dmo_1054

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GGCTGCCCCCCGCTGCCGGCAATATGCTGCATCATGTGCAGCAACATCAGCAGCAACAGCAACAGCAGCAACAACAGCAACAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCTGCCCCATTCACATGGCTACAGGTGAGTCTTGATTGTTGCCTTGTCGCTGCGTATTCCACACTGAATGCTTGCAGTCCACGCAGCTATACGGAGCATTTGGTGCGTGCCACCGACTCGCCGCGTT **************************************************************................((((.((.((.((.((................)).)).)).)).))))*************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V056 head	V049 head	M060 embryo
..............................................................................................................................................................ATTGTTGCATTCTTGCTGCGTA.......................................................................	22	3	1	60.00	60	43	14	2	1	0
..............................................................................................................................................................ATTGTTGCATTCTTGCTGCGT........................................................................	21	3	5	16.20	81	47	25	4	5	0
...............................................................................................................................................................TTGTTGCATTCTTGCTGCGTA.......................................................................	21	3	7	2.00	14	13	1	0	0	0
................................................................................................................................................................TGTTGCATTCTTGCTGCGTA.......................................................................	20	3	15	1.13	17	14	2	0	1	0
..............................................................................................................................................................ATTGTTGCATTGTTGCTGCGT........................................................................	21	2	2	0.50	1	1	0	0	0	0
..............................................................................................................................................................ATTGTTGCGTTCTTGCTGCGT........................................................................	21	3	5	0.20	1	0	1	0	0	0
................................................................GCAGCAACAACAGCAACAGC.......................................................................................................................................................................	20	0	20	0.15	3	0	0	0	0	3
.......................................................................................................ACAACAGCAGCAGCAGCAGCAGCTG...........................................................................................................................	25	0	7	0.14	1	1	0	0	0	0
.....................................................................................................CAACAACAGCAGCAGCAGCAGCAGC.............................................................................................................................	25	0	20	0.10	2	2	0	0	0	0
.............................................ATCAGCAGCAACAGCAACAGCA........................................................................................................................................................................................	22	0	17	0.06	1	0	0	0	0	1
.............................................ATCAGCAGCAACAGCAACAGC.........................................................................................................................................................................................	21	0	20	0.05	1	1	0	0	0	0
..........................................................................................AGCAGCAACAACAACAACAGC............................................................................................................................................	21	0	20	0.05	1	0	0	0	0	1
...........................................ACATCAGCAGCAACAGCAA.............................................................................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0
........................................................................................................................................ACATGGATACAGGTGATGC................................................................................................	19	3	20	0.05	1	1	0	0	0	0
....................................................................................AGCAGCAGCAGCAACAACAACAACAGCA...........................................................................................................................................	28	0	20	0.05	1	1	0	0	0	0
.....................................................................AACAACAGCAACAGCAGCA...................................................................................................................................................................	19	0	20	0.05	1	0	0	0	0	1
...................................................................GCAACAACAGCAACAGCAGCAGC.................................................................................................................................................................	23	0	20	0.05	1	1	0	0	0	0
.......................................................ACAGCAACAGCAGCAACAA.................................................................................................................................................................................	19	0	20	0.05	1	0	0	0	0	1
......................................................................ACAACAGCAACAGCAGCAGCAGCAGC...........................................................................................................................................................	26	0	20	0.05	1	1	0	0	0	0

