ID:

dmo_11

 Coordinate:

scaffold_6540:29637001-29637059 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.3 -38.3 -38.3

Flybase annnotation

intron [Dmoj\GI10591-in]; utr5 [utr5_plus_11464]

No Repeatable elements found

Sense Strand Reads

TCCTTGACGAATGTCAAACAGCTTGGCTGGCTTGGTAGCTGAACTACGAAGCCCGGGTTTTGTGTGTGCCGCGCTGTTTTGAGTACGTAGCACCACATGATTCGGCTTGGTAGTACAGGCTCATTCAACAAATTAGGCATCAATTTTATAGATTAATAC

***********************************.((((..(((((.(((((.(((((.((((.((((((.(((......))).))..)))))))).)))))))))).)))))...))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 M046

female body

 V056

head

 V049

head

 V041

embryo

 V110

male body
.......................................................................................TAGCACCACATGATTCGGCTT................................................... 21 0 1 338328.00 338328 286032 40577 4343 3629 2388 1359
.......................................................................................TAGCACCACATGATTCGGCTC................................................... 21 1 1 16664.00 16664 16617 20 11 9 4 3
.......................................................................................TAGCACCACATGATTCGGCTTT.................................................. 22 1 1 15042.00 15042 12092 1988 435 350 125 52
.......................................................................................TACCACCACATGATTCGGCTT................................................... 21 1 1 14379.00 14379 14365 9 1 2 2 0
.......................................................................................TGGCACCACATGATTCGGCTT................................................... 21 1 1 10207.00 10207 10176 16 5 9 1 0
.......................................................................................TAGTACCACATGATTCGGCTT................................................... 21 1 1 10148.00 10148 10137 2 5 1 2 1
.......................................................................................TAGCACCACATGATTCGGCT.................................................... 20 0 1 8620.00 8620 6494 941 513 421 135 116
.......................................................................................TAGCACCACATGATTCGGCTTA.................................................. 22 1 1 3762.00 3762 2869 745 52 44 36 16
........................................................................................AGCACCACATGATTCGGCTT................................................... 20 0 1 2700.00 2700 630 2063 2 3 1 1
.......................................................................................TTGCACCACATGATTCGGCTT................................................... 21 1 1 2220.00 2220 2219 1 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTC.................................................. 22 1 1 1980.00 1980 1584 301 26 20 7 42
......................................................................................CTAGCACCACATGATTCGGCTT................................................... 22 1 1 1511.00 1511 1427 70 8 3 3 0
.......................................................................................TAGCACCACATGATTCGGCTTG.................................................. 22 0 1 1419.00 1419 1001 257 61 50 45 5
.......................................................................................TAGCACCACATGCTTCGGCTT................................................... 21 1 1 1179.00 1179 1095 1 16 52 15 0
.......................................................................................TAGCACCACATGATTCGGCC.................................................... 20 1 1 1134.00 1134 1133 0 0 0 1 0
.......................................................................................TAGCACCACATGATTTGGCTT................................................... 21 1 1 1106.00 1106 1084 10 5 2 4 1
.......................................................................................TAGCACCCCATGATTCGGCTT................................................... 21 1 1 1082.00 1082 1073 1 2 6 0 0
.......................................................................................GAGCACCACATGATTCGGCTT................................................... 21 1 1 1049.00 1049 1028 12 3 3 3 0
.......................................................................................TAGCACCACATGATTCGGCTG................................................... 21 1 1 995.00 995 864 12 9 13 96 1
.......................................................................................CAGCACCACATGATTCGGCTT................................................... 21 1 1 949.00 949 924 12 6 3 4 0
.......................................................................................TAGCACCACATGATTCGGCTTAA................................................. 23 2 1 933.00 933 522 392 4 0 13 2
.......................................................................................TATCACCACATGATTCGGCTT................................................... 21 1 1 831.00 831 793 27 2 0 1 8
.......................................................................................TACCACCACATGATTCGGCTC................................................... 21 2 1 813.00 813 813 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTA................................................... 21 1 1 789.00 789 461 308 3 7 8 2
.......................................................................................TGGCACCACATGATTCGGCTC................................................... 21 2 1 757.00 757 757 0 0 0 0 0
.......................................................................................AAGCACCACATGATTCGGCTT................................................... 21 1 1 685.00 685 658 20 2 5 0 0
.......................................................................................TAGTACCACATGATTCGGCTC................................................... 21 2 1 596.00 596 596 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTAAA................................................ 24 3 1 577.00 577 97 473 0 0 3 4
.......................................................................................TACCACCACATGATTCGGCTTT.................................................. 22 2 1 554.00 554 553 0 0 1 0 0
.......................................................................................TGGCACCACATGATTCGGCTTT.................................................. 22 2 1 547.00 547 540 1 6 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTTT................................................. 23 2 1 538.00 538 406 80 21 17 11 3
.......................................................................................TACTACCACATGATTCGGCTT................................................... 21 2 1 477.00 477 477 0 0 0 0 0
.......................................................................................TAGCTCCACATGATTCGGCTT................................................... 21 1 1 435.00 435 431 2 0 0 2 0
.......................................................................................TAACACCACATGATTCGGCTT................................................... 21 1 1 424.00 424 381 17 8 12 4 2
.......................................................................................TAGTACCACATGATTCGGCTTT.................................................. 22 2 1 420.00 420 420 0 0 0 0 0
.......................................................................................TAGCAGCACATGATTCGGCTT................................................... 21 1 1 404.00 404 401 1 1 1 0 0
.......................................................................................TACCACCACATGATTCGGCT.................................................... 20 1 1 369.00 369 369 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCCT................................................... 21 1 1 364.00 364 344 8 3 6 3 0
.......................................................................................TAGCACCACATGATTCGGC..................................................... 19 0 1 309.00 309 210 58 12 18 8 3
.......................................................................................TAGCACCACATGATTCGGTTT................................................... 21 1 1 306.00 306 297 6 2 1 0 0
.......................................................................................TAGCACCAAATGATTCGGCTT................................................... 21 1 1 306.00 306 296 2 3 0 4 1
.......................................................................................TAGCACCACATAATTCGGCTT................................................... 21 1 1 293.00 293 195 84 4 9 1 0
.......................................................................................TAGCACCACATGATTCTGCTT................................................... 21 1 1 239.00 239 212 3 7 11 1 5
.......................................................................................TGGCACCACATGATTCGGCT.................................................... 20 1 1 238.00 238 237 0 1 0 0 0
.......................................................................................TAGCACCACATCATTCGGCTT................................................... 21 1 1 234.00 234 180 49 3 2 0 0
.......................................................................................TAGCACCACATGATTCGGCTTTA................................................. 23 2 1 233.00 233 183 43 1 1 4 1
.......................................................................................TAGTACCACATGATTCGGCT.................................................... 20 1 1 231.00 231 231 0 0 0 0 0
......................................................................................CGAGCACCACATGATTCGGCTT................................................... 22 2 1 227.00 227 227 0 0 0 0 0
.......................................................................................TGGTACCACATGATTCGGCTT................................................... 21 2 1 217.00 217 217 0 0 0 0 0
.......................................................................................TACCACCACATGCTTCGGCTT................................................... 21 2 1 215.00 215 215 0 0 0 0 0
.......................................................................................TAGCACCGCATGATTCGGCTT................................................... 21 1 1 207.00 207 172 13 12 9 1 0
.......................................................................................TAGCGCCACATGATTCGGCTT................................................... 21 1 1 206.00 206 176 16 7 5 1 1
........................................................................................TACACCACATGATTCGGCTT................................................... 20 2 1 205.00 205 203 1 0 0 0 1
.......................................................................................TAGCACCACATGATTCGGCTTAAAA............................................... 25 3 1 202.00 202 15 186 0 0 0 1
.......................................................................................TAGCACCACATGATTCAGCTT................................................... 21 1 1 195.00 195 169 6 6 11 1 2
.......................................................................................TAGCATCACATGATTCGGCTT................................................... 21 1 1 194.00 194 183 3 1 2 5 0
.......................................................................................TAGCACCACATGATTCGTCTT................................................... 21 1 1 181.00 181 162 5 8 4 1 1
..................................................GCCCGGGTTTTGTGTGTGCCGCG...................................................................................... 23 0 1 180.00 180 63 8 37 39 30 3
........................................................................................ATCACCACATGATTCGGCTT................................................... 20 1 1 176.00 176 174 2 0 0 0 0
.......................................................................................TAGCACGACATGATTCGGCTT................................................... 21 1 1 166.00 166 162 2 0 0 2 0
.......................................................................................TAGCACCACGTGATTCGGCTT................................................... 21 1 1 164.00 164 131 11 11 5 6 0
.......................................................................................TAGCACCACATGATTCGCCTT................................................... 21 1 1 164.00 164 151 7 3 2 0 1
.......................................................................................TAGCACTACATGATTCGGCTT................................................... 21 1 1 159.00 159 142 13 1 3 0 0
.......................................................................................TACCACCACATGATTCGGCTTA.................................................. 22 2 1 154.00 154 154 0 0 0 0 0
.......................................................................................TAGCACCACATGATCCGGCTT................................................... 21 1 1 154.00 154 136 6 6 4 1 1
.......................................................................................TTGCACCACATGATTCGGCTC................................................... 21 2 1 148.00 148 148 0 0 0 0 0
.......................................................................................TAGCACCACACGATTCGGCTT................................................... 21 1 1 143.00 143 110 16 5 10 2 0
........................................................................................AGCACCACATGATTCGGCTTT.................................................. 21 1 1 138.00 138 33 105 0 0 0 0
..................................................GCCCGGGTTTTGTGTGTGCCG........................................................................................ 21 0 1 131.00 131 19 12 32 31 25 12
.........................................................................................GCACCACATGATTCGGCTT................................................... 19 0 1 129.00 129 61 63 1 1 0 3
.......................................................................................TTGCACCACATGATTCGGCTTT.................................................. 22 2 1 126.00 126 126 0 0 0 0 0
.......................................................................................TAGCACCACATGACTCGGCTT................................................... 21 1 1 123.00 123 100 6 6 9 2 0
.......................................................................................TGCCACCACATGATTCGGCTT................................................... 21 2 1 122.00 122 122 0 0 0 0 0
.......................................................................................TAGCACCACTTGATTCGGCTT................................................... 21 1 1 121.00 121 117 0 2 0 2 0
.......................................................................................TAGCACCACATGATTCGACTT................................................... 21 1 1 120.00 120 110 3 2 3 2 0
.......................................................................................TAGCACCACATGATTCGGCGT................................................... 21 1 1 113.00 113 99 1 5 2 6 0
.......................................................................................TGGCACCACATGATTCGGCTTA.................................................. 22 2 1 110.00 110 110 0 0 0 0 0
.......................................................................................TAGCACCATATGATTCGGCTT................................................... 21 1 1 109.00 109 96 2 5 2 2 2
.......................................................................................TACCACCCCATGATTCGGCTT................................................... 21 2 1 109.00 109 109 0 0 0 0 0
.......................................................................................TAGCACCACATGATTAGGCTT................................................... 21 1 1 108.00 108 82 10 10 3 2 1
.......................................................................................TAGCACCACATGGTTCGGCTT................................................... 21 1 1 108.00 108 70 15 7 9 6 1
.......................................................................................TAGCACCCCATGATTCTGCTT................................................... 21 2 1 107.00 107 107 0 0 0 0 0
.......................................................................................TAGCACCACAAGATTCGGCTT................................................... 21 1 1 103.00 103 93 8 1 1 0 0
.......................................................................................TAGTACCACATGATTCGGCTTA.................................................. 22 2 1 101.00 101 101 0 0 0 0 0
.......................................................................................TAGCACCACATTATTCGGCTT................................................... 21 1 1 98.00 98 56 38 1 2 0 1
.......................................................................................TAGCACAACATGATTCGGCTT................................................... 21 1 1 88.00 88 59 6 9 5 8 1
.......................................................................................TAGCACCCCATGCTTCGGCTT................................................... 21 2 1 87.00 87 86 0 0 0 1 0
.......................................................................................TAGCACCACATGATTCGGATT................................................... 21 1 1 84.00 84 68 0 6 6 4 0
...................................................................................GATCTAGCACCACATGATTCGGCTT................................................... 25 3 1 83.00 83 82 0 1 0 0 0
.....................................................................................TCTAGCACCACATGATTCGGCTT................................................... 23 2 1 80.00 80 78 2 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTTAAA............................................... 25 3 1 80.00 80 11 68 0 0 0 1
.......................................................................................TGGCACCACATGATTCGGCTTC.................................................. 22 2 1 78.00 78 77 0 1 0 0 0
......................................................................................TTAGCACCACATGATTCGGCTT................................................... 22 1 1 76.00 76 13 63 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTTAA................................................ 24 3 1 74.00 74 24 50 0 0 0 0
......................................................................................CTAGCACCACATGATTCGGCTTT.................................................. 23 2 1 72.00 72 68 2 2 0 0 0
.......................................................................................TAGTACCCCATGATTCGGCTT................................................... 21 2 1 72.00 72 72 0 0 0 0 0
.......................................................................................TACCACCACATGATTCGGCTTC.................................................. 22 2 1 72.00 72 72 0 0 0 0 0
.......................................................................................TAGCACCACCTGATTCGGCTT................................................... 21 1 1 69.00 69 16 0 8 40 5 0
.......................................................................................TAGCACCACATGATTCGGCTAA.................................................. 22 2 1 68.00 68 28 36 1 0 1 2
.......................................................................................TAGCACCCCATGATTCGGCTC................................................... 21 2 1 65.00 65 65 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCCGCTT................................................... 21 1 1 65.00 65 44 5 3 11 2 0
.......................................................................................TAGCACCACATGAGTCGGCTT................................................... 21 1 1 63.00 63 56 0 7 0 0 0
.......................................................................................TTGTACCACATGATTCGGCTT................................................... 21 2 1 62.00 62 62 0 0 0 0 0
.......................................................................................CAGCACCACATGATTCGGCTC................................................... 21 2 1 62.00 62 62 0 0 0 0 0
........................................................................................AGCACCACATGATTCGGCT.................................................... 19 0 1 61.00 61 10 51 0 0 0 0
.......................................................................................TAGCACCACATGATACGGCTT................................................... 21 1 1 61.00 61 49 8 3 1 0 0
........................................................................................AGCACCACATGATTCGGCTTA.................................................. 21 1 1 59.00 59 12 47 0 0 0 0
.......................................................................................TAGCACCACATGTTTCGGCTT................................................... 21 1 1 58.00 58 16 1 25 15 1 0
.......................................................................................TAGCACCACATGATTTGGCTC................................................... 21 2 1 58.00 58 58 0 0 0 0 0
....................................................................................ATCTAGCACCACATGATTCGGCTT................................................... 24 2 1 57.00 57 57 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTTG................................................. 23 1 1 57.00 57 31 10 4 8 3 1
......................................................................................GTAGCACCACATGATTCGGCTT................................................... 22 0 1 57.00 57 3 54 0 0 0 0
.......................................................................................TGGCACCACATGATTCGGCC.................................................... 20 2 1 55.00 55 55 0 0 0 0 0
.......................................................................................TAGCACCACATGAATCGGCTT................................................... 21 1 1 55.00 55 51 0 1 3 0 0
.......................................................................................TAGCACCACATGATTCGGCAT................................................... 21 1 1 54.00 54 53 0 1 0 0 0
.......................................................................................TTGCACCACATGATTCGGCT.................................................... 20 1 1 54.00 54 54 0 0 0 0 0
.......................................................................................TAGCACCACATGATTTGGTTT................................................... 21 2 1 54.00 54 54 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTTC................................................. 23 2 1 54.00 54 44 9 0 1 0 0
.......................................................................................TAGCACCACATGATTCGGCTTAT................................................. 23 2 1 54.00 54 34 17 1 1 0 1
.......................................................................................GAGCACCACATGATTCGGCTTT.................................................. 22 2 1 53.00 53 53 0 0 0 0 0
.......................................................................................TATCACCACATGATTCGGCTC................................................... 21 2 1 52.00 52 52 0 0 0 0 0
........................................................................................AGCACCACATGATTCGGCTC................................................... 20 1 1 52.00 52 50 2 0 0 0 0
.......................................................................................TAGCACCTCATGATTCGGCTT................................................... 21 1 1 52.00 52 34 4 6 4 3 1
.......................................................................................TAGTACCACATGATTCGGCTTC.................................................. 22 2 1 51.00 51 50 1 0 0 0 0
.......................................................................................TACCACCACATGATTCGGCC.................................................... 20 2 1 50.00 50 50 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGCTT.................................................... 20 2 1 50.00 50 49 0 0 0 1 0
........................................................................................AGAACCACATGATTCGGCTT................................................... 20 1 1 47.00 47 46 1 0 0 0 0
......................................................................................CTAGCACCACATGATTCGGCTC................................................... 22 2 2 47.00 94 93 0 1 0 0 0
.......................................................................................TAGTACCACATGATTCGGCC.................................................... 20 2 1 47.00 47 47 0 0 0 0 0
.......................................................................................CAGCACCACATGATTCGGCTTT.................................................. 22 2 1 46.00 46 43 2 1 0 0 0
......................................................................................CTAGCACCACATGATTCGGCT.................................................... 21 1 1 45.00 45 39 3 0 3 0 0
.......................................................................................TAGTACCACATGCTTCGGCTT................................................... 21 2 1 45.00 45 45 0 0 0 0 0
.......................................................................................TGGCACCACATGCTTCGGCTT................................................... 21 2 1 44.00 44 44 0 0 0 0 0
..................................................GCCCGGGTTTTGTGTGTGCCGC....................................................................................... 22 0 1 44.00 44 23 4 0 6 8 3
.......................................................................................TACCACCACATGATTTGGCTT................................................... 21 2 1 44.00 44 44 0 0 0 0 0
.......................................................................................TAGCACCACATGATTTGGCTTT.................................................. 22 2 1 43.00 43 41 0 1 0 1 0
......................................................................................ATAGCACCACATGATTCGGCTT................................................... 22 1 1 43.00 43 19 23 0 1 0 0
.......................................................................................TAGCACCCCATGATTCGGCTTT.................................................. 22 2 1 43.00 43 43 0 0 0 0 0
.......................................................................................TAGTACCACATGATTTGGCTT................................................... 21 2 1 42.00 42 42 0 0 0 0 0
.......................................................................................TAGCACCACATGATTGGGCTT................................................... 21 1 1 41.00 41 32 8 0 0 1 0
.......................................................................................TAGCACCACATGATTCGGCTGT.................................................. 22 2 1 41.00 41 33 0 1 4 1 2
.......................................................................................TAGAACCACATGATTCGGCTT................................................... 21 1 1 41.00 41 20 2 6 7 5 1
.......................................................................................TAGCTCCACATGATTCGGCTC................................................... 21 2 1 39.00 39 39 0 0 0 0 0
.......................................................................................TAGCACCACATGCTACGGCTT................................................... 21 2 1 39.00 39 39 0 0 0 0 0
.......................................................................................TGGCACCACATGATTTGGCTT................................................... 21 2 1 39.00 39 39 0 0 0 0 0
.......................................................................................TACCACCAAATGATTCGGCTT................................................... 21 2 1 39.00 39 39 0 0 0 0 0
