dmo_1109

CDS [Dmoj\GI19027-cds]; exon [dmoj_GLEANR_3963:4]; exon [dmoj_GLEANR_3963:5]; CDS [Dmoj\GI19027-cds]; intron [Dmoj\GI19027-in]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-
(CTG)n	Simple_repeat	Simple_repeat	+
R1_DPs	LINE	R1	+

##################################################---------------------------------------------------------------------------################################################## AGGCAACAGCGGTGGCGGTGGCGGTGGCGGCACGACCAATGCAACTGGCAACAATAGCAATAACAACAGTAACAACAACAACAGCAGCAGTAACAATAACAACAACAACAACAACAACAATGCCGGCAATGGGCATCCCTTTTCGTTTGCATCGCCGACAGCGCCAAGCGCCAAA ************************************************....................................(((...............................)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V049 head	M060 embryo
....AACACCGGTGGCGAAGGCGG.......................................................................................................................................................	20	3	7	4.86	34	14	20	0	0
.....ACACCGGTGGCGAAGGCGG.......................................................................................................................................................	19	3	20	0.80	16	11	4	1	0
......................GGTGACGGCACGACCACGGCAA...................................................................................................................................	22	3	2	0.50	1	1	0	0	0
......................GGTGACGGCACGACCACGGCAAC..................................................................................................................................	23	3	2	0.50	1	1	0	0	0
....AACACCGGTGGCGAAGGCG........................................................................................................................................................	19	3	20	0.15	3	0	0	3	0
.....ACAGTGGTGGAGGCGGCGGTGGCGGC................................................................................................................................................	26	3	10	0.10	1	0	1	0	0
......................................................................AACAACAACAACAGCAGCAG.....................................................................................	20	0	20	0.05	1	0	0	0	1