CCGACGGGGGGCGACGGCCGTTATACGACGTAGTACACGTCGTTGTAGTCGTCGTTGTCGTTGTCGTCGTTGTTGTCGTTGTCGTCGTCGTCGTCGTTGTTGTTGTTGTCGTCGTCGTCGTCGTCGACGGGGTAAGTGTACCGATGTCCACTCAGAACTAACAACGGAACAGCGACGCATAAGGTGTGACTTACGAACGTCAGGTGCGTCGATATGCCTCGTAAACCACGCACGGTGGCTGAGCGGCGCAA *************************************************************************************************************************................((((.((.((.((.((................)).)).)).)).))))**************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V049 head	V056 head	V110 male body
..............................................................................................................................................................TAACAACGTAAGAACGACGCAT.......................................................................	22	3	1	4.00	4	4	0	0	0
........................................................................................................................TCGGCGACAGGGTGAGTGTAC..............................................................................................................	21	3	6	0.33	2	0	0	2	0
................................................................................................................................................................ACAACGTAAGAACGACGCAT.......................................................................	20	3	15	0.27	4	3	0	0	1
..............................................................................................................................................................TAACAACGTAAGAACGACGCA........................................................................	21	3	5	0.20	1	1	0	0	0
........................................................................................................................TCGGCGACGGGGTGAGTGTTC..............................................................................................................	21	3	5	0.20	1	0	1	0	0
...............................................................................................................................................................AACAACGTAAGAACGACGCAT.......................................................................	21	3	7	0.14	1	0	1	0	0
...................................................................................................................CGTCATCCTCGAAGGGGTA.....................................................................................................................	19	3	13	0.08	1	0	0	0	1
.....................................................................................................................................TGGTGTACCGATGTCCAA....................................................................................................	18	3	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:9273715-9273965 -	dmo_1054	GG--CTGCCCCCCGCTGCCG----------GCAATATG---CTGCA---TCATGTGCAGCA--------------A---CATCAGCAGCAACAG---------CAA--------------------CA---------GCAGCAA---------C-AACAGCAACAGCAGCAGC------------------------------------------------------------AGCAGCA-----------ACAACAACAAC------------AG---------------------------------------CAGCAG-------------------------------------------------------CAGCA------------GCA------------------GCTGCCCCATTCACATGGCTACAGGTGAGTCTTGA--------------------------------------------------------------------------TTGTTGC----C---------TTGTCGC---------TGC---G----T---------------------------------ATTCCAC----ACTGAAT------------------------------------------------------------GC-----TTGCAGTCCACGCAGCTATACGGAGCATTTGGTGCGTGCCAC-CGACTCGCCGCGTT
droVir3	scaffold_12875:13857622-13857866 -		GG--CTGCCGCCAGCCTCAG----------TCAACATG---CTGCA---TCAGGTGCAGCA--------------G---CATCAGGTGCAGCAGCAA-----------------------------CA---------ACAGCAA---------CA----------GCTGCAGCT------------------------------------------------------GCAGCAGCAACAGGCACAACAGC-----------------------AG---------------------------------------CAACAT-------------------------------------------------------CACCA------------GCA------------------GCTGCCGCATACGCATGGCTACAGGTGAGTCTTGG--------------------------------------------------------------------------TTT----CTGC-------------TCGC---------TGA---G----CTTCCCCCGAC------------------------------------TATAT------------------------------------------------------------GC-----TTGCAGTCCACGCAGCTATACGGAGCATTTGGTGCGTGCCAC-GGACTCGCCACGTT
droGri2	scaffold_15245:17377649-17377902 +		GG--TTGCCGCCGGCAACAA----------TCTCTATG---ATGCA---TCAGGTGCAGCA--------------A---CATCAGCAGCAGCAGCAG-----------------------------CA---------GCAACAATTGCTGCAGCA----------ACAACAACA------------------------------------------------------GCAGCTGCAACA-----------------ACAAC------AACAACAG---------------------------------------CTGCAG-------------------------------------------------------CAGCA------------ACA------------------------ACATTCACATGGCTATAGGTAAGTTTTGGG----CT----------------------------------------------------------------------------------------TTTTCACTGCTCAAGTTGA---G----CTC--CCCAAC------------------------------------TAAAT------------------------------------------------------------AC-----TTGCAGTCCACGCAGCTATGCGGATCATCTGGTGCGGGCCAC-GGACTCGCCACGTT
droWil2	scf2_1100000004513:3942665-3942960 +		GG--CTACCACCAGCAGTG----------------------ATGCA---G------CAGCAACATCA--------T---CAACAGCAGCAACAGCAG-----------------------------CAGCAACAGTCAAACCAG---------AA----------GCAACAGTT------------------------------------------------------GCAACAGCAACA-----------ACAG------C------TGCAACAG---------------------------------------CAACAA-------------------------------------------------------CAGCA------------ACA------------------ATTCTCTCAGTCACATGGCTATAGGTGAGTGAAAGG--A----------------------------AAATGAAATTCCTCTGTTTCAAACACACACACAGTGTCATGTTTGTTTTTTTC-------------TTAC---------TTT---G----TTTCT----------------------------------TT----TCTGTTT------------------------------------------------------------GTTGTTAACGCAGTCCCCGCAGCTATGCCGAACGTTTGGCCCGTGCCAC-AGACTCACCCAGAT
dp5	3:4110514-4110760 -		GG--CTGCCCCCAGCGCCAA-CTCCACCAGCC------------CC---ACTGGTGCATCATCCCCTGACACACC--------AGCAACATCATCAGC---------------------A-----------------GCACCAACCGCTTCATCA----------GCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGCAGGC-------------------------------------------GACGCAG---CA---------------------GTCCTCACAACAGCACGGGTACAGGTGAGCCCCAAA--T----------------------------AGATT----------------------------------------------------------------------------A---C----T------CACCCACAT-ACTCACTCAGTCGTTTTCTTCC--------------------------------------------------------------------------------CCAAAGTCCGCGAAGCTATGCGGACCGTCTGGTTCGGGCCAC-AGACTCGCCCAGAT
droPer2	scaffold_2:4297590-4297836 -		GG--CTGCCCCCAGCGCCAA-CTCCACCAGCC------------CC---ACTGGTGCATCATCCCCTGACACACC--------AGCAACATCATCAGC---------------------A-----------------GCACCAACCGCTACATCA----------GCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGCAGGC-------------------------------------------GACGCAG---CA---------------------GTCCTCCCAACAGCACGGGTACAGGTGAGCCCCAAA--T----------------------------AGATT----------------------------------------------------------------------------A---C----T------CACCCACAT-ACTCACTCAGTCGTTTTCTTCC--------------------------------------------------------------------------------CCAAAGTCCGCGAAGCTATGCGGACCGTCTGGTTCGGGCCAC-AGACTCGCCCAGAT
