ID:

dmo_1087

 Coordinate:

scaffold_6496:11117449-11117718 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dmoj\GI19107-cds]; exon [dmoj_GLEANR_4041:2]; exon [dmoj_GLEANR_4041:1]; CDS [Dmoj\GI19107-cds]; intron [Dmoj\GI19107-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGAACTGGTCGGGCCTGGTTACGCTGTGCCTGGGCCAGGAGCGCGAGAAGGTACTCCGATTGATTTTGTGTGATTATTGCAGGGGCTCATAAAATACGGATACTTTATGTTTATTTAATAAGCGGTAATGTTTCCAACATGCTCCGAATCGAATCAAGTATCCAAAATTTGTGAAAGTCACGCATATGGGCTACGATAGCCGGCTGGCTGGTTGGGTGGTTGTTAGGTGGTTAAGTGGGAGTGGGTGTGAATCCACAGCGAGTATGGAACATCTAATGTAATACATTCTTTTTCGACACTTTCGTTTTGTCACCATGCAGCGGCAGGTGAGCAGCCAGCGCACATCCCTGACCAAGTCCAATGGGGCCGG
**************************************************................(((((((((...((....))(((((((....((((((((...((((..((......(((..(((((...)))))...)))))..)))).))))))))....))))))).))))))))).....(((((..(((((((....))))))).)))))(((..(((((..((((((((((((((((...((((.........))))))))).(((((...))))).........)))))))))))..)))))..))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 M060
embryo
 V049
head
 M046
female body
 V110
male body		 V041
embryo
.........................................................................................................................................................................................................................GGTGGCTAGATGGTTAAGTGGG................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................CGGCTGTCTGGTTCGGTGGT...................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
......................GCTGTGCCTGGGCCAGGAGCGC...................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................................................................AGTAAATATGGAACATCTAAT............................................................................................. 21 3 20 0.45 9 0 0 0 6 3 0
................................................................................................................................................................................................................TGGTAGGGTAGTTGATAGGTG............................................................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0
....................................................................................................................................................................................................TGGCCGGGGGGCTGGTTGGGTG........................................................................................................................................................ 22 3 10 0.30 3 0 0 3 0 0 0
............................................................................................................................................................................................................TGGCAGGGTGGGTGGTTGTT.................................................................................................................................................. 20 2 4 0.25 1 1 0 0 0 0 0
..........................................................................................................ATGTTTAGTTAAGTAGCGGT.................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 1 0
....................................................................................................................................................................................................TGGCCGGGGGGCTGGTTGGGT......................................................................................................................................................... 21 3 17 0.24 4 2 0 2 0 0 0
........................................................................................................................................................................................................CGGCAGGCTGGTTAGATGGTT..................................................................................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0
........................................................................................................................................................................................................CGGCAGGTTGGTTCGGTGGTT..................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0
........................................................................................................................................................................................................CGGCCGGGTGGATGGGTGGTTGT................................................................................................................................................... 23 3 7 0.14 1 1 0 0 0 0 0
.........................................................................................................................GCGGTAATGTTTCTAAAA....................................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0
..................................................................................................................................................................................................................................GTGGTTAAGGGGGGGTGGG............................................................................................................................. 19 2 8 0.13 1 0 0 0 0 1 0
.........................................................................................................................................................................................................................GGTGGCTAGATGGTTAAGT...................................................................................................................................... 19 3 18 0.11 2 0 0 0 0 2 0
.............................................................................................TTACGGATACTTTAGGTGTA................................................................................................................................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 1
....................................................................................................................................................................................................TGGCCGGGGGGCTGGTTGGG.......................................................................................................................................................... 20 3 20 0.10 2 1 0 1 0 0 0
....................................................................................................................................................................................................TGGCCGGGTGGCTGGTTGGGT......................................................................................................................................................... 21 2 11 0.09 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................................GTTAAGTGGAAGAGGATGTG......................................................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0
.............................................................................................................................................................................................................................GCTAGGTGGTTAAGTGGT................................................................................................................................... 18 2 14 0.07 1 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................AATATGGAACATCTAATA............................................................................................ 18 2 20 0.05 1 0 0 0 1 0 0
