ID:

dmo_1065

 Coordinate:

scaffold_6496:9820692-9820985 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-49.7 -49.6 -49.6

Flybase annnotation

exon [dmoj_GLEANR_5227:3]; CDS [Dmoj\GI20365-cds]; exon [dmoj_GLEANR_5227:4]; CDS [Dmoj\GI20365-cds]; intron [Dmoj\GI20365-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGACGATGATGCCGACAATGATGAGGAGCAAGCGCGTCGCAGCGAAGCTGTGAGTATACCTGGCTTTTGTGCTCTTCCAATTTCAGCTATTGCATTTTATGATTTCGCTCATCTAATATAATTCGACGCACGGCCAGTTTTATGCACAGTCCTTTTATGCCGTACCGCAAACCGTAAGTGCATGTCTATCGAGTGCTATGTCCTTTCTAATCGCTAGTTTTGTACGTGTGCCGCTTCTTAACTGCTTACTGTATTTGCTGTAGAATATATATATATAAATCTGTGTATATATGTTAATTATATTATTTTGATACGCTCATTAACAATTTTATTATCCACGCAGGATCAGGTCAGCTTTCGTTCACCGGCCACTGAGCGTACGCCCATTCTGGC
**************************************************((((((....((((((...((((...((.((((...((....))(((..((((......))))..)))..)))).)).))))))))))......(((.((.....)).)))..(((.((((((.(((((((...((.((..(((((((((((.....(((.....)))......))))).)).))))..))))))))))).))..)))).))).((((((((((((((....)))))))))))))).((((........))))..)))))).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V049
head
 M060
embryo
 V056
head
..........................................................................................................................................................ATGAGGCCGTACCGCAAACC............................................................................................................................................................................................................................ 20 3 2 1.50 3 0 0 3 0 0
.........................................................TACCTGGCTTTTGTGCTCTTCCAATT....................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................CTTTCGTTCACCGGCCAC..................... 18 0 1 1.00 1 1 0 0 0 0
............................GCAAGCGCGTCGCAGCGAAGCTG....................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................CCACTGAGCGTACGCCCATTCTGG. 24 0 1 1.00 1 0 1 0 0 0
.........................GGAGCAAGCGCGTCGCAGCGA............................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTTCACCGGCCACTGAGCGT.............. 26 0 1 1.00 1 1 0 0 0 0
................................GCGCGTCGCAGCGAAGCTCTCAAT.................................................................................................................................................................................................................................................................................................................................................. 24 3 1 1.00 1 0 0 0 0 1
.........ATGCCGACAATGATGAGGA.............................................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0
............................GCAAGCGCGTCGCAGCGAAGCTGTG..................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
....................GATGAGGAGCAAGCGCGTC................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................CTGAGCGTACGCCCATTCTGG. 21 0 1 1.00 1 0 1 0 0 0
.........................................................TACCTGGCTTTTGTGCTCTTCC........................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0
.............................CAAGCGCGTCGCAGCGAAGCT........................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................CCGTACCGCAAACCGACAC....................................................................................................................................................................................................................... 19 3 8 1.00 8 8 0 0 0 0
............................................................................................................................................................TTACCCGTACCGCAAACCG........................................................................................................................................................................................................................... 19 3 7 0.86 6 6 0 0 0 0
...............................................................................................................................................................CCCGTACCGCAAACCGACA........................................................................................................................................................................................................................ 19 3 20 0.25 5 5 0 0 0 0
...........................................................CCGGTCTTTTGCGCTCTTCC........................................................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0
................................................................................................................................................................CCGTACCGCAAACCGAAGT....................................................................................................................................................................................................................... 19 3 8 0.13 1 0 1 0 0 0
.............................................................................................................TCATCTTATATGATTCGA........................................................................................................................................................................................................................................................................... 18 2 14 0.07 1 1 0 0 0 0
.............................................................................................................................................................AACCCGTACCGCAAACCGA.......................................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 1 0 0
.............................................................................................................................................................GTACCGTACCCCAAACCG........................................................................................................................................................................................................................... 18 3 19 0.05 1 0 0 0 1 0