droAna3	scaffold_13117:2691866-2692112 +		TG--CAGC-A---------------------------------------GCAGCAGCAGCAGCA-----------A---CAGCAGCAGCAGCAGCAGCAGCAGTAC--------------------CA------------------GCTGC-------------------------AGCCGCACCAGTACCAG----------------CTG--CAGC---A------GCAGC-----------------------------------AGCA------------CCATCAGCA-CTACCTGCAA---CAG--CA---GCAC-------------------------------------------------CTGCAACAGC-----------------------------------------------------AACAGGTGCCGCCCGTT--C----------------------------TGATC----------------------------------------------------------------------------A---CCTCGT------CGCCGACGA-ACGGCTCCCG---GATAATACGGCAG-AGCTCCCAGCCGGAGTCGAGCAGCAC-----------------------------------------------------------------------GGCCATCTGCTGCGGCCCCC-ACT----CCGCCTA
droBip1	scf7180000396696:561838-562072 -		GC--T-GTCAGC--------------------AACATG------------------CAGCA--------------GCACCAGCAGCAGCAACAC---------CAGCAGCAGCAACATTACTATCA-----------------G---------CA----------GCA------------------------------------------------------------GCAGCAGC-----------------AACAGCAACAGCAACAGCA------------G-------------C---AGTTGGCT--C-------------------------------------------------------------------------ATAATCATAGCCACCAT--------------------------------CACATGACGCCTGC--------------------------------------------------------------------------CTA----CTACCAGCAGCAACATGCCGC---------TGT---C--------------------------------------AGTCAGCAGCAACTCACGGCTGGCAGCCAGCAACAC------------------------------------------GG-----C----------------------AACATTTCGCCCACTCCCC-TGGCC-T-CGCACT
droKik1	scf7180000302639:1611226-1611446 -		CA--TCATCAGCACCAGC--------------------------------------------------------------AGCAGCAGCAACA-----------------------------------------------------GCAGCATCA----------CCACCACCAGCAGACCCACAACGCCCAG---------ATGGCCGCCGCCCAGCAGCAGCAGCAGAACC-----------------------------------------------------------------------------------------------ATCACAACGCCGTCGCCGCCTCGAATTCTGCCTCGCAGGCGCATTCAGCAGC-----------------------------------------------------AGCGGCTGCCGCCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------GCG--------------------------------------------------------------------------------GCCAATGCCGCCAACGGAGCTGGCGCCGCTGGAGC---ACAC-AGCCTGGCCGCTGC
droFic1	scf7180000454045:361890-362123 +		GC--A-GC-A---------------------------------------GCAGCAGCAGTATCACC--------------TGCAGCAGCATCAGCAGCAGCACTAT--------------------CA------------------GCTGC-------------------------AGCAGCAACACCACTTG----------------TCG--CAGC---A------GCAGC-----------------------------------AGCA------------G-------------C---ACTTGTCG--CAGCAGCAA-------------------------------------------------------CAGC-----------------------------------------------------AGCAGGTGCCGCCCGTT--T----------------------------TGATC----------------------------------------------------------------------------A---CCTCCT------CGCCCACGA-ATGGATCCAG---GATAATACGGCAG-AGCTCGCAGCCGGAGTCAAGCAGCAC-----------------------------------------------------------------------GGCGATTTGCTGCGGACCAC-ATACC-GCCTGCGT
droEle1	scf7180000490579:729703-729961 -		AT--CCGGCCTCGCCCGCCT----------GCACCATGGTGATGTTGCCGGCACCGCAGCAGCACTTGGTGGTGC--------AGCAACAGCAA--------------------------------CAGCAACAGTCACAGCAA---------CA----------GCAGCATGT------------------------------------------------------GCAGCAGCAACATGCCCATGCCC-----------------------CG---------------------------------------CAGCAA-------------------------------------------------------CAGCA------------GCA------------------ACACTCGCCCTCGGATGGC--------------------------------------------------------------------------------------------------------------------------------GG---T----T------CATCGAATT-GCTCGC----------------------------TGCCC--------------GCGTCTCCGCCCCTGTTG--------CAACAGACCGCTACGCCG-----CC-----------------GCAGGGCGCCCAGATTGTGCCGC-CCGTCTG-CGCCCT
droRho1	scf7180000779422:18926-19196 -		CCAAT----G---TCGGC--------------ATCTCA---CC---------------CTA--------------CCTCAGTCAGCAGCAGCACCAGCAGCAGCAG--------------------CA------------GCAA------C----ATCTGCAGCAGCAACACCT------------------------------------------------------GCAGCAGCAACA-----------TCAT------C------CCCA------------------------------------------GCAGCAACCAGGTCGACAAAATTCCGCCGGCAGTTTGAACT---------------------------------------------------------------CCTCATTTATTTGGCGCGAGGCCAGTCCCAAC------------------AACTTTAAC-----------------------------------------------CTGTAC----T---------CC---------------AG---T----T------C---------------------GGTGTCTTCCTC----GCTGAAT------------------------------------------------------------GC-------GACGCCTGCGCAAAGGTACTCCCTAACTGGAGCGGGAGGA-GGATCGCCCTCCAT
droBia1	scf7180000302035:428200-428478 -		CG--CCGCCTATCAGGCCATG-----------CAGATG---CACCA---GCAGCAGCAGCA--------------G---CATCAGCAG--------------------------------------CAGCAACAACAACACCAG---------G----------------------CGGCCGTCTTCCACCATCAGGTTGCGACCATTGCCGCCCAGCAGCAGCAACAGCAGCAGCAACAGGCGCAAGTGC-----AGCATC------------AG---------------------------------------CAGCAG---------------CT-------------------------------------------GCAGCAG---CAGTTCCACTACCAGGCCCAGGCCCAAGCCCAGGCGCAGG--------------CCAT-----------------------------------------------GCTGCAGACGT-------------------------------------------------------------------------------------------------------------ACATGCAGCT---------------------------------------------------------------------------GCAGGTGAACAGTGCAGTGGGTGTG-GCCACCGCCCCTGCCACGCC
droTak1	scf7180000414560:5259-5455 +		GC--T-GC-ACCAGCAACAA-CAACAGCAGAC------------TC---AC----------------------------------------------------CAACAGCAGCAATCTCAC-----CA----------------------------------ACAACAACAGCA------------------------------------------------------GCAAA--------------------CTCACCAACAGCAGCAGCA------------G-------------C---AACAAGCT--CACCAACAA-------------------------------------------------------CAAC-----------------------------------------------------AGCAGGTGAGTTCACCAGG-GTTCGCGTTTC--------------G-GCT----------------------------------------------------------------------------ACGGCTTT----T--CCTCTAAC----T-ACT------------------------------TT------------------------------------------------------------CT-----CTAC-CCTCCCGCAGA----TG-------------GCGCCAC-CGAC----------
droEug1	scf7180000409787:13607-13806 -		GC--CTGCCCACCACCACCCACCGG-----CCCACTCG---CCACA---CCACCAGCAGCA--------------T---CAACAACAACAACAG---------CAG--------------------CA---------GCAGCAG---------AA----------CCACCTCCC------------------------------------------------------ACAGCACCATCAAGCACAACAGC-----------------------AG------------------------------------CAGCAACAA-------------------------------------------------------CAGC---------------A------------------GC--------------------AG----------------------------------------------------------------------------------------------------------------------------A---G----ATC--TCCCAT----TGATGTCCTGATGAGGGTATTCCC--------------------------------------------------------------------------------CAATCGCCGGCGCAGCGATGTGGAGCAGCTGATGC----------------------