TCCGTTGTCGCCACCGCCACCGCCACCGCCGTGCTGGTTACGTTGACCGTTGTTATCGTTATTGTTGTCATTGTTGTTGTTGTCGTCGTCATTGTTATTGTTGTTGTTGTTGTTGTTGTTACGGCCGTTACCCGTAGGGAAAAGCAAACGTAGCGGCTGTCGCGGTTCGCGGTTT ************************************************....................................(((...............................)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	M046 female body
...................................................................................CGTCGTCATTGCTACTGTTC........................................................................	20	3	20	0.05	1	1	0
...........................................................TATTGTTGTCATTATTGTTGT...............................................................................................	21	1	20	0.05	1	0	1
..................................................................................TCGGCGTCATTGTTAGTGTTC........................................................................	21	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:12127437-12127611 -	dmo_1109	AGGC--AA--------------------------------CAGCGGTGG------CGGTGGCG------------------GTGG--CGGC--------------ACGACCA------------ATGCAACTGG---------CA---ACAATAGCAATAAC---------------------------------------AACAGT------AACA---ACAACAACAGCAG---------------------------CA---GT---A---------------------ACAATAACAACAACAACAACAAC------------------A-----ACAAT---------GCCGG-------------------------------------------------------------------------CAAT-GGGCATCCCTTTTCGT-----TT-GCA------TCGCCGACAGCGCCAA------------------GCGCCAA---A
droVir3	scaffold_12875:18475970-18476153 -		GGCC--AG--------------------------------CAGCGGTAC------AGGTGGAG------------------GCAC--T-----------------GCC------------------------------------GCC---AACAACAACAACAACAGCAGCAACAACAACAGCAATGCGGCTGGAAATGCTGGTGGC------AACA---ACAACAAC------------------------------------------AACAGCA------------------------GCAGCAGCAACAAC------------------A-----ACAAT---------GCCGG-------------------------------------------------------------------------CAAT-GGACATCCCTTCTCGT-----TT-GCA------TCGCCGACAGCGCCGA------------------GCGCCAA---A
droGri2	scaffold_15245:4590067-4590211 -		AGGA--GG--------------------------------TGCTGGCGG------CAAT---A---------------GCAGTGG--TGTT-----------------------A------------------------------------ACAACAACAAC---------------AACAAT------------------AAC---------AATAGC------AAC------------------------------------------AACAACA------------------------ACAACAACAACAAT------------------A-----ACGGT---------GCCGG-------------------------------------------------------------------------CAAT-GGTCATCCCTTTTCAT-----TT-GCA------TCGCCAACAGCGCCGA--------------GCA-GCACCAA---A
droWil2	scf2_1100000004540:2680742-2680919 -		CGGC--AG--------------------------------CAGCAGCAG------CTGTGGCAGCGAATGCGGC---------AG--CGG-----C------------AGCAGTTGC-----------AGCCA---------------------------------------------------ATACCAATGCAAATAACACTAGC------AACA---ACAACAACAGCAGCAGTAA---------------------------------------TAATAC---------------CACCAGCAACAACAAC------------------A-----ACAATACCAACAATGGC--A--------------------------------------GCAC----------------------------------------------ATCAA-----CG-GCA------ACAGCAGCAGCAACAG------------------GAGCC-A---A
dp5	2:9521002-9521190 +		TGGC--AA--------------------------------CAGCAGCAA------CAATT-CG------------------ATGC--TGCC--------------ACCTGCT------------GTGCAACAGCAGAGCTCC--AGCG---ATAGTAACAAC---------------------------------------ACCAGC------AACA---ACAACAACAGCAACAACACGAATCCA------------AGCA------------------------------ACAATAATAACAATAACAACAAC------------------A---TC-----A------AC--TACCAATT---------------------------------------------------------------------GGC-CGCCATTTCCGCCA--------T-ATA------CCAC---CAGCATCAG------------------GTGAAAG---A
droPer2	scaffold_5899:1346-1506 -		GGGC--AACA--------------------GCTACAA---TCCCTT--T------AC---GCA----------------------------------------------GCAGGTCC---------------------------TGGCACAGCAGCAACAGCAGCAGC---------------------------------------------AGCA---AC---ATCAGC---------------------------AGCAGCAGC---A---------------------GCAACAACAACAGCAGCAACAAC------------------A--------------------------GGC---T--ATGCAA-----------------TTCCAT---------------------------------------GGCAATCC----------------CTTTGCCAACACTGGCAGCAGCCA------------------CTGGGAG---A
droAna3	scaffold_12929:976907-977083 +		G--CA--A--------------------------------CAGCAGCAG------CAGCAACA------------------GCAA--CAGT--TGCAACAAC------AGCTGCAAC---------------------AGC------AACAGCAGCAACTGCAACAAC---------------------------------------------AGCA---AC---TCCAGC---------------------------AGCAGCAGC---A---------------------GCAGCA------GCAGCAAC---------------------AACAGC-----AACA---GC-----A-A--A-TG------------GTGGTGCCACCAGCTCCAC------------------------------------------------CACAAC-----CT-GCA------CCACCGCCACCGCCCA-------------------AACCAA---A
droBip1	scf7180000395895:8352-8514 +		CAAC--AA--------------------------------CAGCAGTAG------TAGCAGCC------------------ACAA--CAATAC-ACCA-AAC--------------------------GGTGC---------------ACAACAACAACAACAACAGC---------------------------------------------ATCA---AC---AACATC---------AACAAC---ATC------A---------------------------------GCAACA------ACAACAAC---------------------AACATC-----ATCA---TC-----A-A--A-GG------------G--TTGCCAGCAGCA-----------------------------------------------ACCAGCAGCAG-----CT-GCA------ACAGCAACAGCAAC--------------------------A---A
droKik1	scf7180000302621:77330-77493 +		G--CA--G--------------------------------CAGCAACAA------CACAGGCA------------------GCAG--CAGC--------------ACCAGCAGTAAT---------------------AGCAGCA---GCAGTAGCAACAAC---------------------------------------AAC---------AACAACAACAACAGCAGCAG---------------------------C---AGC---AG---------------------CAGTAGCAGCGGCAGCAACAAT------------------A-----------------ACAC--------------ACCCAACG--G--TGCGCAGCA--------------------------------------------------GC----AGCAT-----TT-GCA------GCAGCAGCAGCAGC--------------------------A---A
