ID:

dmo_108

 Coordinate:

scaffold_6541:1707134-1707193 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.9 -22.7 -22.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGATTTACTTATCAAATGAGTTGATCTATGTGGATAAAGCATGGATTTACTGTGTACTGAAAGCATAGTGACTCATTCGGAAATAGTACCTATCGCTTGCAGTATGAGTAATCTTATGTATGTTTTATCTTCAGTTGCAACTCCTACAAATGCAACCAAA

***********************************...((((((..(((((..((((((.((((((((..(((.(((....))))))..)))).)))).)))))).)))))..)))))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 V056

head

 M046

female body

 V049

head

 M060

embryo

 V041

embryo
......................................................................................TACCTATCGCTTGCAGTATGAGT................................................... 23 0 1 35.00 35 9 10 5 5 3 3
......................................................................................TACCTATCGCTTGCAGTATGAG.................................................... 22 0 1 25.00 25 6 5 4 4 2 4
......................................................................................TACCTATCGCTTGCAGTATGA..................................................... 21 0 1 5.00 5 0 2 0 3 0 0
......................................................................................TACCTATCGCTTGCAGTATGAGTT.................................................. 24 1 1 4.00 4 2 1 0 0 1 0
..................................................TGTGTACTGAAAGCATAGTGACT....................................................................................... 23 0 1 3.00 3 1 0 1 1 0 0
..................................................................................ATAGTACCTATCGCTTGCAGT......................................................... 21 0 1 2.00 2 0 0 2 0 0 0
......................................................................................TACCTATCGCTTGCAGTATG...................................................... 20 0 1 2.00 2 0 1 1 0 0 0
................................................................ATAGTGACTCATTCGGAAATAGTACCT..................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
......................................................................................TACCTATCGCTTGCAGTATGAGA................................................... 23 1 1 1.00 1 0 1 0 0 0 0
....................................................................................ATTACCTATCGCTTGCAGTATGAG.................................................... 24 1 1 1.00 1 0 0 1 0 0 0
......................................................................................TACCTATCGCTTGAAGTATG...................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................................................ATAGTACCTACCCCTTGCAGT......................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.................................ATAAAGCATGGATTTACTG............................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................TATCGCTTGCAGTATGAG.................................................... 18 0 1 1.00 1 0 0 0 0 1 0
......................................................................................TACCTATCGCTTGCAGTATGAGC................................................... 23 1 1 1.00 1 1 0 0 0 0 0
......................................................................................TACTTATCGCCTGCAGTATGAGT................................................... 23 2 1 1.00 1 0 0 0 0 1 0
...........................................................................................ATCGCTTGCAGTATGAGTAAT................................................ 21 0 1 1.00 1 0 0 1 0 0 0
......................................................................................TGCCTATCGCTTGCAGTATGAGT................................................... 23 1 1 1.00 1 0 0 0 0 1 0
......................................................................................TACCTATCGCTTGCAGTA........................................................ 18 0 1 1.00 1 0 0 0 1 0 0
......................................................................................CACCTATCGCTTGCAGCATGAGT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
......................................................................................TGCCTATCGCTTGCAGTATGAG.................................................... 22 1 1 1.00 1 0 0 0 0 1 0
......................................................................................TACCTATCGCTTTCAGTATGAGT................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TGTGTACTGAAAGCATAGTGACTT...................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0
......................................GCATGGATTTACTGTGTACTGAAAGCAT.............................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0
..........................................GGATTTACTGTGTACTGAAAGC................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................TGCAACTCCTACAAATGCAA..... 20 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................AACTCCTACAAATGCAACC... 19 0 1 1.00 1 0 0 0 0 1 0
......................................................................................TACCTATCGCTTGCAGTATGCG.................................................... 22 1 1 1.00 1 0 0 0 1 0 0
......................................................................................TACCTATCGCTTGAAGTATGAGT................................................... 23 1 1 1.00 1 0 0 0 1 0 0
......................................................................................TACCTATCGCTTGCAGTATGAA.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.........................CTATGTGGATAAAGCATGG.................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
................................................................ATAGTGACTCATTCGGAAATA........................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..................................................TGTGTACTGAAAGCATAGTGAC........................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0
......................................................................................TACCTATCGCTTGCAGTATGAGTCA................................................. 25 1 1 1.00 1 0 0 1 0 0 0
......................................................................................TACCTATCGCTTGCAGCATGAGTA.................................................. 24 1 1 1.00 1 0 0 1 0 0 0
..............................................TTACTGTGTACTGAAAGCATGGTGAC........................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0
............................................ATTTACTGTGTACTGAAAGCATAGTGACT....................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.GATTTACTTATCAAATGAGTTGAT....................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
....TTACTTATCAAATGAGTTG......................................................................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0
......................................................................................TCCCTATCGATTGCAGTATG...................................................... 20 2 3 0.33 1 0 1 0 0 0 0
.......................ATCTATGTTGAGAAAGCA....................................................................................................................... 18 2 9 0.33 3 0 2 0 1 0 0
......................................................................................TACCTATCTCTTGCAGTATCTG.................................................... 22 3 4 0.25 1 0 0 0 1 0 0