dm3	chr3R:20064525-20064727 +		TG--TT-CCATTTG------------------------------------------CAGCA--------------G---CAGCAGCAACAACAG---------CAG--------------------CA---------GCAGCAA---------C-AACAGCAGCAGCAGCAGC------------------------------------------------------------AACAACA-----------ACAACAGCAGC------------AGCAACAACAACAACAGCAGCCACCTGCAG---CTGGCCA---GCAC-----------------------------------------------------------------------------------------------------------------------------CAG----TTAGTGCCATGTAAGCACTTCGACCTGGAC----------------------------------------------------------------------------AT-----G----GAG--CAC-AT----C--------------------------------AATT------------------------------------------------------------CT-----CTGCAGCCGCCGCA--------------------------AA-AGGCACCGCCCGCT
droSim2	2r:19160409-19160708 -		GG--CTGCCACCGGCGACGG-CTGCCGCATCC------------TC---GCTGATGCACCACCACCAGGCGCTAC--------AGCAGCAGCATCTG---------------------GCATCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCCGCATCGACAGGAGTC-------------------------------------------CACACAA---AC---------------------CTCCTCCCAAACACATGGGTACAGGTGAGCTTAAT----GTCCTATTGTGAAAGCGGCCAAAAAA-AAG----------------------------------------------------------------------------ATGA---A----TTT--TGCAAT----T-GTTT------------------------------TGACC--------------GCATATCAATCATCTCTAAGCTATCCAACCTAACACCAAAATTT-----CTGTAGTCCCCGCAGCTATGCCGATCGTTTGGCACGGGCCAC-GGACTCCCCCAGGT
droSec2	scaffold_7:269431-269682 +		GT--T-GCCGGC----------------------------------------ACCGCAGCAACACTTGTTGGT--------GCAGCAGCAGCAGCAGCAGCAGCAA--------------------CA------------------GCAGC-------------------------AGCCGCAGCAACCACCG----------------CCG--CAGT---T------GCAGCAGCAACA-----------TGGC------------CCGCA------------G-------------C---CACAACTG--CAGCAACAG-------------------------------------------------------CAGCA------------GCA------------------ACACTCTCCCTCGGATGGC--------------------------------------------------------------------------------------------------------------------------------GG---T----T------CATCGAATT-GCTCG----------------------------CTGCCG--------------GCATCGCCGCCTTTGCTG--------CAGCAAACCGCAACTCCG-----CC-----------------GCAGGGCGCCCAGATTGTGCCGC-CCGTGTG-CGCGCT
droYak3	2R:16097503-16097755 -		GG--CTGCCACCGGCGACGG-CCGCCGCATCC------------TC---GCTGTTGCACCACCACCAGGCGCTCC--------AGCAGCAGCATCTG---------------------GCATCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCCGCATCGACAGGAGTC-------------------------------------------CACACAA---AC---------------------CTCCTCGCAGACACATGGATACAGGTAAGCTTACG----TTCCTATCATGCAATCAATCAGAAAG-GTG----------------------------------------------------------------------------ATGA---G----ATG--TACAAT----T--------------------------------AATG------------------------------------------------------------GT-----TTGTAGTCCCCGCAGCTATGCCGATCGTTTAGTCCGTGCCAC-GGACTCCCCCAGAT
droEre2	scaffold_4845:19993352-19993575 -		GG--CTGCCACCGGCGACGG-------------------------------TGATGCACCACCACCAGGCGCTCC--------AGCAGCAGCATCAG---------------------GCATCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGTCGCATCGACAGGAGTC-------------------------------------------CACGCAA---GC---------------------CTCCTCCCAGACACATGGGTACAGGTAAGCATAAC----GTCCTATTTTG--------------G-GAT----------------------------------------------------------------------------ATGA---G----ATG--TGCAAT----T--------------------------------AAGT------------------------------------------------------------TT-----CTGTAGTCCCCGCAGCTATGCCGATCGTTTGGTCCGGGCCAC-GGACTCCCCCAGAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GG--CTGCCCCCCGCTGCCG----------GCAATATG---CTGCA---TCATGTGCAGCA--------------A---CATCAGCAGCAACAG---------CAA--------------------CA---------GCAGCAA---------C-AACAGCAACAGCAGCAGC------------------------------------------------------------AGCAGCA-----------ACAACAACAAC------------AG---------------------------------------CAGCAG-------------------------------------------------------CAGCA------------GCA------------------GCTGCCCCATTCACATGGCTACAGGTGAGTCTTGA--------------------------------------------------------------------------TTGTTGC----C---------TTGTCGC---------TGC---G----T---------------------------------ATTCCAC----ACTGAAT------------------------------------------------------------GC-----TTGCAGTCCACGCAGCTATACGGAGCATTTGGTGCGTGCCAC-CGACTCGCCGCGTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................GCAGCAA---------C-AACAGCAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	3	0
.................................................................................................................................................................................................................................................................ACAAC------------AG---------------------------------------CAGCAG-------------------------------------------------------CAGCA------------GCA------------------GCTG.........................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................CAACAAC------------AG---------------------------------------CAGCAG-------------------------------------------------------CAGCA------------GCA------------------GC...........................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
................................................................................ATCAGCAGCAACAG---------CAA--------------------CA---------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	17	0.06	1	0	0	0	0	1	0
................................................................................ATCAGCAGCAACAG---------CAA--------------------CA---------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................AGCAGCA-----------ACAACAACAAC------------AG---------------------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...........................................................................A---CATCAGCAGCAACAG---------CAA--------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................AGCAGC------------------------------------------------------------AGCAGCA-----------ACAACAACAAC------------AG---------------------------------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................AA---------C-AACAGCAACAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
............................................................................................................................................GCAA---------C-AACAGCAACAGCAGCAGC------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................................................ACAG---------CAA--------------------CA---------GCAGCAA---------C-AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................A---------C-AACAGCAACAGCAGCAGC------------------------------------------------------------AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0