droFic1	scf7180000454077:30103-30279 -		AG-CA--G--------------------------------CAGCAGCAG------CAGCAGGA------------------GCAA--CATT--TGCAGCTAC------AGTTGCAACACCAACAACACCACCAC---------CACCA---CCAGCAACAAC------------------AAC------------------AGC---------AACAGCAACAACATCAGCAA---------------------------C---ATC---AA---------------------CAACA---ACAGCCACAGCAAC------------------A-----ACA---------ACACT----------------------------------------AT-------------------------------------------------CACAA-----CT-ACA------GCGGCAATAGCAACAA------------------TTACAAA---A
droEle1	scf7180000491013:407798-407974 -		AA-CG--G--------------------------------CGGCAGTAG------CAGCGGCA------------------GCAT--CAAC-----ATC------GACATCAGCAAC---------------------------------AACAACAAC------------------------------------------------------AGCAGC------AGCAGA------------------GCC------AGCA---AC---------------------------A---------AAAACAAC---------------------C----------------------------------------G--TA------------------ACACAACAAACCCAACAACAACAACAACAGCCAACAAT-GTGAATTGCTTTTTTTTTTAATTGTAA------TTGAAAACCGTATCAA------------------GTGCATA---A
droRho1	scf7180000778060:40840-40994 -		GGGC--AA--------------------------------CCTCATTAG------CGCTGGCAGCA---------------CCGGAC-------CCAA-GGC--------------------------GGCCGCCAATCGCA--ACCG---AAAGCAACAGC---------------------------------------------AACTGCAGCAGCAAC------------------------AGCAAC------AGCA---ACA------------------------------------ACAACAGC--------------------------------AGCA---AC-----A-AGC---------------------------------------------------------------------AGC-CGGCATTCCTTCCCAG---------CA------GCAGCAACAGCAGC----------------------CAAAC---G
droBia1	scf7180000302408:3974405-3974567 -		GG-CA--A--------------------------------CCTCATTAG------CGCTGGCAGCG---------------CGGGAC-------CCAA-GGC--------------------------GGCTGCAAACCGCA--ACCG---AAAGCAGCAGC---------------------------------------------AACAGCAGCAGCAAC------------------------AACAGC------AGCA---GCATCAACAGCA------------------------GCAACAGCAACAAC------------------A--------------------------GGC---------------------------------------------------------------------CGC-CGGCATTCCTTCCCAG---------CA------GCAACAACAGCAGC----------------------CAAAC---G
droTak1	scf7180000415241:12241-12413 +		G--CA--A--------------------------------CAGCAACAA------CCACAACA------------------ACAG--CAAT--------------ACAACCAACAAC---------------------AGCA------------------A---------------------------------------------------------------TACAATCAGCAACAGCAATACA------------ACCA------------------------------ACAACA------GCAACAGCAACACTATCACCAGCAACAACA-----ACAACAA---------CAG-------------------------------------------------------------------------CAATCGAGCACCACTCGCCATGTC-AGCGCCC------CCGTGAACTCCCCCAA------------------GCCCCCG---A
droEug1	scf7180000409509:444140-444313 +		GG-CA--A--------------------------------CTGGAGCAG------TTCGAGCAGCAGCCACAGC---------AG--GAG-----CAACAACAACTTCATCTGCAAC---------------------------------AACAACAACAGCAGCAGC---------------------------------------------AGCA---AC---AGCATC---------------------------AACTGTTG------------CAACATCA------GCAACAACAACAACAACAAC--------------------------------AACAACAACACT----------------------------------------AT-------------------------------------------------CACAA-----CT-ACA------GCGCCAATAGCAATAA------------------TTACAAA---A
dm3	chrX:7540799-7540950 +		G--CAACA--TGTGGCCAGTTCGGCGGAGGACGATGATTGCGCCAACAACAATACAA---ATA----------------------------------------------CCAGCA------------------------------------ATAACAACAAT---------------------------------------ACCAGC------AACA---CCGCCACCAGCAA------------------CACGAACAACAACAAT---AA---------------------TAATA------ACAGCA------------------------------------------------------------------------------------------------------------------------------------------------------GCA------GCGGCAACAGCGAGAA------------------GCGCAAG---A
droSim2	2r:10141479-10141633 -		CAGA--AG--------------------------------CGGCATCAT------AC---GCA---------GCAGCAGCAACAG--CAAC--------------ACA------------------------------------CCCA---ACAGCAGCAGC---------------------------------------------AGCAGCAGCAGCAAC------------------------ATCAGC------AGCA---GCATCAACAGCA------------------------GCAGCAGCAACATC------------------A-----GCAAC---------ACCAG-----AATGGCGCCC-T--------------CTG--------------------------------------------------------TT-----CGCC-GCT------CC-TCTGCAGCGCC--------------------------G---A
droSec2	scaffold_0:16974168-16974339 +		CGGC--AG--------------------------------CGAGTGCTG------C---GGCA---------------GCGGTGG--GCGC--------------ACCCCCC------------GT-----------TCCCA--ACGG---ATCGCTGCAGC---------------------------------------------AGTCGCAGCAGCAAC------------------------AGCAGC------AGCA---GCAGCAACAGCA------------------------GCAGCAGCAGCAAC------------------A-----GAT---------GCAC--------A-TGGCGGCC-G--CG-------TCGCA--------------------------------------------------ACAATTTTTGG-----CC-GCC-------------CAGCAGCAG------------------GCGCAAAATGC
droYak3	X:18247305-18247472 +		G--CA--A--------------------------------CAACAGCAG------CAGCAGCA------------------GCAG--CAAC--------------ATCAACA---------------------------------------GCAGCAGCAGCAGCAAC---------------------------------------------AGCAGC------ATCATC------------------AGC------AGCA---AC---A---GCAACAACACCACCAGCAACAGCA------GCAGCAGC--------------------------------ATCATCATCAGC--A------AT------------T--TGGCCAGCAGCA------------------------------------------------------------------------------------GCATCCACATGCCCATCACCTGCACCACCATG---C
droEre2	scaffold_4690:14316438-14316593 -		G--CA--A--------------------------------CAGCAGCAG------CAGCAACA------------------GTTG--CA--------------------GCAGTTAC---------------------------------AGCAACAACAGCAGCTAC---------------------------------------------AGCA---GC---AGCAGCAA------------------CAGCAGCAGCAGCAGC---AA---------------------CAACA---ACAGCAGCAGC--------------------------------AACA---GC-----A-ATC---------------------------------------------------------------------GAT-GGGTGATCCTGCTGAT---C-AT-GCA------ACATCGACGTCAGC----------------------GGGAG---C

