dmo_1043

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGGTTCTCTGCAAAATTTTTGTGCTATTTGCACTGTTATTCAGCGCAACGGTATGTAGAATGGATATTAGTTAATTGGCACCTTTACCAGGTGCATATTTGTAGAGCAAGTAATACCAAGACTAAAAAAATTTATTTTTGATTCACTCTATCATATCTGTGTTCTAAATTTATCAATTGTCAAATATTTTTGAAAAATTATTAATTTGAATTTTATTAAATTTCATATCTATGAAGTGATTTATGATGTGT ************************************************(((((((((.(((((............((((((.....)))))).(((((((...)))))))....(((((.((((....)))).)))))))))).)))).))))).......................(((((....)))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo	V056 head	V049 head
..GTTCTCTGCAAAATTTTTGTG....................................................................................................................................................................................................................................	21	0	1	7.00	7	7	0	0	0	0
.................................TGTTATTCAGCGCAACGACATCT...................................................................................................................................................................................................	23	3	1	4.00	4	4	0	0	0	0
...............................ACTGTTATTCAGCGCAACGAC.......................................................................................................................................................................................................	21	2	1	4.00	4	3	1	0	0	0
..GTTCTCTGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	29	0	1	4.00	4	4	0	0	0	0
..GTTCTCTGCAAAATTTTTGTGCTATTTG.............................................................................................................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0
..GTTCTCTGCAAAATTTTTGTGCTATT...............................................................................................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0
.......CTGCAAAATTTTTGTGCTATTTGCACT.........................................................................................................................................................................................................................	27	0	1	2.00	2	2	0	0	0	0
......................GCTATTTGCACTGTTATTC..................................................................................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0
................................CTGTTATTCAGCGCAACGA........................................................................................................................................................................................................	19	1	1	2.00	2	1	1	0	0	0
.......................CTATTTGCACTGTTATTCAGC...............................................................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0
...............................ACTGTTATTCAGCGCAACGA........................................................................................................................................................................................................	20	1	1	2.00	2	2	0	0	0	0
..................................GTTATTCAGCGCAACGACATCT...................................................................................................................................................................................................	22	3	3	1.67	5	5	0	0	0	0
........................TATTTGCACTGTTATTCA.................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
......................GCTATTTGCACTGTTATTCAGCG..............................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
........AGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0
........TGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
..GTTCTCTGCAAAATTTTTGTGC...................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
...........AAAATTTTTGTGCTATTTGCACT.........................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
................................................................TATTAGTTAATTGGCACCTTTACCAGGTG..............................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0
...ATCTCTGCAAAATTTTTGTGCTATTTGCA...........................................................................................................................................................................................................................	29	1	1	1.00	1	1	0	0	0	0
..............................CACTGTTATTCAGCGCAACGACAT.....................................................................................................................................................................................................	24	2	1	1.00	1	1	0	0	0	0
.........GCAAAATTTTTGTGCTATTTGCACT.........................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
......................GCTATTTGCACTGTTATTCAGC...............................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
............AAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
...............................ACTGTTATTCAGCGCAACGACATCT...................................................................................................................................................................................................	25	3	1	1.00	1	1	0	0	0	0
.GGTTCTCTGCAAAATTTTTGTG....................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
.......................CTATTTGCACTGTTATTCAGCGCAACGA........................................................................................................................................................................................................	28	1	1	1.00	1	1	0	0	0	0
......TCTGCAAAATTTTTGTGCTATTTG.............................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
....TCTCTGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
........................TATTTGCACTGTTATTCAGCG..............................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
...TTCTCTGCAAAATTTTTGTGCTATT...............................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.........................................AGCGCAACGGTATGTAGAATG.............................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
..GTTCTCTGCAAAATTTTTG......................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
.....CTCTGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
......................GCTATTTGCACTGTTATTCAGCGCAACG.........................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
AGGTTCTCTGCAAAATTTTTGT.....................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
...............................ACTGTTATTCAGCGCAACGACAT.....................................................................................................................................................................................................	23	2	1	1.00	1	1	0	0	0	0
.GGTTCTCTGCAAAATTTTT.......................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
..GTTCTCTGCAAAATTTTTGTGCT..................................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
....TCTCTGCAAAATTTTTGTGCTATT...............................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
.GGTTCTCTGCAAAATTTTTGTGCTATTTG.............................................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0
...TTCTCTGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
....................................................ACTTAGAATGGATATTAGG....................................................................................................................................................................................	19	3	20	0.55	11	8	2	0	0	1
............................................................................................................................AAAAAATTTATTTTTGATCCCC.........................................................................................................	22	2	2	0.50	1	0	0	1	0	0