....................................................................................................................................................................................................TGGCCGGGTGGCTAGTTGGGT......................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TCTTGACCAGCCCGGACCAATGCGACACGGACCCGGTCCTCGCGCTCTTCCATGAGGCTAACTAAAACACACTAATAACGTCCCCGAGTATTTTATGCCTATGAAATACAAATAAATTATTCGCCATTACAAAGGTTGTACGAGGCTTAGCTTAGTTCATAGGTTTTAAACACTTTCAGTGCGTATACCCGATGCTATCGGCCGACCGACCAACCCACCAACAATCCACCAATTCACCCTCACCCACACTTAGGTGTCGCTCATACCTTGTAGATTACATTATGTAAGAAAAAGCTGTGAAAGCAAAACAGTGGTACGTCGCCGTCCACTCGTCGGTCGCGTGTAGGGACTGGTTCAGGTTACCCCGGCC
**************************************************................(((((((((...((....))(((((((....((((((((...((((..((......(((..(((((...)))))...)))))..)))).))))))))....))))))).))))))))).....(((((..(((((((....))))))).)))))(((..(((((..((((((((((((((((...((((.........))))))))).(((((...))))).........)))))))))))..)))))..))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V041
embryo
 V056
head
..............................................................................................................................................................................................................................................................................................................GCAAAACAGTGGTACGTCGCCGT............................................. 23 0 1 1.00 1 0 0 1 0
...................................................................................................................................................................................TGCGTATACCCGAAGCAAT............................................................................................................................................................................ 19 2 1 1.00 1 0 1 0 0
........................................................................................................................................................................................................................................................................................................................GGTACGTCGCCGTCCACTCGT..................................... 21 0 1 1.00 1 1 0 0 0
.............................................TCTCCCATGAGGATGACTAA................................................................................................................................................................................................................................................................................................................. 20 3 1 1.00 1 0 1 0 0
................................................................................................................................................................................................................................................................TCATTTATACCTTGTAGATTA............................................................................................. 21 3 20 0.95 19 16 3 0 0
............................................................................................................................................................................................................................................................................................................................................CCGGTTGCATGTAGGGACT................... 19 3 5 0.20 1 1 0 0 0
..........................................................................................................................................................................................................................................................................CTCGTAGAGTACTTTATGTAA................................................................................... 21 3 5 0.20 1 0 0 0 1
.........................................................................................................................CGCCATTACAAAGATTTT....................................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0
..............................................CGTCCATGAAGCTCACTAA................................................................................................................................................................................................................................................................................................................. 19 3 18 0.06 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:11117399-11117768 - dmo_1087 AGAACTGGTCGGGCCTGGTTACGCTGTGCCTGGGCCAGGAGCGCGAGAAGGTAC-------TCCGATTGATTTTGTGTGATTAT---TGCAGGGGCTCATA------AAA--TA-------CGGATACTTTATGTTTATTTAATAAGCGG----TAATGTTTCCA--ACATGCTCCGAAT----------C-------GAATCA-AGTATCC-AAAATTTGTGAAAGTCACGCA-TATGGGCTACGATAGC-----------CGGCTG----GC---T-----------------GGTTGGGT--------GGTT----GTTAGGTGGTTAAGT---------GGGAGTGGGTGTGAATCCA----------------------------------CAGCGAGTATGGAACATCTAATGT-------AATACATTCT--TTTTCGACACTTTCGTTTTG-TCACCATGCAGCGGCAGGT-------GAGCAGCCAGCGCACATCCCTGACCAAGTCCAATGGGGCC------------GG-
droVir3 scaffold_12875:16885415-16885745 + AAAACTGGTCGGGCTTGGTAACGCTTTGTCTGGGCCAGGAACGCGAGAAGGTAC-------TTCGATTGATTTT--GTGCTTACT---T------------------GGTTCGCACGACAAT---------ATGTGCGCCTAATGAACGG----GAATGCTTC-------------GAGCATGGGTAGAAT-----------------TACA-AAAATTTGTCCAAGTCACGCA-TATGGGC---GATAGC-----------TGGGCGAGGGGCGGATGGTGCCAG----------AGCGAATC-----------------------------------------------CCCTGGAG-------------------T----TAGTGCCAG------------------TTAGTCGCATGTAATGTAATAGATTCT--GTTTCGACACTTTCGTTTTG-TCACCATGCAGAGGCAGAC-------GAGCAGCCAGCGCACATCCCTGACCAAGTGCAATGTGGCC------------GC-
droGri2 scaffold_15245:5679486-5679855 + GGAATTGGTCGGGTCTAGTGACGCTCTGTTTGGGCCAGGAACGCGAGAAGGTA----------CGATTGATTTT--GTGATTACATTGG-----GCCAATAAAAAAACA------------TGGATACTTTATGTGGGTTTAATAAACGG------ATACTTGTTTTCCGCTATCCGAACATGGGTGGAAA-----------------GTAA-CGAATTTGTCAAAGTCACGCA-TATGATT---G-TTGCTGGGCTGCCA-GA---------------------------------TGGGGTCGAGG--------------GCGGGTTG-------------GGGGA--GCTGTGGAG-------------------C----ATGTGGCATTTAGCATG-----TAGC--ATGTAGCATGTATTATAATCCATTTT--GTTTCGACACTTTCGTTTTG-TCACCATGCAGAGGCAGAT-------AAGCAGCCAGCGCGATTCCCTGACCAAGTGTGC---CAG------TGTGGTCGC-
droWil2 scf2_1100000004382:1022396-1022721 - AAAATTGGTCGGGCCTGGTTACTCTATGCTTGGGCCAGGAGCGTGAGAAGGTACATAAATACACGATTGATTTTTAGTCATTACGATAA------------------CA------------TGGATATTTGATGTGATTTTAATGAATTGA---TGATGCTTCTA--AC-----------------------------------------------ATTTAGACAAGTCACGCA-TA-G-TC-----ATTCGGCGCTGGTT-TT---------------------------------TGGGGT--------TGTG----GTTGGTGGGTT-------------GGG-AGGATTATTCTTCTA--------------------CCTC---TTCT------------TGGCCTAAT----GTT-----TAACATATTAC--GTTTT--------GATTTCTTCCATCATGCAGAAGCAGTC-------AACCAGCCAGCGGGCATCTCTAAGTAAATCCACAATGGGCGG---GGTGACCAG-