droVir3

GG--CTGCCGCCAGCCTCAG----------TCAACATG---CTGCA---TCAGGTGCAGCA--------------G---CATCAGGTGCAGCAGCAA-----------------------------CA---------ACAGCAA---------CA----------GCTGCAGCT------------------------------------------------------GCAGCAGCAACAGGCACAACAGC-----------------------AG---------------------------------------CAACAT-------------------------------------------------------CACCA------------GCA------------------GCTGCCGCATACGCATGGCTACAGGTGAGTCTTGG--------------------------------------------------------------------------TTT----CTGC-------------TCGC---------TGA---G----CTTCCCCCGAC------------------------------------TATAT------------------------------------------------------------GC-----TTGCAGTCCACGCAGCTATACGGAGCATTTGGTGCGTGCCAC-GGACTCGCCACGTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................AG----------TCAACATG---CTGCA---TCAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGCAGCAGCAA-----------------------------CA---------ACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GG--TTGCCGCCGGCAACAA----------TCTCTATG---ATGCA---TCAGGTGCAGCA--------------A---CATCAGCAGCAGCAGCAG-----------------------------CA---------GCAACAATTGCTGCAGCA----------ACAACAACA------------------------------------------------------GCAGCTGCAACA-----------------ACAAC------AACAACAG---------------------------------------CTGCAG-------------------------------------------------------CAGCA------------ACA------------------------ACATTCACATGGCTATAGGTAAGTTTTGGG----CT----------------------------------------------------------------------------------------TTTTCACTGCTCAAGTTGA---G----CTC--CCCAAC------------------------------------TAAAT------------------------------------------------------------AC-----TTGCAGTCCACGCAGCTATGCGGATCATCTGGTGCGGGCCAC-GGACTCGCCACGTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................ACAACA------------------------------------------------------GCAGCTGCAACA-----------------AC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	1	0
...............................................................................................................................................................................................................................................A-----------------ACAAC------AACAACAG---------------------------------------CTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0
............................................................................................................................................................................................................................................AACA-----------------ACAAC------AACAACAG---------------------------------------CTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0

droWil2

GG--CTACCACCAGCAGTG----------------------ATGCA---G------CAGCAACATCA--------T---CAACAGCAGCAACAGCAG-----------------------------CAGCAACAGTCAAACCAG---------AA----------GCAACAGTT------------------------------------------------------GCAACAGCAACA-----------ACAG------C------TGCAACAG---------------------------------------CAACAA-------------------------------------------------------CAGCA------------ACA------------------ATTCTCTCAGTCACATGGCTATAGGTGAGTGAAAGG--A----------------------------AAATGAAATTCCTCTGTTTCAAACACACACACAGTGTCATGTTTGTTTTTTTC-------------TTAC---------TTT---G----TTTCT----------------------------------TT----TCTGTTT------------------------------------------------------------GTTGTTAACGCAGTCCCCGCAGCTATGCCGAACGTTTGGCCCGTGCCAC-AGACTCACCCAGAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................GTCAAACCAG---------AA----------GCAACAGTT------------------------------------------------------GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
.........................................................AGCAACATCA--------T---CAACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.75	3	0	0	0	3	0
............................................................................................................................................................................................................................................................................................................................AACAA-------------------------------------------------------CAGCA------------ACA------------------ATTCT........................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	1	0
...........................................................CAACATCA--------T---CAACAGCAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0
..........................................................GCAACATCA--------T---CAACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	1	0
...........................................................CAACATCA--------T---CAACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	0	1	0
...................................................................................AGCAGCAACAGCAG-----------------------------CAGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0