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AGGC--AA--------------------------------CAGCGGTGG------CGGTGGCG------------------GTGG--CGGC--------------ACGACCA------------ATGCAACTGG---------CA---ACAATAGCAATAAC---------------------------------------AACAGT------AACA---ACAACAACAGCAG---------------------------CA---GT---A---------------------ACAATAACAACAACAACAACAAC------------------A-----ACAAT---------GCCGG-------------------------------------------------------------------------CAAT-GGGCATCCCTTTTCGT-----TT-GCA------TCGCCGACAGCGCCAA------------------GCGCCAA---A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................AACA---ACAACAACAGCAG---------------------------CA---G........................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0

droVir3

GGCC--AG--------------------------------CAGCGGTAC------AGGTGGAG------------------GCAC--T-----------------GCC------------------------------------GCC---AACAACAACAACAACAGCAGCAACAACAACAGCAATGCGGCTGGAAATGCTGGTGGC------AACA---ACAACAAC------------------------------------------AACAGCA------------------------GCAGCAGCAACAAC------------------A-----ACAAT---------GCCGG-------------------------------------------------------------------------CAAT-GGACATCCCTTCTCGT-----TT-GCA------TCGCCGACAGCGCCGA------------------GCGCCAA---A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................................................................................................CAAT---------GCCGG-------------------------------------------------------------------------CAAT-GGACATC.......................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................GTAC------AGGTGGAG------------------GCAC--T-----------------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AACAACAACAGCAATGCGGC...................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT-----TT-GCA------TCGCCGACAGCG.................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GGTAC------AGGTGGAG------------------GCAC--T-----------------GCC------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TCGCCGACAGCGCCGA------------------GCGCC......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................ACAACAGCAGCAACAACAACAGCAAT........................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CAACAACAACAGCAATGCG.....................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................AACAGCA------------------------GCAGCAGCAACAAC------------------A-----ACAAT---------.................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AGCAGCAACAAC------------------A-----ACAAT---------GC...............................................................................................................................................................	20	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................AACAGCAGCAACAACAACAGCA..........................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................CC---AACAACAACAACAACAGCAGCAACT...................................................................................................................................................................................................................................................................................................................................................	27	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GTGGC------AACA---ACAACAAC------------------------------------------AACA................................................................................................................................................................................................................................................	21	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................C------AACA---ACAACAAC------------------------------------------AACAGCA------------------------GC...................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................AACAGCA------------------------GCAGCAGCAACAAC------------------A-----AC.............................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................CAACAACAACAGCAGCAAC....................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CAAC------------------------------------------AACAGCA------------------------GCAGCAGCAA...........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AACA---ACAACAAC------------------------------------------AACAGCA------------------------GC...................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CA------------------------GCAGCAGCAACAAC------------------A-----ACAAT---------.................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ACAACAAC------------------------------------------AACAGCA------------------------GCAGCA...............................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AAC------------------------------------------AACAGCA------------------------GCAGCAGCAACAAC------------------A-----AC.............................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACAACAACAACAACAGCAGCAACAACA................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AACAACAACAACAACAGCAGCAA.....................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................ACAACAACAACAGCAGCAACAACAACAGC...........................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................C------AACA---ACAACAAC------------------------------------------AACAGCA------------------------.....................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................C---AACAACAACAACAACAGCAG........................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CAACAGCAGCAACAACAACAGC...........................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AACAAC------------------------------------------AACAGCA------------------------GCAGCAGCAACAAC------------------.....................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................ACA---ACAACAAC------------------------------------------AACAGCA------------------------GC...................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AGCAGCAACAACAACAGC...........................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AGCAGCAACAAC------------------A-----ACAAT---------G................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................C---AACAACAACAACAACAGCAGCAACA...................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AGGA--GG--------------------------------TGCTGGCGG------CAAT---A---------------GCAGTGG--TGTT-----------------------A------------------------------------ACAACAACAAC---------------AACAAT------------------AAC---------AATAGC------AAC------------------------------------------AACAACA------------------------ACAACAACAACAAT------------------A-----ACGGT---------GCCGG-------------------------------------------------------------------------CAAT-GGTCATCCCTTTTCAT-----TT-GCA------TCGCCAACAGCGCCGA--------------GCA-GCACCAA---A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CGGC--AG--------------------------------CAGCAGCAG------CTGTGGCAGCGAATGCGGC---------AG--CGG-----C------------AGCAGTTGC-----------AGCCA---------------------------------------------------ATACCAATGCAAATAACACTAGC------AACA---ACAACAACAGCAGCAGTAA---------------------------------------TAATAC---------------CACCAGCAACAACAAC------------------A-----ACAATACCAACAATGGC--A--------------------------------------GCAC----------------------------------------------ATCAA-----CG-GCA------ACAGCAGCAGCAACAG------------------GAGCC-A---A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................................................................................................TACCAACAATGGC--A--------------------------------------GCAC----------------------------------------------ATCCC-----.........................................................	23	1	1.00	1	0	0	0	0	1
..............................................................AGCGAATGCGGC---------AG--CGG-----C------------AGCAGTT...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAG------------------GAGC.......	18	9	0.22	2	0	0	0	2	0
........................................................................................................................................................................................................................A---ACAACAACAGCAGCAGTA....................................................................................................................................................................................................................................................................................	19	10	0.20	2	0	0	0	2	0
......................................................................................................................................................................................................................ACA---ACAACAACAGCAGCAGTA....................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	1	0
.....................................................................................................................................................................................................................AACA---ACAACAACAGCAGCAGTA....................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0
..............................................................................................................................................................................................................C------AACA---ACAACAACAGCAGCAGT.....................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	1	0	0
............................................................................................................................................................................................................AGC------AACA---ACAACAACAGCAGCAGTCT---------------------------------------............................................................................................................................................................................................................................................	26	13	0.08	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................AC---------------CACCAGCAACAACAAC------------------A-----...............................................................................................................................................................................	19	14	0.07	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................AC---------------CACCAGCAACAACAAC------------------.....................................................................................................................................................................................	18	18	0.06	1	0	0	0	1	0