Anti-sense strand reads

ACTAAATGAATAGTTTACTCAACTAGATACACCTATTTCGTACCTAAATGACACATGACTTTCGTATCACTGAGTAAGCCTTTATCATGGATAGCGAACGTCATACTCATTAGAATACATACAAAATAGAAGTCAACGTTGAGGATGTTTACGTTGGTTT

************************************...((((((..(((((..((((((.((((((((..(((.(((....))))))..)))).)))).)))))).)))))..)))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V056

head

 V049

head
.......................................................................GAGGACGCCTTTATCATGGATA................................................................... 22 2 1 1.00 1 1 0
.......................................................................GAGTAAGCCGTGATCATGAATA................................................................... 22 3 3 0.33 1 0 1
.......................................................................................TGGAAAGCGAATGTCATAAT..................................................... 20 3 10 0.10 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6541:1707084-1707243 + dmo_108 confident TGAT--------------------TTACTTA-------------------------------------------------------------------TCAAATGAGTT-----------GATCT-ATGTGGATAAA----------------------------------------------------------------G------------------------------CATGG--------------------------ATTTAC------TGTGTACT----------------------GAAAGCATAGTGACTCATTCGGAAATAGTACCTATCGCTTGCAGTATGAGTAATCTTATGTATGTTTT-------------------------------------------------------------------------------------ATCTTCAGTTG---CAACTCCTA--CAA------------------------------------------------------ATGCAA-----------------------------CCAAA
droVir3 scaffold_13036:588437-588541 + ACCG--------------------ACAGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGCAGTCTCTGTCAGAGTACCTTCTGCTTGCAATATGGGTAAGCTGGTGTATGTAAT-------------------------------------------------------------------------------------ATCTTCAGTGG---CAACACCTA--CAA------------------------------------------------------CTCCGA-----------------------------CCCTA
droGri2 scaffold_15203:4419951-4420034 - TCTG--------------------TAACC-------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCTATTGTTTGCAAAATGAATAAAGTGGTGTATGTATT-------------------------------------------------------------------------------------TACCTCAGTTG---CATCGCCGG--TTG------------------------------------------------------GTGCAA-----------------------------CAAAA
droWil2 scf2_1100000004521:1182334-1182479 - GAAT--------------------CTGTTCG-------------------------------------------------------------------TCAAAAACGTT-----------GGTCA-A-----------ATATAAA-----------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------CAGTATT-CCTACCACAAAATTGGTTGAACATTCATTCTGAAATAGTTTTTGTCTTTTATGGAAGTCATCTAACAACCA------------------------------AATCCTCAACTGCAAT-TACTA-------------------------------------TTACAA-----------------------------GCAAG
dp5 Unknown_group_103:1143-1237 - AAAT--------------------ATTGTCT-------------------------------------------------------------------TTGATA----------GGAGCTGA-AGCTTCAGAAGAAATATACG--------------------------------------------------------------------------------------------AAT----------------------------TGTTCCG------TACA----------------------GTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTCTAAATCT------T-AAAGATTTATCCAGAAAT
droPer2 scaffold_2246:2162-2333 - TTAT--------------------TAATTTA----------------------------------------------------ATTTATTTATATTGGCGTGGACT--------GGGCCCAT-AA--------------------------------------------------------------------------------------------------------------------------------------------------------CCTATTGGTAGACTAGCTATGACAATTAGTA-----AACGGAAGACAGTACCAAGTTATGTTTTTCTTTAAAGATTAT----------------------------------------------------------------TTATGTATTTCTTGATT----------------------ACTTTTTGCTG---CAACACCGG--TCC------------------------------------------------------ACACAC--------------T-TG----------AGATCA
droAna3 scaffold_13334:685267-685317 + AGCC--------------------TTTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTT-------------------------------------------------------------------------------------TTCTTCTATTG---ATTCTCTTG--AAA------------------------------------------------------ATAAAA-----------------------------ACAAA
droBip1 scf7180000395142:32109-32178 - TAAT--------------------TTATTTC-TAGTTCTAAGAATAAGGCATTTGAGGCATACAAAAACATAATATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAA-----------------------------ATAAT
droKik1 scf7180000302590:78777-78933 + TTCTTTAAA------------------TATC-CAGGCGAGTGAATCAAGCC------------------------------------------------------ATTT-----------TATAT-AAAT--------CTATA--AGCTGGGGTTTATTTTAAATAGAGCATGGTTTCAAAACTCATCAAGGGAAATCCAAATAATTTTTTTCATTATTAAAATGGAAATAT-------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------------------------TTATATT------------------------------------------------------------------------------------------------A--TATA-TTT--------------------------------------TTT
droFic1 scf7180000453769:5842-5916 - AATT--------------------TGGGG---------------------------------------------------------------------TCAAATGGGGT-----------CAAAA-AATAGAAAAAA----------------------------------------------------------------G------------------------------AATGAA----------------------TGGAT------CGGTTAAGTTCT----------------------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA-----------------------------------------------TA-G--------------------------------------GTACT
droEle1 scf7180000490489:11078-11207 - CTGTACCATTGACTTACCAAATTGAAAATA---------ATGCAGTACAAG-------T----------------------------------GTTAAAAAATTGTGTTCGAACGT----------GTTAAAAACAC----------------------------------------------------------------GAAATTTTATACATTGC----------------------------------------------T---------------------------------------------------------------------------TGCTTAAAATACGAA----------------------------------------------------------------------ATATTTT------------------------------------------------------------------------------------------------AAGTGTC-TTT--------------------------------------TAT
droRho1 scf7180000759908:15346-15501 - TAAC--------------------TTATTTTACAGACTTTTGAATAATGAT---------------------------------------------TTCTAA---------------------------------------------------ATCATTTTATT---------------------------------------------------------------------------------------------------------------------------------------------TAAAGCTTAATTACCGATTGATAACTGTTATTTCTTGTTTAAAATATCAA----------------------------------------------------------------------ATATAA------------AATTGAGAAAATCTTTACTCCGCTTATGATTTCTCTCA--GTG------------------------------------------------------CACACA-----------------------------CCCAA
droBia1 scf7180000302433:9753-9865 - ATAT--------------------TTATATA-------------------------------------------------------------------TCAAAAGAATT-----------CATAT-ATATAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTATTTATTACA----------------------------------------------------------------------------------------TTAA--TGAGTCGAACTAATGTCCCGTCATTTAAATTTTGATTTCACTTATTTAAGTTTTAG--------------------------------------TTT
droTak1 scf7180000415941:338694-338823 + ATAT--------------------TTCAAAA---------------A---------------------TGAAATATAAATTAAGTTTATTAATGTTTGTTTGATGTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT------TGTGTAGG----------------------TAAAGTTTAATAACCGCTTCAAA--TTGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATAAATCTGATTTTTACAAATTTTATAAATGTTT