.......................................................................................TACCACCACATGATTCGGCTTG.................................................. 22 1 1 38.00 38 37 1 0 0 0 0
.......................................................................................TGGCACCACATGATTCGGCTTG.................................................. 22 1 1 37.00 37 36 0 0 0 1 0
.......................................................................................TAGCACCACATGATTCGG...................................................... 18 0 1 37.00 37 4 12 4 12 4 1
.......................................................................................TAGCACCACAGGATTCGGCTT................................................... 21 1 1 36.00 36 9 7 13 5 2 0
.......................................................................................TAGTACGACATGATTCGGCTT................................................... 21 2 1 36.00 36 36 0 0 0 0 0
.......................................................................................AAGCACCACATGATTCGGCTTT.................................................. 22 2 1 35.00 35 35 0 0 0 0 0
.......................................................................................TAGCACCCCATGCTTCTGCTT................................................... 21 3 1 35.00 35 35 0 0 0 0 0
.......................................................................................TAGCACCACATGCTTCTGCTT................................................... 21 2 1 34.00 34 34 0 0 0 0 0
.......................................................................................TAGTACCACATGATTCGGCTTG.................................................. 22 1 1 34.00 34 34 0 0 0 0 0
..........................................................................................CACCACATGATTCGGCTT................................................... 18 0 1 33.00 33 17 14 1 0 0 1
.......................................................................................AAGCACCACATGATTCGGCTC................................................... 21 2 1 33.00 33 33 0 0 0 0 0
.......................................................................................TATTACCACATGATTCGGCTT................................................... 21 2 1 33.00 33 33 0 0 0 0 0
.......................................................................................TACCACCACATGATTCGGCTG................................................... 21 2 1 33.00 33 33 0 0 0 0 0
.......................................................................................TATCACCACATGATTCGGCTTT.................................................. 22 2 1 33.00 33 30 3 0 0 0 0
.......................................................................................TAACACCACATGATTCGGCTC................................................... 21 2 1 32.00 32 32 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCCC................................................... 21 2 1 32.00 32 32 0 0 0 0 0
.......................................................................................TAGCACCCAATGATTCGGCTT................................................... 21 2 1 31.00 31 31 0 0 0 0 0
.......................................................................................TAGTACCACATGATTCGGCTG................................................... 21 2 1 31.00 31 31 0 0 0 0 0
.......................................................................................TACCACCACATGATTCGGCTTAA................................................. 23 3 1 30.00 30 30 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGCCTTT.................................................. 22 2 1 30.00 30 30 0 0 0 0 0
.......................................................................................TGGCACCCCATGATTCGGCTT................................................... 21 2 1 29.00 29 29 0 0 0 0 0
.......................................................................................TGGCACCACATGATTCGGCTA................................................... 21 2 1 29.00 29 29 0 0 0 0 0
........................................................................................AGCACCACATGATTCGGCTTAAA................................................ 23 3 1 28.00 28 0 28 0 0 0 0
.......................................................................................TAGCACCACATGCTTCGGCTTT.................................................. 22 2 2 27.00 54 47 0 2 5 0 0
.........................................................................................TCACCACATGATTCGGCTT................................................... 19 1 1 27.00 27 27 0 0 0 0 0
.......................................................................................TGGCACCACATGATTCGGCTTAA................................................. 23 3 1 26.00 26 26 0 0 0 0 0
........................................................................................AGCTCCACATGATTCGGCTT................................................... 20 1 1 26.00 26 26 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCAGCTC................................................... 21 2 1 26.00 26 26 0 0 0 0 0
.......................................................................................TAGCACCACATGATTTGGCT.................................................... 20 1 1 26.00 26 25 0 1 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTGT................................................. 23 1 1 26.00 26 18 4 1 1 2 0
.......................................................................................TAGCACCACATGATTCGGCTAAA................................................. 23 3 1 25.00 25 7 16 0 0 0 2
.......................................................................................TAGTACCAAATGATTCGGCTT................................................... 21 2 1 25.00 25 25 0 0 0 0 0
.......................................................................................TTGCACCACATGATTCGGCTTA.................................................. 22 2 1 25.00 25 25 0 0 0 0 0
........................................................................................AGCACCACATGATTCGGCTTAA................................................. 22 2 1 24.00 24 1 23 0 0 0 0
.......................................................................................TTGCACCCCATGATTCGGCTT................................................... 21 2 1 24.00 24 24 0 0 0 0 0
......................................................................................CTATCACCACATGATTCGGCTT................................................... 22 2 1 24.00 24 24 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCA.................................................... 20 1 1 24.00 24 12 6 2 0 1 3
.......................................................................................CAGCACCACATGATTCGGCT.................................................... 20 1 1 23.00 23 23 0 0 0 0 0
.......................................................................................TGGTACCACATGATTCGGCTC................................................... 21 3 1 23.00 23 23 0 0 0 0 0
.......................................................................................TAGCACCACATGCTTCGGTTT................................................... 21 2 1 23.00 23 23 0 0 0 0 0
.......................................................................................TAGCACCACATGCTTCGTCTT................................................... 21 2 1 23.00 23 22 0 1 0 0 0
.......................................................................................TAGCACCCCATGATTCGTCTT................................................... 21 2 1 23.00 23 23 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCTGCTTT.................................................. 22 2 1 23.00 23 20 1 0 1 0 1
.......................................................................................TAGCACCACATGATTCGGCTTGG................................................. 23 0 1 23.00 23 16 7 0 0 0 0
.......................................................................................GAGCACCACATGATTCGGCTC................................................... 21 2 2 22.50 45 45 0 0 0 0 0
.......................................................................................TAGCAACACATGATTCGGCTT................................................... 21 1 1 22.00 22 17 1 3 1 0 0
.......................................................................................TAGCACCACATGATTCGGCAA................................................... 21 2 1 22.00 22 13 9 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTTTT................................................ 24 2 1 22.00 22 15 4 1 2 0 0
.......................................................................................TCGCACCACATGATTCGGCTT................................................... 21 1 1 22.00 22 10 0 2 8 2 0
.......................................................................................TAGCACCCCATGATTCGGCT.................................................... 20 1 1 22.00 22 21 0 0 1 0 0
.......................................................................................TAGCCCCACATGATTCGGCTT................................................... 21 1 1 22.00 22 7 0 6 7 2 0
.......................................................................................TAGCACCACATGCTTCGGCTG................................................... 21 2 2 21.50 43 41 0 0 0 2 0
.......................................................................................TAGCACCACATGATGCGGCTT................................................... 21 1 1 21.00 21 9 1 6 5 0 0
.......................................................................................TAGCACCACATGATTCGGTTC................................................... 21 2 1 21.00 21 21 0 0 0 0 0
.......................................................................................TAGCACCAGATGATTCGGCTT................................................... 21 1 1 21.00 21 19 0 1 0 1 0
.......................................................................................TACCACCACATGATTCGGCTTTT................................................. 23 3 1 21.00 21 21 0 0 0 0 0
.......................................................................................TAGCAGCACATGATTCGGCTTT.................................................. 22 2 1 21.00 21 20 0 1 0 0 0
.......................................................................................TAGCACCACATGATTCGGCCTT.................................................. 22 2 1 20.00 20 18 0 0 2 0 0
.......................................................................................TGGCACCACATGATTCGGCTTTT................................................. 23 3 1 20.00 20 20 0 0 0 0 0
.......................................................................................TATCACCACATGATTCGGCT.................................................... 20 1 1 20.00 20 19 0 0 0 0 1
.......................................................................................TAGCACCACATGATTCGGTTTT.................................................. 22 2 1 20.00 20 20 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTAT.................................................. 22 2 1 20.00 20 13 7 0 0 0 0
.......................................................................................TAGTACCACATGATTCGGCTTAA................................................. 23 3 1 19.00 19 19 0 0 0 0 0
.......................................................................................TACCACCACATGATTCGGCTA................................................... 21 2 1 19.00 19 19 0 0 0 0 0
........................................................................................AGCACCACATGATTCGGCTA................................................... 20 1 1 19.00 19 0 19 0 0 0 0
........................................................................................TGCACCACATGATTCGGCTT................................................... 20 1 1 19.00 19 19 0 0 0 0 0
.......................................................................................TAGGACCACATGATTCGGCTT................................................... 21 1 1 19.00 19 15 1 2 1 0 0
........................................................................................AGCACCACATGATTCGGCTTC.................................................. 21 1 1 19.00 19 3 16 0 0 0 0
.......................................................................................TAGCACCACATGCTTCGGCT.................................................... 20 1 2 18.50 37 32 0 1 4 0 0
.......................................................................................TACTACCACATGATTCGGCTTT.................................................. 22 3 1 18.00 18 18 0 0 0 0 0
.......................................................................................TAGTACCACATGATTCGGTTT................................................... 21 2 1 18.00 18 18 0 0 0 0 0
.....................................................................................CCTAGCACCACATGATTCGGCTT................................................... 23 1 1 18.00 18 17 1 0 0 0 0
..................................................GCCCGGGTTTTGTGTGTGCC......................................................................................... 20 0 1 18.00 18 6 1 2 5 2 2
.......................................................................................GAGCACCACATGATTCGGCT.................................................... 20 1 1 18.00 18 18 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTCT................................................. 23 2 1 18.00 18 5 12 1 0 0 0
.......................................................................................TGGCACCACATGATTCGGCTG................................................... 21 2 1 18.00 18 18 0 0 0 0 0
.......................................................................................TAGCACCAAATGATTCGGCTC................................................... 21 2 1 17.00 17 17 0 0 0 0 0
.......................................................................................AAGCACCACATGATTCGGCT.................................................... 20 1 1 17.00 17 13 2 1 0 0 1
.......................................................................................TTGCACCACATGATTCGGCTTC.................................................. 22 2 1 17.00 17 17 0 0 0 0 0
.......................................................................................TACTACCACATGATTCGGCTC................................................... 21 3 1 16.00 16 16 0 0 0 0 0
.......................................................................................TAGTACCACATGATTCGGCTA................................................... 21 2 1 16.00 16 16 0 0 0 0 0
.......................................................................................TAATACCACATGATTCGGCTT................................................... 21 2 1 16.00 16 16 0 0 0 0 0
.......................................................................................TAGCTCCACATGATTCGGCTTT.................................................. 22 2 1 16.00 16 16 0 0 0 0 0
.......................................................................................TAGTACCACATGATTCGGCTTTT................................................. 23 3 1 16.00 16 16 0 0 0 0 0
......................................................................................CGAGCACCACATGATTCGGCTTT.................................................. 23 3 1 15.00 15 15 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTAC................................................. 23 2 1 15.00 15 9 6 0 0 0 0
.......................................................................................TAGCACCACATGATTCGCCTC................................................... 21 2 1 15.00 15 15 0 0 0 0 0
.......................................................................................TACCACCACATCATTCGGCTT................................................... 21 2 1 15.00 15 15 0 0 0 0 0
.......................................................................................TAGCACCACACGATTCGGCTC................................................... 21 2 1 14.00 14 14 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGTCTTT.................................................. 22 2 1 14.00 14 11 0 2 1 0 0
.......................................................................................TAGCACCACATGATTCGGCTTCA................................................. 23 2 1 14.00 14 3 9 0 0 0 2
.......................................................................................TACCACCACATGATTCGTCTT................................................... 21 2 1 14.00 14 14 0 0 0 0 0
........................................................................................ATCACCACATGATTCGGCTC................................................... 20 2 1 13.00 13 13 0 0 0 0 0
........................................................................................AGCACCACATGATTCGGCTTG.................................................. 21 0 1 13.00 13 3 10 0 0 0 0
.......................................................................................TAGTTCCACATGATTCGGCTT................................................... 21 2 1 13.00 13 13 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGGTT................................................... 21 1 1 13.00 13 7 1 1 2 2 0
........................................................................................AGCACCACATGATTCGGCTTAAAA............................................... 24 3 1 12.00 12 0 12 0 0 0 0
.......................................................................................TACTACCACATGATTCGGCT.................................................... 20 2 1 12.00 12 12 0 0 0 0 0
.......................................................................................TTGCACCACATGCTTCGGCTT................................................... 21 2 1 12.00 12 12 0 0 0 0 0
.......................................................................................TAGTACCACATGATTCTGCTT................................................... 21 2 1 12.00 12 12 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTGA................................................. 23 1 1 12.00 12 7 4 0 1 0 0
.......................................................................................TAGCACCACATGATTCTGCTC................................................... 21 2 1 12.00 12 12 0 0 0 0 0
.......................................................................................TACCACCGCATGATTCGGCTT................................................... 21 2 1 12.00 12 12 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTGC.................................................. 22 2 1 12.00 12 12 0 0 0 0 0
.......................................................................................GAGCACCACATGATTCGGCTTA.................................................. 22 2 1 11.00 11 11 0 0 0 0 0
.......................................................................................TGGTACCACATGATTCGGCTTT.................................................. 22 3 1 11.00 11 11 0 0 0 0 0
.......................................................................................TAGTACCACATGATCCGGCTT................................................... 21 2 1 11.00 11 11 0 0 0 0 0
.......................................................................................TACCATCACATGATTCGGCTT................................................... 21 2 1 11.00 11 11 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTGA.................................................. 22 2 1 11.00 11 7 1 1 1 1 0
.......................................................................................TAGCAGCACATGATTCGGCTC................................................... 21 2 2 11.00 22 22 0 0 0 0 0
......................................................................................TCAGCACCACATGATTCGGCTT................................................... 22 2 1 11.00 11 11 0 0 0 0 0
.......................................................................................TTGCACCACATGATTTGGCTT................................................... 21 2 1 11.00 11 11 0 0 0 0 0
.......................................................................................TAGCACCCCATGATTCGGCTG................................................... 21 2 1 11.00 11 11 0 0 0 0 0
.......................................................................................TGGCTCCACATGATTCGGCTT................................................... 21 2 1 11.00 11 11 0 0 0 0 0
.......................................................................................TACCACCACATGATTCGCCTT................................................... 21 2 1 11.00 11 11 0 0 0 0 0
.......................................................................................TAGCAGCACATGATTCGGCT.................................................... 20 1 1 11.00 11 11 0 0 0 0 0
.......................................................................................TAGCACCCCTTGATTCGGCTT................................................... 21 2 1 11.00 11 11 0 0 0 0 0
.......................................................................................TGTCACCACATGATTCGGCTT................................................... 21 2 2 11.00 22 22 0 0 0 0 0
.......................................................................................TAGCACCACATGCTTCGGCTTC.................................................. 22 2 1 11.00 11 10 0 0 1 0 0
.......................................................................................TAACACCACATGATTCGGCTTT.................................................. 22 2 1 10.00 10 9 1 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCAC................................................... 21 2 1 10.00 10 10 0 0 0 0 0
.......................................................................................TGGCACCACATGATTCGGTTT................................................... 21 2 1 10.00 10 10 0 0 0 0 0
.......................................................................................TAGCACCACATGCTCCGGCTT................................................... 21 2 1 10.00 10 10 0 0 0 0 0
.......................................................................................TAGCACCGCATGATTCGGCT.................................................... 20 1 1 10.00 10 6 2 2 0 0 0
......................................................................................CTAGCACCACATGATTCGGCTTC.................................................. 23 2 1 10.00 10 10 0 0 0 0 0
.......................................................................................TAGCGCCACATGATTCGGCTTT.................................................. 22 2 1 10.00 10 6 3 0 1 0 0
.......................................................................................TAGCACCACACGATTCGGCTTT.................................................. 22 2 1 10.00 10 9 1 0 0 0 0
.......................................................................................TAGCGCCACATGATTCGGCT.................................................... 20 1 1 10.00 10 7 1 0 2 0 0
.......................................................................................TTGCACCACATGATTCGGCTG................................................... 21 2 1 10.00 10 9 0 0 1 0 0
.......................................................................................TAGCACCACATGATTCGGTT.................................................... 20 1 1 10.00 10 8 1 0 1 0 0
.......................................................................................TAGCACCACATGATTAGGCTTT.................................................. 22 2 1 10.00 10 4 1 3 2 0 0
.......................................................................................CAGTACCACATGATTCGGCTT................................................... 21 2 1 10.00 10 10 0 0 0 0 0
......................................................................................CTAGCACCACATGATTCGGCTTA.................................................. 23 2 1 10.00 10 8 1 1 0 0 0
.........................................................................................GCACCACATGATTCGGCTC................................................... 19 1 1 10.00 10 10 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCGTT.................................................. 22 2 1 9.00 9 7 0 1 1 0 0
.......................................................................................TAGCACCGCATGATTCGGCTC................................................... 21 2 1 9.00 9 9 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGACTC................................................... 21 2 1 9.00 9 9 0 0 0 0 0
.......................................................................................TGGCACCGCATGATTCGGCTT................................................... 21 2 1 9.00 9 9 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTTAT................................................ 24 2 1 9.00 9 4 4 0 0 0 1
.......................................................................................TAGCACCACATGATTTGGCTTA.................................................. 22 2 1 9.00 9 9 0 0 0 0 0
.......................................................................................CACCACCACATGATTCGGCTT................................................... 21 2 1 9.00 9 9 0 0 0 0 0
.......................................................................................TAGCACCACATGCTTCGGCTTA.................................................. 22 2 1 9.00 9 8 0 1 0 0 0
.......................................................................................TAGTGCCACATGATTCGGCTT................................................... 21 2 1 9.00 9 9 0 0 0 0 0
.......................................................................................TAGCACCACATCATTCGGCTC................................................... 21 2 1 9.00 9 9 0 0 0 0 0
.......................................................................................TAGCACCACGTGATTCGGCTTT.................................................. 22 2 1 9.00 9 3 2 2 1 0 1
.......................................................................................TAGCACCATATGATTCGGCTTT.................................................. 22 2 1 9.00 9 7 1 0 1 0 0
......................................................................................CTAGCACCACATGATTCGGCC.................................................... 21 2 1 9.00 9 9 0 0 0 0 0
.......................................................................................TAGTACCACATGATTCGGC..................................................... 19 1 1 9.00 9 9 0 0 0 0 0
.......................................................................................TAGCACCACATGATTCTGCT.................................................... 20 1 1 9.00 9 6 1 0 2 0 0
.......................................................................................TAGCACCACATCATTCGGCTTT.................................................. 22 2 1 9.00 9 6 3 0 0 0 0
.......................................................................................TAGCACCACATAATTCGGCT.................................................... 20 1 1 9.00 9 4 3 0 2 0 0
........................................................................................AGCACCACATGGTTCGGCTT................................................... 20 1 1 9.00 9 0 9 0 0 0 0
.......................................................................................TAGCACCACATGATTCTGCTTA.................................................. 22 2 1 9.00 9 9 0 0 0 0 0
.........................................................................................GCACCACATGATTCGGCTTT.................................................. 20 1 1 9.00 9 4 5 0 0 0 0
.......................................................................................TAGCACCACATGATTCGGCTTAG................................................. 23 1 1 9.00 9 2 4 0 1 0 2