dp5

TGGC--AA--------------------------------CAGCAGCAA------CAATT-CG------------------ATGC--TGCC--------------ACCTGCT------------GTGCAACAGCAGAGCTCC--AGCG---ATAGTAACAAC---------------------------------------ACCAGC------AACA---ACAACAACAGCAACAACACGAATCCA------------AGCA------------------------------ACAATAATAACAATAACAACAAC------------------A---TC-----A------AC--TACCAATT---------------------------------------------------------------------GGC-CGCCATTTCCGCCA--------T-ATA------CCAC---CAGCATCAG------------------GTGAAAG---A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................GCAACAACACGAATCCA------------AG..............................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................CG------------------ATGC--TGCC--------------ACCTGCT------------GTGCAACA..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......AA--------------------------------CAGCAGCAA------CAATT-CG------------------ATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AAC------------------A---TC-----A------AC--TACCAATT---------------------------------------------------------------------GGC-..............................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................TAACAAC---------------------------------------ACCAGC------AACA---ACAACA................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................ACCAGC------AACA---ACAACAACAGCAA.........................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................AACAAC---------------------------------------ACCAGC------AACA---ACAACA................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................A---ACAACAACAGCAACAACAC...................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GC------AACA---ACAACAACAGCAACAA......................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................C------AACA---ACAACAACAGCAACAA......................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAGC------AACA---ACAACAACAGCAACA.......................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGGC--AACA--------------------GCTACAA---TCCCTT--T------AC---GCA----------------------------------------------GCAGGTCC---------------------------TGGCACAGCAGCAACAGCAGCAGC---------------------------------------------AGCA---AC---ATCAGC---------------------------AGCAGCAGC---A---------------------GCAACAACAACAGCAGCAACAAC------------------A--------------------------GGC---T--ATGCAA-----------------TTCCAT---------------------------------------GGCAATCC----------------CTTTGCCAACACTGGCAGCAGCCA------------------CTGGGAG---A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACTGGCAGCAGCCA------------------CTGGGA.....	24	2	0.50	1	0	1	0	0	0	0
.....................................................................................................................................................................AGC---------------------------------------------AGCA---AC---ATCAGC---------------------------AGCAGCAGC---A---------------------GC............................................................................................................................................................................................................................	27	6	0.17	1	0	0	1	0	0	0
.........................................................................................................................................................AGCAACAGCAGCAGC---------------------------------------------AGCA---AC---A................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0
.....................................................................................................................................................................................................................AGCA---AC---ATCAGC---------------------------AGCAGCAGC---A---------------------..............................................................................................................................................................................................................................	22	17	0.06	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAACAAC------------------A--------------------------..........................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................CAGC---A---------------------GCAACAACAACAGCAGC.............................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................A---------------------GCAACAACAACAGCAGCAACA.........................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................CAGCAGC---A---------------------GCAACAACAACAGCAGCA............................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0

droAna3

G--CA--A--------------------------------CAGCAGCAG------CAGCAACA------------------GCAA--CAGT--TGCAACAAC------AGCTGCAAC---------------------AGC------AACAGCAGCAACTGCAACAAC---------------------------------------------AGCA---AC---TCCAGC---------------------------AGCAGCAGC---A---------------------GCAGCA------GCAGCAAC---------------------AACAGC-----AACA---GC-----A-A--A-TG------------GTGGTGCCACCAGCTCCAC------------------------------------------------CACAAC-----CT-GCA------CCACCGCCACCGCCCA-------------------AACCAA---A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................GCAACTGCAACAAC---------------------------------------------AGCA---AC---TCCAGC---------------------------................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................AGCAAC---------------------AACAGC-----AACA---GC-----A-A--A-TG------------GT.....................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................AACAAC---------------------------------------------AGCA---AC---TCCAGC---------------------------AGCAGC..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.............................................GCAG------CAGCAACA------------------GCAA--CAGT--TGCAACAAC------......................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
...........................................CAGCAG------CAGCAACA------------------GCAA--CAGT--TGCAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................ACA---GC-----A-A--A-TG------------GTGGTGCCACC............................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................GCAACAAC------AGCTGCAAC---------------------AGC------...............................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
.................................................................................GCAA--CAGT--TGCAACAAC------AGC...................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
....A--A--------------------------------CAGCAGCAG------CAGCAACA------------------GCAA--CAGT--.....................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	1
.......A--------------------------------CAGCAGCAG------CAGCAACA------------------GCAA--CAGT--.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
......................................................................................................................................................................................................................GCA---AC---TCCAGC---------------------------AGCAGCA.........................................................................................................................................................................................................................................................	18	10	0.20	2	2	0	0	0	0	0
....A--A--------------------------------CAGCAGCAG------CAGCAACA------------------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	2	1	0	0	0
..........................................................................................................................................AGC------AACAGCAGCAACTGCA...............................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................AGCA---AC---TCCAGC---------------------------AGCAGCA.........................................................................................................................................................................................................................................................	19	7	0.14	1	1	0	0	0	0	0
........................................................................................................................................................................................................................A---AC---TCCAGC---------------------------AGCAGCAGC---A---------------------GCA...........................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	1
G--CA--A--------------------------------CAGCAGCAG------CAGCAACA------------------GCAA--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	2
........................................................................................................................................................................................................................A---AC---TCCAGC---------------------------AGCAGCAGC---A---------------------..............................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................A---------------------GCAGCA------GCAGCAAC---------------------AACAGC-----A.........................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
G--CA--A--------------------------------CAGCAGCAG------CAGCAACA------------------GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
...CA--A--------------------------------CAGCAGCAG------CAGCAACA------------------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
.........................................AGCAGCAG------CAGCAACA------------------GCAA--CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................C---TCCAGC---------------------------AGCAGCAGC---A---------------------GCAGCA------G.................................................................................................................................................................................................................	24	10	0.10	1	1	0	0	0	0	0
............................................................................................................................................................................................................................AC---TCCAGC---------------------------AGCAGCAGC---A---------------------GC............................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	1
.................................................................................................................CAAC---------------------AGC------AACAGCAGCAACT..................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................C---TCCAGC---------------------------AGCAGCAGC---A---------------------GCAGCA------..................................................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................C---A---------------------GCAGCA------GCAGCAAC---------------------AACAGC-----AACA---G..................................................................................................................................................................	27	17	0.06	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................A---------------------GCAGCA------GCAGCAAC---------------------AACAGC-----AACA---...................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................A------GCAGCAAC---------------------AACAGC-----AACA---GC-----A-..........................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................A---------------------GCAGCA------GCAGCAAC---------------------AACAGC-----AAC.......................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................C---------------------------AGCAGCAGC---A---------------------GCAGCA------GCAGCAAC---------------------.....................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.......A--------------------------------CAGCAGCAG------CAGCAACA------------------GCAA--CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................AGCAGCAGC---A---------------------GCAGCA------GCAGCAAC---------------------.....................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
....A--A--------------------------------CAGCAGCAG------CAGCAACA------------------GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.......A--------------------------------CAGCAGCAG------CAGCAACA------------------GCAA--...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GCA------GCAGCAAC---------------------AACAGC-----AAC.......................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CAGC---A---------------------GCAGCA------GCAGCAAC---------------------AACAGC-----..........................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
....A--A--------------------------------CAGCAGCAG------CAGCAACA------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................GC---------------------------AGCAGCAGC---A---------------------GCAGCA------GCA...............................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................A------GCAGCAAC---------------------AACAGC-----AACA---GC-----............................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................AGC---A---------------------GCAGCA------GCAGCAAC---------------------AA...................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
........................................CAGCAGCAG------CAGCAACA------------------GCAA--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................GCAGCAAC---------------------AACAGC-----AACA---GC-----............................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................AGCA------GCAGCAAC---------------------AACAGC-----AACA---GC-----............................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.................................................................................................................CAAC---------------------AGC------AACAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droBip1