.............................................................................................................................................................TACCCGTACCGCAAACCG........................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TGCTGCTACTACGGCTGTTACTACTCCTCGTTCGCGCAGCGTCGCTTCGACACTCATATGGACCGAAAACACGAGAAGGTTAAAGTCGATAACGTAAAATACTAAAGCGAGTAGATTATATTAAGCTGCGTGCCGGTCAAAATACGTGTCAGGAAAATACGGCATGGCGTTTGGCATTCACGTACAGATAGCTCACGATACAGGAAAGATTAGCGATCAAAACATGCACACGGCGAAGAATTGACGAATGACATAAACGACATCTTATATATATATATTTAGACACATATATACAATTAATATAATAAAACTATGCGAGTAATTGTTAAAATAATAGGTGCGTCCTAGTCCAGTCGAAAGCAAGTGGCCGGTGACTCGCATGCGGGTAAGACCG
**************************************************((((((....((((((...((((...((.((((...((....))(((..((((......))))..)))..)))).)).))))))))))......(((.((.....)).)))..(((.((((((.(((((((...((.((..(((((((((((.....(((.....)))......))))).)).))))..))))))))))).))..)))).))).((((((((((((((....)))))))))))))).((((........))))..)))))).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:9820642-9821035 + dmo_1065 ACGAC---GATGATGCCGACAATGATGAGGAGCAAGCGCGTCGCAGCGAAGCTGTGAGTATACCTGGCTTTTGTGCTCTTCCAAT-----------------TTCAGCTA------------------------------------------------------------TTGCATTT--TATGATTTCG-----------------------CTCATCTAAT--ATAATTCGA---------CGCACGGC--CAGTTTTATGCACAGTCCTTTTATGCCGTACCGCAAACCGTAAGTGCATGTCTATCG-------AG-------TGC--------------TATGT----------------------------------CCTT-----TCTAATCGCTAGT-------TTTGTACGTGTGCCGCTTCTTAACT-GCTTACTGTATTTGCTGTAGAATATATATA-----TATAAATCTGTGTATATAT--------------G-------------------------------------------------TTA--------ATTATATTATTTTGATACGCTCATTAACAATTTTATTATCCACGCAGGATCAGGTCAGCTTTCGTTCACCGGCCACTGAGCGTACGCCCATTCTGGC------------------
droVir3 scaffold_12875:14359456-14359844 + dvi_6850 ATGAC---GATGA------TGACGATGAGGAACAGGCGCGTCACACCGAAGCCGTAAGTATTTAATG--------TTCT--CGCTTTCAGCAATT--------------------------------------------GTTG--------------------------CTTGCATTT--T-TGACTTTTTAT-TTAAATAAAATACACA---CTCATCTCAA--ATAATTTGCCG----TA-TGC-CTGC-GCAGTTTTATGCCCAGTCCGTTTATGCCGCCCAACAAACCGTAAGTGCATGCATC----------CCACAT-T-TGT-----------------------------------------------------CTTT-TCCATGTGTCG-----T--ACGCTTCTGTGTTTGTTGCGCCTCTT---CAGCT--------------------AATTCTT-----TATAAATCTGTAT-TATAT--------------GTCCGATTCGCTTTGTGCTT-CTGCTCATA-------TTGATTACATACATTT----T--T---------------------------------------CCCTGCAGGATCAGGTTAGCTATCGCCCAGCGCCCACCGAACGCACCCCCATCCTGTC------------------
droGri2 scaffold_15245:14342794-14343219 + ACGGT---GATGA------TGATGATGAGGAACAGGCGCGCCACAGCGAAGCCGTGAGTATTTCT---------------------------------------------------ACTCA----T--TTACCCAATCCA---------------------------GTTTTGCATTT--T-TGATTTCTTCAACTAAATTAAACACACAATACTCATTCAAACCAAAATTTGG----CGTA-TGCTCG--CGCAGTTTTTTAGCCATTCCGGTTATGCTGAATATCAAACCGTAAGTGCATGCATC-C--------AGC-AAAT-TGCTTTTTCCCGTGTGTTATACGCTCTCCTCTCTCTTTCTCTCTCTCTCTATTTGTGTTGTGTGGTATCCTAGACAGT--TCTCTTTTCTACAAATATTAATATAT---A-------------------------------TGTAT-------------------AT--------CCAT------TTAATATTGACCTAGTTACTTATA-------TT--AATTGTATATTTCT-A--------------------------------------------ACTGCAGGATCAAGTCAGCTATAGACCCTTGCCCACTGAGCGCACCCCCATCCTGAC------------------
droWil2 scf2_1100000004513:14229-14314 + ACAAT---GA---------CAATGATGAGGAGGAAGCACGTCATAATGCAAGTGTAAGTAACTTTAA-----------------------------------CTTATATT-T--TTAGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTCAGTTAATAC------------------
dp5 3:3640273-3640645 + A------------------TGGCGACGAGGAGCAAGTGCGCCACAACGATGCCGTAAGTATTCCC-------------------TTTCGGCAATTATGCTGATTCAAGCG-A--GAACCAATGGC-CTCCTCCGCATGTT-----CAGATAGTCCGAATTC-CCTATTTTTGGAGAAT--T-TAATTTCTTAA-GTGTATCC-----A------------------TGTT----CGCGTGTT-TGCTCGGCTGTAGTTGGTAGTCATGCCTGGGTATGGCATTTCGGAAACCGTAAGTGCATGATTC----------AGT-GT-T-TGC-----------------------------------------------------TTTCCC-------------TAA--TGGCTTCTGTAATATTTGCGCGCTTT------------------------------------GACCCACGA--------A----TATCCAC-----------------------------------GAATCAATCAAT--AATCGAATCTTTCC-TA--C---------------------------------------TCTTGCAGG---AAATCAGCTACAGATCGACACCAACGGAGCGCACACCAATCTTGGC------------------
droPer2 scaffold_2:3830513-3830884 + A------------------TGGCGACGAGGAGCAAGTGCGCCACAACGATGCCGTAAGTATTCCC-------------------TTTCGGCAATTATCCTGATTCAAGCG-A--GAACCAATAGC-CTCCTCCGCATGTT-----CAGATAGTCCGAATTC-CCTATTTTTGGAGATT--T-TAATTTCTTAA-GTGTATCC-----A------------------TGTT----CGCGTGTT-TGCTCGGCTGTAGTTGGTAGTCATGCCTGGGTATGGCATTTCGGAAACCGTAAGTGCATGATTC----------AGT-GT-T-TGC-----------------------------------------------------TTTCCC-------------TAA--TGGCTTCTGTAATATTTGCGCGCTTT------------------------------------GACCCACAA--------A----TATCCAC-----------------------------------GAATCAATCAA---AATCGAATCTTTCC-TA--C---------------------------------------TCTTGCAGG---AAATCAGCTACAGATCGACGCCAACGGAACGCACACCAATCTTGGC------------------
droAna3 scaffold_13266:4971055-4971419 + A------------------GGATGACGAGGAACAGGTGCGCCACCAAGATGCCGTAAGTATCTGT-------------------------------------TACAGTTCCC--TAATCGC----C--GTT--------GTAGCTCC-TGCATCC-GCCTCCCCATTTCTTTGCAATT--T-TAATTTCAAAA-TTATCCTC-----A------------------------------CATT-TTCCCGGCCATAGTTGGTGGCCAGTACGGGGTACGGCTACTCGGAAATCGTAAGTGCAATCATA----------TCT-GT-T-TGG-----------------------------------------------------TTTTTGAGGGTTGCAGTCCAGTCTTTGCTTTTGTATAATTCGCGCTTAAC---A-------------------------------CGTGT-------------------GT-----CCTTGTT------TT----------------------GAAAAGAA---AAACTAACTATTTC-TA--T---------------------------------------TTCTGCAGG---AGATCAGCTACAGATCACCGCCCACCGAGCGCACTCCGATCCTCTCCCGTCCACAAC---AGCC
droBip1 scf7180000395751:780907-781259 + A------------------CGACGACGAGGAACAGGTGCGCCACCAAGATGCGGTAAGTATCGGT-------------------------------------TCCAGTTC-T--CGATC----------CT-GGCACTCTTAGCTCCT-GCTTCC-GCGCCCCCATT-CTTTGCAATT--T-TAATCCCCAAA-TTATCCTC-----G------------------------------AATT-CTCCCGGCCGTAGTGTGTGGTCAGTACGGGGCACGGCTACTCGGAAATCGTAAGTGCTATCATA----------TCT-GT-T-TGG-----------------------------------------------------TTTTTGGAGGTTGCTGTCCAGTCCCTGCTTTTGTAATATTCGCGCTTCCACACC-------------------------------TGCCC--------------------------CT-GGGTT-----TT----------------------GGAAAGAA---AATCTCACTTGTTTCTG--T---------------------------------------TCCTACAGG---AGATCAACTACCGATCACCGCCCACCGAGCGCACTCCCATCCTGGC------------------
