dmo_1133

Name	Class	Family	Strand
(CA)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATCATTAAGGACCTGTTTATCAACGATCCTAAACGCTTCTCCAAATACAGGTGAGTTCTTACGGTTATACGGTTCATACACACACACATACACACACGCACACACACATTAATGAATGCCGATAAAGCTAGATTTCAAATTTTCTATGCGTGTATGCGTATATCTGTATATGTTATACACACATTTATTTGAATGTATTTATTGGGCGGTCAAATCGCTGAGCTTTGGGGTTTGGGAAAAAAAGTGTTGGA ************************************************((((.....(((((.((((((...(((((((................(((..((........))..))).......((((((..........)))).))))))))))))))).)))))....))))....((((((....)))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
..............GTTTATCAACGATCCTAAACGCTTCTCCA................................................................................................................................................................................................................	29	0	1	1.00	1	1	0
..........ACCTGTTTATCAACGATCCTAAACG........................................................................................................................................................................................................................	25	0	1	1.00	1	1	0
...................................................................................................................................................................................................................ATATCGCTGAGCGTTGGGGC....................	20	3	4	0.25	1	1	0
..............GTTTATCAAGGATCGTAAGC.........................................................................................................................................................................................................................	20	3	10	0.20	2	0	2
..................................GCTTCTCCAAATACAGTTT......................................................................................................................................................................................................	19	2	8	0.13	1	1	0
..........................................................................CATACACACACACATACACACA...........................................................................................................................................................	22	0	20	0.10	2	2	0