Anti-sense strand reads

AGGAACTGCTTACAGTTTGTCGAACCGACCGAACCATCGACTTGATGCTTCGGGCCCAAAACACACACGGCGCGACAAAACTCATGCATCGTGGTGTACTAAGCCGAACCATCATGTCCGAGTAAGTTGTTTAATCCGTAGTTAAAATATCTAATTATG

************************************.((((..(((((.(((((.(((((.((((.((((((.(((......))).))..)))))))).)))))))))).)))))...))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6540:29636951-29637109 + dmo_11 confident T------CCTTGACGAATGTCAAACAGCTTGGCTGGCTT-GGTA-----------GCTGAACTACGAAGCCCGGGTTTTGTGTGTGCCGCGC----TGTTTT-------------GAG----TACGTAGCACCACATGATTCGGCTTGGTAGTACAGGCT------CATTCAACAAATTAGGCAT---------------CAATT--------TTATAGATT---------------------AATAC
droVir3 scaffold_13047:12148434-12148591 - dvi-mir-995 Known_mirbase T------CCTTGACGAATGTCAAACGGCTTGGCCGGCTC-AACA-----------GCTGTACAACGAAGCCCGGATACTGTGTGTGTTGCGC----TGTTTA------------GAGG----TACGTAGCACCACATGATTCGGCTTCGTGGTGCACGCA------ACTG------CAACAGAG-----------GGCGTCAACG--------GTATTTATT---------------------AATAT
droGri2 scaffold_14830:1051302-1051448 + dgr_7 confident T------CCTTGACGAATGTCAAAT-G-----------------------------CTGTACAGTGAAGCCCGGATTCTGTGTGTGCTGCGTTTGCTGATTTGCCATACACATAAATA----TACGTAGCACCACATGATTCGGCTTCGTGGTGCTAGCA------ACTC------CATCGCCAGTT------A--------------------GATA--GA---------------------TAAAT
droWil2 scf2_1100000004921:2305161-2305326 - dwi_4 confident T------CCTTGACGAATGTCAAATTT----TCTGACTCCTGCAACTCATGTAAGGCTTCACCAAGCAGCCCGGATTCTGCGAGTGCTGCGC----TACAAC-----------AAGAACTAAGACGTAGCACCACATGATTCGGCTTCATGGTGAAGTACATCGCAACGT------CATCGTGTT--------G--------A------------AGA--CT---------------------TAATC
dp5 2:5900234-5900398 + dps-mir-995 Known_mirbase T------CCTTGACGAATGTCAAACACCTC-GCAGGCTC-TGCAGC--AGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCGC----TGTGTT---------CTTAAAA----GCCGTAGCACCACATGATTCGGCTGCGTGGTCAGCCACAC--------------CTTCAGTAT---------------CCAAGTC------GCATTCATT---------------------AATAC
droPer2 scaffold_19:1637053-1637217 + dpe_4 confident T------CCTTGACGAATGTCAAACACCTC-GCAGGCTC-TGCAGC--AGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCGC----TGTGTT---------CTTAAAA----GCCGTAGCACCACATGATTCGGCTGCGTGGTCAGCCACAC--------------CTTCAGTAT---------------CCAAGTC------GCATTCATT---------------------AATAC
droAna3 scaffold_13340:13021660-13021785 - dan_14 confident T------CCTTGACAAATGTCATTCGC-----------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGAGCTGCGC----CGTTCT-----------TTCTA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAT--------------CATCCTGTT--------G-------------------------GCT---------------------GACAC
droBip1 scf7180000396691:1899382-1899512 - T------CCTTGACAAATGTCATTCGC-----------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGGGCTGCGC----CGTTTT----TTT--CTGGCTA----ACCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAT--------------CATCTTGTA--------A-------------------------TTT---------------------GTCAA
droKik1 scf7180000302307:196862-197025 - T----GCCCTCGGCAAATGTTTTTCAC-----------------------------CTGCACCACGCAGCCCGGATTCTGTGGGGGCTGCGC----TGTTCC----CCT-TTCCGCCA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGCCAG--------------CATCCACG------------------GATCGCCACCCGG------AATTACCCGAAAAGTTCACAAAAAAGC
droFic1 scf7180000453930:227832-227963 - T------CTTTGGCGAGTGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTTTGTGGGAGCTGCGC----TGTTTA----TAC--TCCAAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGCGCAGGACAG--------------CATCGGCTG--------TA---------------------GCCAT------------------------AAA
droEle1 scf7180000491080:437436-437572 + T----GCCCTTGGCGAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGGCGGCTGCGC----TGCTTC----TAC-TATCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG--------------CACCGGATT--------GC--------------------ATA--GT---------------------CAGAG
droRho1 scf7180000779659:137865-137996 + T------CCTGGGCGAATGTCCTTCGC-----------------------------CTGCACCCCGAAGCCCGGATTCTGTGGAGGCTGCGC----TGCTTC----TTT-TCTCAAAT----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG--------------CATCGGCTT--------CC-------------------------AA---------------------AGCCA
droBia1 scf7180000302402:9398397-9398538 + T------CCTTGGTGAATGTCAATCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGAGGGCTGCGC----TGTTTC----TACCTCCCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAG--------------CATCGCGTGCTCCAACTA----------------------CA--GC---------------------CAACA
droTak1 scf7180000415409:611556-611682 + T------CCTTGGCGAATGTCACCCAC-----------------------------CTGCACCCCGCAGCCCGGATTTTGTGGGGGCTGCGC----TGTTTC----TGC-CGCCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG--------------CATCTAATC--------TC---------------------------------------------------TA
droEug1 scf7180000409542:620331-620469 - T----GTCCTTGGCGAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGAGGGCTGCGC----TGTTTG----TGA-TTCTAAAT----TCCGTAGCACCACATGATTCGGCTTCGTGGAGCAGGACAG--------------CATCAGATT--------TT--------------------CTCTTTT---------------------AAAAC
dm3 chr3R:16561627-16561765 + dme-mir-995 Known_mirbase T------CCTTGACGAATGTCATCCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTTC-----------CGTAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTACAGGATAT--------------CATCGGTTT--------TTGCTAGCAA------------ACGGGTA---------------------ATCAC
droSim2 3r:4744583-4744690 - dsi-mir-995 Known_mirbase T------CG-------------TTCAC-----------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTTC-----------CAAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGATAT--------------CATCGGTTT--------TT---------------------------------------------------GC
droSec2 scaffold_27:174265-174372 - dse_20 confident T------CG-------------TTCAC-----------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTTC-----------CGAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGATAT--------------CATCGGTTT--------TT---------------------------------------------------GC
droYak3 3R:5351039-5351189 + dya_10 confident TTGCCATCCTGGATTAAACTCATTCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTTC-----------TAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAT--------------CAGCAATTT--------TTGGTAGCCAATCG------TTATCTACA---------------------ATTAC
droEre2 scaffold_4770:5101896-5102019 - der_22 confident T------TCCTGACGAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----TGTTTT-----------CAGGA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAT--------------CAGCGGTTT--------TT------------------------------------------------GCTAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
T------CCTTGACGAATGTCAAACAGCTTGGCTGGCTT-GGTA-----------GCTGAACTACGAAGCCCGGGTTTTGTGTGTGCCGCGC----TGTTTT-------------GAG----TACGTAGCACCACATGATTCGGCTTGGTAGTACAGGCT------CATTCAACAAATTAGGCAT---------------CAATT--------TTATAGATT---------------------AATACSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................211338328.00338328405772388362943432860321359
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................21116664.0016664204911166173
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................22115042.001504219881253504351209252
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................2018620.0086209411354215136494116
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................2213762.003762745364452286916
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................2012700.00270020631326301
..............................................................................................................................TAGCACCACATGATTCGGCTTC....................................................................................................2211980.00198030172026158442
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................2211419.00141925745506110015
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................2011134.001134010011330
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................211995.0099512961398641
..............................................................................................................................TAGCACCACATGATTCGGCTTAA...................................................................................................231933.0093339213045222
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................211789.007893088734612
..............................................................................................................................TAGCACCACATGATTCGGCTTAAA..................................................................................................241577.00577473300974
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................231538.00538801117214063
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................191309.0030958818122103
..............................................................................................................................TAGCACCACATGATTCGGCTTTA...................................................................................................231233.00233434111831
....................................................................GCCCGGGTTTTGTGTGTGCCGCG.............................................................................................................................................................231180.001808303937633
...............................................................................................................................AGCACCACATGATTCGGCTTT....................................................................................................211138.00138105000330
....................................................................GCCCGGGTTTTGTGTGTGCCG...............................................................................................................................................................211131.00131122531321912
................................................................................................................................GCACCACATGATTCGGCTT.....................................................................................................191129.0012963011613
..............................................................................................................................TAGCACCACATGATTCGGCTTTAA..................................................................................................24174.007450000240
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................22168.006836101282
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................19161.006151000100
...............................................................................................................................AGCACCACATGATTCGGCTTA....................................................................................................21159.005947000120
.............................................................................................................................GTAGCACCACATGATTCGGCTT.....................................................................................................22157.00575400030
..............................................................................................................................TAGCACCACATGATTCGGCTTTC...................................................................................................23154.00549010440
..............................................................................................................................TAGCACCACATGATTCGGCTTAT...................................................................................................23154.005417011341
...............................................................................................................................AGCACCACATGATTCGGCTC.....................................................................................................20152.00522000500
....................................................................GCCCGGGTTTTGTGTGTGCCGC..............................................................................................................................................................22144.00444860233
..............................................................................................................................TAGCACCACATGATTCGGCTGT....................................................................................................22141.00410141332
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................18137.003712412441
.................................................................................................................................CACCACATGATTCGGCTT.....................................................................................................18133.003314001171
..............................................................................................................................TAGCACCACATGATTCGGCCC.....................................................................................................21132.00320000320
...............................................................................................................................AGCACCACATGATTCGGCTTAAA..................................................................................................23128.00282800000
..............................................................................................................................TAGCACCACATGATTCGGCTTGT...................................................................................................23126.00264211180
..............................................................................................................................TAGCACCACATGATTCGGCTAAA...................................................................................................23125.00251600072
...............................................................................................................................AGCACCACATGATTCGGCTTAA...................................................................................................22124.00242300010
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................20124.00246102123
..............................................................................................................................TAGCACCACATGATTCGGCTTGG...................................................................................................23123.00237000160
..............................................................................................................................TAGCACCACATGATTCGGCAA.....................................................................................................21122.00229000130
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................22120.00207000130
...............................................................................................................................AGCACCACATGATTCGGCTA.....................................................................................................20119.00191900000
...............................................................................................................................AGCACCACATGATTCGGCTTC....................................................................................................21119.00191600030
....................................................................GCCCGGGTTTTGTGTGTGCC................................................................................................................................................................20118.0018125262
..............................................................................................................................TAGCACCACATGATTCGGCTTCT...................................................................................................23118.00181200150
..............................................................................................................................TAGCACCACATGATTCGGCTTAC...................................................................................................23115.0015600090
..............................................................................................................................TAGCACCACATGATTCGGCTTCA...................................................................................................23114.0014900032
...............................................................................................................................AGCACCACATGATTCGGCTTG....................................................................................................21113.00131000030
..............................................................................................................................TAGCACCACATGATTCGGCTTGA...................................................................................................23112.0012401070
..............................................................................................................................TAGCACCACATGATTCGGCTGC....................................................................................................22112.00120000120
..............................................................................................................................TAGCACCACATGATTCGGCTGA....................................................................................................22111.0011111170
..............................................................................................................................TAGCACCACATGATTCGGCAC.....................................................................................................21110.00100000100
................................................................................................................................GCACCACATGATTCGGCTC.....................................................................................................19110.00100000100
................................................................................................................................GCACCACATGATTCGGCTTT....................................................................................................2019.009500040
droVir3
T------CCTTGACGAATGTCAAACGGCTTGGCCGGCTC-AACA-----------GCTGTACAACGAAGCCCGGATACTGTGTGTGTTGCGC----TGTTTA------------GAGG----TACGTAGCACCACATGATTCGGCTTCGTGGTGCACGCA------ACTG------CAACAGAG-----------GGCGTCAACG--------GTATTTATT---------------------AATATSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................211460912.00460912628428197159401743875799909359636599422432612275473662751443613911662629382119014165104228709126271223543173262179946771018816151163312756991298741185519058491868144314149911787145815183112196335083468219922261828927710906259510182041678203531416818083141906580196841852712869147401852420185656552335554995510032
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................22129088.00290883871151128618464179232451911315874372492662684226312288738750552854687683766399119763621477882081775291924534575651395241447353115109847460322230777112243127243110951053604626629477475620639515301338674714
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................20121100.00211002339706257472917628041566721169528420212299139675390319421417404352183515412217540565566434683209681611649888128109117187102244179110115895547681756822866078898985930925827317616931322133855666610061008
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................22113944.00139448413025132513716134212461262217243955813931840128341536096914613946437540578651568469375714612190598873601265511510062605041236023136094105674586188581516323439464614180151155334349
....................................................................GCCCGGATACTGTGTGTGTTGC..............................................................................................................................................................2216041.006041101312531851157422700000014029851215117633374110651111101231100010110155508727530842526251913312229091292911861280
..............................................................................................................................TAGCACCACATGATTCGGCTTC....................................................................................................2215507.0055074242625623712615510603412402201915825720238545249463356173505133189118171583812021220034455411153111276016183916114861625810698121281226
....................................................................GCCCGGATACTGTGTGTGTTG...............................................................................................................................................................2113749.0037490039611171644420237258100110140214211856242534154017835193334141000010200100000000004560415246266328422924282024305365361489528
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................2213607.0036074146124411821144400300000001201332419402138441660246223933304281141153054151123645003116111012815611137367295329260357413224451113101
..............................................................................................................................TAGCACCACATGATTCGGCTTAA...................................................................................................2313409.00340911711312311240000423400100050043130731316155421543126132305198841218411223437232000105000714135733676516425322945807267109129
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................2113147.00314734191488518327512011060000001400591324914136132262710531051122409020491923281614121117311521187711021780107311898927126108108129105102445213922
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................2112731.0027313533264511342018160000000000000830228910105645132723286575312635123443323333410341630022624162230111322401313151417
..............................................................................................................................TAGCACCACATGATTCGGCTTAAA..................................................................................................2412359.0023591011820120200000620000000002212335160250001900731252601049100210010120201000001200094472952304612196813123055398090
....................................................................GCCCGGATACTGTGTGTGTTGCAA----........................................................................................................................................................2411768.00176800110000100100000000000000120000303100210020000000000000000000000014012911428425690280270326364
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................2311633.0016331444541761062302026041341223452020143524861197423524272631402641300010322111153111001106409195563211198119182215173826
....................................................................GCCCGGATACTGTGTGTGTTGCG.............................................................................................................................................................2311434.001434112021122123105100000000050241071471215921110351011251816201428814943510051330410253216014479851071882989793430
..............................................................................................................................TAGCACCACATGATTCGGCTTTA...................................................................................................2311416.00141631193361766000012300000040034252030212427115133734336339318475354628411187470011461004146486502842332040393726255275
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................2111182.00118221835125256010120000010000801880103222118000205630747730997764129331000413717333937212060245112730
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................1911177.001177253328281402000002010232122011211419242186253022924232083433603335464143110434405643939187662604563511520213859
....................................................................GCCCGGATACTGTGTGTGTTGCA.............................................................................................................................................................2311167.0011670000000000003010000000000011000100000000000000000000000000000100070633900000132250227234243
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................2011069.001069059052350400000210000001004327710031058456100000000010000010002110711200922511501014
.....................................TC-AACA-----------GCTGTACAACGAA....................................................................................................................................................................................191520.0052000101240000022000100400523592102810405600000000000000000000400000404053283527123732424104541
..............................................................................................................................TAGCACCACATGATTCGGCTTTAA..................................................................................................241414.0041410451440000000000000001004241019413551201022191315100000000000200000002000344445147141408851317
....................................................................GCCCGGATACTGTGTGTGTTGCAA----A.......................................................................................................................................................251385.00385000000000000310000000000000000001011010000000000000000000000000003335273000101946577581
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................201385.0038510911020000000000000100210420101111119685001100010000100000011000003034150110001544465561
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................201333.00333331465109100000000000000010001000220400000031010000010000101000000000072000012520110
..............................................................................................................................TAGCACCACATGATTCGGCTTCC...................................................................................................231268.0026837033114150000000000000230072112221372102300006210000000000000000010002050000110261000000
..............................................................................................................................TAGCACCACATGATTCGGCTTAT...................................................................................................231256.00256009730100000100000003005557411115301168918616700000000101010100012120901013330142311044
..............................................................................................................................TAGCACCACATGATTCGGCTTCA...................................................................................................231246.0024620143204000000010000050080013101161251021016141340000000000010000000400042813120010004151268
..............................................................................................................................TAGCACCACATGATTCGGCTTCT...................................................................................................231243.00243130714300000000000000220040132303214470201020411000000000000000001000500050000001500311
..............................................................................................................................TAGCACCACATGATTCGGCTTTC...................................................................................................231241.002418016151100000000000000100085165181910362601121112000000000000000000010400044222224722036
..............................................................................................................................TAGCACCACATGATTCGGCAA.....................................................................................................211211.0021100106000000000000000000022141000010325550100000000000000000000000023257000000425212929
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................181196.001960030104100100000000030158710851046100128118111000000000000000000001006171142000000111410
....................................................................GCCCGGATACTGTGTGTGTT................................................................................................................................................................201153.001530022000012010100000000010001011010120100000000000000000000030000091013100010717162533
.................................................................................................................................CACCACATGATTCGGCTT.....................................................................................................181150.00150610101102010000100000010042104110010232010000001000000100130202000143115149482140010
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................221148.0014810215200000001000000000041028100035179225100000000000000000000000106318303000103200
..............................................................................................................................TAGCACCACATGATTCGGCTAAA...................................................................................................231145.0014500241100000001000000000064210100002034332300000000000000000000000004084100000100012
..................................................................................................................................ACCACATGATTCGGCTT.....................................................................................................171133.001330000000000000000000000000000000000000000000000002010000320000000118111700000041131221
................................................................................................................................GCACCACATGATTCGGCTT.....................................................................................................191126.0012603435302000001000000000123044110043222460000000000000000110011001200024435101021
....................................................................................................................................CACATGATTCGGCTT.....................................................................................................151124.0012400000000000000000000000000000000000000001753057818611813215461400000000000000000000
...................................................................................................................................CCACATGATTCGGCTT.....................................................................................................161108.0010800000000000000000000000000000000000000007106414421441555205231500000000000000000000
....................................................................GCCCGGATACTGTGTGTGTTGA..............................................................................................................................................................221107.0010700000000010010000000000101000000000020000000000000000000000000000813711100159102421
....................................................................GCCCGGATACTGTGTGTGT.................................................................................................................................................................191104.00104000000001000000000000000010000000000100000000000000000000000000009614131123128121217
....................................................................GCCCGGATACTGTGTGTGTTGAAA----........................................................................................................................................................24192.009200000000000000000000000010000000000010000000000000000000000000000414624201481561410
..............................................................................................................................TAGCACCACATGATTCGGCTCT....................................................................................................22191.009112022031002000000000060010110312416010030210000001000000000000001000100000011001102
....................................CTC-AACA-----------GCTGTACAACGAA....................................................................................................................................................................................20189.0089000110100000020000000000000100005003022000000000000000000000000001681627835121011
..................................................................................................................................ACCACATGATTCGGCTTT....................................................................................................18188.0088230020500000001000000003201100011021200100000000000000000000000012037661291120001
...............................................................................................................................AGCACCACATGATTCGGCTTT....................................................................................................21186.008600735000000000000000000000000000020100001000000000000000000000000001100000000011
..............................................................................................................................TAGCACCACATGATTCGGCG......................................................................................................20178.0078153800000000000000000000000000000000000000001010010002241011101000022001010200100
..............................................................................................................................TAGCACCACATGATTCGGCTTGT...................................................................................................23172.00723063013000000000000010011010133621122030000000000000000000000000182242021011013
....................................................................GCCCGGATACTGTGTGTGTTGCGC----TG......................................................................................................................................................26169.006910000000000000000000000000010000000000000000000000000000000000001000101660181600000
..............................................................................................................................TAGCACCACATGATTCGGCTTTAG..................................................................................................24165.0065002110000000000000000000100013111001003000000000000000000000010001014500010031158
....................................................................GCCCGGATACTGTGTGTGTTGT..............................................................................................................................................................22163.0063000000000001220000001000100001000000111000000000000000000000000003531002101381411
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................22159.00591081001000001000000010011231351530111490000000001000000000000000300000000010000
..............................................................................................................................TAGCACCACATGATTCGGCTTCG...................................................................................................23158.00587101000000000000000030011010101102001010010000000001000000100100042047142501020
....................................................................GCCCGGATACTGTGTGTGTTA...............................................................................................................................................................21157.00570000000000000100000000000001000000101000000000000000000000000000076700000038877
..................................................................................................................................ACCACATGATTCGGCTTA....................................................................................................18152.00521000100000000000000000000010000110110030000000000000000000000000002063636840022
..............................................................................................................................TAGCACCACATGATTCGGCTTTTA..................................................................................................24145.00450021000000000000000000001020603410110001000000000000010000000000063000000003315
..............................................................................................................................TAGCACCACATGATTCGGCTTTTC..................................................................................................24145.00451022111000000000000040010020542803010002000000010000000000000000000100011001000
.............................................................................................................................GTAGCACCACATGATTCGGCTT.....................................................................................................22144.004400240000000000000000000000001000000010000000000010011100100000000000000000003181
..............................................................................................................................TAGCACCACATGATTCGGCTTTCC..................................................................................................24143.004310100000000000000000000011000563804000000000000000000000000000100100000200000000
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................19140.004000282100100000000000000001100000010100100000000000000000000000000200000010000000
....................................................................GCCCGGATACTGTGTGTGTTGAA.............................................................................................................................................................23139.00390000000000000000000000000000000000000000000000000000000000010000034612000064255
..............................................................................................................................TAGCACCACATGATTCGGCTTTTG..................................................................................................24132.00320030000000000000000010010000242300000100000000000000000000000000030230201002011
..............................................................................................................................TAGCACCACATGATTCGGCTTCAA..................................................................................................24131.00310020000000011000000000030000000010002300000000000000000000000000073000020011022
..............................................................................................................................TAGCACCACATGATTCGGCTTGA...................................................................................................23131.00312232000000000000000010011000000000000100000000000000000000000000004201000012152
..............................................................................................................................TAGCACCACATGATTCGGCTGG....................................................................................................22130.003062100000000001000000000000000000000000000000000000000000000001000000001000000000
....................................................................GCCCGGATACTGTGTGTGTTT...............................................................................................................................................................21128.00280000100011011100000000010101000000200000000000000000000000000000023400000011033