droEug1 scf7180000409027:17786-17905 + TAAT--------------------TATTTTG-------------------------------------------------------------------TGTAATATTTT-----------AAAG-----------------------------------------------------------------------------------------ATAAG-----TGGAAAAAAAATTAATTTATCTCTTTTGGCACAAGTTTAAGT---------------------------------------------------------------------------CGGTAAAAACGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGTAGTTTAAAGTATAGC-TTATCCTCGG-----------------------------CTGTA
dm3 chr4:769657-769732 - TAAT--------------------CTTAATA---------------T---------------------------------------------TGTTTGCCAAATGTGTT-----------TAAAT-GTTAAGCCAAA----------------------------------------------------------------G------------------------------CAGGT--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------TAATG
droSim2 2l:21033289-21033441 - TGGC--------------------TTACTTA-------------------------------------------------------------------AG-------------------------ACTAAGGAGCCA-ATACAAAAA--------TTTCCAAAGCAGAAAATAGTTTTGAAATGTGTAA-------------------------------------------ACTGAA----------------------------TGTACCTGGCA----------------------------------------------------------------------------------------------------------AATAGT------------------------------------------------------------CC------------------------------AATCAAAAACATTAACGTGTTATCATCGGCAGTTGGAGTATATTACTATGTATT-TTA--------------------------------------TCT
droSec2 scaffold_28:298602-298755 - TGGC--------------------TTACTTA-------------------------------------------------------------------AG-------------------------ACTAAGGAGCCAAATACAAAAA--------TTTCCAATGCAGAAAATAGTTTTGAAATGTGTAA-------------------------------------------ACTGAA----------------------------TGTACCTGGCA----------------------------------------------------------------------------------------------------------AATAGT------------------------------------------------------------CC------------------------------AATCAAAAACATTAACGTGTTATCATCGGCAGTTGGAGTATATTACTATGTATT-TTA--------------------------------------TCT
droYak3 2R:10750491-10750547 + AAAA--------------------TTTAAAA-------------------------------------------------------------------TTATAAAT-----------------------------------------------------------------------------------------------------------ATTTT-----TGGGAATAAAGTAG--------------------------------------------------------------------------------------------------------------------AT----------------------------------------------------------------------TTAATT-------------------------------------------------------------------------------------------------------------TGAGTG-----------------------------CTAAA
droEre2 scaffold_4784:23832881-23832949 - AGAA--------------------CTGCTTT-------------------------------------------------------------------TCAACAGACTA-------------TAA----------------------------TTTATTTTGGTTGAA---------------------------------G------------------------------CT--------------------------TGCCT------TGGTCAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAA-----------------------------CCATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGAT--------------------TTACTTA-------------------------------------------------------------------TCAAATGAGTT-----------GATCT-ATGTGGATAAA----------------------------------------------------------------G------------------------------CATGG--------------------------ATTTAC------TGTGTACT----------------------GAAAGCATAGTGACTCATTCGGAAATAGTACCTATCGCTTGCAGTATGAGTAATCTTATGTATGTTTT-------------------------------------------------------------------------------------ATCTTCAGTTG---CAACTCCTA--CAA------------------------------------------------------ATGCAA-----------------------------CCAAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............................................................................................................................................................................................................................................................................................................................................TACCTATCGCTTGCAGTATGAGT................................................................................................................................................................................................................................23135.00355351039
.............................................................................................................................................................................................................................................................................................................................................TACCTATCGCTTGCAGTATGAG.................................................................................................................................................................................................................................22125.0025444526
.............................................................................................................................................................................................................................................................................................................................................TACCTATCGCTTGCAGTATGA..................................................................................................................................................................................................................................2115.005003200
.............................................................................................................................................................................................................................................................................................................................................TACCTATCGCTTGCAGTATGAGTT...............................................................................................................................................................................................................................2414.004000112
...................................................................................................................................................................................................................................................................................TGTGTACT----------------------GAAAGCATAGTGACT....................................................................................................................................................................................................................................................................2313.003101001
.........................................................................................................................................................................................................................................................................................................................................ATAGTACCTATCGCTTGCAGT......................................................................................................................................................................................................................................2112.002200000
.............................................................................................................................................................................................................................................................................................................................................TACCTATCGCTTGCAGTATG...................................................................................................................................................................................................................................2012.002100100