TAGTAATTCCTGGACAAATAGTTGCTAGGATTTGCGAAGAGGTTTATGTCCACTCAAGAATGCCAATATGCCAAGTATGTGTGTGTGTATGTGTGTGCGTGTGTGTGTAATTACTTACGGCTATTTCGATCTAAAGTTTAAAAGATACGCACATACGCATATAGACATATACAATATGTGTGTAAATAAACTTACATAAATAACCCGCCAGTTTAGCGACTCGAAACCCCAAACCCTTTTTTTCACAACCT ************************************************((((.....(((((.((((((...(((((((................(((..((........))..))).......((((((..........)))).))))))))))))))).)))))....))))....((((((....)))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	V049 head	M046 female body
..............................TTCGCGAAGAGGTTAATGTC.........................................................................................................................................................................................................	20	2	1	1.00	1	1	0	0
...................................................................................................................................................................................GTCTAAATAAACTGACATAAA...................................................	21	2	2	0.50	1	0	1	0
........................................................................................................................GTTTTTCGATCTATAGTTTAAA.............................................................................................................	22	3	9	0.11	1	0	1	0
....................................................................................GTGTATGTGTGTGCGTGTGTGTG................................................................................................................................................	23	0	20	0.10	2	2	0	0
.....................................................................CCCAAGTATGGGTCTGTGTA..................................................................................................................................................................	20	3	13	0.08	1	1	0	0
.....................................................................................TGTATGTGTGTGCGTGTGTGTG................................................................................................................................................	22	0	20	0.05	1	1	0	0
...................................................................................TGTGTATGTGTGTGCGTGTGTGTG................................................................................................................................................	24	0	20	0.05	1	0	0	1
.............................TTTCGCGAAGAGGTTAATGT..........................................................................................................................................................................................................	20	3	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:13706788-13707038 +	dmo_1133	ATCATTAAGGACCTGTTTATCAACGATCCTAAACGCTTCTCCAAATACAGGTGAGTTCTTAC----------------------GGTTAT------ACGGTTCA----------------------------TACACACACACATACACACACGCAC-------------------------------------------------------------------------------------ACA--------CACATTAATGAATGCCGATAAAGCTAGATTTCAAAT-----------TTTCTATGCGTGTATGCGTATAT--------CTGTATATGTTATACACACATTTATTTGA---------------------ATGTATTTATTGGGCGGTCAAATCGCTGAGCTTTGGGGTTTGGGA--AAAAAAGTGTTGGA
droVir3	scaffold_12875:1783910-1784135 -	dvi_4912	GTCATTAAGGATCTGTTTGTCAATGATCCAAAACGGTTTACCAAATATAGGTGAGTTTTCAC----------------------GGTCAT------C-----------------------------------TATGAACACTCGCACCTATGCGCAC------ATGT---------------------------------------------------------------------------ATA--------CCGATTCACCCAC-------------------------ATTTTTACATGTGTGTGT------ATGTGTGTTATCATTGATATAC-----------ATATTAATTTTA---------------------ATGTATTGATTGAGCGCCCAAATCAAAGAGCATTAA-ATTAGGGAGTAAAAAAGTGTTGGT
droGri2	scaffold_15112:3879686-3879892 -		GTCATTAAGGATCTCTTTGTCAATGATCCCAAGCGATTCACCAAATACAGGTGAGCAAAATG---------------------T---------------TTTTTTCACGGTCAACTTTACATACAT---------------ATATGTACATATACACACACATATAAATCATTTGAAAGCTACTTTCTATTACATTTACATAAGTAAGC--------------------------------------------------------------------------------------------TT----GTGAGTGTGTGTATTTATGTATGTGTGTGGAT---ATGCTGGAATTTATT-------------------------------------------------------------------------------------
droWil2	scf2_1100000004884:724460-724601 +		TTCACACAAA-CA----------------------------------------------------------------------------C------A-----------------------------------CAC------ACACACACACACACACACACATATGTA---------------TGTCTACTACCCTTATGTATATAAACGAAATGTGCATATTTATTTATGTATATATTCTTGTATATATATATATCTGAAT--------------------------------------------------------------------------------ATATATACATATATTTGA---------------------A------------------------------------------------------------
dp5	XR_group6:10802624-10802784 +		TTACACACATACAGCTAC------------------------------------------------------------------------------------------------------------------TACACACACACACACACACACACACACACAT---------------------------------------------------------------------------------------------ACAGACAGACAGACATCAAAATCGTTTTCACCTACATATGTATGTATGTATGC------ATGCATGCATGTATATATGTATATACTATATA-----------TAACACTATAGTCAATTATTGAAGTGT---------------------------------------------------------
droPer2	scaffold_2:8023377-8023433 -		GTTATTAAAGATTTATTTGTTAACGATCCGAAGCGATTTTCAAAGTTCAGGTGAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:1216440-1216498 +		AAAATCAAGGACCTCTTCCAGAATGATGCCAAGCGGTTTTCCAAATACAGGTGGGTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396730:2216029-2216125 +		AAAATCAAGGACCTGTTCCAAAATGATGCCAAGCGGTTTTCCAAATACAGGTGGGTGAAAGG----------------------AGTCTC-----------------------------------------------------------------------------------------------------------------------------------CTTTTTTTTGGGGATATACATACA--------TACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droKik1	scf7180000302682:1363783-1363940 -		AACATCAAAGATCTGTTCGTGAAGGACCCCAAGCGGTTCTCCAAATACAGGTGGGTTTTAGCTTTGTTAGATTACGAAATACGT---------------TTTTTTT------TAAGTTACGTGGGTAT-ACCTACAAGCGCGCATATCCACACGCAC-------------------------------------------------------------------------------------TCA--------AGTTTGGGTGTATGTAGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453851:1497033-1497173 +		AACATCAAGGACCTTTTTGTTAAGGATCCGAAAAGGTTTTCCAAATACAGGTGGGTTTATTG----------------------GGGTCGGTATTTTTCA-CACCCAGGGTTAAGGTTACGTATGTAGTACCC----------ACATACAC--GAGC-------------------------------------------------------------------------------------ATA--------CTCGTTTGTGTATCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490483:54408-54464 +		AACATTAAGGACCTGTTCGTGAAGGACCCCAAGAGGTTCTCCAAATACAGGTGGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000780108:162812-162868 -		AACATCAAGGACCTGTTCGTGAAGGATTCCAAAAGGTTCTCCAAATACAGGTGGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302291:2745510-2745570 -		AACATCAAGGACCTGTTCGTGAAGGACCCGAAGAGGTTCTCCAAATACAGGTGGGTTTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415386:439881-439940 +		AACATCAAGGATCTGTTTGTCAAGGATGCGAAGAGGTTCTCCAAATACAGGTGGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409183:454750-454869 -		AACATCAAGGATCTGTTCGTAAAGGACCCGAAAAGATTCTCCAAATACAGGTGGGTTTATCC----------------------AGAGAT------TTCGTCTACAAGGGTTAGAGTTACGTATGTAGCAACC----------AC-------------------------------------------------------------------------------------------ATACATACA--------AACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:4800925-4800987 -		AACATCAAGGACCTGTTCGTGAAGGATTCCAAGAGATTCTCAAAATACAGGTGGGTTTTTGT----------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:5609861-5609923 -		AACATCAAGGACCTGTTCGTGAAGGACTCCAAGAGATTCTCAAAATACAGGTGGGTTTTTGT----------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_1:2438800-2438862 -		AACATCAAGGACCTGTTTGTGAAGGACTCCAAGAGATTCTCAAAATACAGGTGGGTTTTTGT----------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2L:17458901-17459038 -		AACATCAAGGACCTGTTCGTAAAGGATGCCAAGAGATTCTCAAAATACAGGTGGGTTTTTCT----------------------GGCGAT------TTCACCTCCGAGGGTGGAAGTTACGTATGTAGTTCCA----------TTACACAC-------------------------------------------------------------------------------------ATACATACA--------CTCATTTGTGTATCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:17848939-17849070 +		AACATCAAGGACCTGTTCGTGAAGGACTCCAAGAGGTTCTCAAAATACAGGTGGGTTTTTAT----------------------AGCGAT------TTCGCCCCCGATGGTGGAAGTTACGTATGTAGTTCCC----------AC-------------------------------------------------------------------------------------------ATACATACA--------CTCATTTGTGTATCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ATCATTAAGGACCTGTTTATCAACGATCCTAAACGCTTCTCCAAATACAGGTGAGTTCTTAC----------------------GGTTAT------ACGGTTCA----------------------------TACACACACACATACACACACGCAC-------------------------------------------------------------------------------------ACA--------CACATTAATGAATGCCGATAAAGCTAGATTTCAAAT-----------TTTCTATGCGTGTATGCGTATAT--------CTGTATATGTTATACACACATTTATTTGA---------------------ATGTATTTATTGGGCGGTCAAATCGCTGAGCTTTGGGGTTTGGGA--AAAAAAGTGTTGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............GTTTATCAACGATCCTAAACGCTTCTCCA...............................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..........ACCTGTTTATCAACGATCCTAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................CA----------------------------TACACACACACATACACACA..................................................................................................................................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0