..............................................................................................................................TAGCACCACATGATTCGGCTTACA..................................................................................................24127.00270000001000000000000000010101000000058520010000000000000000000000001000000001000
..............................................................................................................................TAGCACCACATGATTCGGCTTAAC..................................................................................................24127.00270011000000000000000000000000000010010000000000000000000000000000066300000010124
..............................................................................................................................TAGCACCACATGATTCGGCTTTCA..................................................................................................24126.00260022100000001000000000030002010000111001000000000000000000000000003000010001041
....................................................................GCCCGGATACTGTGTGTGTTAAA.............................................................................................................................................................23126.00260000000000000000000000000000000000001000000000000000000000000000045200000002057
..............................................................................................................................TAGCACCACATGATTCGGCTTAAG..................................................................................................24126.00260010000000000000000000021010000010102000000000000000000000000000023022001322000
....................................................................GCCCGGATACTGTGTGTGTTGCAT----........................................................................................................................................................24126.00260000000000000000000000000000000000000000000000000000000000000000001100000054546
....................................................................GCCCGGATACTGTGTGTG..................................................................................................................................................................18125.00250001000100000000000000100000020100000010000000000000000000000000000120502012023
..............................................................................................................................TAGCACCACATGATTCGGCTGT....................................................................................................22124.00241301100001000000000110000000111001110011001000000000000000001000020000001010001
....................................................................GCCCGGATACTGTGTGTGTTAA..............................................................................................................................................................22124.00240000000000000000000000000000000000000000000000000000000000000000003600000053043
..............................................................................................................................TAGCACCACATGATTCGGAA......................................................................................................20122.00220000000000000000000000000000000000000000000000000000000000000000033300000002074
..............................................................................................................................TAGCACCACATGATTCGGCTTAC...................................................................................................23122.00220012101000000000000000010021100110101020000000000000001001000000011000000100001
...............................................................................................................................AGCACCACATGATTCGGCTTA....................................................................................................21122.002201122001000000000000000000010000020000000000000000000000000000002000000000001000
....................................................................GCCCGGATACTGTGTGTGTTGCAG----........................................................................................................................................................24120.00200000000000000000000000000000000000000000000000000000000000000000002000000003627
...............................................................................................................................AGCACCACATGATTCGGCTTC....................................................................................................21119.001900161000000000000000000000000000000000010000000000000000000000001000000000000000
.......................................................................CGGATACTGTGTGTGTTGCG.............................................................................................................................................................20118.00180000000000000000000000000000010000000000000000000110000000000000000050043300000
..............................................................................................................................TAGCACCACATGATTCGGAAA.....................................................................................................21117.00170000000000000000000000000000000000001000000000000000000000000000023000000003143
...................................................................................................................................CCACATGATTCGGCTTA....................................................................................................17116.00160000000000000000000000000000000000000000000100000000000000000000011400000022131
..............................................................................................................................TAGCACCACATGATTCGGCTTCTC..................................................................................................24116.00165010110000000000000000000100000201000000000000000000000000000000000000201000001
..............................................................................................................................TAGCACCACATGATTCGGCTTGAA..................................................................................................24116.00160000000000001000000000000010000100000110000000000000000000000000032100000001031
..............................................................................................................................TAGCACCACATGATTCGGCTCA....................................................................................................22116.00160001200000000000000000001000001200022100000000000000000000000000020000000000110
..............................................................................................................................TAGCACCACATGATTCGGCTTATA..................................................................................................24115.00150010000000000000000000010010110000023110000000000000000000000000020000000001000
....................................................................GCCCGGATACTGTGTGTGTTGCT.............................................................................................................................................................23115.00150002000000000000000000000000000000000000000000000000000000000000012200000001322
.....................................................................CCCGGATACTGTGTGTGTTGC..............................................................................................................................................................21114.00140020000000000000000000000000000000000000000000000000000000000000000210102000132
..............................................................................................................................TAGCACCACATGATTCGGA.......................................................................................................19114.00140000000010000000000000010000000000000100000000000000000000000100031000000011013
..............................................................................................................................TAGCACCACATGATTCGGCCC.....................................................................................................21114.00143004000000000000000020000000000000000000000000000000000000000000000000003010001
....................................................................GCCCGGATACTGTGTGTGTTGCC.............................................................................................................................................................23113.00130000000000000000000020000010110001000000000000000000000000000000001000000102120
..................................................................................................................................ACCACATGATTCGGCTTC....................................................................................................18113.00134000100000000000000000000000000100000000000000000000000000000000000000103300000
...................................................................................................................................CCACATGATTCGGCTTT....................................................................................................17113.00130000000000000000000000000000000000000000012101000011010100000000000100000010011
...................................................................................................................................CCACATGATTCGGCT......................................................................................................15112.00120000000000000000000000000000000000000000002001101140001001000000000000000000000
..............................................................................................................................TAGCACCACATGATTCGGCTGA....................................................................................................22112.00121300000000000000000000010000001000100010000000000000000000000000010100100000001
......................................C-AACA-----------GCTGTACAACGAA....................................................................................................................................................................................18112.00120000000000000000000000020000000000000000000000000000000000000000000012030300010
.....................................................................CCCGGATACTGTGTGTGTTGCG.............................................................................................................................................................22112.00120020000000000000000000000000000000000000000000000000000000000000000021110500000
..............................................................................................................................TAGCACCACATGATTCGGCAAA....................................................................................................22111.00110000000000000000000000001010000000001000000000000000001000000000003000000003100
..............................................................................................................................TAGCACCACATGATTCGGCAC.....................................................................................................21110.00100001000000000000000000000000000000000000000000000000000000000000011000000001231
droGri2
T------CCTTGACGAATGTCAAAT-G-----------------------------CTGTACAGTGAAGCCCGGATTCTGTGTGTGCTGCGTTTGCTGATTTGCCATACACATAAATA----TACGTAGCACCACATGATTCGGCTTCGTGGTGCTAGCA------ACTC------CATCGCCAGTT------A--------------------GATA--GA---------------------TAAATSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................2112162.0021621466696
..............................................................................................................................TAGCACCACATGATTCGGCTTC....................................................................................................221229.00229127102
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................221211.0021117338
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................201141.0014110239
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................20190.0090900
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................19121.0021192
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................21116.0016151
..............................................................................................................................TAGCACCACATGATTCGGCTTCT...................................................................................................23116.001697
....................................................................GCCCGGATTCTGTGTGTGCTGCG.............................................................................................................................................................23115.0015114
..............................................................................................................................TAGCACCACATGATTCGGCTTCA...................................................................................................23113.001358
...............................................................................................................................AGCACCACATGATTCGGCTTT....................................................................................................21113.0013130
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................18111.0011110
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................23111.0011110
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................2216.00633
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................1915.00550
...............................................................................................................................AGCACCACATGATTCGGCTTC....................................................................................................2115.00550
..............................................................................................................................TAGCACCACATGATTCGGCTTCC...................................................................................................2314.00422
................................................................................................................................GCACCACATGATTCGGCTT.....................................................................................................1914.00431
....................................................................GCCCGGATTCTGTGTGTGCTG...............................................................................................................................................................2114.00431
...................................................................AGCCCGGATTCTGTGTGTGCT................................................................................................................................................................2113.00321
...........................................................................................TTTGCTGATTTGCCATACACAT.......................................................................................................................................2213.00330
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................2113.00330
....................................................................GCCCGGATTCTGTGTGTGCTGCGT............................................................................................................................................................2412.00220
....................................................................GCCCGGATTCTGTGTGTGCTGC..............................................................................................................................................................2212.00211
...................................................................AGCCCGGATTCTGTGTGTGCTGCG.............................................................................................................................................................2412.00211
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................2212.00220
.............................................................................................................................GTAGCACCACATGATTCGGCT......................................................................................................2111.00110
......................................................................CCGGATTCTGTGTGTGCTGCG.............................................................................................................................................................2111.00110
............................................................................................TTGCTGATTTGCCATACACAT.......................................................................................................................................2111.00110
...............................................................................................................................AGCACCACATGATTCGGCTTCC...................................................................................................2211.00110
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................2011.00101
...............................................................................................................................AGCACCACATGATTCGGCTTG....................................................................................................2111.00110
...........................................................................................TTTGCTGATTTGCCATACAC.........................................................................................................................................2011.00110
...............................................................................................................................AGCACCACATGATTCGGC.......................................................................................................1811.00110
...................................................................AGCCCGGATTCTGTGTGTGCTGC..............................................................................................................................................................2311.00101
...............................................................................................................................AGCACCACATGATTCGGCTG.....................................................................................................2011.00110
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................2111.00101
.....................................................................CCCGGATTCTGTGTGTGCTGC..............................................................................................................................................................2111.00110
..............................................................................................................................TAGCACCACATGATTCGGCTTCG...................................................................................................2311.00110
.....................................................................CCCGGATTCTGTGTGTGCTG...............................................................................................................................................................2011.00110
...............................................................................................................................AGCACCACATGATTCGGCTTA....................................................................................................2111.00110
...........................................................................................TTTGCTGATTTGCCATACACATAAATA----T.............................................................................................................................2811.00110
...................................................................AGCCCGGATTCTGTGTGTGCTG...............................................................................................................................................................2211.00101
...............................................................................................................................AGCACCACATGATTCGGCTTTT...................................................................................................2211.00110
.............................................................................................................................GTAGCACCACATGATTCGGCTT.....................................................................................................2211.00110
droWil2
T------CCTTGACGAATGTCAAATTT----TCTGACTCCTGCAACTCATGTAAGGCTTCACCAAGCAGCCCGGATTCTGCGAGTGCTGCGC----TACAAC-----------AAGAACTAAGACGTAGCACCACATGATTCGGCTTCATGGTGAAGTACATCGCAACGT------CATCGTGTT--------G--------A------------AGA--CT---------------------TAATCSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................211202227.002022271763891330790086342997
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................2016359.006359449747966816501
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................2215641.005641410882743427236
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................2111899.001899181478043
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................2111240.001240121911163
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................2211082.001082743158715123
..............................................................................................................................TAGCACCACATGATTCGGCTTC....................................................................................................2211063.00106383161911151
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................201690.0069020657166
...........................................................................................C----TACAAC-----------AAGAACTAAGACG..........................................................................................................................201481.0048111337799
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................201441.004414410000
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................211440.00440307661588
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................221384.003843272031816
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................191311.003112252503130
....................................................................GCCCGGATTCTGCGAGTGCTGCG.............................................................................................................................................................231234.00234017517141
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................231125.0012576332113
..............................................................................................................................TAGCACCACATGATTCGGCG......................................................................................................20199.0099990000
.................................................................................................................................CACCACATGATTCGGCTT.....................................................................................................18181.0081698022
....................................................................GCCCGGATTCTGCGAGTGCTG...............................................................................................................................................................21149.00494142227
....................................................................GCCCGGATTCTGCGAGTGCTGC..............................................................................................................................................................22147.00470402221
..............................................................................................................................TAGCACCACATGATTCGGCTGG....................................................................................................22146.0046460000
................................................................................................................................GCACCACATGATTCGGCTT.....................................................................................................19145.00451427130
..............................................................................................................................TAGCACCACATGATTCGGCTTCT...................................................................................................23142.0042314142
...............................................................................................................................AGCACCACATGATTCGGCTTT....................................................................................................21138.0038137000
..............................................................................................................................TAGCACCACATGATTCGGCTTCA...................................................................................................23138.0038740198
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................18137.00371110178
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................19128.0028027001
.............................................................................................................................GTAGCACCACATGATTCGGCTT.....................................................................................................22125.0025222010
..............................................................................................................................TAGCACCACATGATTCGGCGG.....................................................................................................21122.0022220000
..............................................................................................................................TAGCACCACATGATTCGGCTTTG...................................................................................................23118.0018162000
..............................................................................................................................TAGCACCACATGATTCGGCTGA....................................................................................................22115.0015141000
..............................................................................................................................TAGCACCACATGATTCGGCTGT....................................................................................................22115.0015132000
..................................................................................................................................ACCACATGATTCGGCTTT....................................................................................................18213.0026251000
..............................................................................................................................TAGCACCACATGATTCGGCTTCC...................................................................................................23113.001373201
.................................................TGTAAGGCTTCACCAAGCA....................................................................................................................................................................................19112.0012000120
..............................................................................................................................TAGCACCACATGATTCGGCTTTC...................................................................................................23111.001128001
..............................................................................................................................TAGCACCACATGATTCGGCTTGT...................................................................................................23111.001190011
..............................................................................................................................TAGCACCACATGATTCGGCTTAT...................................................................................................23110.001023140
...............................................................................................................................AGCACCACATGATTCGGCTTA....................................................................................................2119.00908010
................................................................................................TACAAC-----------AAGAACTAAGACG..........................................................................................................................1918.00801070
....................................................................GCCCGGATTCTGCGAGTGCTGCGT----........................................................................................................................................................2418.00800224
..............................................................................................................................TAGCACCACATGATTCGGCTTCG...................................................................................................2318.00861010
...................................................................AGCCCGGATTCTGCGAGTGCTGC..............................................................................................................................................................2317.00700043
..............................................................................................................................TAGCACCACATGATTCGGCTTTCC..................................................................................................2417.00713003
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................2017.00722030
...............................................................................................................................AGCACCACATGATTCGGCTG.....................................................................................................2016.00606000
..............................................................................................................................TAGCACCACATGATTCGGCTGTT...................................................................................................2316.00660000
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................2215.00523000
..................................................................................................................................ACCACATGATTCGGCTTA....................................................................................................1815.00550000
..............................................................................................................................TAGCACCACATGATTCGGAC......................................................................................................2014.00440000
...............................................................................................................................AGCACCACATGATTCGGCTTC....................................................................................................2114.00404000
....................................................................GCCCGGATTCTGCGAGTGCT................................................................................................................................................................2014.00411101
..............................................................................................................................TAGCACCACATGATTCGGCCC.....................................................................................................2114.00440000
...................................................................AGCCCGGATTCTGCGAGTGCTGCG.............................................................................................................................................................2414.00401030
...................................................................AGCCCGGATTCTGCGAGTGCTG...............................................................................................................................................................2213.00321000
.................................................................................................................................CACCACATGATTCGGCTTT....................................................................................................1913.00311001
..............................................................................................................................TAGCACCACATGATTCGGCTTCCC..................................................................................................2413.00303000
....................................................................GCCCGGATTCTGCGAGTGCTGT..............................................................................................................................................................2212.00200002
..................................................................CAGCCCGGATTCTGCGAGTGCTG...............................................................................................................................................................2312.00210010
...................................................................................................................................................CATGGTGAAGTACATCGC...................................................................................1812.00200020
..............................................................................................................................TAGCACCACATGATTCGTT.......................................................................................................1912.00201001
.......................................................................................................................TAAGACGTAGCACCACATGATTCGGCT......................................................................................................2712.00211000
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................2212.00210010
..............................................................................................................................TAGCACCACATGATTCGGCTTAG...................................................................................................2312.00211000
...................................................................AGCCCGGATTCTGCGAGTGCT................................................................................................................................................................2112.00200110
...........................................................................................C----TACAAC-----------AAGAACTAAGAC...........................................................................................................................1912.00200020
......................................................................................................................CTAAGACGTAGCACCACATGATTC..........................................................................................................2412.00200110
.....................................................................CCCGGATTCTGCGAGTGCTGCG.............................................................................................................................................................2212.00202000
.......................................................................................................................TAAGACGTAGCACCACATGATTCGGC.......................................................................................................2612.00202000
...............................................................................................................................AGCACCACATGATTCGGCTTCA...................................................................................................2212.00200011
...................................................................AGCCCGGATTCTGCGAGTGC.................................................................................................................................................................2011.00100010
....................................................................GCCCGGATTCTGCGAGTGCTGG..............................................................................................................................................................2211.00110000
....................................................................GCCCGGATTCTGCGAGTGC.................................................................................................................................................................1911.00100010
dp5
T------CCTTGACGAATGTCAAACACCTC-GCAGGCTC-TGCAGC--AGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCGC----TGTGTT---------CTTAAAA----GCCGTAGCACCACATGATTCGGCTGCGTGGTCAGCCACAC--------------CTTCAGTAT---------------CCAAGTC------GCATTCATT---------------------AATACSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................211124101.0012410154078973786496774780340031115277123213
..............................................................................................................................TAGCACCACATGATTCGGCTGT....................................................................................................2216796.00679685522425137594376283553320
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................2016695.00669544492555048316932616217514
...............................................................................................................................AGCACCACATGATTCGGCTG.....................................................................................................2015429.0054291541165420000
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................2112052.002052261102679107753719520
..............................................................................................................................TAGCACCACATGATTCGGCTGA....................................................................................................221546.0054615405323314317720
....................................................................GCCCGGATTCTGTGTGTGCTG...............................................................................................................................................................211528.00528345751168184151
....................................................................GCCCGGATTCTGTGTGTGCTGCG.............................................................................................................................................................231526.005261251771096319131028
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................211519.0051984393871863000
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................191518.005181421914498141202114