CAAC--AA--------------------------------CAGCAGTAG------TAGCAGCC------------------ACAA--CAATAC-ACCA-AAC--------------------------GGTGC---------------ACAACAACAACAACAACAGC---------------------------------------------ATCA---AC---AACATC---------AACAAC---ATC------A---------------------------------GCAACA------ACAACAAC---------------------AACATC-----ATCA---TC-----A-A--A-GG------------G--TTGCCAGCAGCA-----------------------------------------------ACCAGCAGCAG-----CT-GCA------ACAGCAACAGCAAC--------------------------A---A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

G--CA--G--------------------------------CAGCAACAA------CACAGGCA------------------GCAG--CAGC--------------ACCAGCAGTAAT---------------------AGCAGCA---GCAGTAGCAACAAC---------------------------------------AAC---------AACAACAACAACAGCAGCAG---------------------------C---AGC---AG---------------------CAGTAGCAGCGGCAGCAACAAT------------------A-----------------ACAC--------------ACCCAACG--G--TGCGCAGCA--------------------------------------------------GC----AGCAT-----TT-GCA------GCAGCAGCAGCAGC--------------------------A---A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AG-CA--G--------------------------------CAGCAGCAG------CAGCAGGA------------------GCAA--CATT--TGCAGCTAC------AGTTGCAACACCAACAACACCACCAC---------CACCA---CCAGCAACAAC------------------AAC------------------AGC---------AACAGCAACAACATCAGCAA---------------------------C---ATC---AA---------------------CAACA---ACAGCCACAGCAAC------------------A-----ACA---------ACACT----------------------------------------AT-------------------------------------------------CACAA-----CT-ACA------GCGGCAATAGCAACAA------------------TTACAAA---A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AA-CG--G--------------------------------CGGCAGTAG------CAGCGGCA------------------GCAT--CAAC-----ATC------GACATCAGCAAC---------------------------------AACAACAAC------------------------------------------------------AGCAGC------AGCAGA------------------GCC------AGCA---AC---------------------------A---------AAAACAAC---------------------C----------------------------------------G--TA------------------ACACAACAAACCCAACAACAACAACAACAGCCAACAAT-GTGAATTGCTTTTTTTTTTAATTGTAA------TTGAAAACCGTATCAA------------------GTGCATA---A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGGC--AA--------------------------------CCTCATTAG------CGCTGGCAGCA---------------CCGGAC-------CCAA-GGC--------------------------GGCCGCCAATCGCA--ACCG---AAAGCAACAGC---------------------------------------------AACTGCAGCAGCAAC------------------------AGCAAC------AGCA---ACA------------------------------------ACAACAGC--------------------------------AGCA---AC-----A-AGC---------------------------------------------------------------------AGC-CGGCATTCCTTCCCAG---------CA------GCAGCAACAGCAGC----------------------CAAAC---G	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GG-CA--A--------------------------------CCTCATTAG------CGCTGGCAGCG---------------CGGGAC-------CCAA-GGC--------------------------GGCTGCAAACCGCA--ACCG---AAAGCAGCAGC---------------------------------------------AACAGCAGCAGCAAC------------------------AACAGC------AGCA---GCATCAACAGCA------------------------GCAACAGCAACAAC------------------A--------------------------GGC---------------------------------------------------------------------CGC-CGGCATTCCTTCCCAG---------CA------GCAACAACAGCAGC----------------------CAAAC---G	Size	Hit Count	Total Norm	Total
No Reads