droVir3

GTCATTAAGGATCTGTTTGTCAATGATCCAAAACGGTTTACCAAATATAGGTGAGTTTTCAC----------------------GGTCAT------C-----------------------------------TATGAACACTCGCACCTATGCGCAC------ATGT---------------------------------------------------------------------------ATA--------CCGATTCACCCAC-------------------------ATTTTTACATGTGTGTGT------ATGTGTGTTATCATTGATATAC-----------ATATTAATTTTA---------------------ATGTATTGATTGAGCGCCCAAATCAAAGAGCATTAA-ATTAGGGAGTAAAAAAGTGTTGGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...ATTAAGGATCTGTTTGTCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATTAAGGATCTGTTTGTCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCAATGATCCAAAACGGTTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AATGATCCAAAACGGTTTACCAAATA...........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AATGATCCAAAACGGTTTACCA...............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AATGATCCAAAACGGTTTACCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATCTGTTTGTCAATGATCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CATTAAGGATCTGTTTGTCAATGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGTCAATGATCCAAAACGGTTTACCA...............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATCTGTTTGTCAATGATCCA............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TTAAGGATCTGTTTGTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGATCCAAAACGGTTTACCAAATATAG........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TAAGGATCTGTTTGTCAATGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CATTAAGGATCTGTTTGTCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCATTAAGGATCTGTTTGTCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTAA-ATTAGGGAGTAAAAAA........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAATGATCCAAAACGGTTTACC................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CATTAAGGATCTGTTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GATCCAAAACGGTTTACCA...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TGTTTGTCAATGATCCAAAACGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TAAGGATCTGTTTGTCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TAAGGATCTGTTTGTCAATGATCCAAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TTAAGGATCTGTTTGTCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ATCCAAAACGGTTTACCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TGTTTGTCAATGATCCAAAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTCAATGATCCAAAACGGTTTACCAA..............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GATCCAAAACGGTTTACCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CATTAAGGATCTGTTTGTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................GTCAATGATCCAAAACGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GTCATTAAGGATCTGTTTGTCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGATCCAAAACGGTTTACC................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAATGATCCAAAACGGTTTACCA...............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATTAAGGATCTGTTTGTCAATGA................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GTCATTAAGGATCTCTTTGTCAATGATCCCAAGCGATTCACCAAATACAGGTGAGCAAAATG---------------------T---------------TTTTTTCACGGTCAACTTTACATACAT---------------ATATGTACATATACACACACATATAAATCATTTGAAAGCTACTTTCTATTACATTTACATAAGTAAGC--------------------------------------------------------------------------------------------TT----GTGAGTGTGTGTATTTATGTATGTGTGTGGAT---ATGCTGGAATTTATT-------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....TTAAGGATCTCTTTGTCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1
.........................ATCCCAAGCGATTCACCAAATA...........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0