dp5 3:5484794-5485137 - dps_1032 AGAACTGGTCGGGTTTGGTTACCCTGTGTCTGGGCCAGGAGCGTGAGAAGGTA--------CACGATTGATTTT--GCCATCATGATTC------------------CA------------TGGGTATTTGATGTCTTTTTAATGGATTG------ATGCTTGTT--ACGAAATGTGAACATGGG---AAT-------GCATTT-GCTGCCC-AAAATTTGACACAGTCACGCA-TATT--------CCGGGT---------------------------------------------TGGGTTTAGGGATTGGGAT--------GTGTT-------------GTGCAGTGCCGTGGATCTGGTTTTGGGTTTGGGGACATGTCTA-------------------ATCCAGAACTAACATG--------TT----------GTT-------TCGTTCCG-CCACCATGCAGAGAGGGAC-------TGGCAGCCAGCGCACATCTCTGACTAAGTCTGG---GGG------GGTGACCAG-
droPer2 scaffold_2:5684312-5684677 - AGAACTGGTCGGGTCTGGTTACCCTGTGTCTGGGCCAGGAGCGTGAGAAGGTA--------CACGATTGATTTT--GCCATCATGATTC------------------CA------------TGGGTATTTGATGTCTTTTTAATGGATTG------ATGCTTGTT--ACGAAATGTGAACATGGG---AAT-------GCATTT-GCTGCCC-GAAATTTGACACTGTCACGCA-TA---TC-----CCGGCC-------A-G---------GC---A--------TCAGTTTTGGGTTGGGTTTAGGGATTGGGATGTGTT---GTGTT-------------GTGCAGTGCCGTGGATCTGGTTTTGGGTTTGGGGACATGTCTA-------------------ATCCAGAACTAACGTG--------TT----------GTT-------TCGTTCCG-CCACCATGCAGAGAGGGAC-------TGGCAGCCAGCGCACATCTCTGACTAAGTCTGG---GGG------GGTGACCAG-
droAna3 scaffold_13266:16178853-16179178 - AGAACTGGTCGGGTCTGGTGACTCTCTGTTTGGGTCAGGAGCGTGAGAAGGTA--------GCCGATTGATTTT--GCCATTACTGTTCCACCACCCCCCG--CC--C-A---C-------CTGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGAAATGTGAACAAGCG---GAT-------ATGTGT-CCTGTCCGGGAATTTAGCCAAGTCACGCGAC--C--------------GACCCCTA-T-----------------------------------------------------------GGGGATAG-------------TGGTATCC----------------------------GTGTCTC-------------------AGCCATTACTAACATG--------TCTATTTC--GTTTC-------ACGTTCCG-CGACTATGCAGAAG---GC-------AGGCAGCCAGCGTGGATCGTTGACCAAGTCCCATATTGGC------ATGGCTGG-
droBip1 scf7180000396567:659333-659653 - AGAACTGGTCGGGTCTGGTGACTCTCTGTTTGGGTCAGGAGCGTGAGAAGGTA--------GCCGATTGATTTT--GCCATTACGGCTC------------------CACCCCC-------AGGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACAAGCG---AAT-------ATGTGT-CCTGTCCGGAAATTTAGCCAAGTCACGCGAC--T-CC-----T------------A-AT----------------------------------------------------------GTGGGGAT--------------GGTATCC----------------------------TTGTCTG-------------------AGCCATTACTAACATG--------TCTATTTC--GTTTC-------ACGTTTCG-CCACTATGCAGAAGCAGTC-------AGGCAGCCAGCGTGGATCATTGACCAAGTCGCACATGGGCATGGCAGGGGCCGG-
droKik1 scf7180000302471:477084-477374 - AAAACTGGTCGGGCCTGGTGACTCTGTGCCTCGGCCAAGAGCGTGAGAAGGTA--------CCAGATTGATTTT--GACATTA-----------------------------------------ATGCTTGATGTCTTTTTAATGAATTG------ATGCATGTA--ACGAAATGTGAACATGGC---AAT-------GCATGCGCCTGTCTAGAAAATTGGCCAAGTCACGAA-CATC--------CC------------------------------------------------------------------------------------------------------------------------------------ATCCA-------------------TGCCCATACTAACAGC--------CACACTTGTGGTTTC---CTTTCCATTTCG-CCACCATGCAGAAGCAG-CAGCTGAGCAACAGCCAGCGCGGATCGCTGACCAAGTCGCATATAGGCGT------GG-CGG-
droFic1 scf7180000453215:355748-356059 + AGAACTGGTCGGGTCTGGTGAATCTTTGCCTGGGGCAGGAGCGTGAGAAGGTA--------TTCGATTGATTTT--GCCATTTTGGTTC------------------CAA-----------TGGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AAT-------GTATGG-TTGGTCT-GAAATTTGGCCAAGTCACGCCAT--C-CC-----TTGTGGGAACTCAG-T-----------------------------------------------------------GGGGGTAC-------------AGGGAGT-----------------------------GTGTCTA-------------------AGCCGAAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCACCATGCAGAAG---GC-------AGGCAGCCAGCGCGGATCGCTGACCAAGTCGCATATAGGC------------GT-
droEle1 scf7180000491258:183872-184211 + AGAACTGGTCGGGTCTGGTGAATCTCTACCTTGGGCAGGAGCGCGCAAAGGTA--------CACGATTGATTTT--GCCATTATGGTGG------------------CAA-----------TAGGTATTTGATATCTTTTTAATGAATTGATATTGATGCTTGTA--ACGGAATGTGAACACGAG---AATGGAATGTATGTGG-TTCGTCT-GAAAATTGGCCAAGTCACGCAA-ATAGTC-----TTGTGGGGATTCTAATC----------------------------------------------------------GGGGGTTT-TGAGGGTTTGATA--------------T--------------------ATATCTG-------------------CGGTTGAACTAACATG--------CATATTTG--GTTTC-------CCATTTCA-TCACCATGCAGAGGCCAGC-------GGGCAGCCAGCGCGGATCGCTGACCAAGTCACATTTGAGC------------GTT
droRho1 scf7180000774573:101290-101612 - AGAACTGGTCGGGTCTGGTGAATCTTTGCTTGGGGCAGGAGCGTGAAAAGGTA--------TACGATTGATTTT--GTCATTATGGTTC------------------CAA-----------TAGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAAAGTGAACACGAG---AAT-------GTATGG-TTTGTCT-GAAATTTTGCCAAGTCACGCGA-A---TC-----TCGTGGTGATTCTA-TGGGCGGGGGGCGT--------------------------------------------------TTAT-------------ATGTAGT-----------------------------GTGCCTG-------------------CGGCAGAACTAACATG--------CATGTTCG--GTTTC-------CCATTTCA-TCACCATGCAGAGGCCAGC-------GAGCAGCCAGCGCGGATCGCTGACCAAGTCGCACATTGGC------------GT-
droBia1 scf7180000302291:1696710-1697018 - AGAACTGGTCGGGTCTGGTGAATCTCTGCCTGGGGCAGGAGCGCGAGAAGGTA--------TACGATTGATTTT--GCCATTATGGTTA------------------CAA-----------TAGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AATG------GTATGG-ATTGTCT-GAAATTTGGCCAAGTCACGCCA-----TC-----TTGAGGGCGTTCTG-TG----------------------------------------------------------GGGG-ATA-------------A-----T-----------------------------GTGTCTA-------------------AGGCATTACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCGTCATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGTTCGCTGACCAAGTCCCACATAGGC------------GT-
droTak1 scf7180000415088:279127-279437 + AAAACTGGTCGGGTCTGGTGAATCTTTGCCTGGGGCAGGAGCGCGACAAGGTA--------TACGATTGATTTT--GCCATTATGCTTA------------------CAA-----------TAGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AAC-------GTATGG-ATTGCCG-AAAATTGATCCAAGTCACGCCAT--A-TC-----TTGGGGGAGTTCTA-TT----------------------------------------------------------GGGGGATA-------------T-----A-----------------------------GTGTCTA-------------------AGGTTTAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCATCATGCAGAGGCCAGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGC------------GT-
droEug1 scf7180000409474:2691866-2692174 - AGAACTGGTCGGGCCTGGTGAATCTTTGCCTGGGGCAGGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTATAGTTA------------------CAA-----------TAGGTATTTGATGTCATTTTAATGAATTG------ATGCTTGTA--ACGAAATGTGAACACGGG---AAT-------GTATAG-ATTGACT-GAAATTTGGC--AGTCACGCCAT--A-TC-----TTGTGGGGGTTCTA-TT----------------------------------------------------------GGGAAATT-------------T-----A-----------------------------GTGTCTT-------------------AGGTTTAACAACCATG--------CATGTTCG--GTTTC-------CCATTTCA-TCATCATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCGCATATAGGT------------GT-
dm3 chr2R:3854855-3855180 - AGAACTGGTCGGGGCTGGTGAATCTTTATCTGGGCCAGGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTATGGTTA------------------CAA-----------TGGGGTATTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AACC------ATACGG-TTCGTCT-AAAATTTGACGAAGTCACGCCAT--T-TC-----TTGTGGGGATTCTA-TT----------------------------------------------------------GGGGGTTT-------------GGGTATCTCTGTGCTTCTA--------------------GCTG-------------------TGGCCTAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGC------------GT-
droSim2 2r:4678369-4678694 - dsi_12637 AGAACTGGTCGGGACTGGTGAATCTTTGCCTGGGCCACGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTATGGTTA------------------CAA-----------TAGGGTATTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AACC------ACACGG-TTCGTCT-AAAATTTGGCCAAGTCACGCCAT--T-TC-----TTGTGGGGATTCTA-TT----------------------------------------------------------GGGGGTTT-------------GGGTATCGCTGTGGTTCTA--------------------ACTG-------------------TGGCCTAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGC------------GT-