droTak1

G--CA--A--------------------------------CAGCAACAA------CCACAACA------------------ACAG--CAAT--------------ACAACCAACAAC---------------------AGCA------------------A---------------------------------------------------------------TACAATCAGCAACAGCAATACA------------ACCA------------------------------ACAACA------GCAACAGCAACACTATCACCAGCAACAACA-----ACAACAA---------CAG-------------------------------------------------------------------------CAATCGAGCACCACTCGCCATGTC-AGCGCCC------CCGTGAACTCCCCCAA------------------GCCCCCG---A	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GG-CA--A--------------------------------CTGGAGCAG------TTCGAGCAGCAGCCACAGC---------AG--GAG-----CAACAACAACTTCATCTGCAAC---------------------------------AACAACAACAGCAGCAGC---------------------------------------------AGCA---AC---AGCATC---------------------------AACTGTTG------------CAACATCA------GCAACAACAACAACAACAAC--------------------------------AACAACAACACT----------------------------------------AT-------------------------------------------------CACAA-----CT-ACA------GCGCCAATAGCAATAA------------------TTACAAA---A	Size	Hit Count	Total Norm	Total
No Reads

dm3

G--CAACA--TGTGGCCAGTTCGGCGGAGGACGATGATTGCGCCAACAACAATACAA---ATA----------------------------------------------CCAGCA------------------------------------ATAACAACAAT---------------------------------------ACCAGC------AACA---CCGCCACCAGCAA------------------CACGAACAACAACAAT---AA---------------------TAATA------ACAGCA------------------------------------------------------------------------------------------------------------------------------------------------------GCA------GCGGCAACAGCGAGAA------------------GCGCAAG---A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................AACAATACAA---ATA----------------------------------------------CCAGCA------------------------------------ATAACA.....................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACAGCGAGAA------------------GCGCAAG---A	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TGTGGCCAGTTCGGCGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AACA--TGTGGCCAGTTCGGCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GC------AACA---CCGCCACCAGCAA------------------CACGA..................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GATTGCGCCAACAACAATAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TTCGGCGGAGGACGATGATTGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................CAAT---AA---------------------TAATA------ACAGCA------------------------------------------------------------------------------------------------------------------------------------------------------GCA------GT...........................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AACA---CCGCCACCAGCAA------------------C......................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CGATGATTGCGCCAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......A--TGTGGCCAGTTCGGCGGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CA------------------------------------ATAACAACAAT---------------------------------------ACCAGC------AACA---CCG...................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAACAAT---AA---------------------TAATA------ACAGCA------------------------------------------------------------------------------------------------------------------------------------------------------GCA------GCG..........................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................A------ACAGCA------------------------------------------------------------------------------------------------------------------------------------------------------GCA------GCGGCAACAG...................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................ACAACAACAAT---AA---------------------TAATA------ACA...............................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................AACAACAACAAT---AA---------------------TAATA------A.................................................................................................................................................................................................................	20	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAGA--AG--------------------------------CGGCATCAT------AC---GCA---------GCAGCAGCAACAG--CAAC--------------ACA------------------------------------CCCA---ACAGCAGCAGC---------------------------------------------AGCAGCAGCAGCAAC------------------------ATCAGC------AGCA---GCATCAACAGCA------------------------GCAGCAGCAACATC------------------A-----GCAAC---------ACCAG-----AATGGCGCCC-T--------------CTG--------------------------------------------------------TT-----CGCC-GCT------CC-TCTGCAGCGCC--------------------------G---A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................GCA---------GCAGCAGCAACAG--CAAC--------------AC.......................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	1.14	8	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CTG--------------------------------------------------------TT-----CGCC-GCT------CC-TCTGCAGCGC................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CAG-----AATGGCGCCC-T--------------CTG--------------------------------------------------------TT-----CGCC-......................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................T--------------CTG--------------------------------------------------------TT-----CGCC-GCT------CC-TCT.......................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATC------------------A-----GCAAC---------ACCAG-----AATGGCGCCC-T--------------.............................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GCCC-T--------------CTG--------------------------------------------------------TT-----CGCC-GCT------CC-TCTGCA....................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................C---------------------------------------------AGCAGCAGCAGCAAC------------------------ATCAGC------................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................AACAGCA------------------------GCAGCAGCAACATC------------------.....................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................GCAAC------------------------ATCAGC------AGCA---GCA......................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CGGC--AG--------------------------------CGAGTGCTG------C---GGCA---------------GCGGTGG--GCGC--------------ACCCCCC------------GT-----------TCCCA--ACGG---ATCGCTGCAGC---------------------------------------------AGTCGCAGCAGCAAC------------------------AGCAGC------AGCA---GCAGCAACAGCA------------------------GCAGCAGCAGCAAC------------------A-----GAT---------GCAC--------A-TGGCGGCC-G--CG-------TCGCA--------------------------------------------------ACAATTTTTGG-----CC-GCC-------------CAGCAGCAG------------------GCGCAAAATGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................AGCAAC------------------A-----GAT---------GCAC--------A-TGGCGGC..............................................................................................................................................	22	1	1.00	1	1	0	0	0
...............................................TG------C---GGCA---------------GCGGTGG--GCGC--------------.........................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
.......G--------------------------------CGAGTGCTG------C---GGCA---------------GCGGTGG--GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................A-----GAT---------GCAC--------A-TGGCGGCC-G--CG-------TCGCA--------------------------------------------------.........................................................................	25	1	1.00	1	0	0	1	0
...............................................................................................................................................................AGC---------------------------------------------AGTCGCAGCAGCAAC------------------------AGCA........................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0
.................................................................................................................................................................................................................TCGCAGCAGCAAC------------------------AGCAGC------A...............................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	1
...............................................................................................................................................................................................................................................................................ACAGCA------------------------GCAGCAGCAGCAAC------------------A-----...............................................................................................................................................................................	21	20	0.05	1	0	0	1	0
........................................................................................................................................................................................................................................................CAGC------AGCA---GCAGCAACAGCA------------------------GC...................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0
.....................................................................................................................................................................................................................................................................A---GCAGCAACAGCA------------------------GCAGCAGCAGCAAC------------------A-----...............................................................................................................................................................................	28	20	0.05	1	0	0	1	0
.....................................................................................................................................................................................................................AGCAGCAAC------------------------AGCAGC------AGCA---GCAGCAACA................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0
..........................................................................................................................................................................................................................CAAC------------------------AGCAGC------AGCA---GCAGCAACAGC..............................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
............................................................................................................................................................................................................................AC------------------------AGCAGC------AGCA---GCAGCAACA................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0
.........................................................................................................................................................................................................................................................AGC------AGCA---GCAGCAACAGCA------------------------GCAGCAGCA............................................................................................................................................................................................................	28	20	0.05	1	0	0	0	1
...................................................................................................................................................................................................................................................................................CA------------------------GCAGCAGCAGCAAC------------------A-----GA.............................................................................................................................................................................	19	20	0.05	1	0	0	0	1
...................................................................................................................................................................................................................................................................GCA---GCAGCAACAGCA------------------------GCAGCA...............................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0