droWil2

TTCACACAAA-CA----------------------------------------------------------------------------C------A-----------------------------------CAC------ACACACACACACACACACACATATGTA---------------TGTCTACTACCCTTATGTATATAAACGAAATGTGCATATTTATTTATGTATATATTCTTGTATATATATATATCTGAAT--------------------------------------------------------------------------------ATATATACATATATTTGA---------------------A------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................ATGTA---------------TGTCTACTACCCTTA....................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0

dp5

TTACACACATACAGCTAC------------------------------------------------------------------------------------------------------------------TACACACACACACACACACACACACACACAT---------------------------------------------------------------------------------------------ACAGACAGACAGACATCAAAATCGTTTTCACCTACATATGTATGTATGTATGC------ATGCATGCATGTATATATGTATATACTATATA-----------TAACACTATAGTCAATTATTGAAGTGT---------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................ACACACACACACACAT---------------------------------------------------------------------------------------------ACAGAC....................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................CACACACACACACACACAT---------------------------------------------------------------------------------------------AC........................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GTTATTAAAGATTTATTTGTTAACGATCCGAAGCGATTTTCAAAGTTCAGGTGAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............TTATTTGTTAACGATCCGAAGCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	1	0	0	0	0
............TTATTTGTTAACGATCCGAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.........GATTTATTTGTTAACGATCCGAAGCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.........GATTTATTTGTTAACGATCCGAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
..............ATTTGTTAACGATCCGAAGCGA......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........ATTTATTTGTTAACGATCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................GTTAACGATCCGAAGCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........ATTTATTTGTTAACGATCCGAAGCGA......................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0

droAna3

AAAATCAAGGACCTCTTCCAGAATGATGCCAAGCGGTTTTCCAAATACAGGTGGGTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................TGATGCCAAGCGGTTTTCCA...............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	1	0	0	0	0	3
AAAATCAAGGACCTCTTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..........ACCTCTTCCAGAATGATGCCAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................TCCAGAATGATGCCAAGCGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........CCTCTTCCAGAATGATGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................AGAATGATGCCAAGCGGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
..AATCAAGGACCTCTTCCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........GGACCTCTTCCAGAATGATGCCAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..............CTTCCAGAATGATGCCAAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
......AAGGACCTCTTCCAGAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..............CTTCCAGAATGATGCCAAGCGGTTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..........................TGCCAAGCGGTTTTCCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................TGATGCCAAGCGGTTTTCCAA..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.....................AATGATGCCAAGCGGTTTTCCA...............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................TGATGCCAAGCGGTTTTCCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
................TCCAGAATGATGCCAAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................TGATGCCAAGCGGTTTTCCAAATACA.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................TGATGCCAAGCGGTTTTCC................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.....................AATGATGCCAAGCGGTTTTCC................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................GAATGATGCCAAGCGGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0

