AACA------CACGCACACGCACT--------TACA-----------------ACCA-CT-----AAATACCGATACAACAACATGGTGTACATCTTCGTCTTGGCCTTCGTCTCTGGTGACCCA---CCATCCATGATAATGATAATGATAACGATAATGAT-------AATGATGTGCTCGT-AATTCTGCCTGCCC--------CC-TTTGTG-GCCT--GAACTGACTCGCC--------------CTACCACTCCATACTAAAACCCCGAA--------------TC------GT---------------------------------------------------------ACATCC-----CCCAA--AAACTAA------------CCAGTTAATACGCCAATCGAGCACCGGCACCGGTTCGGCCT---CCTCGCAGAGCTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................AAGA---ACAAGAAGGACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000001
.................................CCCATAAAGA---ACAAGAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................GTCCCATAAAGA---ACAAGAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGGCCT---CCTCGCAGAGCTC2311.0010100000000
droPer2
CGAGGAAATGATGCGGACGCGCACAGCCGCAGTCCCATAAAGA---ACAAGAAGGACAAGGTAACTGACGCT---------------GCTGACTGAGGATTCCGGCTGGCACTTGCCTA---GCTTGA--------------------------------------------CC--------TTAG--------------CT----------TGAGATGAGA-TG---A-----CCGTGTTTAACGAT--T-T---TCGGA---CTTAACAAAATATT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--A--------------CT--CACAAACCAA--ACCA-----------------------------AACA--AACA------CACGCACACGCACT--------TACA-----------------ACCA-CT-----AAATACCGATACAACAACATGGTGTACATCTTCGTCTTGGTCTTCGTCTTTGGTGACCCACCACCATCCATGATAATGATAACGATAACGATAATGAT-------AATGATGTGCTCGT-AATTCTGCCTGCCC--------CC-TTTGTG-GCCT--GAACTGACTCGCC--------------CTACCACTCCATACTAAAACCCCGAA--------------TC------GT---------------------------------------------------------ACATCC-----CCCAA--AAACTAA------------CCAGTTAATACGCCAATCGAGCACCGGCACAGGTTCGGCCT---CCTCGCAGAGCTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................GA-TG---A-----CCGTGTTTAACGAT--T-T---TCGGA---CT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
.................................CCCATAAAGA---ACAAGAAGGACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.....................................................................GCT---------------GCTGACTGAGGATTCCGGCTGGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................................................GTAACTGACGCT---------------GCTGACTGAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
droAna3
C-------CGACGGAGA---CCTCAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACGTATCCTC------------CTAATG-------------GCTAGCACTTGCCTGAGG-------------------------------------------------------------------------------------------------ACA-TG---A-----CACGATTTAACAATGATTT---TCGGA---GTTAACCAGA-GTT------------------------------------T---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACCAA-----A-CT--CACAAACCAA--ACAA------------AC-------------------------------CACACACA-----------------------------------TCCA-CTCC-------------------------------------------------------GTG-----------------ATTCCGACT------------C-------------CGACGTGCTCG--AA-------------TGTTAACCC-GC----------------------------------------------------------------------------AAA-----------ATTAACCCC-----TAACCCTAA-CCGTAACCGT-AACCGTAAC-------C-----G---TAA---CCACT-ACACTGA------------TCAGTTGATGCGACAATCGAGCACCGGCACGGCTTCGGCCTCCTCCTCGCAGAGCTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................TAACAATGATTT---TCGGA---GT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-ACACTGA------------TCAGTTGATGC..............................................2111.001000001
................................TCCCATCAAGA---ACAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............GGAGA---CCTCAGCCGCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
...............GA---CCTCAGCCGCAGTCCCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............................GTCCCATCAAGA---ACAAGAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCGT-AACCGTAAC-------C-----G---TA......................................................................................2120.501001000
droBip1
C-------CGACGGAGA---CCTCAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACGCATCCTC------------CTGGTG-------------GCTAGCACTCGCCTGAGG-------------------------------------------------------------------------------------------------ACA-TG---A-----CACGACTTAACCATGATTT---TCGGA---GTTAACCAGA-GTT------------------------------------T---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACCAA-----A-CT--CACAAACCAA--ACAA------------CCA------------------------------AACACACA-----------------------------------TCCA-CTCC-------------------------------------------------------GTG-----------------AT-CCGACT------------C-------------CGACGTGCTCG--AA-------------TGTTAACCC-AC----------------------------------------------------------------------------AAA-----------ATTAACCCC-----TAACCCTAA-C--------------------------C-----G---TAA---CCACT-ACACTGA------------TCAGTTGATGCGACAATCGAGCACCGGCACGGCTTCGGCCTCCTCCTCGCAGAGCTCSizeHit CountTotal NormTotal
No Reads
droKik1
A-------GGGAGCCGATGCCCACAGCCGCAGTCCCATTAAGA---ACAAGAAGGACAAGGTAACTTGGCCAGTTG-GTAACCCAC---TGCCT------------------------GATG----AT---------------------------TGAT-------------TC--------CTAG--------------CTAATAA-----TG-----AGA-TGATGAACAGATGATGTTTAACCATGA----------------------GA-GTG-------------------------------TTTCTT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACCAACCACCA-CT--CACA-ACCAA--ACAA------------AA------------------------A----AACACACACT------------A----------------------CCAA-CTC---------------------------------------------------------------------------------------------------------------CGATGTGCTCGT-TA-------------TGT---CC---------CCCT--GAACT----------------------ATAAAACT--------------------------------AT------ATAACTTAACCCC-CTA-A--------------------------A----------AATAAAACCAAA---CCAA--ACACTAA------------CCAGTTGATGCGACAATCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGCTCSizeHit CountTotal NormTotal
No Reads
droFic1
C-------TGATGGCGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACTCATCCAGCCA-ATAACATAATAGTGCCT------------------------GACG----ATAC------------------------------------------CTATAGCT--ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGATTT---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACCAACC---A-CT--CACAAACCAA--ACAA------------CCAACCAAACAACCG--AACC--AAAA------CACACACA--------------TCCA-----------------TCCA-CTCT-------------------------------------------------------GTG-----------------CCACTGAAA-TGA-----CTAATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCCATCCGTT-CCCT-------------------------------------------------------AAAAA-------ACAC------ACGCCTTAACCCT-----T-------GAA------C---------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotal
No Reads
droEle1
G-------CGATGGCGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACTCATCCACCCA-TTAACTGACTAATGCCT------------------------GACG----AT--------------------------------------------AC--------TTAG--------------CTA---T-----TG-----AGA-TG---A-----ACACGTTTAACGATGATTT---TTGGA---GTTAACCAGA-GTT-----------------------------------TTTACTTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CCA--------------AACA--ACCA------CACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ACTCTGAAA------------ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TCCGTGTCCCT-------------------------------------------------------AAA-----------AC------ACACCTTAACCCC-----T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotal
No Reads
droRho1
G-------CGATGGGGACGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGATAAGGTAACTCATCCAGCCA-TTAACTGAATAATGCCT------------------------GACG----AT--------------------------------------------AC--------TTAG--------------CTA---T-----TG-----AGA-TG---A-----ACACGTTTAACGATGATTT---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CCAACCAACCA------ACCA--ACCACACACACACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ACTCTGACA------------ATGA--------AATGATGTGCTCGT-AT-------------TGTTAACCC-TCCGTC-CCCT-------------------------------------------------------AAA-----------AC------ACACCTTAACCCC-----T--------------------------A-------------------------------ACACTAA------------CCAGTTGATACGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotal
No Reads
droBia1
C-------CGACGGAGACGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACCCATCCAGCCA-TTAACCCTCGAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGTT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CC--CACAAACCAA--ACAA------------CCA--------------CACA--CC------CACACACACA-----------------------------------CCCA-CTCT-------------------------------------------------------GTG-----------------ATTCTGATT------------ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TCCGTG-CCCT-------------------------------------------------------CGA-----------AC------ACATCTTAACCCC-----T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotal
No Reads
droTak1
C-------CGATGGGGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACCCATCCAGCCA-TCAACCTACTAATGCCT------------------------GACG----AA--------------------------------------------AC--------TTAG--------------CTA---T-----TG-----AGA-TG---AAC---ACATGTTTAACGATGAT-T---TCGGA---ATTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAAAAACAA------------CCA--------------AACC--TACA----CTCACACACA-----------------------------------TCCA-ATTT-------------------------------------------------------GTG-----------------ACTCTGATT------------ATGA--------AATGATGTGCTCGT-AA-------------CGTTAACCC-TCCGTC-CCCT----------------------------------------------------------------------G------ACACCCTAACCCC-CGA-A--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGGACGGCCTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotal
No Reads
droEug1
C-------CGATGGAGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGACAAGGTAACCCATCCAGTAA-TTAACCCCCTAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTAACAT-----TG-----AGA-TG---A-----ACACGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--AA--------------CCGA--AAC-A--C-CACACA--CA------CACACACACA-----------------------------------TCCAATTCT-------------------------------------------------------GCG-----------------ACTCTGAC-------------------------AATGATGTGCTCGT-AA-------------TGTTAACCC-TCCGCCCCCCT-------------------------------------------------------AAAAA-------AAAC------ACACCCTAACCCC---G-T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotal
No Reads
dm3
C-------CGATGGCGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGAGAAGGTAACCCATCCAGTTT-TTAACCAACTAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CC------------------------A------CACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ATTCTGAAT------------ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TTCGTC-CCCT-------------------------------------------------------AAAAAAAAAAAAAAAC------ACACCTTAACCCC-CCA-T--------------------------T-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............GGCGATGCCCACAGCCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTGCTCGT-AA-------------TGTTAACCC-TTCG.............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CAGTCCCATCAAGA---ACAAGAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGCAGTCCCATCAAGA---ACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.................................CCCATCAAGA---ACAAGAAGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CCCATCAAGA---ACAAGAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGCCCACAGCCGCAGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GAT-T---TCGGA---GTTAACCAGA-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................GTCCCATCAAGA---ACAAGAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................ATCAAGA---ACAAGAAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................GTCCCATCAAGA---ACAAGAAGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTCGT-AA-------------TGTTAACCC-TTCGTC-..........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GA---ACAAGAAGGAGAAGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................ACCAGA-GTT-----------------------------------TT---TTGTAC---TT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................A---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTGCTCGT-AA-------------TGTTAACCC-.................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--------AATGATGTGCTCGT-AA-------------TGTTAA.....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................CAAGA---ACAAGAAGGAGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CAAGA---ACAAGAAGGAGAAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................AGA---ACAAGAAGGAGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................AAGA---ACAAGAAGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT-------------------------------------------------------AAAAAAAAAAAAAAAC------.........................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAC------ACACC....................................................................................................................................................2160.1710000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT-------------------------------------------------------AAAAAAAAAAAAAAA................