droSec2 scaffold_1:1492169-1492485 - AGAACTGGTCGGGACTGGTGAATCTTTGCCTGGGCCACGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTATGGTTA------------------GAA-----------TAG---------GTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AACC------ACACGG-TTCGTCT-AAAATTTGGCAAAGTCACGCCAT--T-TC-----TTGTGGGGATTCAA-TG----------------------------------------------------------GGGGGTTT-------------GGGTATCGCTGTGGTTCTA--------------------ACTG-------------------TGGCCTAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGC------------GT-
droYak3 2L:16511168-16511484 - AGAACTGGTCGGGGCTAGTGAATCTTTACCTTGGCCAGGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTATGGTTA------------------CAA-----------TGGGATATTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AACC------ACACTG-TTTGTCG-AAAATTTGGCTAAGTCACGCCAT--A-TC-----TTGTGGGGATTCTA-TT----------------------------------------------------------GGGGGTAT-------------GGGCATC-----------------------------GTGGCTG-------------------TGGCCAAACTAACATG--------CATATTTG--GTTTC-------CCATTTCA-TCGACATGCAGAGGCCGGC-------GAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGC------------GT-
droEre2 scaffold_4929:18773152-18773457 + AGAACTGGTCGGGGCTGGTGAATCTTTGCCTGGGTCAGGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTAAGGTTA------------------CAA-----------TGGGATATTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACG--------------------G-TTCGTCT-AAAATTTGGCGAAGTCACGCCAT--A-TC-----TTGTGGGGATTCTA-TT----------------------------------------------------------GGGGGTAT-------------GGATATC-----------------------------GTGGCTG-------------------TGGCCTAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATCGGC------------GT-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGAACTGGTCGGGCCTGGTTACGCTGTGCCTGGGCCAGGAGCGCGAGAAGGTAC-------TCCGATTGATTTTGTGTGATTAT---TGCAGGGGCTCATA------AAA--TA-------CGGATACTTTATGTTTATTTAATAAGCGG----TAATGTTTCCA--ACATGCTCCGAAT----------C-------GAATCA-AGTATCC-AAAATTTGTGAAAGTCACGCA-TATGGGCTACGATAGC-----------CGGCTG----GC---T-----------------GGTTGGGT--------GGTT----GTTAGGTGGTTAAGT---------GGGAGTGGGTGTGAATCCA----------------------------------CAGCGAGTATGGAACATCTAATGT-------AATACATTCT--TTTTCGACACTTTCGTTTTG-TCACCATGCAGCGGCAGGT-------GAGCAGCCAGCGCACATCCCTGACCAAGTCCAATGGGGCC------------GG-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................GCTGTGCCTGGGCCAGGAGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droVir3
AAAACTGGTCGGGCTTGGTAACGCTTTGTCTGGGCCAGGAACGCGAGAAGGTAC-------TTCGATTGATTTT--GTGCTTACT---T------------------GGTTCGCACGACAAT---------ATGTGCGCCTAATGAACGG----GAATGCTTC-------------GAGCATGGGTAGAAT-----------------TACA-AAAATTTGTCCAAGTCACGCA-TATGGGC---GATAGC-----------TGGGCGAGGGGCGGATGGTGCCAG----------AGCGAATC-----------------------------------------------CCCTGGAG-------------------T----TAGTGCCAG------------------TTAGTCGCATGTAATGTAATAGATTCT--GTTTCGACACTTTCGTTTTG-TCACCATGCAGAGGCAGAC-------GAGCAGCCAGCGCACATCCCTGACCAAGTGCAATGTGGCC------------GC-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................CTAATGAACGG----GAATGCTTC-------------GAGC.........................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
................................................................................TTACT---T------------------GGTTCGCACGACAAT---------..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................TGCCAG----------AGCGAATC-----------------------------------------------CCCA..........................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
AAAACTGGTCGGGCTTGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
droGri2
GGAATTGGTCGGGTCTAGTGACGCTCTGTTTGGGCCAGGAACGCGAGAAGGTA----------CGATTGATTTT--GTGATTACATTGG-----GCCAATAAAAAAACA------------TGGATACTTTATGTGGGTTTAATAAACGG------ATACTTGTTTTCCGCTATCCGAACATGGGTGGAAA-----------------GTAA-CGAATTTGTCAAAGTCACGCA-TATGATT---G-TTGCTGGGCTGCCA-GA---------------------------------TGGGGTCGAGG--------------GCGGGTTG-------------GGGGA--GCTGTGGAG-------------------C----ATGTGGCATTTAGCATG-----TAGC--ATGTAGCATGTATTATAATCCATTTT--GTTTCGACACTTTCGTTTTG-TCACCATGCAGAGGCAGAT-------AAGCAGCCAGCGCGATTCCCTGACCAAGTGTGC---CAG------TGTGGTCGC-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAAATTGGTCGGGCCTGGTTACTCTATGCTTGGGCCAGGAGCGTGAGAAGGTACATAAATACACGATTGATTTTTAGTCATTACGATAA------------------CA------------TGGATATTTGATGTGATTTTAATGAATTGA---TGATGCTTCTA--AC-----------------------------------------------ATTTAGACAAGTCACGCA-TA-G-TC-----ATTCGGCGCTGGTT-TT---------------------------------TGGGGT--------TGTG----GTTGGTGGGTT-------------GGG-AGGATTATTCTTCTA--------------------CCTC---TTCT------------TGGCCTAAT----GTT-----TAACATATTAC--GTTTT--------GATTTCTTCCATCATGCAGAAGCAGTC-------AACCAGCCAGCGGGCATCTCTAAGTAAATCCACAATGGGCGG---GGTGACCAG-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................TTGGGCCAGGAGCGTGAGAAGGTACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
...........................................................................................................................................................................................................................................................................................................GGGT--------TGTG----GTTGGTGGGTT-------------G.....................................................................................................................................................................................................2011.00101000
.......................................................................................................................................................................................................................................................................T---------------------------------TGGGGT--------TGTG----GTTGGTGGGT....................................................................................................................................................................................................................2111.00100100
........................................................................................................................................................................................................................................................................................................................GTG----GTTGGTGGGTT-------------GGG-AGGA..............................................................................................................................................................................................2111.00100001
dp5
AGAACTGGTCGGGTTTGGTTACCCTGTGTCTGGGCCAGGAGCGTGAGAAGGTA--------CACGATTGATTTT--GCCATCATGATTC------------------CA------------TGGGTATTTGATGTCTTTTTAATGGATTG------ATGCTTGTT--ACGAAATGTGAACATGGG---AAT-------GCATTT-GCTGCCC-AAAATTTGACACAGTCACGCA-TATT--------CCGGGT---------------------------------------------TGGGTTTAGGGATTGGGAT--------GTGTT-------------GTGCAGTGCCGTGGATCTGGTTTTGGGTTTGGGGACATGTCTA-------------------ATCCAGAACTAACATG--------TT----------GTT-------TCGTTCCG-CCACCATGCAGAGAGGGAC-------TGGCAGCCAGCGCACATCTCTGACTAAGTCTGG---GGG------GGTGACCAG-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGCAGAGAGGGAC-------TGGCA..................................................2111.0010100000000
...............TGGTTACCCTGTGTCTGGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................GTGCAGTGCCGTGGATCTGGT.................................................................................................................................................................................2111.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................CCGTGGATCTGGTTTTGGGT..........................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................TTGGGAT--------GTGTT-------------GTGCAGTG..............................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACATG--------TT----------GTT-------TCGTTCCG-CC...............................................................................2011.0010100000000
.......................................................................................................................................................................ACGAAATGTGAACATGGG---AAT-------.......................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................GAT--------GTGTT-------------GTGCAGTGCCGTG.........................................................................................................................................................................................2111.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................TCTGGTTTTGGGTTTGGGG....................................................................................................................................................................1911.0010100000000
.........................GTGTCTGGGCCAGGAGCGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................TGTGTCTGGGCCAGGAGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................TGCAGTGCCGTGGATCTGG..................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................TT-------------GTGCAGTGCCGTGGATCTG...................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................TGTT-------------GTGCAGTGCCGTGGAT......................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................AT--------GTGTT-------------GTGCAGTGCCGTG.........................................................................................................................................................................................2011.0010100000000
.........................................................................T--GCCATCATGATTC------------------CA------------TGGG................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCG-CCACCATGCAGAGAG..................................................................2011.0010100000000
.............................CTGGGCCAGGAGCGTGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.............................................................................................................................................AATGGATTG------ATGCTTGTT--ACG...................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................TGGTTTTGGGTTTGGGGA...................................................................................................................................................................1811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAGAGGGAC-------TGGCAGC................................................2011.0010100000000
..........................................................................................................................................................................................................TT-GCTGCCC-AAAATTTGACAC............................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................ATCTGGTTTTGGGTTTGGGGA...................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGGAC-------TGGCAGCCAGC............................................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................T-------------GTGCAGTGCCGTGGATCT....................................................................................................................................................................................1911.0010100000000
..............................................................................................................................................................................................................CTGCCC-AAAATTTGACACAGT.........................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................TGCCGTGGATCTGGTTTTGGT...........................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................AAATGTGAACATGGG---AAT-------GC.....................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.......................................................................................................................................................................................................................................................................................................................TGGGAT--------GTGTT-------------GTGCAGTGCC............................................................................................................................................................................................2111.0010000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAC-------TGGCAGCCAGCGC..........................................1911.0010100000000
droPer2
AGAACTGGTCGGGTCTGGTTACCCTGTGTCTGGGCCAGGAGCGTGAGAAGGTA--------CACGATTGATTTT--GCCATCATGATTC------------------CA------------TGGGTATTTGATGTCTTTTTAATGGATTG------ATGCTTGTT--ACGAAATGTGAACATGGG---AAT-------GCATTT-GCTGCCC-GAAATTTGACACTGTCACGCA-TA---TC-----CCGGCC-------A-G---------GC---A--------TCAGTTTTGGGTTGGGTTTAGGGATTGGGATGTGTT---GTGTT-------------GTGCAGTGCCGTGGATCTGGTTTTGGGTTTGGGGACATGTCTA-------------------ATCCAGAACTAACGTG--------TT----------GTT-------TCGTTCCG-CCACCATGCAGAGAGGGAC-------TGGCAGCCAGCGCACATCTCTGACTAAGTCTGG---GGG------GGTGACCAG-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................GTGTCTGGGCCAGGAGCGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.....................................................................................................................................................................................................................................................................................................TGGGTTGGGTTTAGGGATTG....................................................................................................................................................................................................................................2011.001000001
..........................................................................................................................................................................................................................................................................................................TGGGTTTAGGGATTGGGATG...............................................................................................................................................................................................................................2011.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCGCACATCTCTGACTAAGTC.........................2511.001100000