.......................................................................................................................................................................................................................................................................................................................ATAGTGACTCATTCGGAAATAGTACCT..................................................................................................................................................................................................................................................2712.002000002
.............................................................................................................................................................................................................................................................................................................................................TACCTATCGCTTGCAGTATGAGA................................................................................................................................................................................................................................2311.001000100
....................................................................................................................................ATAAA----------------------------------------------------------------G------------------------------CATGG--------------------------ATTTAC------TG...............................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................TATCGCTTGCAGTATGAG.................................................................................................................................................................................................................................1811.001000010
.............................................................................................................................................................................................................................................................................................................................................TACCTATCGCTTGCAGTATGAGC................................................................................................................................................................................................................................2311.001000001
..................................................................................................................................................................................................................................................................................................................................................ATCGCTTGCAGTATGAGTAAT.............................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................TACCTATCGCTTGCAGTA.....................................................................................................................................................................................................................................1811.001001000
...................................................................................................................................................................................................................................................................................TGTGTACT----------------------GAAAGCATAGTGACTT...................................................................................................................................................................................................................................................................2411.001001000
.........................................................................................................................................................................................................G------------------------------CATGG--------------------------ATTTAC------TGTGTACT----------------------GAAAGCAT...........................................................................................................................................................................................................................................................................2811.001100000
...........................................................................................................................................................................................................................................GG--------------------------ATTTAC------TGTGTACT----------------------GAAAGC.............................................................................................................................................................................................................................................................................2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---CAACTCCTA--CAA------------------------------------------------------ATGCAA-----------------------------.....2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCTA--CAA------------------------------------------------------ATGCAA-----------------------------CC...1911.001000010
.............................................................................................................................................................................................................................................................................................................................................TACCTATCGCTTGCAGTATGAA.................................................................................................................................................................................................................................2211.001000100
...........................................................................................................................CT-ATGTGGATAAA----------------------------------------------------------------G------------------------------CATGG--------------------------.............................................................................................................................................................................................................................................................................................................................1911.001000001
.......................................................................................................................................................................................................................................................................................................................ATAGTGACTCATTCGGAAATA........................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................................................................................................................TGTGTACT----------------------GAAAGCATAGTGAC.....................................................................................................................................................................................................................................................................2211.001100000