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------AAAAAAAAAAAAAAAC------ACACCC...................................................................................................................................................2390.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAC------ACAC.....................................................................................................................................................20200.1020000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C-------CGATGGCGATGCCCACAGCCGCAGTCCAATCAAGA---ACAAGAAGGAGAAGGTAACCCATCCAGTTT-TTAACCCACTAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CC------------------------A------CACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ATTCTGAAT------------ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TCCGTC-CCCT-------------------------------------------------------AAAAA-----AAAAAC------ACACCTTAACCCC-CCA-T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................GTCCAATCAAGA---ACAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...........TGGCGATGCCCACAGCCGCAGTCCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
...................................AATCAAGA---ACAAGAAGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
................................................................................................................................................................................................................................G---A-----ACATGTTTAACGATGAT-T---TCGGA---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
....................................ATCAAGA---ACAAGAAGGAGAAGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.25100000000000001000
droSec2
C-------CGAAGGCGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGAGAAGGTAACCCATCCAGTTT-TTAACCCACTAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CC------------------------A------CACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ATTCTGAAT------------ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TCCGTC-CCCT-------------------------------------------------------AAAAA-------AAAC------ATACCTTAACCCC-CCA-T--------------------------T-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................GTCCCATCAAGA---ACAAGAAGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
droYak3
G-------C------GATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGAGAAGGTAGCCCATCCAGTTTTTTTACCCACTAATGCTT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACTA------------CCA--------------AAC------A------CAAACACA-----------------------------------TCCA-CTCC-------------------------------------------------------GTG-----------------ATTCTGAATATGA-----AT-ATGA--------AATGATGTGCTCGT-AA-------------TGTTAACCC-TACGTC-CCCT-------------------------------------------------------GAAA--------AAAC------ACACCTTAACCCC-CCA-T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................A---T-----TG-----AGA-TG---A-----ACATGTTTAACGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
........C------GATGCCCACAGCCGCAGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
............................................................................................................................................................................................................................................ATGTTTAACGATGAT-T---TCGGA---GTTAACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
................................................................................................................................................................................................................................................TTAACGATGAT-T---TCGGA---GT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............................AGTCCCATCAAGA---ACAAGAAGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
droEre2
C-------CGATGGCGATGCCCACAGCCGCAGTCCCATCAAGA---ACAAGAAGGAGAAGGTAACCCACCCAGTCC-TTAACCCACTAATGCCT------------------------GACG----AA--------------------------------------------AC--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGTTTAACGATGAT-T---TCGGA---GTTAACCAGA-GTT-----------------------------------TT---TTGTAC---TTTCTTCTCGGTTTGTTACTAACTC--ACAACC-------A-CT--CACAAACCAA--ACAA------------CCA--------------AA--------------CACACACA-----------------------------------TCCA-CTCT-------------------------------------------------------GTG-----------------ATTCTGAAT------------ATGA--------AATGATCTGCTCGC-AA-------------TGTTAACCC-TCCGTC-CCCT-------------------------------------------------------GAA---------ACAC------ACACCTTAACCCC---A-T--------------------------A-------------------------------ACACTAA------------CCAGTTGATGCGACAGTCGAGCACCGGCACGGCTTCGGCCT---CCTCGCAAAGTTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................GTAC---TTTCTTCTCGGTTTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0021000100
.............................................................................................................................................................................C--------ATAG--------------CTA---T-----TG-----AGA-TG---A-----ACATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
......................................................................................................................................................................................................................................................................................................................................................TTACTAACTC--ACAACC-------A-CT--CACAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------CCAGTTGATGCGACAGTCGAG....................................2211.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---A-T--------------------------A-------------------------------ACACTAA------------CCAGTTGA.................................................2011.0011000000
........................................................................................................................................................................................................................................................................GTTAACCAGA-GTT-----------------------------------TT---TTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100

Generated: 05/17/2015 at 11:48 PM