..............................................................................................................................TAGCACCACATGATTCGGCTGC....................................................................................................221464.00464131889410445180200
..............................................................................................................................TAGCACCACATGATTCGGCTGTT...................................................................................................231400.00400183216182720170
...............................................................................................................................AGCACCACATGATTCGGCTGT....................................................................................................211365.00365036201000011
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................191274.00274027301000000
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................201199.001992110293010000
................................................................................................................................GCACCACATGATTCGGCTG.....................................................................................................191198.00198119500110000
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................211184.0018431512722962000
....................................................................GCCCGGATTCTGTGTGTGCTGC..............................................................................................................................................................221165.00165110616111333426
..............................................................................................................................TAGCACCACATGATTCGGCTGG....................................................................................................221154.0015420782129210210
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................221127.001271763111251000
.............................................................................................................................GTAGCACCACATGATTCGGCTG.....................................................................................................221122.00122012200000000
....................................................................GCCCGGATTCTGTGTGTGCT................................................................................................................................................................20186.008617310541010
..............................................................................................................................TAGCACCACATGATTCGGCTGTAA..................................................................................................24178.007807331010000
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................18177.007703311101415021
..............................................................................................................................TAGCACCACATGATTCGGCTGTA...................................................................................................23159.005934353001400
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................20157.005704921300200
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................20157.005705601000000
..............................................................................................................................TAGCACCACATGATTCGGCTGAA...................................................................................................23150.005013583000300
.................................................................................................................................CACCACATGATTCGGCTG.....................................................................................................18149.004903200476000
..............................................................................................................................TAGCACCACATGATTCGGCAA.....................................................................................................21138.003813430000000
.....................................................................CCCGGATTCTGTGTGTGCTG...............................................................................................................................................................20138.003803800000000
..............................................................................................................................TAGCACCACATGATTCGGCTGAAA..................................................................................................24136.003613220100000
..............................................................................................................................TAGCACCACATGATTCGGCTGTC...................................................................................................23130.00306715035030
...............................................................................................................................AGCACCACATGATTCGGCTA.....................................................................................................20128.002802800000000
...............................................................................................................................AGCACCACATGATTCGGCTGTT...................................................................................................22126.002602600000000
...............................................................................................................................AGCACCACATGATTCGGCTGA....................................................................................................21125.002502401000000
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................22124.002401461101001
.....................................................................CCCGGATTCTGTGTGTGCTGCG.............................................................................................................................................................22122.002201900010002
....................................................................GCCCGGATTCTGTGTGTGCTA...............................................................................................................................................................21118.001801710000000
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................22116.001601330000000
....................................................................GCCCGGATTCTGTGTGTGC.................................................................................................................................................................19116.001601021020010
....................................................................GCCCGGATTCTGTGTGTGCTGT..............................................................................................................................................................22115.001501110002010
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................23114.00140922010000
...............................................................................................................................AGCACCACATGATTCGGCTGC....................................................................................................21113.001301300000000
..............................................................................................................................TAGCACCACATGATTCGGCTGTTA..................................................................................................24112.00121830000000
................................................................................................................................GCACCACATGATTCGGCTGT....................................................................................................20112.001201110000000
..............................................................................................................................TAGCACCACATGATTCGGCTGTCC..................................................................................................2419.0095002011000
..............................................................................................................................TAGCACCACATGATTCGGCTTAA...................................................................................................2319.0090440100000
.....................................................................CCCGGATTCTGTGTGTGCTGC..............................................................................................................................................................2119.0090900000000
.............................................................................................................................GTAGCACCACATGATTCGGCT......................................................................................................2118.0080800000000
..............................................................................................................................TAGCACCACATGATTCGGCTAAA...................................................................................................2318.0080700001000
..............................................................................................................................TAGCACCACATGATTCGGCTGGT...................................................................................................2318.0080000240200
..............................................................................................................................TAGCACCACATGATTCGGT.......................................................................................................1917.0070700000000
..............................................................................................................................TAGCACCACATGATTCGGCTGCA...................................................................................................2317.0070110311000
..............................................................................................................................TAGCACCACATGATTCGGCTGCT...................................................................................................2317.0070000511000
...............................................................................................................................AGCACCACATGATTCGGCTAA....................................................................................................2117.0070700000000
.....................................................................CCCGGATTCTGTGTGTGCT................................................................................................................................................................1917.0070700000000
...............................................................................................................................AGCACCACATGATTCGGCTTT....................................................................................................2116.0060600000000
.............................................................................................................................GTAGCACCACATGATTCGGCTGT....................................................................................................2316.0060600000000
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................2215.0050410000000
....................................................................GCCCGGATTCTGTGTGTGCTGCGC----........................................................................................................................................................2415.0050400000010
....................................................................GCCCGGATTCTGTGTGTGCTT...............................................................................................................................................................2115.0050400010000
....................................................................GCCCGGATTCTGTGTGTGCTGA..............................................................................................................................................................2215.0050210000110
....................................................................GCCCGGATTCTGTGTGTGCTGCGT----........................................................................................................................................................2414.0040400000000
...............................................................................................................................AGCACCACATGATTCGGC.......................................................................................................1814.0040400000000
...............................................................................................................................AGCACCACATGATTCGGCTGAA...................................................................................................2214.0040400000000
....................................................................GCCCGGATTCTGTGTGTGCTGCC.............................................................................................................................................................2314.0040030010000
...............................................................................................................................AGCACCACATGATTCGGCAA.....................................................................................................2014.0040400000000
.................................................................................................................................CACCACATGATTCGGCTGT....................................................................................................1914.0040400000000
................................................................................................................................GCACCACATGATTCGGCT......................................................................................................1814.0040400000000
..............................................................................................................................TAGCACCACATGATTCGGCAC.....................................................................................................2114.0040220000000
...............................................................................................................................AGCACCACATGATTCGGCTGG....................................................................................................2114.0040400000000
...............................................................................................................................AGCACCACATGATTCGGCTGTA...................................................................................................2223.5070700000000
..............................................................................................................................TAGCACCACATGATTCGGCTGGC...................................................................................................2313.0030200010000
..................................................................................................................................ACCACATGATTCGGCTGT....................................................................................................1813.0031200000000
..............................................................................................................................TAGCACCACATGATTCGGCTGCTG..................................................................................................2413.0030100020000
...............................................................................................................................AGCACCACATGATTCGGCA......................................................................................................1913.0030300000000
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................2213.0030210000000
..............................................................................................................................TAGCACCACATGATTCGGCGT.....................................................................................................2113.0030110100000
..............................................................................................................................TAGCACCACATGATTCGGAC......................................................................................................2013.0030021000000
..............................................................................................................................TAGCACCACATGATTCGGCG......................................................................................................2013.0031010100000
..............................................................................................................................TAGCACCACATGATTCGGCTGAT...................................................................................................2313.0030101100000
..............................................................................................................................TAGCACCACATGATTCGGCCT.....................................................................................................2113.0030111000000
..............................................................................................................................TAGCACCACATGATTCGGTA......................................................................................................2013.0030200100000
..............................................................................................................................TAGCACCACATGATTCGGCTGCC...................................................................................................2312.0020100010000
....................................................................GCCCGGATTCTGTGTGTGCTAAA.............................................................................................................................................................2312.0020200000000
droPer2
T------CCTTGACGAATGTCAAACACCTC-GCAGGCTC-TGCAGC--AGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCGC----TGTGTT---------CTTAAAA----GCCGTAGCACCACATGATTCGGCTGCGTGGTCAGCCACAC--------------CTTCAGTAT---------------CCAAGTC------GCATTCATT---------------------AATACSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................211118009.001180099513513758254527313631209
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................2012555.00255574176110022768046
..............................................................................................................................TAGCACCACATGATTCGGCTGT....................................................................................................2212290.0022906235423125180340
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................211959.0095972110863144112
...............................................................................................................................AGCACCACATGATTCGGCTG.....................................................................................................201803.00803177742325
..............................................................................................................................TAGCACCACATGATTCGGCTGA....................................................................................................221669.0066936011510451354
..............................................................................................................................TAGCACCACATGATTCGGCTGG....................................................................................................221377.00377302101212410
..............................................................................................................................TAGCACCACATGATTCGGCTGC....................................................................................................221354.0035421853910640
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................211331.003311721458330
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................191303.003032532576120
....................................................................GCCCGGATTCTGTGTGTGCTG...............................................................................................................................................................211152.001521538051480
....................................................................GCCCGGATTCTGTGTGTGCTGCG.............................................................................................................................................................231100.0010017819161822
..............................................................................................................................TAGCACCACATGATTCGGCTGTT...................................................................................................23185.0085372402157
.................................................................................................................................CACCACATGATTCGGCTG.....................................................................................................18184.00846580371
................................................................................................................................GCACCACATGATTCGGCTG.....................................................................................................19175.007546244100
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................20161.00615900011
..............................................................................................................................TAGCACCACATGATTCGGCTGAA...................................................................................................23155.00554291030
..............................................................................................................................TAGCACCACATGATTCGGCTGTA...................................................................................................23150.00503460370
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................21143.004324421120
...............................................................................................................................AGCACCACATGATTCGGCTGT....................................................................................................21143.00430430000
..............................................................................................................................TAGCACCACATGATTCGGCTGAAA..................................................................................................24141.00413280001
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................19141.00410390020
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................18134.003414214112
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................22132.00322161121
..............................................................................................................................TAGCACCACATGATTCGGCG......................................................................................................20126.00262400020
..............................................................................................................................TAGCACCACATGATTCGGCTGGT...................................................................................................23125.00251115170
..............................................................................................................................TAGCACCACATGATTCGGCTGTAA..................................................................................................24123.00231670000
....................................................................GCCCGGATTCTGTGTGTGCTGC..............................................................................................................................................................22122.0022342238
.............................................................................................................................GTAGCACCACATGATTCGGCTG.....................................................................................................22121.00210210000
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................20119.00194120120
..............................................................................................................................TAGCACCACATGATTCGGCTGTC...................................................................................................23115.0015310281
....................................................................GCCCGGATTCTGTGTGTGCT................................................................................................................................................................20114.0014030128
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................22114.00141200110
..............................................................................................................................TAGCACCACATGATTCGGCTGCT...................................................................................................23112.0012020190
..............................................................................................................................TAGCACCACATGATTCGGCAA.....................................................................................................21112.00120120000
...............................................................................................................................AGCACCACATGATTCGGCTGA....................................................................................................21111.00110110000
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................2217.007160000
..............................................................................................................................TAGCACCACATGATTCGGCTGGC...................................................................................................2316.006002130
...............................................................................................................................AGCACCACATGATTCGGCTA.....................................................................................................2016.006060000
..............................................................................................................................TAGCACCACATGATTCGGCTGCA...................................................................................................2315.005400010
..............................................................................................................................TAGCACCACATGATTCGGCAC.....................................................................................................2114.004310000
..............................................................................................................................TAGCACCACATGATTCGGCTCG....................................................................................................2214.004000040
...............................................................................................................................AGCACCACATGATTCGGCTGC....................................................................................................2114.004040000
.....................................................................CCCGGATTCTGTGTGTGCTGCG.............................................................................................................................................................2214.004020011
..............................................................................................................................TAGCACCACATGATTCGGCTGTAC..................................................................................................2423.507700000
...............................................................................................................................AGCACCACATGATTCGGCTGG....................................................................................................2113.003200010
.....................................................................CCCGGATTCTGTGTGTGCTG...............................................................................................................................................................2013.003030000
..............................................................................................................................TAGCACCACATGATTCGGCTGTTA..................................................................................................2413.003120000
..............................................................................................................................TAGCACCACATGATTCGGCTTAA...................................................................................................2313.003300000
.............................................................................................................................GTAGCACCACATGATTCGGCT......................................................................................................2113.003030000
....................................................................GCCCGGATTCTGTGTGTGCTA...............................................................................................................................................................2113.003030000
...........................................................................................C----TGTGTT---------CTTAAAA----GCCG..........................................................................................................................1813.003201000
....................................................................GCCCGGATTCTGTGTGTGCTGA..............................................................................................................................................................2213.003300000
..............................................................................................................................TAGCACCACATGATTCGGCTCT....................................................................................................2212.002010010
................................................................................................................................GCACCACATGATTCGGCT......................................................................................................1812.002020000
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................2212.002010010
..............................................................................................................................TAGCACCACATGATTCGGCTGAT...................................................................................................2312.002100100
..............................................................................................................................TAGCACCACATGATTCGGCTGTCA..................................................................................................2412.002100001
..............................................................................................................................TAGCACCACATGATTCGGT.......................................................................................................1912.002110000
..............................................................................................................................TAGCACCACATGATTCGGCTGCC...................................................................................................2312.002000020
....................................................................GCCCGGATTCTGTGTGTGCTGCGT----........................................................................................................................................................2412.002001010
..................................................................................................................................ACCACATGATTCGGCTGT....................................................................................................1812.002100100
..............................................................................................................................TAGCACCACATGATTCGGCTGTCC..................................................................................................2412.002200000
...............................................................................................................................AGCACCACATGATTCGGC.......................................................................................................1812.002020000
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................2212.002100010
...............................................................................................................................AGCACCACATGATTCGGCTAA....................................................................................................2112.002020000
.............................................................................................................................GTAGCACCACATGATTCGGCTGT....................................................................................................2312.002020000
...............................................................................................................................AGCACCACATGATTCGGCTGTT...................................................................................................2212.002020000
droAna3
T------CCTTGACAAATGTCATTCGC-----------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGAGCTGCGC----CGTTCT-----------TTCTA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAT--------------CATCCTGTT--------G-------------------------GCT---------------------GACACSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................211113852.0011385216244916411185177014961516
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................2019417.00941710166871268250138874
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................2116196.006196861667465
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................2214527.00452762134434619441182
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................2212851.00285110826653621417
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................2011624.001624116220100
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................2111591.0015914314783701617
..............................................................................................................................TAGCACCACATGATTCGGCTTAA...................................................................................................2311040.0010404898010002
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................201873.00873774981000
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................211766.00766186496558138
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................191722.0072215441016192121
..............................................................................................................................TAGCACCACATGATTCGGCTTC....................................................................................................221496.00496104706721
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................231271.0027164155131614
..............................................................................................................................TAGCACCACATGATTCGGCTTTA...................................................................................................231249.00249112303311
....................................................................GCCCGGATTCTGTGGGAGCTGCG.............................................................................................................................................................231215.0021596422123132
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................221202.002023085425454
..............................................................................................................................TAGCACCACATGATTCGGCTTAAA..................................................................................................241188.00188161675000
....................................................................GCCCGGATTCTGTGGGAGCTGC..............................................................................................................................................................221150.00150274198956
....................................................................GCCCGGATTCTGTGGGAGCTG...............................................................................................................................................................211128.00128336537515
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................181120.001204123513137
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................20198.00985827103
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................22159.00593551000
..............................................................................................................................TAGCACCACATGATTCGGCAA.....................................................................................................21158.00583541000
................................................................................................................................GCACCACATGATTCGGCTT.....................................................................................................19154.005424290001
.....................................................................CCCGGATTCTGTGGGAGCTGCG.............................................................................................................................................................22154.005424150348
..............................................................................................................................TAGCACCACATGATTCGGCTTTAA..................................................................................................24148.00483450000
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................19145.00453960000
.............................................................................................................................GTAGCACCACATGATTCGGCTT.....................................................................................................22138.00383420002
...............................................................................................................................AGCACCACATGATTCGGCTTT....................................................................................................21137.00373430000
..............................................................................................................................TAGCACCACATGATTCGGCTAAA...................................................................................................23131.00315242000