.......................................................................................................................................................................................................................................................................ATTTAC------TGTGTACT----------------------GAAAGCATAGTGACT....................................................................................................................................................................................................................................................................2911.001000001
.GAT--------------------TTACTTA-------------------------------------------------------------------TCAAATGAGTT-----------GAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
........................TTACTTA-------------------------------------------------------------------TCAAATGAGTT-----------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000100
droVir3
ACCG--------------------ACAGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGCAGTCTCTGTCAGAGTACCTTCTGCTTGCAATATGGGTAAGCTGGTGTATGTAAT-------------------------------------------------------------------------------------ATCTTCAGTGG---CAACACCTA--CAA------------------------------------------------------CTCCGA-----------------------------CCCTASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTA--CAA------------------------------------------------------CTCCGA-----------------------------CCC..1912.0020000000000000000000000000000000000000000000000000000000000000000200000000000000
............................TAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGCAGTCTCTGTCAGAGTACC...................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000200000000000000
..............................................................................................................................................................................................................................................................................................................................................ACCTTCTGCTTGCAATATGGGTAAGCTC..........................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000200000000000000
...........................................................................................................................................................................................................................................................................................................................................................AATATGGGTAAGCTGGTGTATG...................................................................................................................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TTGCAATATGGGTAAGCTGGTGTATG...................................................................................................................................................................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TCTCTGTCAGAGTACCTTCTGCTTGC.........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000100000000000000
.........................................................................................................................................................................................................................................................................................................................................................GCAATATGGGTAAGCTGGT........................................................................................................................................................................................................................1911.0010000000000010000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTA--CAA------------------------------------------------------CTCCGA-----------------------------CCCTA2011.0010000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGG---CAACACCTA--CAA------------------------------------------------------CTCCG...................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGCAGTCTCTGTCAGA........................................................................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTCTGCTTGCAATATGGGTAAGCTGG.........................................................................................................................................................................................................................2611.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGCAGTCTCTGTCAGAGTACCTTC................................................................................................................................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TATGGGTAAGCTGGTGTATGTAAT-------------------------------------------------------------------------------------ATC.......................................................................................................................2711.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ATGTAAT-------------------------------------------------------------------------------------ATCTTCAGTGG---CAACACCT....................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000100000000000000
..............................................................................................................................................................................................................................................................................................................................................ACCTTCTGCTTGCAATATGGG.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
...........................................................................................................................................................................................................................................................................................................................CAGCAGTCTCTGTCAGAGTACCTTCT...............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
.........................................................................................................................................................................................................................................................................................................................ACCAGCAGTCTCTGTCAGAGTACCT..................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000100000000000000
................................................................................................................................................................................................................................................................................................................................................CTTCTGCTTGCAATATGGGT................................................................................................................................................................................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGCAGTCTCTGTCAGAGTAC....................................................................................................................................................................................................................................................2411.0010000000000000000000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GTAAGCTGGTGTATGTAAT-------------------------------------------------------------------------------------ATCTTC....................................................................................................................2511.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTA--CAA------------------------------------------------------CTCCGA-----------------------------CCCT.1811.0010000000000000000000000000000000000000000000000000000000000000000100000000000000