......................................................................................................................................................................................................................................CGCA-TA---TC-----CCGGCC-------A-G---------GC---A--------T..............................................................................................................................................................................................................................................................2011.001000010
...............................................................................................................................................................................................................................................................................................................................GTT---GTGTT-------------GTGCAGTGCCGT..........................................................................................................................................................................................2011.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-CCACCATGCAGAGAGGG................................................................1911.001000100
droAna3
AGAACTGGTCGGGTCTGGTGACTCTCTGTTTGGGTCAGGAGCGTGAGAAGGTA--------GCCGATTGATTTT--GCCATTACTGTTCCACCACCCCCCG--CC--C-A---C-------CTGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGAAATGTGAACAAGCG---GAT-------ATGTGT-CCTGTCCGGGAATTTAGCCAAGTCACGCGAC--C--------------GACCCCTA-T-----------------------------------------------------------GGGGATAG-------------TGGTATCC----------------------------GTGTCTC-------------------AGCCATTACTAACATG--------TCTATTTC--GTTTC-------ACGTTCCG-CGACTATGCAGAAG---GC-------AGGCAGCCAGCGTGGATCGTTGACCAAGTCCCATATTGGC------ATGGCTGG-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....CTGGTCGGGTCTGGTGACTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.................................................................................................................................................................................AACAAGCG---GAT-------ATGTGT-CCTG............................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
AGAACTGGTCGGGTCTGGTGACTCTCTGTTTGGGTCAGGAGCGTGAGAAGGTA--------GCCGATTGATTTT--GCCATTACGGCTC------------------CACCCCC-------AGGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACAAGCG---AAT-------ATGTGT-CCTGTCCGGAAATTTAGCCAAGTCACGCGAC--T-CC-----T------------A-AT----------------------------------------------------------GTGGGGAT--------------GGTATCC----------------------------TTGTCTG-------------------AGCCATTACTAACATG--------TCTATTTC--GTTTC-------ACGTTTCG-CCACTATGCAGAAGCAGTC-------AGGCAGCCAGCGTGGATCATTGACCAAGTCGCACATGGGCATGGCAGGGGCCGG-SizeHit CountTotal NormTotal
No Reads
droKik1
AAAACTGGTCGGGCCTGGTGACTCTGTGCCTCGGCCAAGAGCGTGAGAAGGTA--------CCAGATTGATTTT--GACATTA-----------------------------------------ATGCTTGATGTCTTTTTAATGAATTG------ATGCATGTA--ACGAAATGTGAACATGGC---AAT-------GCATGCGCCTGTCTAGAAAATTGGCCAAGTCACGAA-CATC--------CC------------------------------------------------------------------------------------------------------------------------------------ATCCA-------------------TGCCCATACTAACAGC--------CACACTTGTGGTTTC---CTTTCCATTTCG-CCACCATGCAGAAGCAG-CAGCTGAGCAACAGCCAGCGCGGATCGCTGACCAAGTCGCATATAGGCGT------GG-CGG-SizeHit CountTotal NormTotal
No Reads
droFic1
AGAACTGGTCGGGTCTGGTGAATCTTTGCCTGGGGCAGGAGCGTGAGAAGGTA--------TTCGATTGATTTT--GCCATTTTGGTTC------------------CAA-----------TGGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AAT-------GTATGG-TTGGTCT-GAAATTTGGCCAAGTCACGCCAT--C-CC-----TTGTGGGAACTCAG-T-----------------------------------------------------------GGGGGTAC-------------AGGGAGT-----------------------------GTGTCTA-------------------AGCCGAAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCACCATGCAGAAG---GC-------AGGCAGCCAGCGCGGATCGCTGACCAAGTCGCATATAGGC------------GT-SizeHit CountTotal NormTotal
No Reads
droEle1
AGAACTGGTCGGGTCTGGTGAATCTCTACCTTGGGCAGGAGCGCGCAAAGGTA--------CACGATTGATTTT--GCCATTATGGTGG------------------CAA-----------TAGGTATTTGATATCTTTTTAATGAATTGATATTGATGCTTGTA--ACGGAATGTGAACACGAG---AATGGAATGTATGTGG-TTCGTCT-GAAAATTGGCCAAGTCACGCAA-ATAGTC-----TTGTGGGGATTCTAATC----------------------------------------------------------GGGGGTTT-TGAGGGTTTGATA--------------T--------------------ATATCTG-------------------CGGTTGAACTAACATG--------CATATTTG--GTTTC-------CCATTTCA-TCACCATGCAGAGGCCAGC-------GGGCAGCCAGCGCGGATCGCTGACCAAGTCACATTTGAGC------------GTTSizeHit CountTotal NormTotal
No Reads
droRho1
AGAACTGGTCGGGTCTGGTGAATCTTTGCTTGGGGCAGGAGCGTGAAAAGGTA--------TACGATTGATTTT--GTCATTATGGTTC------------------CAA-----------TAGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAAAGTGAACACGAG---AAT-------GTATGG-TTTGTCT-GAAATTTTGCCAAGTCACGCGA-A---TC-----TCGTGGTGATTCTA-TGGGCGGGGGGCGT--------------------------------------------------TTAT-------------ATGTAGT-----------------------------GTGCCTG-------------------CGGCAGAACTAACATG--------CATGTTCG--GTTTC-------CCATTTCA-TCACCATGCAGAGGCCAGC-------GAGCAGCCAGCGCGGATCGCTGACCAAGTCGCACATTGGC------------GT-SizeHit CountTotal NormTotal
No Reads
droBia1
AGAACTGGTCGGGTCTGGTGAATCTCTGCCTGGGGCAGGAGCGCGAGAAGGTA--------TACGATTGATTTT--GCCATTATGGTTA------------------CAA-----------TAGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AATG------GTATGG-ATTGTCT-GAAATTTGGCCAAGTCACGCCA-----TC-----TTGAGGGCGTTCTG-TG----------------------------------------------------------GGGG-ATA-------------A-----T-----------------------------GTGTCTA-------------------AGGCATTACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCGTCATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGTTCGCTGACCAAGTCCCACATAGGC------------GT-SizeHit CountTotal NormTotal
No Reads
droTak1
AAAACTGGTCGGGTCTGGTGAATCTTTGCCTGGGGCAGGAGCGCGACAAGGTA--------TACGATTGATTTT--GCCATTATGCTTA------------------CAA-----------TAGGTATTTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AAC-------GTATGG-ATTGCCG-AAAATTGATCCAAGTCACGCCAT--A-TC-----TTGGGGGAGTTCTA-TT----------------------------------------------------------GGGGGATA-------------T-----A-----------------------------GTGTCTA-------------------AGGTTTAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCATCATGCAGAGGCCAGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGC------------GT-SizeHit CountTotal NormTotal
No Reads
droEug1
AGAACTGGTCGGGCCTGGTGAATCTTTGCCTGGGGCAGGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTATAGTTA------------------CAA-----------TAGGTATTTGATGTCATTTTAATGAATTG------ATGCTTGTA--ACGAAATGTGAACACGGG---AAT-------GTATAG-ATTGACT-GAAATTTGGC--AGTCACGCCAT--A-TC-----TTGTGGGGGTTCTA-TT----------------------------------------------------------GGGAAATT-------------T-----A-----------------------------GTGTCTT-------------------AGGTTTAACAACCATG--------CATGTTCG--GTTTC-------CCATTTCA-TCATCATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCGCATATAGGT------------GT-SizeHit CountTotal NormTotal
No Reads
dm3