droYak3

G--CA--A--------------------------------CAACAGCAG------CAGCAGCA------------------GCAG--CAAC--------------ATCAACA---------------------------------------GCAGCAGCAGCAGCAAC---------------------------------------------AGCAGC------ATCATC------------------AGC------AGCA---AC---A---GCAACAACACCACCAGCAACAGCA------GCAGCAGC--------------------------------ATCATCATCAGC--A------AT------------T--TGGCCAGCAGCA------------------------------------------------------------------------------------GCATCCACATGCCCATCACCTGCACCACCATG---C	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................AGCAGCAGCAGCAAC---------------------------------------------AGCAGC------AT...............................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................AACA---------------------------------------GCAGCAGCAGCAGCAAC---------------------------------------------.............................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................ACAGCAG------CAGCAGCA------------------GCAG--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................AGCA------GCAGCAGC--------------------------------ATCATCATC.................................................................................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
....A--A--------------------------------CAACAGCAG------CAGCAGCA------------------GCAG--CAAC--------------A........................................................................................................................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.......A--------------------------------CAACAGCAG------CAGCAGCA------------------GCAG--CAAC--------------.........................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................GCAG--CAAC--------------ATCAACA---------------------------------------GCAGCA.....................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................CAAC--------------ATCAACA---------------------------------------GCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................	20	18	0.06	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................ACCAGCAACAGCA------GCAGCAGC--------------------------------..........................................................................................................................................................................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......A--------------------------------CAACAGCAG------CAGCAGCA------------------GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................CAGCAGCAGCAGCAAC---------------------------------------------AGCAGC------.................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................AGCAGCAGCAGCAAC---------------------------------------------AGCAGC------.................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................CA---------------------------------------GCAGCAGCAGCAGCAAC---------------------------------------------AGCAGC------.................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................AG------CAGCAGCA------------------GCAG--CAAC--------------ATC......................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...........................................CAGCAG------CAGCAGCA------------------GCAG--CAAC--------------.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCAACA---------------------------------------GCAGCAGCAGCAG..............................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................ACA---------------------------------------GCAGCAGCAGCAGCAAC---------------------------------------------A............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

G--CA--A--------------------------------CAGCAGCAG------CAGCAACA------------------GTTG--CA--------------------GCAGTTAC---------------------------------AGCAACAACAGCAGCTAC---------------------------------------------AGCA---GC---AGCAGCAA------------------CAGCAGCAGCAGCAGC---AA---------------------CAACA---ACAGCAGCAGC--------------------------------AACA---GC-----A-ATC---------------------------------------------------------------------GAT-GGGTGATCCTGCTGAT---C-AT-GCA------ACATCGACGTCAGC----------------------GGGAG---C	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................................GC--------------------------------AACA---GC-----A-ATC---------------------------------------------------------------------GAT-GGGT..........................................................................	19	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................AGCAACAACAGCAGCTAC---------------------------------------------AGCA---......................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	1	0	0
....................................................................................................................C---------------------------------AGCAACAACAGCAGCTAC---------------------------------------------AGCA---GC---A................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................AA---------------------CAACA---ACAGCAGCAGC--------------------------------AACA---GC-----............................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................A------------------CAGCAGCAGCAGCAGC---AA---------------------C............................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................C---AA---------------------CAACA---ACAGCAGCAGC--------------------------------A.........................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................CAGCAA------------------CAGCAGCAGCAGCAGC---A...................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................GCAA------------------CAGCAGCAGCAGCAG........................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................GCAGCAGC---AA---------------------CAACA---ACAGCAGCA............................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0
................................................................................................................................................................GCAGCTAC---------------------------------------------AGCA---GC---AGCAGG...........................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0

dmo_1109

scaffold_6496:12127487-12127561 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-0.37	0.0	0.0