..............................................................................................................................TAGCACCACATGATTCGGCTGT....................................................................................................22129.00295211200
.....................................................................CCCGGATTCTGTGGGAGCTGC..............................................................................................................................................................21126.00265603111
..............................................................................................................................TAGCACCACATGATTCGGCTTAT...................................................................................................23125.00253170401
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................22116.0016390013
..............................................................................................................................TAGCACCACATGATTCGGCTTAC...................................................................................................23114.00140140000
..............................................................................................................................TAGCACCACATGATTCGGCTTTC...................................................................................................23112.00122100000
....................................................................GCCCGGATTCTGTGGGAGCT................................................................................................................................................................20112.0012290010
...............................................................................................................................AGCACCACATGATTCGGC.......................................................................................................18111.00111010000
..............................................................................................................................TAGCACCACATGATTCGGCCC.....................................................................................................21111.00110110000
.....................................................................CCCGGATTCTGTGGGAGCTG...............................................................................................................................................................20110.0010700102
..............................................................................................................................TAGCACCACATGATTCGGAC......................................................................................................20110.00100100000
....................................................................GCCCGGATTCTGTGGGAGCTGCGT----........................................................................................................................................................2419.009500022
....................................................................GCCCGGATTCTGTGGGAGCTGT..............................................................................................................................................................2219.009240111
..............................................................................................................................TAGCACCACATGATTCGGT.......................................................................................................1918.008210212
....................................................................GCCCGGATTCTGTGGGAGCTGCAA----........................................................................................................................................................2417.007250000
....................................................................GCCCGGATTCTGTGGGAGC.................................................................................................................................................................1917.007070000
..............................................................................................................................TAGCACCACATGATTCGGCTTTTA..................................................................................................2417.007060100
...............................................................................................................................AGCACCACATGATTCGGCTG.....................................................................................................2016.006600000
...............................................................................................................................AGCACCACATGATTCGGCTTA....................................................................................................2116.006420000
...............................................................................................................................AGCACCACATGATTCGGCTC.....................................................................................................2016.006060000
...............................................................................................................................AGCACCACATGATTCGGCTTAA...................................................................................................2216.006330000
.................................................................................................................................CACCACATGATTCGGCTT.....................................................................................................1816.006330000
....................................................................GCCCGGATTCTGTGGGAGCTGCA.............................................................................................................................................................2316.006060000
................................................................................................................................GCACCACATGATTCGGCTTT....................................................................................................2016.006310110
..............................................................................................................................TAGCACCACATGATTCGGA.......................................................................................................1916.006010023
................................................................................................................................GCACCACATGATTCGGCT......................................................................................................1815.005230000
...............................................................................................................................AGCACCACATGATTCGGCTTG....................................................................................................2115.005310001
....................................................................GCCCGGATTCTGTGGGAGCTGCGA----........................................................................................................................................................2415.005050000
..............................................................................................................................TAGCACCACATGATTCGGCG......................................................................................................2015.005131000
droBip1
T------CCTTGACAAATGTCATTCGC-----------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGGGCTGCGC----CGTTTT----TTT--CTGGCTA----ACCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAT--------------CATCTTGTA--------A-------------------------TTT---------------------GTCAASizeHit CountTotal NormTotal
No Reads
droKik1
T----GCCCTCGGCAAATGTTTTTCAC-----------------------------CTGCACCACGCAGCCCGGATTCTGTGGGGGCTGCGC----TGTTCC----CCT-TTCCGCCA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGCCAG--------------CATCCACG------------------GATCGCCACCCGG------AATTACCCGAAAAGTTCACAAAAAAGCSizeHit CountTotal NormTotal
No Reads
droFic1
T------CTTTGGCGAGTGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTTTGTGGGAGCTGCGC----TGTTTA----TAC--TCCAAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGCGCAGGACAG--------------CATCGGCTG--------TA---------------------GCCAT------------------------AAASizeHit CountTotal NormTotal
No Reads
droEle1
T----GCCCTTGGCGAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGGCGGCTGCGC----TGCTTC----TAC-TATCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG--------------CACCGGATT--------GC--------------------ATA--GT---------------------CAGAGSizeHit CountTotal NormTotal
No Reads
droRho1
T------CCTGGGCGAATGTCCTTCGC-----------------------------CTGCACCCCGAAGCCCGGATTCTGTGGAGGCTGCGC----TGCTTC----TTT-TCTCAAAT----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG--------------CATCGGCTT--------CC-------------------------AA---------------------AGCCASizeHit CountTotal NormTotal
No Reads
droBia1
T------CCTTGGTGAATGTCAATCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGAGGGCTGCGC----TGTTTC----TACCTCCCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAG--------------CATCGCGTGCTCCAACTA----------------------CA--GC---------------------CAACASizeHit CountTotal NormTotal
No Reads
droTak1
T------CCTTGGCGAATGTCACCCAC-----------------------------CTGCACCCCGCAGCCCGGATTTTGTGGGGGCTGCGC----TGTTTC----TGC-CGCCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG--------------CATCTAATC--------TC---------------------------------------------------TASizeHit CountTotal NormTotal
No Reads
droEug1
T----GTCCTTGGCGAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGAGGGCTGCGC----TGTTTG----TGA-TTCTAAAT----TCCGTAGCACCACATGATTCGGCTTCGTGGAGCAGGACAG--------------CATCAGATT--------TT--------------------CTCTTTT---------------------AAAACSizeHit CountTotal NormTotal
No Reads
dm3
T------CCTTGACGAATGTCATCCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTTC-----------CGTAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTACAGGATAT--------------CATCGGTTT--------TTGCTAGCAA------------ACGGGTA---------------------ATCACSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................2111759696.00175969600109929167263179773614142200955221167101695317696185899039163149175410898972730537245124743092205233032553873393615116372550104024714197518641052904705241141052227067000000000000000006312637851594170172256893722313356277632423310215941342331671568124312812812714591941187638524156128840961220151805252906161432510011931121549379916413231253259422396978202553296628232126980523059064680373837053863516535683043871225343747646275711344681675941427382017492153234620324191015696653864501208902128111813842150136923122383471255055833631691202012276147567781512751084132756209401101262164678020117439331210770363748152701584627564129683631611520612578842425564696865127509119927301762501002040247652698053138395492302593362746412090461348028112375286835343358338451050771127862163598459729051269381851183219585106536862482812090892771727310567115613130669130669635972078657131142259240681737163816492217205513759101915251007285218807586711427740680101725832805777662715052251440140658401190614834136861229140642312215981186232656514398160258645645612885714638213166972879151094311288216730
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................201226177.002261770000341012811211993286400141228122315316174831411457614411912652803442442962044138912981237722243624474982737121692792883000000000000000002742722541577152491201021182202147240162383551222021278944024398905921051316176011951031101200709825025341373214100020031615206617605083483484472492808618232662725236501103226167446047340110822008996425071128687130295107455337163214791355165299978307579340001682162214020009530140359180111855132184411731560457632266321621534376173164466351025342518721000184221129117101476406313517431325245638834725421426945777483447649545334415390224359414081746141610856492049154743235192163205276202003150421272141066322432603112532824161328172506383181151148419982846931624115761609469840221535650247013881347111343922112123172712791994172868559833071743337597117293086190938520
....................................................................GCCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................23166035.006603500002122314101040000003111000180300000226412513302935383041939911605148113800110000000000000000005239282825461373302696010672325062413135520124472031924545120341339311051226901110020301223057000012103088202192871113925522237123345150142175892110015232150108495033310160091726311113495313802161987240202525000002630020140281192103394278291193666146929641198256163276041500000724641013408387209193894632698217582118642722810753475324131255174669792464213221258425267769137413441876411234534126449419339730273946310214932583375261746873151044195418202713086320726271118454148366961544989731958261477624247148414364025326215381343852971
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................22155179.0055179000011974315293101300334660251717300000007405145415810156128302754305483149118432603000000000000000000000160160132985134851428521120193352134017351700263673430735266660711611792646946870631505013217040369610000021070221402781231698487140106871559180230105001003332231901812007588443073532248134217648115102111618829557014425114111582073584150000075171007000342202119298784901112371793733382511119926262691744111001931103122648419312749616511342620124319581931143435220522415292141150550197285459409324179322208970340413543316485366266633431980736634050672485615212531061717633399032849916192499811034450802296261194232534833012246362432919144285392393317455663644911380
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................22136273.003627300001013144002011002002969470126000000017524578545771285840159711731011135854210000000000000000000000011981171972842531583313407509824500462903249988820117938489501150403271619140001410100191631781121128375148667544263111340000046107262110288601110713112016445007248613036211341276002071854000019527250010041201979116292012776216171191589023612204919300192141953210749261376199394251818181462320273577594446245503994622375881164735594327565449864332219313762034241947514923178543941082313719872914833835124863962351043858606391227968195121391070
....................................................................GCCCGAATTATGTGGGAGCTGC..............................................................................................................................................................22124277.002427700000023210012000000780001310006101060438137961959438729224132531681072890032000000000000000000131248178124469876956615101281820001114010914524121923202132301933000000000000100000130110269244275264142841579415410918196132137100300009013106002000021060101003636132278360101171700000305101000043503328125026981513411516622860111165190212000010903615153147195132153149929828817757191317926118706675292111003418167133682481424360200925013462051115641711064241412631451671302813187634148508101513973779106580421246100921175337263538012210474433814335493046211534559
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................19120313.002031300000000000000541252300292321211518401195111222144028662877651412010433272751484760001151000000000000000007179574701152677002010141000000131424144621101533670001000042552531330000095441435410333332722275175596470030042114162792743012784301610311113931446443164121805533886234319720210144601000875022001025647178140334589401399810547235815811303931390000212123524224787981165881173269120546823556537840893971354226535103142188231841822025164493414230184906511321453146741671385405249693689844482478209856117931313624116275906671112391922526004591012720
....................................................................GCCCGAATTATGTGGGAGCTG...............................................................................................................................................................2118140.008140000000121000010000002720008000000018821102283210111310312671211202990003400000000000000000068310362619126600200225100000038264235391030316010000000000100000000030761319255482649785244521233413000001208804310000420100013020110121121919200306160000019510022002016564783472371642803623167620010000733205121881111182663020731096128152204918282425134835192101713076778412249413121535141179825196401825016413623112032519217171116211372568101212172558514743550
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................2117732.00773200005112151060516000000722030350000000713330817019741134101310106360000000000000000000000201816122591429176912840511047921006143914192019701143034051010102010010000020020103852276234113981126105220000030843274604101155169401413701296492711004134000003462006000702262311311153122269728381310100078131343901604210306155531311412139831158981278522311665986039101846164674650031087230338901800412840682042067516910861110071595391220260
.....................................................................CCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................2217631.00763100000009300212010000300204282240111021131412921133588510000000000000000000000013881101971712174223729322930106149016246051541037537227134041116031010001000110010110000181914831414183915812118300110220217025103051611232623521541623800423396000001100000320001001920112213031132086427734138644730114160000641126230242104633913131119022142335862320813418533161595122014745827136321382023272831410101431613111221914491111115342950261347448181508529178470133185981912681020815111702851150
..............................................................................................................................TAGCACCACATGATTCGGCTTC....................................................................................................2215642.00564200000000000000010100333200100000000053356012156110415141231000198106530000000000000000010201025098116010022202002200915211960035114074010000010550000500000281212663139100581260000071012226211031043020713009015038154710010140000041100000019992848612649910549171115110047210232010151312129211583333518154321108102031433231131819423835654396832520182131342422618021180511394795411650215134409419251825540191557263114131010711171221500
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................1813506.00350600000000000000002219006804125216430009147131415348111774381000122000000000000000006108804105666000000130000000210191141014031216300000001833014359000008141016581537880378602231171666213337023416951321241045564270624726590030211011031170001002216122350202346113711238132323000088103585203521215317311438710172111187622384644461716926478952412941132397118104982106217843938110112732917203563861451240040042753046990
..............................................................................................................................TAGCACCACATGATTCGGCTTAA...................................................................................................2312799.0027990000208840000300000027000000000000126311493237311206665430000000000000000000000011200842446351016200010117310021200172318290311710250020000100100100000200005264823101241441109179400000100000030000020104010000000342214000341000000836002000101111730199201024151059400700003203042020021000001001010000011014272122815245301141272210100014930001244142369601010126671720000000133102021525050330
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................2112786.002786000011201003060000001000017000000001222413810111464100000000000000000000000059421312104553024021100013407181165204200305100010102032000000010002213218121289100000412632617022123241214404536015024262000001000000440000002015712146661236202299247000054400874130020961820115810124831382123161242924147199441912516711273918743524507001059765713508921382132837311313101161819301621500942892119350
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................2011703.00170300001001000000000000010000123100000031104053003002592000063000000000000000000812990303735310300142000330067251514104013171010201000000000000120143321252611120000002901322323280187318418116111250502010020060020060000001004000712841126187042181123285004000032110212600203014203225522012786516462538721293756568312001122521904226190600818126237223181096400301230445320
................................................................................................................................GCACCACATGATTCGGCTT.....................................................................................................1911443.00144300000000000000000000260000000000000000000310000000001000000000000000000000004223233413179271761162051574001571373965596141132100000000000000010000000000021002111200030000003811201044020001010200003010403015000000000002000100013132123310460030000000011010020600100010101112000021573017342517621663654124104100052001038040221411095052004304200100101010000
.....................................................................CCCGAATTATGTGGGAGCTGC..............................................................................................................................................................2111245.00124500000000000101000000000001000000000210031042110203210200000000000000000000002003030014110002003341000000135170612113500000000000000101000000514109032365210515600000030010020000130200030003001311100000000000001100000010323031647515516130651000031113417401107053319415934255161340933228084210376441111131256001005516531193219221134268195118642916153212136262118121150
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................2111201.00120100001100431102010000010000000000003010162021010362020000000000000000000000005104401011103310010000000000846311002031010000001000100000000000022330121003111000005040025902000312014451640616040301000000000000130000001000362002102031104100000021063361312120110321421117871234133115416392824182450832715011121722202251614521833301262016210100212000200100310240
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................2311195.0011950000000010000200000022000040000000011020047232101110100000000000000000000000551203100045000000012000200122029172601301002100000003021000000000003406102210023100100805101033104000101021400011500115101000708600000410000001045244405781484177008000010210102511102142063202457524126158111081531266383365262795215203270114081781812001312101122421318841131041413026169650
..............................................................................................................................TAGCACCACATGATTCGGCTTAAA..................................................................................................2411158.001158000000100000000000001200000000000001431501371230235213000000000000000000000000000026626910000000030000000011100304008001000000000000000010000213117101231126023810000000000000000000000000000000031213000000300000720000000000532019221203036184300020000000101000000000000000010000000000121985641714674600000000060010918631023000000133683000000000000001803020000
....................................................................GCCCGAATTATGTGGGAGCTGCGT----........................................................................................................................................................2411035.0010350000000000000000000000000000000000011100100303102001000000000000000000000000040201136896001003021000100196105020000000000000000000100000000000531211475102005000003000203000001203000100301000003000001100000000000000826590180861283712009000010001727110311145531027147553075145126312220212320101325052213151211504663011400110929220215375125112541020811204178713220
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................2011007.0010070000001000000000000012020040000000431105026400009421010000000000000000000000000007000210000000000000000212050001001000000000000100000000000175961222202923000006031400500000010001000007104641117000010000001200000050010310321821614211100001003000111200330010401020321014206111611163211591257671270030234012193171207005241038205112339340000133329164210
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................221901.0090100000000000000000000000102300000000112020340112142223000000000000000000000000110010010021000000000000000030010000120510000120104000100000001020111003020000000000100061603010200122730001205233100010000000025000000000690334474411071030000020001513242114102120254020531133741579127811103775451091011532000006273101901044416410425424400150002029115100
.....................................................................CCCGAATTATGTGGGAGCTGCGC----........................................................................................................................................................231708.007080000000020000000000000000000000000020000012100102212000010000000000000000000001008247202420010002200100100603301011111000000000000000000000000122102243230200300000000000100000010000100030000000100000040000000000000213110021687219172031430000110112312000010201021011132203110032062124103440530225950050463120501225252258111243111199115032016421080
..............................................................................................................................TAGCACCACATGATTCGGCTTTA...................................................................................................231643.006430000001100000000000001110010000000010000073001005351100000000000000000000000010001212047600021000100000004342302120160020100000001000000000001711093141311433000001001001140000011100040000000291300000100000045000000030310104104542340001000000011003131001101061010120001313252072233623632623210172100014444231100032212242003023241001023200421110
....................................................................GCCCGAATTATGTGGGAGCT................................................................................................................................................................201622.0062200000000000000000000000000100000003130110103100100022000000000000000000000000011040300103200000100000000087339131000000000000000000000000000002550011302000200100020000023000000000000003010212000000006000000100000000065340047220120000000002000012000000000001000010016140122352140110614101000001001011110301116034000100110000200010032110
..............................................................................................................................TAGCACCACATGATTCGGCTTAT...................................................................................................231540.00540000000012000000000001211000000000010002100300102311300000000000000000000000011000500411100000112100000001300110100000101000000010000000000002514011211000410000010000006000010010100000010365220004020000002200000003021710478513352000420001001101000100400002002010101000005294274815462141100112000027333200110014221120000004001020310020150
..............................................................................................................................TAGCACCACATGATTCGGT.......................................................................................................191464.0046400000000000000001000100002000000000200032160110514420000000000000000000000000000001000000000000000001000001000000000100000000003000000000002211341100030312000000000003901210110038000260120120010010200000000001200101427222711420226320000212103011042041621025143310724145103011300293092333311020000016102410303010002001021211155111525880
..............................................................................................................................TAGCACCACATGATTCGGCG......................................................................................................201455.00455000000000000010000000000001000000030000000000000100000000000000000000000000000000000000300000000000000001120000000000000000000010000100000000200100010001000000220011110000001007742000530302016000000000000000000020100010000000011004000000000301100301000001120000020011329172115205481712131375110101000112142030036001000010070201000000000230
.................................................................................................................................CACCACATGATTCGGCTT.....................................................................................................181410.00410000000000000000000001200000000000001100100100000100100000000000000000000000047580000000000000000000000001000000000000000000000000000000000203000014241107000000103010110002000012000000124500000200000050000011000000531430000000000700100000410000000000000000002110000022230020862911051409301100106100102013020114034071001301100000301200110
....................................................................GCCCGAATTATGTGGGAGCTGCA.............................................................................................................................................................231392.003920000000110000000000000000000000000010301001112011151000000000000000000000000000009801211000000000000000333100001001500000000000000000000000031274022211010100000000000000000000000000000000000000000000000000000000020031114050512400020000000001000000001200000002000211001181741821429111100200270015158414012002413014150020212060101401015130
..............................................................................................................................TAGCACCACATGATTCGGCTTATC..................................................................................................241371.00371000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027890000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................201365.0036500000000000000000000000010100000003000110030000000000000000000000000000000003001000000000000000000000000102010000100000000000000000100000000010000110001000000000000100000000000021102011101011001000000000000000012035100000000140010000030010000001000100011101000311130244353276431422117100030100056630800670461121101334210000122134140
....................................................................GCCCGAATTATGTGGGAGCTGCGA----........................................................................................................................................................241327.0032700000000000000000000000000100000000000000100010000000000000000000000000000000000034216020000002000000100601102000102400000000000000000000000004480023200100000000000000010000000001000000000000200000000000000000000030010072337254500210000100020000000102001010010000111231117655521032201000110000101411809000301015251714922000100101313020
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................191255.00255000000000000000000000000061100000000000010000000010000000000000000000000000000200010000010000000000000400143000000000000000000000000000000000000002010000020000000000022000021020143000020440001300000000000000000000000210022020020000000001110000000400111001000001000401048414236192110000000000000004100000002024211000100000000000002000
....................................................................GCCCGAATTATGTGGGAGCTGCT.............................................................................................................................................................231243.002430000000000000000000000000000000000000010010100100121000000000000000000000000000004470211001000000000000703100000000000000000000000000000000022000121200110000003001000000000000000000000000000000000000000100000000210010200101001000000001000341400102002301213110001324212052904160252200001401122001050140012060110001440000100010111120
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................221228.00228000000020000000000001000000000000000120101100000002200000000000000000000000002000507051000000100000000005400000100000000000000000000000000001600100000000000000000000000000010000000000000020200000000000002000000000001001212200000000000200000000000000000000000010001000122322443212000000000310002210160000011314000000000000001101000000
....................................................................GCCCGAATTATGTGGGAGCTGT..............................................................................................................................................................221210.0021000000000000000000000000000000000001000010000000010210000000000000000000000000100000201210000000100000004311030000000000000000000000000000000121001102000100000002000001001000000000000000000010000001000000100000001021231544436230003000001000104100005010003100011060302000731268010500000011000200125110014065110130000000000000113020
..............................................................................................................................TAGCACCACATGATTCGGCTTCA...................................................................................................231209.0020900000000000000000000100000100000000010010110000120100000000000000000000000000010000001100000000000000000000000000010000000000001000000000000000101011000000000000000000000000000000000010000000000000000002000000003030000012020120000000000010000000001000010000100100000011953722521810000000060000237160300124311002100001000000000001130
.............................................................................................................................GTAGCACCACATGATTCGGCTT.....................................................................................................221204.0020400000000100000000000010001000000000001000000001100110000100000000000000000000001000300010000000000000000010000000000000000000000000000000000010001000000000000100000011000001000020000000010010001000000000000000000011010000000030000000010000120000001000000012000207031031121312061522010000017310200718000023043110211501100010010121140
....................................................................GCCCGAATTATGTGGGAGCTGCGC----........................................................................................................................................................241196.00196000000000000000000001010000000000001000000000000010000001000000000000000000000000000200000000000000000000400000000000000000000000000000000003200100010030000000008000000000000000010000000000000000000000000000000300120021100001210100000000010000000200000000000000021001050401020020200101300021022405000342940213001724100112101001210
..............................................................................................................................TAGCACCACATGATTCGGCTTCT...................................................................................................231168.001680000000000000000000000000010000000001000112000001110000000000000000000000000100000003000000000000000000000000000000000000000000000000000000002000100000010000000000000000000000000000000000100000000000000000000000001400003000100001000000000000000110000401100000212120121172194300102100300002000101416130000002010101201000000000100130
..............................................................................................................................TAGCACCACATGATTCGGA.......................................................................................................191153.001530000000000000000000020000150000000100000024011004550000000000000000000000000020000010000000000000000000000000000000011010000000000000000000021010100000201000000000000100000020002000000000000000000000000010000000023110150011000010000000000210000100150000100010112103010202031103408100020001002100301190000000001000000301000111030
....................................................................GCCCGAATTATGTGGGAGCTGCC.............................................................................................................................................................231152.00152000000000000000000000000000000000000000013100100000000000000000000000000000000000020000000100000000000000000000000000000000000000000000000011100100110010000000180000000000000000000000000000000000000000000000000010000010000000000000000000012100010000020321100000001130312371612012110000111012020220310003020000100133000000000010000
.....................................................................CCCGAATTATGTGGGAGCTGCGT----........................................................................................................................................................231145.001450000000110000000000000000000000000000000001000000201000000000000000000000000110200040001000000100000100300100000100000000000000000000000000011000010102006000000300100140000000100201000000000000000010000000000000101200010005222022000001000000100000201020001010101010100000000000320100001000000022000001011230103414100900100611310
..............................................................................................................................TAGCACCACATGATTCGGCTCT....................................................................................................221130.0013000000000000000000000000000100000001000000000000000100000000000000000000000000000000000001000000100000001000000000000000000000001000000000000000000000000000000001000021000000000000000010110000000000000000000000010101100000000010040000001001001001001100042101110300000036112222031001300002000005431030001110100100000200000000201330
....................................................................GCCCGAATTATGTGGGAGC.................................................................................................................................................................191127.001270000000000000000000000000000000000120001100010000111000000000000000000000000040100000201010000011000000071891000101000000000000000102100000021000121022000000000000000000000000000000000100010000000000000000000000000562800541000000100000000000000000000010100100014110221000000000301000000000100000000010000000000000000000000000000
..............................................................................................................................TAGCACCACATGATTCGGCAA.....................................................................................................211127.001270000000200110000000011000000000000000110041000011100000000000000000000000000000011400500000100010000000000000002001000000000000000000000000011271000200130000000000000100000000000000000001603000000000000120000000010000020102010000000000000000000000000000000001000001000702415020000000005100101100010010057000000000000000000100000
..............................................................................................................................TAGCACCACATGATTCGGCTTCG...................................................................................................231123.0012300000000000000000000000000000000000000100100000000010000442390000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000100000000000000010000000100000001000000230602020010200000000100201000001000003012100300100100001100