AGAACTGGTCGGGGCTGGTGAATCTTTATCTGGGCCAGGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTATGGTTA------------------CAA-----------TGGGGTATTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AACC------ATACGG-TTCGTCT-AAAATTTGACGAAGTCACGCCAT--T-TC-----TTGTGGGGATTCTA-TT----------------------------------------------------------GGGGGTTT-------------GGGTATCTCTGTGCTTCTA--------------------GCTG-------------------TGGCCTAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGC------------GT-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................ACGCCAT--T-TC-----TTGTGGGGATT...........................................................................................................................................................................................................................................................................................21117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATCTTTATCTGGGCCAGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................GAATTG------ATGCTTGTA--ACGGGA................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TG------ATGCTTGTA--ACGGGATGTG............................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................................................................................................ACGGGATGTGAACACGGG---AAC..............................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATCTGGGCCAGGAGCGTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TT----------------------------------------------------------GGGGGTTT-------------GGGTATCTCTG...........................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AATTG------ATGCTTGTA--ACGGGAT...............................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CTGGGCCAGGAGCGTGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010001000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-TCGACATGCAGAGGCCGGC-------.......................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................................................................GTA--ACGGGATGTGAACACGGG---.................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TA--------------------GCTG-------------------TGGCCTAACTAACATG--------................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................TGAATTG------ATGCTTGTA--ACGGG.................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................AATGAATTG------ATGCTTGTA--ACG...................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................GTATTGATGTCTTTTTAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................TA--ACGGGATGTGAACACGGG---A................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................................................................................CTTTTTAATGAATTG------ATGCTT...........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................ATTGATGTCTTTTTAATGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.......................................................................................................................................................................................................................................................TTGTGGGGATTCTA-TT----------------------------------------------------------GGGGG......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTTTAATGAATTG------ATGCTTGT.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................CTGGGCCAGGAGCGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................TCACGCCAT--T-TC-----TTGTGGGGA.............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ACGGGATGTGAACACGGG---AACT------.......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGATCGCTGACCAAGTCCC.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................GGTTT-------------GGGTATCTCTGTGCTT......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGCCAGCGCGGATCGCT..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................GGTATCTCTGTGCTTCTA--------------------GCT............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GGGGTTT-------------GGGTATCTCTGTGC........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TACGATTGATTTT--GCCATTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TA--ACGGGATGTGAACACGG.....................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTATCTGGGCCAGGAGCGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ATTG------ATGCTTGTA--ACGGGAT...............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................T--T-TC-----TTGTGGGGATTCTA-.......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TCTTTTTAATGAATTG------ATGCT............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGC-------AAGCAGCCAGCGCGGA.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TCT-AAAATTTGACGAAGTCACGCC...................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................GGCCAGGAGCGTGAGAAGGTA--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCA-TCGACATGCAGAGGC..................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ACGGGATGTGAACACGGG---AAA..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTA--ACGGGATGTGAACACGG.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG--GTTTC-------CCATTTCA-TCGAC............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GCCAT--T-TC-----TTGTGGGGATTC..........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................TTG------ATGCTTGTA--ACGGGATGT.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
..................................................................................................................................................ATTG------ATGCTTGTA--ACGGGATG..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTCA-TCGACATGCAGAGG...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-TCGACATGCAGAGGCCG................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GAGAAGGTA--------TACGATTGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..................................................................................ATGGTTA------------------CAA-----------TGGGGTATTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................AGGAGCGTGAGAAGGTA--------TACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................A-----------TGGGGTATTGATGTCTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................AT--T-TC-----TTGTGGGGATTCTA-TT----------------------------------------------------------...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................TATCTGGGCCAGGAGCGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................................................................................................TTGATGTCTTTTTAATGAATT........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTA------------------CAA-----------TGGGGTATTGATGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TGGTTA------------------CAA-----------TGGGGTATTGATGT......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................AATGAATTG------ATGCTTGTA--A.....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................A--ACGGGATGTGAACACGGG---A................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................TGTGGGGATTCTA-TT----------------------------------------------------------GGGGGT.....................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCA-TCGACATGCAGAGGCC.