droKik1 scf7180000302682:51931-52291 - ATCAT---GG---------GGATGATGAAGAGCAAATACGACACAATGATGCTGTGAGTATGAAGGGT----------------------------------AGCAGTGC-T--C---CTATGGCGCTCTTTTGTAT----TA--------------------TTTTATGTTGCTGTT--G-TGATTTCTTAA-CTAAACTA-----A------------------------------CGTTTTGCTCGGCCTTAGTGTGTGGTCAGTTTGGGTTACGGCTCTTCGGAAACTGTAAGTGCATGAAAT-CGTGGAATCTCTCAG-CTTGC--------------------------------------------------------------TTTGTCGATTATTTATGGCTTTTGTACATTTGGCGCTTTGAT--A-------------------------------TAGCT-ATAA--------A----TGCTTATTTT-TTAG------GG----------------------TAAATGAG---TAACAAAATTTT-G-TAC-T---------------------------------------TTTTGCAGG---AAATCAACTACAGATCGGCACCCACCGAACGCACTCCCATTCTGGC------------------
droFic1 scf7180000453811:98007-98339 - A------------------GGACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGT-------------------------------------TTCCGTTT-T--TAATTGA----T--GTTCCGCATGCGG------------CC-GTCTTCCCATTATGCTGGGATT--T-TAATTTCTAAG----AAA----------------------------------------CT-TGCTCGGCCGTAGTATGTAGTCAATTTGGGGTACGACTCTTCGGAAACCGTAAGTGCATGACTT----------TCT-GT-T-TGC-----------------------------------------------------TTTTTACGTTGTGCTGGTCAGT--TCGCTTGTGTAAATATTGCGCTTAGC---A-------------------------------TGGAT--------------------------TT-TCCC------TC----------------------AAAACGGA---ACACTTATTTGTCT-TA--C---------------------------------------ATTTTTAGG---AAATCAATTATAGATCGGTGCCCACCGAGCGCACTCCAATCCTGGC------------------
droEle1 scf7180000491232:205579-205927 - A------------------GGACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGT-------------------------------------TGCAATTC-T--TGATTGA----T--GTTCCGCATGCAGCGT--------------------ATTATGTTGCAACTATA-TAATTTCTAAA-ACGTAC----------------------------------------AT-TGCTCGGCCGTAGTGTGTGGTCAGTTTGGGGTACGACTCTTCCGAAACCGTAAGTGCATGACAG----------TCT-GT-T-TGC-----------------------------------------------------TTTTCACGGTGTGTTGGCCACT--CCGCTTGTGTACATTTCGCGCTTTTGC--C-------------------------------CAGTC--------------------------CC-CAAT------TT----------------------GCAACAAA---AGACTTATTTTA--------ATTTCACTA------------------------------TTTTGTAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCAATCCTCACGCGTTCCCAGCCA-----
droRho1 scf7180000780265:201167-201492 - -------------------GGACGACGAAGAGCAAGTGCGCCACAACGATGCCGTAAGTATCAGT-------------------------------------TTCAGTTT-T--TGAAAAA----T--ATTCCGCATGCGGCGT--------------------ATTATATAGCGACT--A-TAATTTCTAAA-ACGTAC----------------------------------------TT-TGCTTGGCCGTAGTTTGTGGTCAGTTTTGGGTACGACTCTTCGGAAACCGTAAGTGCATGACTG----------TCT-TT-T-TGC-----------------------------------------------------TTTTCACGTTGTGTTGGCCAGT--TCGCTTGTGTAAATTTCGCGCTTTCC------------------------------------GACC--------------------------CT-TGAC------TT----------------------CAAACGAA---AGTCTCATTTGTTT-AA--C---------------------------------------TTTTGCAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCTATCCTCAC------------------
droBia1 scf7180000302143:1237128-1237478 - ACC----------------GGATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGT-------------------------------------TCCAGTTT-C--TGATTGG----T--GTTCCGCATGCGAAGTACATTACACTCGGTCTCCCCATTATGTTCCGCTT--T-TGATTTCAAAA-ACGTAC----------------------------------------TT-TGCTCGGCGGTAGTTTGTGGTCAAATTGGGGTACGACTCTTCGGAAACCGTAAGTGCATGATTG----------TAT-GT-T-TGC-----------------------------------------------------TTGTCTAGTTCTGTTGGCCACT--TCGCTTGTGTAAATCTCGCGCTTTGC---T-------------------------------CGGCT--------------------------CT-CAAT------TT----------------------TAAGTAGA---AGGCTCATTTGACA-CA--A---------------------------------------TTTTGCAGG---AAATCAACTATAGGCCGACGCCCACCGAACGCACACCAATTCTTCC------------------
droTak1 scf7180000415722:53879-54218 + A------------------GGACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAAT-------------------------------------TCCACTTTTC-CACATTGA----T--GTTCCGCATGCGAAGTACATTACACTCGGTCTCCCCATTATGTTGCGATT--T-TGATTTCTAAA-ACGTAC----------------------------------------TT-TGCTCGGCGGTAGTTTGTGGTCAGTTTGGGGTACGAGTCGCCGGAAACCGTAAGTGCATGACTT-----------------------------------------------------------------------------TCCTTCTTGTGTTGGCCAGT--TCGCTTGTGTAAATTTCGCGCTTTTC---T-------------------------------CGTCT--------------------------CT-CAAT------TG----------------------TAAATAGA---ATACTGATTTGTCT-CA--T---------------------------------------GCTTGCAGG---AAATCAACTACAGATCGGCGCCCACCGAGCGCACTCCAATCCTTGC------------------
droEug1 scf7180000409474:771154-771524 - ACGAGTCCGATGACGAACAGGATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATTACT-------------------------------------TGCAGTTTTTATTTATTGA----T--GTTCTGCGTGCGGTGTATATTACCTATGGTCTCTCCATTATGTTGCGATT--T-TGATTTCTAAA-ACGTAC----------------------------------------TT-TGCTCGGTCGTAGTTTGTGGTCAAAATGGGGTACGACTCTTCGGAAACCGTAAGTGCATGAATA----------TAT-GT-T-TGC-----------------------------------------------------TTTTCTCGTTGTGTTGGCCAAT-ATTGCTTGTGTACATTTTGCGCTGTTC---T-------------------------------TTGCC--------------------------CT-TGGT------TT----------------------TAAATAGA---AAGCTCATGTGTTT-CT--C---------------------------------------TTTTGCAGG---AAATCAACTACAGATCGGCGCCCACCGAGCGTACTCCAATCCTTTC------------------
dm3 chr2R:17171582-17171933 + A------------------GGACGACGAGGAGCAGGTGCGCCATAACGATGCGGTAAGTATCAGA-------------------------------------TTCAGATTTT--TCATTGA----T--GTTCCGCATGCGATGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGATTTCAAAA-ACGTAC----------------------------------------TT-TGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGAAACTTCGAGAACTGTAAGTGCATGACTA----------TTT-CC-A-TGG-----------------------------------------------------TTTTCTTGTTATGTCTGCCATT-TTTGCTTATGTAAATCTTGCGCTTTGC---A-------------------------------CGCCA--------------------------CT-CCAT------TT----------------------TAAATAGT---TTAAAAATTCGTCT-TATTT---------------------------------------TATTTTAGG---AAATCAACTATAGATCTGCTCCCACCGAACGTACTCCAATCCTTCC------------------