droBip1

AAAATCAAGGACCTGTTCCAAAATGATGCCAAGCGGTTTTCCAAATACAGGTGGGTGAAAGG----------------------AGTCTC-----------------------------------------------------------------------------------------------------------------------------------CTTTTTTTTGGGGATATACATACA--------TACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AACATCAAAGATCTGTTCGTGAAGGACCCCAAGCGGTTCTCCAAATACAGGTGGGTTTTAGCTTTGTTAGATTACGAAATACGT---------------TTTTTTT------TAAGTTACGTGGGTAT-ACCTACAAGCGCGCATATCCACACGCAC-------------------------------------------------------------------------------------TCA--------AGTTTGGGTGTATGTAGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACATCAAGGACCTTTTTGTTAAGGATCCGAAAAGGTTTTCCAAATACAGGTGGGTTTATTG----------------------GGGTCGGTATTTTTCA-CACCCAGGGTTAAGGTTACGTATGTAGTACCC----------ACATACAC--GAGC-------------------------------------------------------------------------------------ATA--------CTCGTTTGTGTATCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACATTAAGGACCTGTTCGTGAAGGACCCCAAGAGGTTCTCCAAATACAGGTGGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACATCAAGGACCTGTTCGTGAAGGATTCCAAAAGGTTCTCCAAATACAGGTGGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACATCAAGGACCTGTTCGTGAAGGACCCGAAGAGGTTCTCCAAATACAGGTGGGTTTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACATCAAGGATCTGTTTGTCAAGGATGCGAAGAGGTTCTCCAAATACAGGTGGGTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AACATCAAGGATCTGTTCGTAAAGGACCCGAAAAGATTCTCCAAATACAGGTGGGTTTATCC----------------------AGAGAT------TTCGTCTACAAGGGTTAGAGTTACGTATGTAGCAACC----------AC-------------------------------------------------------------------------------------------ATACATACA--------AACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AACATCAAGGACCTGTTCGTGAAGGATTCCAAGAGATTCTCAAAATACAGGTGGGTTTTTGT----------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......AAGGACCTGTTCGTGAAGGATTCC............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	112.00	112	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	53	35	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AAGGACCTGTTCGTGAAGGATTC.............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	29.00	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	5	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................AAGAGATTCTCAAAATACAGCC......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGGACCTGTTCGTGAAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGTGAAGGATTCCAAGAGATTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGTGAAGGATTCCAAGAGATTCTCA................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATCAAGGACCTGTTCGTGAAGGATTCA............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CTGTTCGTGAAGGATTCC............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AAGGATTCCAAGAGATC....................................................................................................................................................................................................................................................................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AACATCAAGGACCTGTTCGTGAAGGACTCCAAGAGATTCTCAAAATACAGGTGGGTTTTTGT----------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........GGACCTGTTCGTGAAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GGACCTGTTCGTGAAGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ACCTGTTCGTGAAGGACTC.............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGTGAAGGACTCCAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AGGACTCCAAGAGATTCTC.................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGTGAAGGACTCCAAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AAGGACCTGTTCGTGAAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GACCTGTTCGTGAAGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GTTCGTGAAGGACTCCAAGAGATTCTCA................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GTTCGTGAAGGACTCCAAGAGATTCTC.................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TCGTGAAGGACTCCAAGAGATTCTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTGAAGGACTCCAAGAGATTC...................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GTTCGTGAAGGACTCCAAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATCAAGGACCTGTTCGTGAAGGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TCGTGAAGGACTCCAAGAGATTC...................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CATCAAGGACCTGTTCGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACTCCAAGAGATTCTCAAAATACAGCCT.....................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ACATCAAGGACCTGTTCGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGAAGGACTCCAAGAGATTCTCA................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGAAGGACTCCAAGAGATTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGGACCTGTTCGTGAAGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TCGTGAAGGACTCCAAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGTGAAGGACTCCAAGAGATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GGACCTGTTCGTGAAGGACTCC............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CATCAAGGACCTGTTCGTGAAGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AACATCAAGGACCTGTTTGTGAAGGACTCCAAGAGATTCTCAAAATACAGGTGGGTTTTTGT----------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....TCAAGGACCTGTTTGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0
................TTGTGAAGGACTCCAAGAGATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
..............GTTTGTGAAGGACTCCAAGAGATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
.....CAAGGACCTGTTTGTGAAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
......................AGGACTCCAAGAGATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
AACATCAAGGACCTGTTTGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
....................GAAGGACTCCAAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
....TCAAGGACCTGTTTGTGAAGGACTC.............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
..............GTTTGTGAAGGACTCCAAGAGATTC...................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
.........GACCTGTTTGTGAAGGACTCCAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..CATCAAGGACCTGTTTGTGAAGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
................TTGTGAAGGACTCCAAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
............CTGTTTGTGAAGGACTCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0