droGri2
TCTG--------------------TAACC-------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCTATTGTTTGCAAAATGAATAAAGTGGTGTATGTATT-------------------------------------------------------------------------------------TACCTCAGTTG---CATCGCCGG--TTG------------------------------------------------------GTGCAA-----------------------------CAAAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droWil2
GAAT--------------------CTGTTCG-------------------------------------------------------------------TCAAAAACGTT-----------GGTCA-A-----------ATATAAA-----------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------CAGTATT-CCTACCACAAAATTGGTTGAACATTCATTCTGAAATAGTTTTTGTCTTTTATGGAAGTCATCTAACAACCA------------------------------AATCCTCAACTGCAAT-TACTA-------------------------------------TTACAA-----------------------------GCAAGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
dp5
AAAT--------------------ATTGTCT-------------------------------------------------------------------TTGATA----------GGAGCTGA-AGCTTCAGAAGAAATATACG--------------------------------------------------------------------------------------------AAT----------------------------TGTTCCG------TACA----------------------GTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTCTAAATCT------T-AAAGATTTATCCAGAAATSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droPer2
TTAT--------------------TAATTTA----------------------------------------------------ATTTATTTATATTGGCGTGGACT--------GGGCCCAT-AA--------------------------------------------------------------------------------------------------------------------------------------------------------CCTATTGGTAGACTAGCTATGACAATTAGTA-----AACGGAAGACAGTACCAAGTTATGTTTTTCTTTAAAGATTAT----------------------------------------------------------------TTATGTATTTCTTGATT----------------------ACTTTTTGCTG---CAACACCGG--TCC------------------------------------------------------ACACAC--------------T-TG----------AGATCASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGATT----------------------ACTTTTTGCTG---CAA.........................................................................................................26208.0016001600000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGATT----------------------ACTTTTTGCTG---C...........................................................................................................24202.45490490000
...............................................................................................................................................................................................................................................................................................................TAGTA-----AACGGAAGACAGTACCAAGT.......................................................................................................................................................................................................................................................25200.55111010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTGATT----------------------ACTTTTTGCTG---CAACA.......................................................................................................27200.255050000
........................................................................................................................................................................................................................................................................................................TGACAATTAGTA-----AACGGAAGACAG...............................................................................................................................................................................................................................................................24200.153030000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCTTGATT----------------------ACTTTTTGCTG---CAA.........................................................................................................27200.153030000
......................................................................................................................................................................................................................................................................................................TATGACAATTAGTA-----AACGGAAGACAG...............................................................................................................................................................................................................................................................26200.153003000
..............................................................................................................................................................................................................................................................................................................TTAGTA-----AACGGAAGACAGTAC............................................................................................................................................................................................................................................................21200.102200000
.......................................................................................................................................................................................................................................................................................................ATGACAATTAGTA-----AACGGAAGACA................................................................................................................................................................................................................................................................24200.051010000
.....................................................................................................................................................................................................................................................................................................................................TACCAAGTTATGTTTTTCTTTAAAGATA...................................................................................................................................................................................................................................28200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGATT----------------------ACTTTTTGCTG---CAACACCG....................................................................................................24200.051010000
................................................................................................................................................................................................................................................................................................................AGTA-----AACGGAAGACAGTACCAAC........................................................................................................................................................................................................................................................23200.051010000