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...................................................................................................................................................................................................................................................................TA-TT----------------------------------------------------------GGGGGTTT-------------GGGTATCTGA............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TA--ACGGGATGTGAACACGGG---.................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTA--ACGGGATGTGAACACGGT---.................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATCTTTATCTGGGCCAGGAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TCTGTGCTTCTA--------------------GCTG-------------------TGG.....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TGAACACGGG---AACC------ATACGG-T...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............CTGGTGAATCTTTATCTGGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TT-------------GGGTATCTCTGTGCTTCTA--------------------...............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................CAGGAGCGTGAGAAGGTA--------TAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCAAGTCCCATATGGGC------------G..2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GTA--ACGGGATGTGAACACGGG---A................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TATTGATGTCTTTTTAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................GGTGAATCTTTATCTGGGCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
AGAACTGGTCGGGACTGGTGAATCTTTGCCTGGGCCACGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTATGGTTA------------------CAA-----------TAGGGTATTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AACC------ACACGG-TTCGTCT-AAAATTTGGCCAAGTCACGCCAT--T-TC-----TTGTGGGGATTCTA-TT----------------------------------------------------------GGGGGTTT-------------GGGTATCGCTGTGGTTCTA--------------------ACTG-------------------TGGCCTAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGC------------GT-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGACCAAGTCCCATAT...................1811.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCA-TCGACATGCAGAGGCC.................................................................2111.00100000000000001000
..................................................................................................................................................................................................................CT-AAAATTTGGCCAAGTCAC......................................................................................................................................................................................................................................................................................................................2011.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................GTATCGCTGTGGTTCTA--------------------ACT............................................................................................................................................................2011.00110000000000000000
..................................................................................................................................................................GTA--ACGGGATGTGAACACGG.....................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
....................................................................................................................................................................A--ACGGGATGTGAACACGGG---ATTT------.......................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
..............CTGGTGAATCTTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
droSec2
AGAACTGGTCGGGACTGGTGAATCTTTGCCTGGGCCACGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTATGGTTA------------------GAA-----------TAG---------GTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AACC------ACACGG-TTCGTCT-AAAATTTGGCAAAGTCACGCCAT--T-TC-----TTGTGGGGATTCAA-TG----------------------------------------------------------GGGGGTTT-------------GGGTATCGCTGTGGTTCTA--------------------ACTG-------------------TGGCCTAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGC------------GT-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............TGGTGAATCTTTGCCTGGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..................................................................................................................................................ATTG------ATGCTTGTA--ACGGGATG..............................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.......................................................................................................................................................................................................................................................TTGTGGGGATTCAA-TG----------------------------------------------------------GGGGG......................................................................................................................................................................................................................2111.0010100
..............................TGGGCCACGAGCGTGAGAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
droYak3
AGAACTGGTCGGGGCTAGTGAATCTTTACCTTGGCCAGGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTATGGTTA------------------CAA-----------TGGGATATTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AACC------ACACTG-TTTGTCG-AAAATTTGGCTAAGTCACGCCAT--A-TC-----TTGTGGGGATTCTA-TT----------------------------------------------------------GGGGGTAT-------------GGGCATC-----------------------------GTGGCTG-------------------TGGCCAAACTAACATG--------CATATTTG--GTTTC-------CCATTTCA-TCGACATGCAGAGGCCGGC-------GAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGC------------GT-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................T--A-TC-----TTGTGGGGATTCTA-TT----------------------------------------------------------G..........................................................................................................................................................................................................................2111.00101000000000
.......................................................................................................................................................................................................................................................................................................................................TAT-------------GGGCATC-----------------------------GTGGCTG-------------------TGGC....................................................................................................................................2111.00101000000000
droEre2
AGAACTGGTCGGGGCTGGTGAATCTTTGCCTGGGTCAGGAGCGTGAGAAGGTA--------TACGATTGATTTT--GCCATTAAGGTTA------------------CAA-----------TGGGATATTGATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACG--------------------G-TTCGTCT-AAAATTTGGCGAAGTCACGCCAT--A-TC-----TTGTGGGGATTCTA-TT----------------------------------------------------------GGGGGTAT-------------GGATATC-----------------------------GTGGCTG-------------------TGGCCTAACTAACATG--------CATATTCG--GTTTC-------CCATTTCA-TCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCCCATATCGGC------------GT-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:41 PM