droSim2 2r:17726022-17726371 + dsi_29037 A------------------GGACGACGAGGAGCAAGTGCGCCACAACGATGCGGTAAGTATCAGA-------------------------------------TTCAGGTTTT--TTATTGA----T--GTTCCGCATGCGAAGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGAATTCAAAA-ACGTAC----------------------------------------TT-TGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGACACTTCGAGAACTGTAAGTGCATGACTA----------TTT-CT-A-TGG-----------------------------------------------------TTTCCATCTTATGTCTGCCATT--TTGCTTGTGTAAATCTTGCGCTTTGA---A-------------------------------TGACA--------------------------CT-CAAT------AT----------------------TAAATAGT---TAAATAATTCGTCT-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGCTCCCACCGAGCGTACTCCAATCCTTCC------------------
droSec2 scaffold_9:501425-501785 + A------------------GGACGACGAGGAGCAGGTGCGCCACAACGATGCGGTAAGTATCAGA-------------------------------------TTCAGGTTTT--TTATTGA----T--GTTCCGCATGCGAAGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGAATTAAAAA-ACGTAC----------------------------------------TT-TGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGACACTTGGAGAACTGTAAGTGCATGACTA----------TTT-CT-A-TGG-----------------------------------------------------TTTCCTTCTTATGTCTGCCATT--TTGCTTGTGTAAATCTTGCGCTTTGA---A-------------------------------TGACA--------------------------CT-CCAT------TT----------------------TAAATAGT---TAAATAAATGGACA-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGTTCCCACCGAGCGTACTCCAATCCTTCCACGATCTCAAC-------
droYak3 2R:12016427-12016790 - A------------------GGATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGA-------------------------------------TTCAGGCT-T--TTATTGA----T--GTTCCGCATGCGAAGTACATTACACCCGGTCTCCCCATTATGTTGCAATT--A-TGATTTCTAAA-ACTTAC----------------------------------------TT-TGCACGGCGTTAGTATGTGATCAATTTTGGGTACGACACTTCGAAAACTGTAAGTGCACGACTA----------TAT-GT-T-TGG-----------------------------------------------------CTTCCTTGTTATGTCTGCCAGT--TTGCTTGTGTAAATTTCGCGCTATTTA--A-------------------------------CACTT--------------------------CT-CGAT------GT----------------------TAAATGGC---TTAATAATTCGTCG-TAT-T---------------------------------------CATTTTAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCAATCCTTCCACGTTCTCAACCA-----
droEre2 scaffold_4845:11315607-11315973 + A------------------GGATGACGAGGAGCAGGGGCGACACAACGATGCCGTAAGTATCAGA-------------------------------------TTCAGGTT-T--TTATTGA----T--GTTCCGCATGCGAAGTACATTACACCCGGTCTCCCCATTATGTTGCAAAT--T-TGATTTCTAAA-ACGTAC----------------------------------------TT-TGCACGGCGTTAGTATGTGGTCAATTTTGGGTACGGCACTTCGAAAACTGTAAGTGCAATACTA----------TAT-GT-T-TGG-----------------------------------------------------CTTCC-TGTTCTGTCTGCCAGT--TTGCTTGTGTAAATTTCGCGCTTTGC---C-------------------------------CGCTT--------------------------CT-CGCT------TT----------------------TAAATGGT---TTACTAATTCGTCG-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGCGCCCACCGAGCGCACTCCAATCCTTTCACGTTCTCAACCAGAGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACGAC---GATGATGCCGACAATGATGAGGAGCAAGCGCGTCGCAGCGAAGCTGTGAGTATACCTGGCTTTTGTGCTCTTCCAAT-----------------TTCAGCTA------------------------------------------------------------TTGCATTT--TATGATTTCG-----------------------CTCATCTAAT--ATAATTCGA---------CGCACGGC--CAGTTTTATGCACAGTCCTTTTATGCCGTACCGCAAACCGTAAGTGCATGTCTATCG-------AG-------TGC--------------TATGT----------------------------------CCTT-----TCTAATCGCTAGT-------TTTGTACGTGTGCCGCTTCTTAACT-GCTTACTGTATTTGCTGTAGAATATATATA-----TATAAATCTGTGTATATAT--------------G-------------------------------------------------TTA--------ATTATATTATTTTGATACGCTCATTAACAATTTTATTATCCACGCAGGATCAGGTCAGCTTTCGTTCACCGGCCACTGAGCGTACGCCCATTCTGGC------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................TACCTGGCTTTTGTGCTCTTCCAAT-----------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCGTTCACCGGCCAC.......................................1811.001100000
...............................GCAAGCGCGTCGCAGCGAAGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGAGCGTACGCCCATTCTGG...................2411.001000001
............................GGAGCAAGCGCGTCGCAGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCGTTCACCGGCCACTGAGCGT................................2611.001100000
............ATGCCGACAATGATGAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...............................GCAAGCGCGTCGCAGCGAAGCTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.......................GATGAGGAGCAAGCGCGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCGTACGCCCATTCTGG...................2111.001000001
............................................................TACCTGGCTTTTGTGCTCTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
................................CAAGCGCGTCGCAGCGAAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droVir3
ATGAC---GATGA------TGACGATGAGGAACAGGCGCGTCACACCGAAGCCGTAAGTATTTAATG--------TTCT--CGCTTTCAGCAATT--------------------------------------------GTTG--------------------------CTTGCATTT--T-TGACTTTTTAT-TTAAATAAAATACACA---CTCATCTCAA--ATAATTTGCCG----TA-TGC-CTGC-GCAGTTTTATGCCCAGTCCGTTTATGCCGCCCAACAAACCGTAAGTGCATGCATC----------CCACAT-T-TGT-----------------------------------------------------CTTT-TCCATGTGTCG-----T--ACGCTTCTGTGTTTGTTGCGCCTCTT---CAGCT--------------------AATTCTT-----TATAAATCTGTAT-TATAT--------------GTCCGATTCGCTTTGTGCTT-CTGCTCATA-------TTGATTACATACATTT----T--T---------------------------------------CCCTGCAGGATCAGGTTAGCTATCGCCCAGCGCCCACCGAACGCACCCCCATCCTGTC------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TTGATTACATACATTT----T--T---------------------------------------CCCTGCAG....................................................................2712.002000000000000000000000000000020000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCATGTGTCG-----T--ACGCTTCT...........................................................................................................................................................................................................................................................................2012.002000000200000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CG-----T--ACGCTTCTGTGTTTGTTG.................................................................................................................................................................................................................................................................2112.002000001000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTATCGCCCAGCGCCCA........................................2112.002000000100000000000000000000100000000000000000000000000000000000