............................................................................................................................................................................................................................................................................................................AATTAGTA-----AACGGAAGACAGTACCAAG........................................................................................................................................................................................................................................................27200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGATT----------------------ACTTTTTGC.................................................................................................................21200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGATT----------------------ACTTTTTGCTG---CA..........................................................................................................25200.051001000
..........................................................................................................................................................................................................................................................................................................ACAATTAGTA-----AACGGAAGAC.................................................................................................................................................................................................................................................................20200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGATT----------------------ACTTTTTGCTG---............................................................................................................23200.051000010
......................................................................................................................................................................................................................................................................................................TATGACAATTAGTA-----AACGGAAGACAT...............................................................................................................................................................................................................................................................26200.051010000
....................................................................................................TGGACT--------GGGCCCAT-AA--------------------------------------------------------------------------------------------------------------------------------------------------------CCTAT..........................................................................................................................................................................................................................................................................................................21200.051010000
droAna3
AGCC--------------------TTTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTT-------------------------------------------------------------------------------------TTCTTCTATTG---ATTCTCTTG--AAA------------------------------------------------------ATAAAA-----------------------------ACAAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
No Reads
droBip1
TAAT--------------------TTATTTC-TAGTTCTAAGAATAAGGCATTTGAGGCATACAAAAACATAATATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAA-----------------------------ATAATSizeHit CountTotal NormTotal
No Reads
droKik1
TTCTTTAAA------------------TATC-CAGGCGAGTGAATCAAGCC------------------------------------------------------ATTT-----------TATAT-AAAT--------CTATA--AGCTGGGGTTTATTTTAAATAGAGCATGGTTTCAAAACTCATCAAGGGAAATCCAAATAATTTTTTTCATTATTAAAATGGAAATAT-------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------------------------TTATATT------------------------------------------------------------------------------------------------A--TATA-TTT--------------------------------------TTTSizeHit CountTotal NormTotal
No Reads
droFic1
AATT--------------------TGGGG---------------------------------------------------------------------TCAAATGGGGT-----------CAAAA-AATAGAAAAAA----------------------------------------------------------------G------------------------------AATGAA----------------------TGGAT------CGGTTAAGTTCT----------------------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA-----------------------------------------------TA-G--------------------------------------GTACTSizeHit CountTotal NormTotal
No Reads
droEle1
CTGTACCATTGACTTACCAAATTGAAAATA---------ATGCAGTACAAG-------T----------------------------------GTTAAAAAATTGTGTTCGAACGT----------GTTAAAAACAC----------------------------------------------------------------GAAATTTTATACATTGC----------------------------------------------T---------------------------------------------------------------------------TGCTTAAAATACGAA----------------------------------------------------------------------ATATTTT------------------------------------------------------------------------------------------------AAGTGTC-TTT--------------------------------------TATSizeHit CountTotal NormTotal
No Reads
droRho1
TAAC--------------------TTATTTTACAGACTTTTGAATAATGAT---------------------------------------------TTCTAA---------------------------------------------------ATCATTTTATT---------------------------------------------------------------------------------------------------------------------------------------------TAAAGCTTAATTACCGATTGATAACTGTTATTTCTTGTTTAAAATATCAA----------------------------------------------------------------------ATATAA------------AATTGAGAAAATCTTTACTCCGCTTATGATTTCTCTCA--GTG------------------------------------------------------CACACA-----------------------------CCCAASizeHit CountTotal NormTotal
No Reads
droBia1
ATAT--------------------TTATATA-------------------------------------------------------------------TCAAAAGAATT-----------CATAT-ATATAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTATTTATTACA----------------------------------------------------------------------------------------TTAA--TGAGTCGAACTAATGTCCCGTCATTTAAATTTTGATTTCACTTATTTAAGTTTTAG--------------------------------------TTTSizeHit CountTotal NormTotal
No Reads
droTak1
ATAT--------------------TTCAAAA---------------A---------------------TGAAATATAAATTAAGTTTATTAATGTTTGTTTGATGTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT------TGTGTAGG----------------------TAAAGTTTAATAACCGCTTCAAA--TTGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATAAATCTGATTTTTACAAATTTTATAAATGTTTSizeHit CountTotal NormTotal
No Reads
droEug1
TAAT--------------------TATTTTG-------------------------------------------------------------------TGTAATATTTT-----------AAAG-----------------------------------------------------------------------------------------ATAAG-----TGGAAAAAAAATTAATTTATCTCTTTTGGCACAAGTTTAAGT---------------------------------------------------------------------------CGGTAAAAACGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGTAGTTTAAAGTATAGC-TTATCCTCGG-----------------------------CTGTASizeHit CountTotal NormTotal
No Reads
dm3