dp5

GG--CTGCCCCCAGCGCCAA-CTCCACCAGCC------------CC---ACTGGTGCATCATCCCCTGACACACC--------AGCAACATCATCAGC---------------------A-----------------GCACCAACCGCTTCATCA----------GCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGCAGGC-------------------------------------------GACGCAG---CA---------------------GTCCTCACAACAGCACGGGTACAGGTGAGCCCCAAA--T----------------------------AGATT----------------------------------------------------------------------------A---C----T------CACCCACAT-ACTCACTCAGTCGTTTTCTTCC--------------------------------------------------------------------------------CCAAAGTCCGCGAAGCTATGCGGACCGTCTGGTTCGGGCCAC-AGACTCGCCCAGAT

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

GG--CTGCCCCCAGCGCCAA-CTCCACCAGCC------------CC---ACTGGTGCATCATCCCCTGACACACC--------AGCAACATCATCAGC---------------------A-----------------GCACCAACCGCTACATCA----------GCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGCAGGC-------------------------------------------GACGCAG---CA---------------------GTCCTCCCAACAGCACGGGTACAGGTGAGCCCCAAA--T----------------------------AGATT----------------------------------------------------------------------------A---C----T------CACCCACAT-ACTCACTCAGTCGTTTTCTTCC--------------------------------------------------------------------------------CCAAAGTCCGCGAAGCTATGCGGACCGTCTGGTTCGGGCCAC-AGACTCGCCCAGAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

TG--CAGC-A---------------------------------------GCAGCAGCAGCAGCA-----------A---CAGCAGCAGCAGCAGCAGCAGCAGTAC--------------------CA------------------GCTGC-------------------------AGCCGCACCAGTACCAG----------------CTG--CAGC---A------GCAGC-----------------------------------AGCA------------CCATCAGCA-CTACCTGCAA---CAG--CA---GCAC-------------------------------------------------CTGCAACAGC-----------------------------------------------------AACAGGTGCCGCCCGTT--C----------------------------TGATC----------------------------------------------------------------------------A---CCTCGT------CGCCGACGA-ACGGCTCCCG---GATAATACGGCAG-AGCTCCCAGCCGGAGTCGAGCAGCAC-----------------------------------------------------------------------GGCCATCTGCTGCGGCCCCC-ACT----CCGCCTA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AGCTCCCAGCCGGAGTCGAGCAGC............................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..........................................................GCAGCA-----------A---CAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0
.................................................................................GCAGCAGCAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	4
...............................................................A-----------A---CAGCAGCAGCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	1	2	0	0	0	0
.....AGC-A---------------------------------------GCAGCAGCAGCAGCA-----------A---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
...........................................................................A---CAGCAGCAGCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
.................................................................................GCAGCAGCAGCAGCAGCAGCAGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	17	0.06	1	1	0	0	0	0	0
........................................................CAGCAGCA-----------A---CAGCAGCAGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	17	0.06	1	0	0	1	0	0	0
..........................................................GCAGCA-----------A---CAGCAGCAGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
......GC-A---------------------------------------GCAGCAGCAGCAGCA-----------A---CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....................................................GCAGCAGCAGCA-----------A---CAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.......C-A---------------------------------------GCAGCAGCAGCAGCA-----------A---CAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
..............................................................CA-----------A---CAGCAGCAGCAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
.......................................................GCAGCAGCA-----------A---CAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.........A---------------------------------------GCAGCAGCAGCAGCA-----------A---CAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...................................................AGCAGCAGCAGCA-----------A---CAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.........A---------------------------------------GCAGCAGCAGCAGCA-----------A---CAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
......GC-A---------------------------------------GCAGCAGCAGCAGCA-----------A---CAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...............................................................................CAGCAGCAGCAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
..............................................................CA-----------A---CAGCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
...............................................................A-----------A---CAGCAGCAGCAGCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
............................................................AGCA-----------A---CAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0