....C---GATGA------TGACGATGAGGAACAGGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAT-TATAT--------------GTCCGATTCGCT....................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGCCCACCGAACGCACCC............................2211.001000000000000000100000000000000000000000000000000000000000000000
.......................GATGAGGAACAGGCGCGTCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTT----T--T---------------------------------------CCCTGCAGGATCAG..............................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................T-TCCATGTGTCG-----T--ACGCTTCT...........................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
....C---GATGA------TGACGATGAGGAACAGGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
..........TGA------TGACGATGAGGAACAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTATCGCCCAGCGCCC.........................................2111.001000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTGCGCCTCTT---CA....................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
.................................................................TG--------TTCT--CGCTTTCAGCAATT--------------------------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................T-TGT-----------------------------------------------------CTTT-TCCATGTGTCG-----T--A..................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................CGCTTTCAGCAATT--------------------------------------------GTTG--------------------------CTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...AC---GATGA------TGACGATGAGGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGAACGCACCCCCATCCT.....................2111.001000000000000000000000000000010000000000000000000000000000000000
...........GA------TGACGATGAGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AACAAACCGTAAGTGCATGCA........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATCGCCCAGCGCCCACCGAACG.................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................TGACGATGAGGAACAGGCGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTTATGCCGCCCAACAAACCG....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
....C---GATGA------TGACGATGAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.502000000000001010000000000000000000000000000000000000000000000000
.TGAC---GATGA------TGACGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.131000000000000000000000000000001000000000000000000000000000000000
droGri2
ACGGT---GATGA------TGATGATGAGGAACAGGCGCGCCACAGCGAAGCCGTGAGTATTTCT---------------------------------------------------ACTCA----T--TTACCCAATCCA---------------------------GTTTTGCATTT--T-TGATTTCTTCAACTAAATTAAACACACAATACTCATTCAAACCAAAATTTGG----CGTA-TGCTCG--CGCAGTTTTTTAGCCATTCCGGTTATGCTGAATATCAAACCGTAAGTGCATGCATC-C--------AGC-AAAT-TGCTTTTTCCCGTGTGTTATACGCTCTCCTCTCTCTTTCTCTCTCTCTCTATTTGTGTTGTGTGGTATCCTAGACAGT--TCTCTTTTCTACAAATATTAATATAT---A-------------------------------TGTAT-------------------AT--------CCAT------TTAATATTGACCTAGTTACTTATA-------TT--AATTGTATATTTCT-A--------------------------------------------ACTGCAGGATCAAGTCAGCTATAGACCCTTGCCCACTGAGCGCACCCCCATCCTGAC------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACAAT---GA---------CAATGATGAGGAGGAAGCACGTCATAATGCAAGTGTAAGTAACTTTAA-----------------------------------CTTATATT-T--TTAGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTCAGTTAATAC------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................CAATGATGAGGAGGAAGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...AT---GA---------CAATGATGAGGAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
....................AATGATGAGGAGGAAGCACGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
dp5
A------------------TGGCGACGAGGAGCAAGTGCGCCACAACGATGCCGTAAGTATTCCC-------------------TTTCGGCAATTATGCTGATTCAAGCG-A--GAACCAATGGC-CTCCTCCGCATGTT-----CAGATAGTCCGAATTC-CCTATTTTTGGAGAAT--T-TAATTTCTTAA-GTGTATCC-----A------------------TGTT----CGCGTGTT-TGCTCGGCTGTAGTTGGTAGTCATGCCTGGGTATGGCATTTCGGAAACCGTAAGTGCATGATTC----------AGT-GT-T-TGC-----------------------------------------------------TTTCCC-------------TAA--TGGCTTCTGTAATATTTGCGCGCTTT------------------------------------GACCCACGA--------A----TATCCAC-----------------------------------GAATCAATCAAT--AATCGAATCTTTCC-TA--C---------------------------------------TCTTGCAGG---AAATCAGCTACAGATCGACACCAACGGAGCGCACACCAATCTTGGC------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................GCATTTCGGAAACCGTAAGTG..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..........................GAGGAGCAAGTGCGCCACAACGATGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCTACAGATCGACACCAACGGA....................................2611.0010100000000
.......................................................AAGTATTCCC-------------------TTTCGGCAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACGGAGCGCACACCAA.........................2111.0010100000000
.......................GACGAGGAGCAAGTGCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGCGCACACCAATCTTG....................2111.0010100000000
................................................................................................................................................................................................................................................................................GGTATGGCATTTCGGAAACC.....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
droPer2