droYak3

AACATCAAGGACCTGTTCGTAAAGGATGCCAAGAGATTCTCAAAATACAGGTGGGTTTTTCT----------------------GGCGAT------TTCACCTCCGAGGGTGGAAGTTACGTATGTAGTTCCA----------TTACACAC-------------------------------------------------------------------------------------ATACATACA--------CTCATTTGTGTATCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................GTAAAGGATGCCAAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
..............GTTCGTAAAGGATGCCAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..CATCAAGGACCTGTTCGTAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....CAAGGACCTGTTCGTAAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................GTAAAGGATGCCAAGAGATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................ATACATACA--------CTCATTTGTGT..................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...ATCAAGGACCTGTTCGTAAAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........GACCTGTTCGTAAAGGATGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................CGTAAAGGATGCCAAGAGATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....CAAGGACCTGTTCGTAAAGGATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..CATCAAGGACCTGTTCGTAAAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........GGACCTGTTCGTAAAGGATGCC............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
................TCGTAAAGGATGCCAAGAGATTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................CGTAAAGGATGCCAAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................GTAAAGGATGCCAAGAGATTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................CGTAAAGGATGCCAAGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....CAAGGACCTGTTCGTAAAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................ACCTCCGAGGGTGGAAGTTACGT................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....TCAAGGACCTGTTCGTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......AGGACCTGTTCGTAAAGGATGCC............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................TCGTAAAGGATGCCAAGAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................CGTAAAGGATGCCAAGAGATTC...................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..CATCAAGGACCTGTTCGTAAAGGATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................AAGGATGCCAAGAGATTCTCA................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....CAAGGACCTGTTCGTAAAGGATGCC............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.ACATCAAGGACCTGTTCGTAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...ATCAAGGACCTGTTCGTAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................CGTAAAGGATGCCAAGAGATTCTCA................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........GGACCTGTTCGTAAAGGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AACATCAAGGACCTGTTCGTGAAGGACTCCAAGAGGTTCTCAAAATACAGGTGGGTTTTTAT----------------------AGCGAT------TTCGCCCCCGATGGTGGAAGTTACGTATGTAGTTCCC----------AC-------------------------------------------------------------------------------------------ATACATACA--------CTCATTTGTGTATCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........GACCTGTTCGTGAAGGACTCCAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	3	0	0	0	3	0	0
.........GACCTGTTCGTGAAGGACTCCAAGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	5.00	5	0	0	0	0	5	0	0
..................GTGAAGGACTCCAAGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	5	0	0
...ATCAAGGACCTGTTCGTGAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	1	0	0	0	2	0	0
..CATCAAGGACCTGTTCGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	1	0	0
...ATCAAGGACCTGTTCGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	1	1	0
AACATCAAGGACCTGTTCGTGAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	2	0	0
......AAGGACCTGTTCGTGAAGGACTCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........CCTGTTCGTGAAGGACTCCAAGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..............GTTCGTGAAGGACTCCAAGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.....CAAGGACCTGTTCGTGAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..............GTTCGTGAAGGACTCCAAGAGGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
AACATCAAGGACCTGTTCGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...............TTCGTGAAGGACTCCAAGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.ACATCAAGGACCTGTTCGTGAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
AACATCAAGGACCTGTTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
......AAGGACCTGTTCGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
........GGACCTGTTCGTGAAGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...............TTCGTGAAGGACTCCAAGAGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
AACATCAAGGACCTGTTCGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
....TCAAGGACCTGTTCGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......AAGGACCTGTTCGTGAAGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.........GACCTGTTCGTGAAGGACTCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.......AGGACCTGTTCGTGAAGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.................CGTGAAGGACTCCAAGAGGTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.........GACCTGTTCGTGAAGGACTCCAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
..CATCAAGGACCTGTTCGTGAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...................TGAAGGACTCCAAGAGGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.......................GGACTCCAAGAGGTTCTCAAAATACA.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.........GACCTGTTCGTGAAGGACTCC............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.........GACCTGTTCGTGAAGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
........................GACTCCAAGAGGTTCTCAAAATACAGT.......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
.ACATCAAGGACCTGTTCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.ACATCAAGGACCTGTTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...............................AGAGGTTCTCAAAATACAGTC......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..........ACCTGTTCGTGAAGGACTCCAAGAGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.....CAAGGACCTGTTCGTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0

dmo_1133

scaffold_6496:13706838-13706988 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.9	-24.7	-24.7