....................................................................GCCCGAATTATGTGGGAGCTGCAA----........................................................................................................................................................241118.00118000000010000000000000000000000000000010100010000000000000000000000000000000000000410030000000001000000000000000000000000000000000000000000001410330000000300000000000000000000000000000000000010000000000000000000000010000010412100000000000000000000000000000000000000000021221836060000000001000011502000000044000000000000002100000000
..............................................................................................................................TAGCACCACATGATTCGGCTTTC...................................................................................................231116.001160000000000000000000000000000000000000000000000100012000000000000000000000000000100003121000001000000000233000000000000000000000000000000000013000000010300000000000000100000000000010001000030000000000000000000000002311102231400001100000000110000000000000000001020000100217015232000100011000003113000010001000100000000000010011130
..............................................................................................................................TAGCACCACATGATTCGGCTTTAA..................................................................................................241116.0011600000020000000000000010000000000000010000422000010000000000000000000000000001001040115000000000300000003010000020000000000000000000000000000100300001000000000000000000000000000000000000000100000010000000000000000001001010200100000000100001000000000000000000000000000103010205100000000200001344700000013104000000001000000000020020
....................................................................GCCCGAATTATGTGGGAGCTGCGC----C.......................................................................................................................................................251112.0011200000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000020000000000000000010000000000000000000000000000000000000000000020003002002000000000000000000000000000000000000000000000000100000000000400010121601700004243000010800000002200000000
..............................................................................................................................TAGCACCACATGATTCGGCTTAC...................................................................................................231105.0010500000000000000000000010000000000000000100010110000100000000000000000000000000100000012100000000000000003211000110010000000000000000010000000010000000010000000000000000000000000001000000012000000000000000000000000002000010010000011030011000000000000010000000000000100001925212130010000000001003510000000142000000000000000100000010
..............................................................................................................................TAGCACCACATGATTCGGCTAAA...................................................................................................232103.0020600000000000001000000110000000000001001100000000000001000000000000000000000000000000303000000000000000000000100000000000000000000000000000000130310100000000000000000000000000000000000000002100000000000000400000000000000020100220000000000000000000000000001000000000001051333166101600000000000000325310000001014000000000000001200000000
.............................................................................................................................GTAGCACCACATGATTCGGCT......................................................................................................21196.0096000000000000000000000000010000000000000000100000010000000000000000000000000000000100000000000000000000000200000000000000000000000000000000002050000000000000000000000000000001000000000100020200000000000000000000100100000000000200000000001010000000100000100010000140000021023020022010002000100502020021055201211310030101000011140
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................22187.0087000000000000000000000100000000000000000010001100001100000000000000000000000000000100001100000000000000000000000000000100000000000000000000000100000000000100000000000020000010000000000000301000030000000000000000000060010001000000000000000000000000010000100011000000000191819060010000000000000202000021102000000000000101001110110
droSim2
T------CG-------------TTCAC-----------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTTC-----------CAAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGATAT--------------CATCGGTTT--------TT---------------------------------------------------GCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................211314505.00314505114761552183293454365471670017153248162349917784137221362719103848
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................20126806.00268065200311284119237184177412053022669157223024112010
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................2218648.0086488634711067700873753251218213051798176000
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................2216254.00625424681725471320025628033737123120801359001
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................2114637.0046373773956763400772235510000
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................2113427.0034275543873234002593177515891038537000
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................1912416.0024163222015381382193112943552543291003000
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................2112226.0022261286477924001114121344201000
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................2011117.0011177683231310000111000000
..................................................................................................................................ACCACATGATTCGGCTT.....................................................................................................171930.00930000000621421887000000
..............................................................................................................................TAGCACCACATGATTCGGCTTAA...................................................................................................231883.0088330138928004825155143383158000
..............................................................................................................................TAGCACCACATGATTCGGCTTAAA..................................................................................................241444.0044420912600342513010524322000
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................181417.0041700035210852304425101101000
....................................................................GCCCGAATTATGTGGGAGCTGC..............................................................................................................................................................221394.0039430200200003374901000
..............................................................................................................................TAGCACCACATGATTCGGCTTC....................................................................................................221385.0038599548141019366149371312000
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................201307.00307901621910459527012009
..............................................................................................................................TAGCACCACATGATTCGGCG......................................................................................................201306.003061641512310000003000000
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................231281.0028159985006476401172000
....................................................................GCCCGAATTATGTGGGAGCTG...............................................................................................................................................................211263.002638122010000248001000
....................................................................GCCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................231218.002180007001301015523162100
..............................................................................................................................TAGCACCACATGATTCGGCTAAA...................................................................................................231182.00182006300383263382000000
................................................................................................................................GCACCACATGATTCGGCTT.....................................................................................................191178.001784182002874141010000
.....................................................................CCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................221154.00154200900380130974729000
.................................................................................................................................CACCACATGATTCGGCTT.....................................................................................................181151.0015139652100121247000000
..............................................................................................................................TAGCACCACATGATTCGGCTTTA...................................................................................................231133.0013344720200459850524000
..............................................................................................................................TAGCACCACATGATTCG.........................................................................................................171125.001250000000100124000000
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................221118.00118855920033215102000
...................................................................................................................................CCACATGATTCGGCTT.....................................................................................................161114.00114000000111121179000000
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................201102.00102414100131644134110000
..............................................................................................................................TAGCACCACATGATTCGGCTTAT...................................................................................................23198.0098703400108231230226000
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................22173.007320192005415165113000
.....................................................................CCCGAATTATGTGGGAGCTGCGT----........................................................................................................................................................23160.0060000000101200253100
..................................................................................................................................ACCACATGATTCGGCTTT....................................................................................................18157.00572648000000019000000
..............................................................................................................................TAGCACCACATGATTCGGCTTCG...................................................................................................23155.005511090131710120010000
..............................................................................................................................TAGCACCACATGATTCGGCTGT....................................................................................................22150.0050422200000003001000
..............................................................................................................................TAGCACCACATGATT...........................................................................................................15149.0049000000010147000000
..............................................................................................................................TAGCACCACATGATTCGGCTTCA...................................................................................................23147.00470000008617132100000
.............................................................................................................................GTAGCACCACATGATTCGGCTT.....................................................................................................22145.00451011440031713010000
..................................................................................................................................ACCACATGATTCGGCT......................................................................................................16143.0043000000003040000000
..............................................................................................................................TAGCACCACATGATTCGGCTGG....................................................................................................22138.0038350200000000100000
..................................................................................................................................ACCACATGATTCGGCTTA....................................................................................................18137.00376017000001013000000
..............................................................................................................................TAGCACCACATGATTCGGCGG.....................................................................................................21134.0034291400000000000000
....................................................................GCCCGAATTATGTGGGAGCTGCGA----........................................................................................................................................................24132.0032000200110928000000
....................................................................................................................................CACATGATTCGGCTT.....................................................................................................15132.0032000000315320000000
..............................................................................................................................TAGCACCACATGATTC..........................................................................................................16131.0031000000000031000000
....................................................................GCCCGAATTATGTGGGAGCT................................................................................................................................................................20128.0028000010105120000000
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................22126.0026100000305600011000
..............................................................................................................................TAGCACCACATGATTCGGCTTAC...................................................................................................23125.0025121620010110010000
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................19121.0021100110001403001000
..............................................................................................................................TAGCACCACATGATTCGGCTGA....................................................................................................22121.0021170000000003001000
..............................................................................................................................TAGCACCACATGATTCGGCTTTAA..................................................................................................24120.002000820010201042000
....................................................................GCCCGAATTATGTGGGAGC.................................................................................................................................................................19119.0019000054000010000000
..............................................................................................................................TAGCACCACATGATTCGGCTTCT...................................................................................................23119.001921800000132002000
.....................................................................CCCGAATTATGTGGGAGCTGCGT----A.......................................................................................................................................................24118.0018000000000000018000
..............................................................................................................................TAGCACCACATGATTCGGCAA.....................................................................................................21113.001300220001131003000
........................................................................GAATTATGTGGGAGCTGC..............................................................................................................................................................18112.0012000000000012000000
.....................................................................CCCGAATTATGTGGGAGCTGCGC----........................................................................................................................................................23112.001200000050202012000
..............................................................................................................................TAGCACCACATGATTCGGCCG.....................................................................................................21111.001170300000001000000
..............................................................................................................................TAGCACCACATGATTCGGCCC.....................................................................................................21111.001180300000000000000
....................................................................GCCCGAATTATGTGGGAGCTGCA.............................................................................................................................................................2319.00900010000103022000
....................................................................GCCCGAATTATGTGGGA...................................................................................................................................................................1719.00900000000009000000
....................................................................GCCCGAATTATGTGGGAGCTGCGT----T.......................................................................................................................................................2519.00900000000001008000
.............................................................................................................................GTAGCACCACATGATTCGGCT......................................................................................................2119.00920100011012100000
..............................................................................................................................TAGCACCACATGATTCGGCTTGA...................................................................................................2319.00990000000000000000
.....................................................................CCCGAATTATGTGGGAGCTGCGT----T.......................................................................................................................................................2418.00800000000000008000
..............................................................................................................................TAGCACCACATGATTCGGAC......................................................................................................2018.00840300000001000000
....................................................................GCCCGAATTATGTGGGAGCTGCGT----A.......................................................................................................................................................2517.00700000000001006000
..............................................................................................................................TAGCACCACATGATTCGGCTTTC...................................................................................................2317.00720100000111001000
.....................................................................CCCGAATTATGTGGGAGCTGCGA----........................................................................................................................................................2317.00700000000200014000
..................................................................................................................................ACCACATGATTCGGC.......................................................................................................1516.00600000000015000000
...................................................................................................................................CCACATGATTCGGCTTA....................................................................................................1716.00600000001212000000
..............................................................................................................................TAGCACCACATGATTCGGCTCA....................................................................................................2216.00600100030110000000
..............................................................................................................................TAGCACCACATGATTCGGCTGTA...................................................................................................2316.00660000000000000000
..............................................................................................................................TAGCACCACATGATTCGGA.......................................................................................................1916.00620000011100010000
..............................................................................................................................TAGCACCACATGATTCGGCTTGT...................................................................................................2316.00660000000000000000
................................................................................................................................GCACCACATGATTCGGCTTA....................................................................................................2016.00600000000006000000
.....................................................................CCCGAATTATGTGGGAGCTTTT.............................................................................................................................................................2216.00600000000000006000
................................................................................................................................GCACCACATGATTCGGCTTT....................................................................................................2015.00500000000005000000
...............................................................................................................................AGCACCACATGATTCGGCTTT....................................................................................................2115.00500030000001001000
.....................................................................CCCGAATTATGTGGGAGCTG...............................................................................................................................................................2015.00510120100000000000
.....................................................................CCCGAATTATGTGGGAGCTGTT.............................................................................................................................................................2215.00500000000000005000
...............................................................................................................................AGCACCACATGATTCGGCTTA....................................................................................................2115.00500020010101000000
....................................................................GCCCGAATTATGTGGGAGCTGCGT----........................................................................................................................................................2415.00500000000003002000
........................................................................GAATTATGTGGGAGCTG...............................................................................................................................................................1715.00500000000005000000
.....................................................................CCCGAATTATGTGGGAGC.................................................................................................................................................................1815.00510001100002000000
.....................................................................CCCGAATTATGTGGGAGCTGC..............................................................................................................................................................2115.00500000010001300000
...............................................................................................................................AGCACCACATGATTCGGC.......................................................................................................1815.00520010200000000000
...................................................................................................................................CCACATGATTCGGCT......................................................................................................1515.00500000001022000000
..............................................................................................................................TAGCACCACATGATTCGGCTTATA..................................................................................................2414.00410000000120000000
....................................................................GCCCGAATTATGTGGGAG..................................................................................................................................................................1814.00400002000002000000
..............................................................................................................................TAGCACCACATGATTCGGCTTTTA..................................................................................................2414.00401000000000003000
..............................................................................................................................TAGCACCACATGATTCGGCGA.....................................................................................................2114.00410000000003000000
...............................................................................................................................AGCACCACATGATTCGGCTTCG...................................................................................................2214.00400400000000000000
...................................................................................................................................CCACATGATTCGGCTA.....................................................................................................1614.00400000001102000000
..................................................................................................................................ACCACATGATTCGGCTC.....................................................................................................1714.00400000000004000000
....................................................................GCCCGAATTATGTGGGAGCTGT..............................................................................................................................................................2214.00400000000003100000
........................................................................GAATTATGTGGGAGCTGCG.............................................................................................................................................................1914.00400000000004000000
....................................................................GCCCGAATTATGTGGGAGCTGCAA----A.......................................................................................................................................................2513.00300010000002000000
..............................................................................................................................TAGCACCACATGATTCGGG.......................................................................................................1913.00310200000000000000
.............................................................................................................................GTAGCACCACATGATTCGGCTTT....................................................................................................2313.00310100000000001000
....................................................................GCCCGAATTATGTGGGAGCTGCAA----........................................................................................................................................................2413.00300030000000000000
..............................................................................................................................TAGCACCACATGATTCGGCTGTT...................................................................................................2313.00330000000000000000
...............................................................................................................................AGCACCACATGATTCGGCTA.....................................................................................................2013.00300120000000000000
droSec2
T------CG-------------TTCAC-----------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTTC-----------CGAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGATAT--------------CATCGGTTT--------TT---------------------------------------------------GCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................21127694.002769415599117372963626
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................2011789.001789610115531533
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................221840.0084042766170177
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................201715.00715708061
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................221287.0028715997346
....................................................................GCCCGAATTATGTGGGAGCTGC..............................................................................................................................................................221177.001771057884
....................................................................GCCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................231166.0016643119319
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................211113.00113106322
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................211107.001075752223
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................19183.00833221831
..............................................................................................................................TAGCACCACATGATTCGGCTTAA...................................................................................................23169.0069400281
.....................................................................CCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................22153.0053153305
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................21150.0050152258
..............................................................................................................................TAGCACCACATGATTCGGCTTC....................................................................................................22139.0039185106
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................23137.0037177211
....................................................................GCCCGAATTATGTGGGAGCTG...............................................................................................................................................................21127.002781711
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................22127.002720007
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................19125.002525000
...............................................................................................................................AGCACCACATGATTCGGCTTT....................................................................................................21123.002322010
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................18122.00228077
..............................................................................................................................TAGCACCACATGATTCGGCTTAAA..................................................................................................24121.002114061
.....................................................................CCCGAATTATGTGGGAGCTGC..............................................................................................................................................................21121.00213576
..............................................................................................................................TAGCACCACATGATTCGGCTTCG...................................................................................................23115.00151167
.............................................................................................................................GTAGCACCACATGATTCGGCTT.....................................................................................................22115.001514001
..............................................................................................................................TAGCACCACATGATTCGGCTTTA...................................................................................................23115.001510113
................................................................................................................................GCACCACATGATTCGGCTT.....................................................................................................19114.00149050
...............................................................................................................................AGCACCACATGATTCGGCTTA....................................................................................................21113.001313000
..............................................................................................................................TAGCACCACATGATTCGGCTTAT...................................................................................................23113.00136034
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................20111.00113152
.....................................................................CCCGAATTATGTGGGAGCTGCGT----........................................................................................................................................................23110.00104321
....................................................................GCCCGAATTATGTGGGAGCTGCGT----........................................................................................................................................................24110.00102224
.....................................................................CCCGAATTATGTGGGAGCTGCGC----........................................................................................................................................................2318.0082051
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................2218.0085030
.....................................................................CCCGAATTATGTGGGAGCTGCGC----C.......................................................................................................................................................2418.0080053
..............................................................................................................................TAGCACCACATGATTCGGCTTCT...................................................................................................2315.0053110
.................................................................................................................................CACCACATGATTCGGCTT.....................................................................................................1815.0053011
....................................................................GCCCGAATTATGTGGGAGCTGCA.............................................................................................................................................................2315.0050041
..............................................................................................................................TAGCACCACATGATTCGGT.......................................................................................................1914.0042002
..............................................................................................................................TAGCACCACATGATTCGGCTTCA...................................................................................................2314.0041030
..............................................................................................................................TAGCACCACATGATTCGGCTAAA...................................................................................................2314.0041120
..............................................................................................................................TAGCACCACATGATTCGGCTTTAA..................................................................................................2414.0043001
..............................................................................................................................TAGCACCACATGATTCGGCTGT....................................................................................................2214.0044000
..............................................................................................................................TAGCACCACATGATTCGGCTTTTA..................................................................................................2413.0031200
..................................................................CAGCCCGAATTATGTGGGAGCTGC..............................................................................................................................................................2413.0030021
..............................................................................................................................TAGCACCACATGATTCGGA.......................................................................................................1913.0032100
....................................................................GCCCGAATTATGTGGGAGCTGCGA----........................................................................................................................................................2413.0030210