TAAT--------------------CTTAATA---------------T---------------------------------------------TGTTTGCCAAATGTGTT-----------TAAAT-GTTAAGCCAAA----------------------------------------------------------------G------------------------------CAGGT--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------TAATGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.......................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------TAATG2515.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................T--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------TAAT.2514.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...T--------------------CTTAATA---------------T---------------------------------------------TGTTTGCCAAATGTGTT-----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................T--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------TA...2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TT-----------TAAAT-GTTAAGCCAAA----------------------------------------------------------------G------------------------------CAGGT--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................T--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------TAATG2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------ACT....................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TA---------------T---------------------------------------------TGTTTGCCAAATGTGTT-----------TAAAT-G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TTGCCAAATGTGTT-----------TAAAT-GT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TGTGTT-----------TAAAT-GTTAAGCCAAA----------------------------------------------------------------G------------------------------CA..........................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TAAGCCAAA----------------------------------------------------------------G------------------------------CAGGT--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGG..............................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GGT--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------ACT....................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
TAAT--------------------CTTAATA---------------T---------------------------------------------TGTTTGCCAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTAAGCCAAA----------------------------------------------------------------G------------------------------CAGGT--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGG..............................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------.....1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................AA----------------------------------------------------------------G------------------------------CAGGT--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------AC.....................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------TAATG2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------T....2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------TAAT.2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TAAGCCAAA----------------------------------------------------------------G------------------------------CAGGT--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGAC............................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................T--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------.....2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CAAA----------------------------------------------------------------G------------------------------CAGGT--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TGGACTGA--------------------------------------------------AC.....................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TAAGCCAAA----------------------------------------------------------------G------------------------------CAGGT--------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---GC--TG...............................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGTT-----------TAAAT-GTTAAGCCAAA----------------------------------------------------------------G------------------------------CAGGT--------------------------.............................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA---GC--TGGACTGA--------------------------------------------------ACTGA-----------------------------T....2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TA---------------T---------------------------------------------TGTTTGCCAAATGTGTT-----------TAAAT-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGGC--------------------TTACTTA-------------------------------------------------------------------AG-------------------------ACTAAGGAGCCA-ATACAAAAA--------TTTCCAAAGCAGAAAATAGTTTTGAAATGTGTAA-------------------------------------------ACTGAA----------------------------TGTACCTGGCA----------------------------------------------------------------------------------------------------------AATAGT------------------------------------------------------------CC------------------------------AATCAAAAACATTAACGTGTTATCATCGGCAGTTGGAGTATATTACTATGTATT-TTA--------------------------------------TCTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...............................................................................................................................................................................TTTGAAATGTGTAA-------------------------------------------ACTGAA----------------------------TGTACC....................................................................................................................................................................................................................................................................................................................2612.00200000010100000000
...........................CTTA-------------------------------------------------------------------AG-------------------------ACTAAGGAGCCA-ATACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCAGTTGGAGTATATTACTATGTATT-T...........................................3011.00100000010000000000
.............................TA-------------------------------------------------------------------AG-------------------------ACTAAGGAGCCA-ATACAAAAA--------T........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
droSec2
TGGC--------------------TTACTTA-------------------------------------------------------------------AG-------------------------ACTAAGGAGCCAAATACAAAAA--------TTTCCAATGCAGAAAATAGTTTTGAAATGTGTAA-------------------------------------------ACTGAA----------------------------TGTACCTGGCA----------------------------------------------------------------------------------------------------------AATAGT------------------------------------------------------------CC------------------------------AATCAAAAACATTAACGTGTTATCATCGGCAGTTGGAGTATATTACTATGTATT-TTA--------------------------------------TCTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.....................................................................................................................................GCCAAATACAAAAA--------TTTCCAATGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
droYak3
AAAA--------------------TTTAAAA-------------------------------------------------------------------TTATAAAT-----------------------------------------------------------------------------------------------------------ATTTT-----TGGGAATAAAGTAG--------------------------------------------------------------------------------------------------------------------AT----------------------------------------------------------------------TTAATT-------------------------------------------------------------------------------------------------------------TGAGTG-----------------------------CTAAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
No Reads
droEre2
AGAA--------------------CTGCTTT-------------------------------------------------------------------TCAACAGACTA-------------TAA----------------------------TTTATTTTGGTTGAA---------------------------------G------------------------------CT--------------------------TGCCT------TGGTCAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAA-----------------------------CCATASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 10/20/2015 at 07:01 PM