A------------------TGGCGACGAGGAGCAAGTGCGCCACAACGATGCCGTAAGTATTCCC-------------------TTTCGGCAATTATCCTGATTCAAGCG-A--GAACCAATAGC-CTCCTCCGCATGTT-----CAGATAGTCCGAATTC-CCTATTTTTGGAGATT--T-TAATTTCTTAA-GTGTATCC-----A------------------TGTT----CGCGTGTT-TGCTCGGCTGTAGTTGGTAGTCATGCCTGGGTATGGCATTTCGGAAACCGTAAGTGCATGATTC----------AGT-GT-T-TGC-----------------------------------------------------TTTCCC-------------TAA--TGGCTTCTGTAATATTTGCGCGCTTT------------------------------------GACCCACAA--------A----TATCCAC-----------------------------------GAATCAATCAA---AATCGAATCTTTCC-TA--C---------------------------------------TCTTGCAGG---AAATCAGCTACAGATCGACGCCAACGGAACGCACACCAATCTTGGC------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGATCGACGCCAACG......................................1912.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTACAGATCGACGCC..........................................1812.002200000
.....................GCGACGAGGAGCAAGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.................................AAGTGCGCCACAACGATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
droAna3
A------------------GGATGACGAGGAACAGGTGCGCCACCAAGATGCCGTAAGTATCTGT-------------------------------------TACAGTTCCC--TAATCGC----C--GTT--------GTAGCTCC-TGCATCC-GCCTCCCCATTTCTTTGCAATT--T-TAATTTCAAAA-TTATCCTC-----A------------------------------CATT-TTCCCGGCCATAGTTGGTGGCCAGTACGGGGTACGGCTACTCGGAAATCGTAAGTGCAATCATA----------TCT-GT-T-TGG-----------------------------------------------------TTTTTGAGGGTTGCAGTCCAGTCTTTGCTTTTGTATAATTCGCGCTTAAC---A-------------------------------CGTGT-------------------GT-----CCTTGTT------TT----------------------GAAAAGAA---AAACTAACTATTTC-TA--T---------------------------------------TTCTGCAGG---AGATCAGCTACAGATCACCGCCCACCGAGCGCACTCCGATCCTCTCCCGTCCACAAC---AGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................TGACGAGGAACAGGTGCGCCACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...............................ACAGGTGCGCCACCAAGATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTACAGATCACCGCCCACCGAGCGCAC..............................2911.001100000
..................................................................................................................................T--------GTAGCTCC-TGCATCC-GCCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................TGACGAGGAACAGGTGCGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCGCCCACCGAGCGCACTC............................2411.001010000
droBip1
A------------------CGACGACGAGGAACAGGTGCGCCACCAAGATGCGGTAAGTATCGGT-------------------------------------TCCAGTTC-T--CGATC----------CT-GGCACTCTTAGCTCCT-GCTTCC-GCGCCCCCATT-CTTTGCAATT--T-TAATCCCCAAA-TTATCCTC-----G------------------------------AATT-CTCCCGGCCGTAGTGTGTGGTCAGTACGGGGCACGGCTACTCGGAAATCGTAAGTGCTATCATA----------TCT-GT-T-TGG-----------------------------------------------------TTTTTGGAGGTTGCTGTCCAGTCCCTGCTTTTGTAATATTCGCGCTTCCACACC-------------------------------TGCCC--------------------------CT-GGGTT-----TT----------------------GGAAAGAA---AATCTCACTTGTTTCTG--T---------------------------------------TCCTACAGG---AGATCAACTACCGATCACCGCCCACCGAGCGCACTCCCATCCTGGC------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATCAT---GG---------GGATGATGAAGAGCAAATACGACACAATGATGCTGTGAGTATGAAGGGT----------------------------------AGCAGTGC-T--C---CTATGGCGCTCTTTTGTAT----TA--------------------TTTTATGTTGCTGTT--G-TGATTTCTTAA-CTAAACTA-----A------------------------------CGTTTTGCTCGGCCTTAGTGTGTGGTCAGTTTGGGTTACGGCTCTTCGGAAACTGTAAGTGCATGAAAT-CGTGGAATCTCTCAG-CTTGC--------------------------------------------------------------TTTGTCGATTATTTATGGCTTTTGTACATTTGGCGCTTTGAT--A-------------------------------TAGCT-ATAA--------A----TGCTTATTTT-TTAG------GG----------------------TAAATGAG---TAACAAAATTTT-G-TAC-T---------------------------------------TTTTGCAGG---AAATCAACTACAGATCGGCACCCACCGAACGCACTCCCATTCTGGC------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A------------------GGACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGT-------------------------------------TTCCGTTT-T--TAATTGA----T--GTTCCGCATGCGG------------CC-GTCTTCCCATTATGCTGGGATT--T-TAATTTCTAAG----AAA----------------------------------------CT-TGCTCGGCCGTAGTATGTAGTCAATTTGGGGTACGACTCTTCGGAAACCGTAAGTGCATGACTT----------TCT-GT-T-TGC-----------------------------------------------------TTTTTACGTTGTGCTGGTCAGT--TCGCTTGTGTAAATATTGCGCTTAGC---A-------------------------------TGGAT--------------------------TT-TCCC------TC----------------------AAAACGGA---ACACTTATTTGTCT-TA--C---------------------------------------ATTTTTAGG---AAATCAATTATAGATCGGTGCCCACCGAGCGCACTCCAATCCTGGC------------------SizeHit CountTotal NormTotal
No Reads
droEle1
A------------------GGACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGT-------------------------------------TGCAATTC-T--TGATTGA----T--GTTCCGCATGCAGCGT--------------------ATTATGTTGCAACTATA-TAATTTCTAAA-ACGTAC----------------------------------------AT-TGCTCGGCCGTAGTGTGTGGTCAGTTTGGGGTACGACTCTTCCGAAACCGTAAGTGCATGACAG----------TCT-GT-T-TGC-----------------------------------------------------TTTTCACGGTGTGTTGGCCACT--CCGCTTGTGTACATTTCGCGCTTTTGC--C-------------------------------CAGTC--------------------------CC-CAAT------TT----------------------GCAACAAA---AGACTTATTTTA--------ATTTCACTA------------------------------TTTTGTAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCAATCCTCACGCGTTCCCAGCCA-----SizeHit CountTotal NormTotal
No Reads
droRho1