..............................................................................................................................TAGCACCACATGATTCGGCTTAC...................................................................................................2313.0033000
.............................................................................................................................GTAGCACCACATGATTCG.........................................................................................................1812.0020020
.....................................................................CCCGAATTATGTGGGAGCTGCGA----........................................................................................................................................................2312.0021001
...............................................................................................................................AGCACCACATGATTCGGCTTG....................................................................................................2112.0022000
..............................................................................................................................TAGCACCACATGATTCGGCAA.....................................................................................................2112.0020020
...............................................................................................................................AGCACCACATGATTCGGCTTAA...................................................................................................2212.0022000
..............................................................................................................................TAGCACCACATGATTCGGCTTTC...................................................................................................2312.0021001
....................................................................GCCCGAATTATGTGGGAGCTGCAA----........................................................................................................................................................2412.0021010
.............................................................................................................................GTAGCACCACATGATTCGGCTTT....................................................................................................2312.0022000
...............................................................................................................................AGCACCACATGATTCGGCTA.....................................................................................................2012.0022000
.....................................................................CCCGAATTATGTGGGAGCTGCGC----CG......................................................................................................................................................2512.0021010
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................2012.0021001
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................2212.0021100
.............................................................................................................................GTAGCACCACATGATTCGGCT......................................................................................................2112.0021010
..............................................................................................................................TAGCACCACATGATTCGGCTTATA..................................................................................................2411.0010010
.....................................................................CCCGAATTATGTGGGAGCTG...............................................................................................................................................................2011.0011000
..............................................................................................................................TAGCACCACATGATTCGGCTGA....................................................................................................2211.0011000
....................................................................GCCCGAATTATGTGGGAGCTGCGT----T.......................................................................................................................................................2511.0010010
.....................................................................CCCGAATTATGTGGGAGCTGCGT----TT......................................................................................................................................................2511.0010001
..............................................................................................................................TAGCACCACATGATTCGGAA......................................................................................................2011.0010100
..................................................................CAGCCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................2511.0010010
..........................................................................................................................TCCGTAGCACCACATGATTCGGCTT.....................................................................................................2511.0011000
..............................................................................................................................TAGCACCACATGATTCGGCTATT...................................................................................................2311.0010001
.....................................................................CCCGAATTATGTGGGAGCTGCGG----........................................................................................................................................................2311.0010001
..............................................................................................................................TAGCACCACATGATTCGGCTTGT...................................................................................................2311.0010001
....................................................................GCCCGAATTATGTGGGAGCT................................................................................................................................................................2011.0011000
....................................................................................................................AG----TCCGTAGCACCACATGATTCG.........................................................................................................2311.0010010
..............................................................................................................................TAGCACCACATGATTCGTT.......................................................................................................1911.0010001
..............................................................................................................................TAGCACCACATGATTCGGAGA.....................................................................................................2111.0010100
...............................................................................................................................AGCACCACATGATTCGGCTC.....................................................................................................2011.0011000
..............................................................................................................................TAGCACCACATGATTCGGCG......................................................................................................2011.0011000
..................................................................................................................GAAG----TCCGTAGCACCACATGATT...........................................................................................................2311.0011000
...............................................................................................................................AGCACCACATGATTCGGCTTCT...................................................................................................2211.0011000
..............................................................................................................................TAGCACCACATGATTCGGCCC.....................................................................................................2111.0010010
....................................................................GCCCGAATTATGTGGGAGCTGTT.............................................................................................................................................................2311.0011000
..................................................................CAGCCCGAATTATGTGGGAGCTG...............................................................................................................................................................2311.0010010
droYak3
TTGCCATCCTGGATTAAACTCATTCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTTC-----------TAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAT--------------CAGCAATTT--------TTGGTAGCCAATCG------TTATCTACA---------------------ATTACSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................211150883.001508832180516107107850166810971559521361819131
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................2117681.0076812837737554700000
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................2015921.005921696585420316491115601060
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................2213830.0038305547152376364583142050
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................2211207.001207981818931441070000
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................2011099.001099120197701000000
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................2011006.00100639039710001010
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................211555.00555235131611578800000
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................211488.004886064345123400000
....................................................................GCCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................231475.004750393744421240000
..............................................................................................................................TAGCACCACATGATTCGGCTTC....................................................................................................221444.004443233362321020000
....................................................................GCCCGAATTATGTGGGAGCTGC..............................................................................................................................................................221265.00265020193338920000
..............................................................................................................................TAGCACCACATGATTCGGCTTAA...................................................................................................231243.0024315318340110000
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................191190.00190452210971311010
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................231108.0010817236102110120
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................22181.008123232810510000
..............................................................................................................................TAGCACCACATGATTCGGCTTAAA..................................................................................................24176.00761254910000000
..............................................................................................................................TAGCACCACATGATTCGGCTTTA...................................................................................................23165.006513143600110000
....................................................................GCCCGAATTATGTGGGAGCTG...............................................................................................................................................................21163.00631124313210000
.....................................................................CCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................22158.00580242440400020
...............................................................................................................................AGCACCACATGATTCGGCTTT....................................................................................................21151.0051146400000000
................................................................................................................................GCACCACATGATTCGGCTT.....................................................................................................19148.00480351102000000
.............................................................................................................................GTAGCACCACATGATTCGGCTT.....................................................................................................22147.00471271900000000
..............................................................................................................................TAGCACCACATGATTCGGCTTAT...................................................................................................23142.00422241410010000
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................19138.0038034400000000
.....................................................................CCCGAATTATGTGGGAGCTGCGC----........................................................................................................................................................23135.0035032730010010
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................22123.0023171500000000
.................................................................................................................................CACCACATGATTCGGCTT.....................................................................................................18123.00231121000000000
..............................................................................................................................TAGCACCACATGATTCGGCCC.....................................................................................................21121.0021401700000000
.....................................................................CCCGAATTATGTGGGAGCTGC..............................................................................................................................................................21120.0020021220130000
..............................................................................................................................TAGCACCACATGATTCGGCTGT....................................................................................................22120.0020303041000000
..............................................................................................................................TAGCACCACATGATTCGGCTTTAA..................................................................................................24118.001819800000000
...............................................................................................................................AGCACCACATGATTCGGCTTA....................................................................................................21115.0015013200000000
.............................................................................................................................GTAGCACCACATGATTCGGCT......................................................................................................21114.0014101020100000
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................20114.0014021200000000
..............................................................................................................................TAGCACCACATGATTCGGCTGG....................................................................................................22113.001380002300000
..............................................................................................................................TAGCACCACATGATTCGGCTAAA...................................................................................................23112.0012021000000000
..............................................................................................................................TAGCACCACATGATTCGGCG......................................................................................................20211.0022201100000000
..............................................................................................................................TAGCACCACATGATTCGGCTTAC...................................................................................................23110.001003700000000
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................18110.001005121010000
..............................................................................................................................TAGCACCACATGATTCGGCTTCT...................................................................................................2319.00913500000000
..............................................................................................................................TAGCACCACATGATTCGGAC......................................................................................................2018.00810700000000
..............................................................................................................................TAGCACCACATGATTC..........................................................................................................1618.00800000001070
....................................................................GCCCGAATTATGTGGGAGC.................................................................................................................................................................1918.00800800000000
....................................................................GCCCGAATTATGTGGGAGCTGCT.............................................................................................................................................................2318.00800600020000
...............................................................................................................................AGCACCACATGATTCGGCTC.....................................................................................................2017.00700700000000
....................................................................GCCCGAATTATGTGGGAGCTGCGT----........................................................................................................................................................2416.00602200200000
..............................................................................................................................TAGCACCACATGATTCGGCAA.....................................................................................................2116.00612201000000
..............................................................................................................................TAGCACCACATGATTCGGCTTCG...................................................................................................2316.00631000200000
..............................................................................................................................TAGCACCACATGATTCGGCTTTC...................................................................................................2316.00602300100000
..............................................................................................................................TAGCACCACATGATTCGGCAC.....................................................................................................2115.00501400000000
.....................................................................CCCGAATTATGTGGGAGCTG...............................................................................................................................................................2015.00502300000000
....................................................................GCCCGAATTATGTGGGAGCTGCC.............................................................................................................................................................2315.00500500000000
....................................................................GCCCGAATTATGTGGGAGCTGCA.............................................................................................................................................................2315.00500410000000
....................................................................GCCCGAATTATGTGGGAGCTGCGA----........................................................................................................................................................2414.00401120000000
...............................................................................................................................AGCACCACATGATTCGGCTTAA...................................................................................................2214.00404000000000
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................2214.00421000100000
droEre2
T------TCCTGACGAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----TGTTTT-----------CAGGA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAT--------------CAGCGGTTT--------TT------------------------------------------------GCTAGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................................................................TAGCACCACATGATTCGGCTT.....................................................................................................21144981.004498128559831610005261996455628
..............................................................................................................................TAGCACCACATGATTCGGCT......................................................................................................2012879.002879132533891572837850
..............................................................................................................................TAGCACCACATGATTCGGCTTT....................................................................................................2211529.0015291128954912791660
...............................................................................................................................AGCACCACATGATTCGGCTT.....................................................................................................2011301.00130112781210190
..............................................................................................................................TAGCACCACATGATTCGGCTTA....................................................................................................221580.005804404710234470
..............................................................................................................................TAGCACCACATGATTCGGCTG.....................................................................................................211538.005382221745132140
..............................................................................................................................TAGCACCACATGATTCGGCTC.....................................................................................................211481.004811245942220
....................................................................GCCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................231177.001774721121220650
....................................................................GCCCGAATTATGTGGGAGCTGC..............................................................................................................................................................221176.001761415910211070
..............................................................................................................................TAGCACCACATGATTCGGCTTAA...................................................................................................231170.001701531101230
..............................................................................................................................TAGCACCACATGATTCGGCTA.....................................................................................................211150.0015011619203100
..............................................................................................................................TAGCACCACATGATTCGGCTTC....................................................................................................221122.001227019768120
..............................................................................................................................TAGCACCACATGATTCGGC.......................................................................................................191121.001215711406430
..............................................................................................................................TAGCACCACATGATTCGGCTTG....................................................................................................221112.00112723402310
..............................................................................................................................TAGCACCACATGATTCGGCTTAAA..................................................................................................241108.00108103400010
..............................................................................................................................TAGCACCACATGATTCGGCTTTT...................................................................................................23176.007660331450
...............................................................................................................................AGCACCACATGATTCGGCT......................................................................................................19166.006664100010
....................................................................GCCCGAATTATGTGGGAGCTG...............................................................................................................................................................21164.006443211890
..............................................................................................................................TAGCACCACATGATTCGGCC......................................................................................................20159.005905700110
...............................................................................................................................AGCACCACATGATTCGGCTTT....................................................................................................21158.005857010000
................................................................................................................................GCACCACATGATTCGGCTT.....................................................................................................19156.005648401210
..............................................................................................................................TAGCACCACATGATTCGGCTTAT...................................................................................................23147.004743010120
.....................................................................CCCGAATTATGTGGGAGCTGCG.............................................................................................................................................................22140.0040151318120
..............................................................................................................................TAGCACCACATGATTCGG........................................................................................................18138.003870202270
.............................................................................................................................GTAGCACCACATGATTCGGCTT.....................................................................................................22132.003232000000
....................................................................GCCCGAATTATGTGGGAGCTGCGT----........................................................................................................................................................24126.00266010739
..............................................................................................................................TAGCACCACATGATTCGGCTTTA...................................................................................................23123.002316300310
...............................................................................................................................AGCACCACATGATTCGGCTTA....................................................................................................21116.001616000000
..............................................................................................................................TAGCACCACATGATTCGGCTGT....................................................................................................22112.001210110000
.....................................................................CCCGAATTATGTGGGAGCTGC..............................................................................................................................................................21112.00121101360
..............................................................................................................................TAGCACCACATGATTCGGCTAA....................................................................................................22110.001010000000
..............................................................................................................................TAGCACCACATGATTCGGCTTTAA..................................................................................................2419.0099000000
..............................................................................................................................TAGCACCACATGATTCGGCTTGT...................................................................................................2319.0098000100
..............................................................................................................................TAGCACCACATGATTCGGCTTCT...................................................................................................2319.0096001110
.................................................................................................................................CACCACATGATTCGGCTT.....................................................................................................1817.0076000010
..............................................................................................................................TAGCACCACATGATTCGGCTTCA...................................................................................................2317.0074000120
..............................................................................................................................TAGCACCACATGATTCGGCTTTC...................................................................................................2316.0066000000
..............................................................................................................................TAGCACCACATGATTCGGCTAT....................................................................................................2216.0066000000
...............................................................................................................................AGCACCACATGATTCGGCTTAAA..................................................................................................2316.0066000000
.....................................................................CCCGAATTATGTGGGAGCTG...............................................................................................................................................................2015.0055000000
..............................................................................................................................TAGCACCACATGATTCGGCGG.....................................................................................................2115.0055000000
....................................................................GCCCGAATTATGTGGGAGCTGA..............................................................................................................................................................2214.0041100020
..............................................................................................................................TAGCACCACATGATTCGGCTTCG...................................................................................................2314.0040100030
..............................................................................................................................TAGCACCACATGATTCGGCTTAC...................................................................................................2314.0044000000
.....................................................................CCCGAATTATGTGGGAGCTGCGC----........................................................................................................................................................2314.0041300000
...............................................................................................................................AGCACCACATGATTCGGCTTAA...................................................................................................2214.0044000000
...............................................................................................................................AGCACCACATGATTCGGCTA.....................................................................................................2014.0044000000
..............................................................................................................................TAGCACCACATGATTCGGCA......................................................................................................2013.0031001100
..............................................................................................................................TAGCACCACATGATTCGGCTTCAA..................................................................................................2413.0033000000
..............................................................................................................................TAGCACCACATGATTCGGCTAAA...................................................................................................2313.0033000000
..............................................................................................................................TAGCACCACATGATTCGGCAA.....................................................................................................2113.0033000000
...............................................................................................................................AGCACCACATGATTCGGCTTTT...................................................................................................2213.0033000000
..............................................................................................................................TAGCACCACATGATTCGGCTTTAG..................................................................................................2413.0032000100
...............................................................................................................................AGCACCACATGATTCGGCTG.....................................................................................................2013.0033000000
...............................................................................................................................AGCACCACATGATTCGGCTTC....................................................................................................2112.0022000000
....................................................................GCCCGAATTATGTGGGAGCTGCT.............................................................................................................................................................2312.0020100100
..............................................................................................................................TAGCACCACATGATTCGGCTTGA...................................................................................................2312.0022000000
..............................................................................................................................TAGCACCACATGATTCGGCCC.....................................................................................................2112.0020101000
..............................................................................................................................TAGCACCACATGATTCGGCTGA....................................................................................................2212.0022000000
....................................................................GCCCGAATTATGTGGGAGCTGCGC----........................................................................................................................................................2412.0022000000
......................................................................CCGAATTATGTGGGAGCTGCG.............................................................................................................................................................2112.0022000000
..............................................................................................................................TAGCACCACATGATTCGCT.......................................................................................................1912.0020000020
...............................................................................................................................AGCACCACATGATTCGGCA......................................................................................................1912.0022000000
...........................................................................................................................................TTCGGCTTCGTGGTGCAGGAC........................................................................................2112.0020000200
...............................................................................................................................AGCACCACATGATTCGGC.......................................................................................................1812.0022000000
.............................................................................................................................GTAGCACCACATGATTCGGCTTT....................................................................................................2312.0022000000
..............................................................................................................................TAGCACCACATGATTCTT........................................................................................................1851.4075000020

Generated: 10/20/2015 at 07:01 PM