droBip1

GC--T-GTCAGC--------------------AACATG------------------CAGCA--------------GCACCAGCAGCAGCAACAC---------CAGCAGCAGCAACATTACTATCA-----------------G---------CA----------GCA------------------------------------------------------------GCAGCAGC-----------------AACAGCAACAGCAACAGCA------------G-------------C---AGTTGGCT--C-------------------------------------------------------------------------ATAATCATAGCCACCAT--------------------------------CACATGACGCCTGC--------------------------------------------------------------------------CTA----CTACCAGCAGCAACATGCCGC---------TGT---C--------------------------------------AGTCAGCAGCAACTCACGGCTGGCAGCCAGCAACAC------------------------------------------GG-----C----------------------AACATTTCGCCCACTCCCC-TGGCC-T-CGCACT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CA--TCATCAGCACCAGC--------------------------------------------------------------AGCAGCAGCAACA-----------------------------------------------------GCAGCATCA----------CCACCACCAGCAGACCCACAACGCCCAG---------ATGGCCGCCGCCCAGCAGCAGCAGCAGAACC-----------------------------------------------------------------------------------------------ATCACAACGCCGTCGCCGCCTCGAATTCTGCCTCGCAGGCGCATTCAGCAGC-----------------------------------------------------AGCGGCTGCCGCCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------GCG--------------------------------------------------------------------------------GCCAATGCCGCCAACGGAGCTGGCGCCGCTGGAGC---ACAC-AGCCTGGCCGCTGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GC--A-GC-A---------------------------------------GCAGCAGCAGTATCACC--------------TGCAGCAGCATCAGCAGCAGCACTAT--------------------CA------------------GCTGC-------------------------AGCAGCAACACCACTTG----------------TCG--CAGC---A------GCAGC-----------------------------------AGCA------------G-------------C---ACTTGTCG--CAGCAGCAA-------------------------------------------------------CAGC-----------------------------------------------------AGCAGGTGCCGCCCGTT--T----------------------------TGATC----------------------------------------------------------------------------A---CCTCCT------CGCCCACGA-ATGGATCCAG---GATAATACGGCAG-AGCTCGCAGCCGGAGTCAAGCAGCAC-----------------------------------------------------------------------GGCGATTTGCTGCGGACCAC-ATACC-GCCTGCGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AT--CCGGCCTCGCCCGCCT----------GCACCATGGTGATGTTGCCGGCACCGCAGCAGCACTTGGTGGTGC--------AGCAACAGCAA--------------------------------CAGCAACAGTCACAGCAA---------CA----------GCAGCATGT------------------------------------------------------GCAGCAGCAACATGCCCATGCCC-----------------------CG---------------------------------------CAGCAA-------------------------------------------------------CAGCA------------GCA------------------ACACTCGCCCTCGGATGGC--------------------------------------------------------------------------------------------------------------------------------GG---T----T------CATCGAATT-GCTCGC----------------------------TGCCC--------------GCGTCTCCGCCCCTGTTG--------CAACAGACCGCTACGCCG-----CC-----------------GCAGGGCGCCCAGATTGTGCCGC-CCGTCTG-CGCCCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCAAT----G---TCGGC--------------ATCTCA---CC---------------CTA--------------CCTCAGTCAGCAGCAGCACCAGCAGCAGCAG--------------------CA------------GCAA------C----ATCTGCAGCAGCAACACCT------------------------------------------------------GCAGCAGCAACA-----------TCAT------C------CCCA------------------------------------------GCAGCAACCAGGTCGACAAAATTCCGCCGGCAGTTTGAACT---------------------------------------------------------------CCTCATTTATTTGGCGCGAGGCCAGTCCCAAC------------------AACTTTAAC-----------------------------------------------CTGTAC----T---------CC---------------AG---T----T------C---------------------GGTGTCTTCCTC----GCTGAAT------------------------------------------------------------GC-------GACGCCTGCGCAAAGGTACTCCCTAACTGGAGCGGGAGGA-GGATCGCCCTCCAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CG--CCGCCTATCAGGCCATG-----------CAGATG---CACCA---GCAGCAGCAGCA--------------G---CATCAGCAG--------------------------------------CAGCAACAACAACACCAG---------G----------------------CGGCCGTCTTCCACCATCAGGTTGCGACCATTGCCGCCCAGCAGCAGCAACAGCAGCAGCAACAGGCGCAAGTGC-----AGCATC------------AG---------------------------------------CAGCAG---------------CT-------------------------------------------GCAGCAG---CAGTTCCACTACCAGGCCCAGGCCCAAGCCCAGGCGCAGG--------------CCAT-----------------------------------------------GCTGCAGACGT-------------------------------------------------------------------------------------------------------------ACATGCAGCT---------------------------------------------------------------------------GCAGGTGAACAGTGCAGTGGGTGTG-GCCACCGCCCCTGCCACGCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GC--T-GC-ACCAGCAACAA-CAACAGCAGAC------------TC---AC----------------------------------------------------CAACAGCAGCAATCTCAC-----CA----------------------------------ACAACAACAGCA------------------------------------------------------GCAAA--------------------CTCACCAACAGCAGCAGCA------------G-------------C---AACAAGCT--CACCAACAA-------------------------------------------------------CAAC-----------------------------------------------------AGCAGGTGAGTTCACCAGG-GTTCGCGTTTC--------------G-GCT----------------------------------------------------------------------------ACGGCTTT----T--CCTCTAAC----T-ACT------------------------------TT------------------------------------------------------------CT-----CTAC-CCTCCCGCAGA----TG-------------GCGCCAC-CGAC----------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GC--CTGCCCACCACCACCCACCGG-----CCCACTCG---CCACA---CCACCAGCAGCA--------------T---CAACAACAACAACAG---------CAG--------------------CA---------GCAGCAG---------AA----------CCACCTCCC------------------------------------------------------ACAGCACCATCAAGCACAACAGC-----------------------AG------------------------------------CAGCAACAA-------------------------------------------------------CAGC---------------A------------------GC--------------------AG----------------------------------------------------------------------------------------------------------------------------A---G----ATC--TCCCAT----TGATGTCCTGATGAGGGTATTCCC--------------------------------------------------------------------------------CAATCGCCGGCGCAGCGATGTGGAGCAGCTGATGC----------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TG--TT-CCATTTG------------------------------------------CAGCA--------------G---CAGCAGCAACAACAG---------CAG--------------------CA---------GCAGCAA---------C-AACAGCAGCAGCAGCAGC------------------------------------------------------------AACAACA-----------ACAACAGCAGC------------AGCAACAACAACAACAGCAGCCACCTGCAG---CTGGCCA---GCAC-----------------------------------------------------------------------------------------------------------------------------CAG----TTAGTGCCATGTAAGCACTTCGACCTGGAC----------------------------------------------------------------------------AT-----G----GAG--CAC-AT----C--------------------------------AATT------------------------------------------------------------CT-----CTGCAGCCGCCGCA--------------------------AA-AGGCACCGCCCGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCGACCTGGAC----------------------------------------------------------------------------AT-----G----GAG--CAC-AT----.................................................................................................................................................................	25	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCTGGAC----------------------------------------------------------------------------AT-----G----GAG--CAC-AT----C--------------------------------AAT.............................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTCGACCTGGAC----------------------------------------------------------------------------AT-----G----GAG--CA.........................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................GC------------------------------------------------------------AACAACA-----------ACAACAGCAGC------------AGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................CAGC------------------------------------------------------------AACAACA-----------ACAACAGCAGC------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................C------------AGCAACAACAACAACAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AACA-----------ACAACAGCAGC------------AGCAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................G--------------------CA---------GCAGCAA---------C-AACAGCAGCAGCAGCAGC------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................C------------------------------------------------------------AACAACA-----------ACAACAGCAGC------------AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GG--CTGCCACCGGCGACGG-CTGCCGCATCC------------TC---GCTGATGCACCACCACCAGGCGCTAC--------AGCAGCAGCATCTG---------------------GCATCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCCGCATCGACAGGAGTC-------------------------------------------CACACAA---AC---------------------CTCCTCCCAAACACATGGGTACAGGTGAGCTTAAT----GTCCTATTGTGAAAGCGGCCAAAAAA-AAG----------------------------------------------------------------------------ATGA---A----TTT--TGCAAT----T-GTTT------------------------------TGACC--------------GCATATCAATCATCTCTAAGCTATCCAACCTAACACCAAAATTT-----CTGTAGTCCCCGCAGCTATGCCGATCGTTTGGCACGGGCCAC-GGACTCCCCCAGGT