-------------------GGACGACGAAGAGCAAGTGCGCCACAACGATGCCGTAAGTATCAGT-------------------------------------TTCAGTTT-T--TGAAAAA----T--ATTCCGCATGCGGCGT--------------------ATTATATAGCGACT--A-TAATTTCTAAA-ACGTAC----------------------------------------TT-TGCTTGGCCGTAGTTTGTGGTCAGTTTTGGGTACGACTCTTCGGAAACCGTAAGTGCATGACTG----------TCT-TT-T-TGC-----------------------------------------------------TTTTCACGTTGTGTTGGCCAGT--TCGCTTGTGTAAATTTCGCGCTTTCC------------------------------------GACC--------------------------CT-TGAC------TT----------------------CAAACGAA---AGTCTCATTTGTTT-AA--C---------------------------------------TTTTGCAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCTATCCTCAC------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACC----------------GGATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGT-------------------------------------TCCAGTTT-C--TGATTGG----T--GTTCCGCATGCGAAGTACATTACACTCGGTCTCCCCATTATGTTCCGCTT--T-TGATTTCAAAA-ACGTAC----------------------------------------TT-TGCTCGGCGGTAGTTTGTGGTCAAATTGGGGTACGACTCTTCGGAAACCGTAAGTGCATGATTG----------TAT-GT-T-TGC-----------------------------------------------------TTGTCTAGTTCTGTTGGCCACT--TCGCTTGTGTAAATCTCGCGCTTTGC---T-------------------------------CGGCT--------------------------CT-CAAT------TT----------------------TAAGTAGA---AGGCTCATTTGACA-CA--A---------------------------------------TTTTGCAGG---AAATCAACTATAGGCCGACGCCCACCGAACGCACACCAATTCTTCC------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A------------------GGACGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAAT-------------------------------------TCCACTTTTC-CACATTGA----T--GTTCCGCATGCGAAGTACATTACACTCGGTCTCCCCATTATGTTGCGATT--T-TGATTTCTAAA-ACGTAC----------------------------------------TT-TGCTCGGCGGTAGTTTGTGGTCAGTTTGGGGTACGAGTCGCCGGAAACCGTAAGTGCATGACTT-----------------------------------------------------------------------------TCCTTCTTGTGTTGGCCAGT--TCGCTTGTGTAAATTTCGCGCTTTTC---T-------------------------------CGTCT--------------------------CT-CAAT------TG----------------------TAAATAGA---ATACTGATTTGTCT-CA--T---------------------------------------GCTTGCAGG---AAATCAACTACAGATCGGCGCCCACCGAGCGCACTCCAATCCTTGC------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACGAGTCCGATGACGAACAGGATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATTACT-------------------------------------TGCAGTTTTTATTTATTGA----T--GTTCTGCGTGCGGTGTATATTACCTATGGTCTCTCCATTATGTTGCGATT--T-TGATTTCTAAA-ACGTAC----------------------------------------TT-TGCTCGGTCGTAGTTTGTGGTCAAAATGGGGTACGACTCTTCGGAAACCGTAAGTGCATGAATA----------TAT-GT-T-TGC-----------------------------------------------------TTTTCTCGTTGTGTTGGCCAAT-ATTGCTTGTGTACATTTTGCGCTGTTC---T-------------------------------TTGCC--------------------------CT-TGGT------TT----------------------TAAATAGA---AAGCTCATGTGTTT-CT--C---------------------------------------TTTTGCAGG---AAATCAACTACAGATCGGCGCCCACCGAGCGTACTCCAATCCTTTC------------------SizeHit CountTotal NormTotal
No Reads
dm3
A------------------GGACGACGAGGAGCAGGTGCGCCATAACGATGCGGTAAGTATCAGA-------------------------------------TTCAGATTTT--TCATTGA----T--GTTCCGCATGCGATGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGATTTCAAAA-ACGTAC----------------------------------------TT-TGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGAAACTTCGAGAACTGTAAGTGCATGACTA----------TTT-CC-A-TGG-----------------------------------------------------TTTTCTTGTTATGTCTGCCATT-TTTGCTTATGTAAATCTTGCGCTTTGC---A-------------------------------CGCCA--------------------------CT-CCAT------TT----------------------TAAATAGT---TTAAAAATTCGTCT-TATTT---------------------------------------TATTTTAGG---AAATCAACTATAGATCTGCTCCCACCGAACGTACTCCAATCCTTCC------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................GGACGACGAGGAGCAGGTGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................GTGCGCCATAACGATGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGGAGCAGGTGCGCCATAACGATGCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
A------------------GGACGACGAGGAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATAGATCTGCTCCCACCGAACGT................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TGG-----------------------------------------------------TTTTCTTGTTATGTCTG..........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCCCACCGAACGTACTCCAA.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GGACGACGAGGAGCAGGTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCTCCCACCGAACGTAC..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................GAGGAGCAGGTGCGCCATAACGATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCACCGAACGTACTCCA..........................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGCGCCATAACGATGCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GGACGACGAGGAGCAGGTGCGCCATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................GGACGACGAGGAGCAGGTGCGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................GACGACGAGGAGCAGGTGCGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGCAGGTGCGCCATAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGAACGTACTCCAATCC......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GTGCGCCATAACGATGCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
A------------------GGACGACGAGGAGCAGGTGCGCCATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...................GGACGACGAGGAGCAGGTGCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................AGGTGCGCCATAACGATGCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
....................GACGACGAGGAGCAGGTGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................GTAC----------------------------------------TT-TGCTCGGCGTTAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................GCAGGTGCGCCATAACGATGCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TT-TGCTCGGCGTTAGTGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TGCGATGTACATTACACGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------------TAAATAGT---TTAAAAA................................................................................................................................1740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A------------------GGACGACGAGGAGCAAGTGCGCCACAACGATGCGGTAAGTATCAGA-------------------------------------TTCAGGTTTT--TTATTGA----T--GTTCCGCATGCGAAGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGAATTCAAAA-ACGTAC----------------------------------------TT-TGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGACACTTCGAGAACTGTAAGTGCATGACTA----------TTT-CT-A-TGG-----------------------------------------------------TTTCCATCTTATGTCTGCCATT--TTGCTTGTGTAAATCTTGCGCTTTGA---A-------------------------------TGACA--------------------------CT-CAAT------AT----------------------TAAATAGT---TAAATAATTCGTCT-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGCTCCCACCGAGCGTACTCCAATCCTTCC------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................AATTCAAAA-ACGTAC----------------------------------------TT-TGCTCGGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
........................................................................................................................................................................................................................................................................................ACTTCGAGAACTGTAAGTGCA............................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.......................GACGAGGAGCAAGTGCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
droSec2
A------------------GGACGACGAGGAGCAGGTGCGCCACAACGATGCGGTAAGTATCAGA-------------------------------------TTCAGGTTTT--TTATTGA----T--GTTCCGCATGCGAAGTACATTACACCCGGTCTC-CCAATATGTTGCAATT--A-TGAATTAAAAA-ACGTAC----------------------------------------TT-TGCTCGGCGTTAGTGTGTGATCAGTTTTGGGTACGACACTTGGAGAACTGTAAGTGCATGACTA----------TTT-CT-A-TGG-----------------------------------------------------TTTCCTTCTTATGTCTGCCATT--TTGCTTGTGTAAATCTTGCGCTTTGA---A-------------------------------TGACA--------------------------CT-CCAT------TT----------------------TAAATAGT---TAAATAAATGGACA-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGTTCCCACCGAGCGTACTCCAATCCTTCCACGATCTCAAC-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCCCACCGAGCGTACTCC...........................2111.0010010
................................CAGGTGCGCCACAACGATGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...........................AGGAGCAGGTGCGCCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
A------------------GGATGACGAGGAGCAGGTGCGCCACAACGATGCCGTAAGTATCAGA-------------------------------------TTCAGGCT-T--TTATTGA----T--GTTCCGCATGCGAAGTACATTACACCCGGTCTCCCCATTATGTTGCAATT--A-TGATTTCTAAA-ACTTAC----------------------------------------TT-TGCACGGCGTTAGTATGTGATCAATTTTGGGTACGACACTTCGAAAACTGTAAGTGCACGACTA----------TAT-GT-T-TGG-----------------------------------------------------CTTCCTTGTTATGTCTGCCAGT--TTGCTTGTGTAAATTTCGCGCTATTTA--A-------------------------------CACTT--------------------------CT-CGAT------GT----------------------TAAATGGC---TTAATAATTCGTCG-TAT-T---------------------------------------CATTTTAGG---AAATCAACTATAGATCGGCGCCCACCGAGCGTACTCCAATCCTTCCACGTTCTCAACCA-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCGGCGCCCACCGAGCGTACTCC...........................26110.0010000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCCCACCGAGCGTACTCCAATCC......................2611.00101000000000
......................TGACGAGGAGCAGGTGCGCCACAACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
A------------------GGATGACGAGGAGCAGGTGCGCCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAACTATAGATCGGCGC...........................................2011.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCCCACCGAGCGTACTCCAATCC......................2811.00101000000000
.....................ATGACGAGGAGCAGGTGCGCCACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATTCGTCG-TAT-T---------------------------------------CATTTTAGA---................................................................2511.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------CACTT--------------------------CT-CGAT------GT----------------------TAAATGGC---.......................................................................................................................................2211.00100100000000
............................................................................................................................................................................................................................................................................TTTGGGTACGACACTTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
......................................................................................................................................................................................................................................................................ATCAATTTTGGGTACGACACT..............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEre2
A------------------GGATGACGAGGAGCAGGGGCGACACAACGATGCCGTAAGTATCAGA-------------------------------------TTCAGGTT-T--TTATTGA----T--GTTCCGCATGCGAAGTACATTACACCCGGTCTCCCCATTATGTTGCAAAT--T-TGATTTCTAAA-ACGTAC----------------------------------------TT-TGCACGGCGTTAGTATGTGGTCAATTTTGGGTACGGCACTTCGAAAACTGTAAGTGCAATACTA----------TAT-GT-T-TGG-----------------------------------------------------CTTCC-TGTTCTGTCTGCCAGT--TTGCTTGTGTAAATTTCGCGCTTTGC---C-------------------------------CGCTT--------------------------CT-CGCT------TT----------------------TAAATGGT---TTACTAATTCGTCG-TAT-T---------------------------------------TATTTTAGG---AAATTAACTATAGATCGGCGCCCACCGAGCGCACTCCAATCCTTTCACGTTCTCAACCAGAGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGATCGGCGCCCACCGAGCGCAC..............................2611.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTATAGATCGGCGCCCACCG.....................................2311.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCGGCGCCCACCGAGCGCAC..............................2411.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAATCCTTTCACGTTCTCAACC......2711.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACCGAGCGCACTCCA..........................1911.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCCAATCCTTTCACGTTCT...........2311.0010000100
.......................GACGAGGAGCAGGGGCGACACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGATCGGCGCCCACCGAGCGCA...............................2511.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACGTTCTCAACCAGAGG.2011.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACGTTCTCAACCAGAGGC2111.0011000000
................................................................................................................................................................................................................................................TT-TGCACGGCGTTAGTATGTGGTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCGGCGCCCACCGAGCGCACTCC...........................2711.0011000000

Generated: 05/17/2015 at 11:39 PM