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

GT--T-GCCGGC----------------------------------------ACCGCAGCAACACTTGTTGGT--------GCAGCAGCAGCAGCAGCAGCAGCAA--------------------CA------------------GCAGC-------------------------AGCCGCAGCAACCACCG----------------CCG--CAGT---T------GCAGCAGCAACA-----------TGGC------------CCGCA------------G-------------C---CACAACTG--CAGCAACAG-------------------------------------------------------CAGCA------------GCA------------------ACACTCTCCCTCGGATGGC--------------------------------------------------------------------------------------------------------------------------------GG---T----T------CATCGAATT-GCTCG----------------------------CTGCCG--------------GCATCGCCGCCTTTGCTG--------CAGCAAACCGCAACTCCG-----CC-----------------GCAGGGCGCCCAGATTGTGCCGC-CCGTGTG-CGCGCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................................................................................................................................................................................................................................................................GCA------------GCA------------------ACACTCTCCCTCGGATG............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACACTCTCCCTCGGATGGC--------------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................A------------------ACACTCTCCCTCGGATGGC--------------------------------------------------------------------------------------------------------------------------------GG---T----................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................CAACAG-------------------------------------------------------CAGCA------------GCA------------------ACACTCTCCCT..................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................T------GCAGCAGCAACA-----------TGGC------------CCGCA------------G-------------C---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.................................................................................................CAGCAGCAA--------------------CA------------------GCAGC-------------------------AGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	1	0	0	0
...........................................................................................CAGCAGCAGCAGCAA--------------------CA------------------GCAGC-------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0

droYak3

GG--CTGCCACCGGCGACGG-CCGCCGCATCC------------TC---GCTGTTGCACCACCACCAGGCGCTCC--------AGCAGCAGCATCTG---------------------GCATCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCCGCATCGACAGGAGTC-------------------------------------------CACACAA---AC---------------------CTCCTCGCAGACACATGGATACAGGTAAGCTTACG----TTCCTATCATGCAATCAATCAGAAAG-GTG----------------------------------------------------------------------------ATGA---G----ATG--TACAAT----T--------------------------------AATG------------------------------------------------------------GT-----TTGTAGTCCCCGCAGCTATGCCGATCGTTTAGTCCGTGCCAC-GGACTCCCCCAGAT

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

GG--CTGCCACCGGCGACGG-------------------------------TGATGCACCACCACCAGGCGCTCC--------AGCAGCAGCATCAG---------------------GCATCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGTCGCATCGACAGGAGTC-------------------------------------------CACGCAA---GC---------------------CTCCTCCCAGACACATGGGTACAGGTAAGCATAAC----GTCCTATTTTG--------------G-GAT----------------------------------------------------------------------------ATGA---G----ATG--TGCAAT----T--------------------------------AAGT------------------------------------------------------------TT-----CTGTAGTCCCCGCAGCTATGCCGATCGTTTGGTCCGGGCCAC-GGACTCCCCCAGAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGATCGTTTGGTCAT.....................	19	2	0.50	1	0	0	0	1	0	0	0

dmo_1054

scaffold_6496:9273765-9273915 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-12.3	-12.1	-11.8