..................................GTTATTCAGCGCAACGACAT.....................................................................................................................................................................................................	20	2	3	0.33	1	1	0	0	0	0
....................................................ACGTAGACTGGATATTAG.....................................................................................................................................................................................	18	2	3	0.33	1	0	0	0	1	0
...................................TTATTCAGCGCAACGACATCT...................................................................................................................................................................................................	21	3	4	0.25	1	1	0	0	0	0
..................................GTTATTCAGCGCAACGACA......................................................................................................................................................................................................	19	2	4	0.25	1	1	0	0	0	0
....................................................ATTTAGAATGGATATTAGG....................................................................................................................................................................................	19	2	5	0.20	1	0	1	0	0	0
....................................................ACTTAGAATGGATATTAG.....................................................................................................................................................................................	18	2	15	0.13	2	0	0	0	1	1
.....................................................................GTTAATTGGGACCGTTGCC...................................................................................................................................................................	19	3	11	0.09	1	0	1	0	0	0
.........................................................................................................................................................................................................................................AAGGGATCTATGATGTG.	17	2	12	0.08	1	0	0	0	1	0
........................................................................................................................................................................................................TTAATTGGAATTTTATTA.................................	18	1	16	0.06	1	1	0	0	0	0
.......................................................................................................................................................................................................................................TAAAGGGATCTATGATGTG.	19	3	20	0.05	1	0	1	0	0	0
...........................................................ATGGATAGTAGTGATTTGG.............................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0

TCCAAGAGACGTTTTAAAAACACGATAAACGTGACAATAAGTCGCGTTGCCATACATCTTACCTATAATCAATTAACCGTGGAAATGGTCCACGTATAAACATCTCGTTCATTATGGTTCTGATTTTTTTAAATAAAAACTAAGTGAGATAGTATAGACACAAGATTTAAATAGTTAACAGTTTATAAAAACTTTTTAATAATTAAACTTAAAATAATTTAAAGTATAGATACTTCACTAAATACTACACA ************************************************(((((((((.(((((............((((((.....)))))).(((((((...)))))))....(((((.((((....)))).)))))))))).)))).))))).......................(((((....)))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	V041 embryo	V056 head	M046 female body
.............................................................................................................................TTTTTAAATAAAAACTTGGTGA........................................................................................................	22	2	1	2.00	2	2	0	0	0
....AGAGACGTTTTACAGACACTAT.................................................................................................................................................................................................................................	22	3	4	0.50	2	0	2	0	0
.....GAGCAGTTTTAAAGACACGAT.................................................................................................................................................................................................................................	21	3	4	0.25	1	0	1	0	0
.............................................................................................................................TTTTTAAATAAAAACTTGGTGAA.......................................................................................................	23	3	5	0.20	1	1	0	0	0
....AGAGCAGTTTTAAAAACACGTT.................................................................................................................................................................................................................................	22	3	5	0.20	1	0	1	0	0
..................................................................................................................CGATTGTGATTTTTTTAAATAAA..................................................................................................................	23	3	11	0.09	1	1	0	0	0
.............................................................................................................................TTTTTAAATAAAAACTTGGT..........................................................................................................	20	2	13	0.08	1	1	0	0	0
.....GAGAAGTTTTAACAACAAGAT.................................................................................................................................................................................................................................	21	3	16	0.06	1	0	0	1	0
....................................................TGAATCTTACCTATAATCC....................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1
ACCAAGGGACGGTTTAAAA........................................................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:8613982-8614232 +	dmo_1043	AGGTTCTCTGCAAAATTTTTGTGCTATTTGCACTGTTATTCAGCGCAACGGTATGTAGAATGGATATTAGTTAATTGGCACCTTTACCAGGTGCATATTTGTAGAGCAAGTAATACCAAGACTAAAAAAATTTATTTTTGATTCACTCTATCATATCTGTGTTCTAAATTTATCAATTGTCAAATATTTTTGAAAAATTATTAATTTGAATTTTATTAAATTTCATATCTATGAAGTGATTTATGATGTGT
droVir3	scaffold_12875:15211309-15211372 -		AGGTTCTCTACAAACTGGTAGTGCTCTGCGCACTGCTATTCACCTCAACGGTGAGTACTATTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:8125688-8125744 +		AGGTTCTCTGCAAATTGCTGGTGCTCTGCGCACTGGTATTTAGCGCGAACGTAAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004558:2444938-2444983 +		AGGTTCTATGCAAACTCCTGGTGGTTTGCTCGCTACTTTTTAGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	3:6373189-6373241 +		AGGTTCTCTGCAAAATATTAGCAGTGTGCTCGCTGCTCGTCAGCGCTCAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_2:6589335-6589387 +		AGGTTCTCTGCAAAATATTAGCAGTGTGCTCGCTGCTCGTCAGCGCTCAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302385:708765-708810 +		AGGTTCTTTGCAAAATATTAGCGGTGTGCTCGCTGCTCGTCAGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453948:1527861-1527906 -		AGGTTCTTTGCAAGTTTTTGACGCTCTGCTTGCTGCTCGTCGGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491214:301923-301990 -		AGGTTCTCTGCAAAATTTTAACAGTGTGCCTGCTGCTCGGTGGCGCTCAGGTGAGCATACCGAATACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779510:35553-35599 +		TGTATTTTA-----AATTTAACAATTAGCAAG--------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTGTGAAAAGTTAACAA-----------------------------------------------
droBia1	scf7180000301754:2633817-2633862 -		AGGTTCCGTGCAAAATATTAACCGTGTGCCTGCTGCTCGTCGGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415795:260194-260253 +		AGGTTCCGTGCAAAATATTAGCGGTGTGCTTGCTGCTCGTCGGCGCTCAGGTGAGAATGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409672:1182424-1182483 -		AGGTTCTCTGCAAAATATTAACGGTGTGCTTGCTGCTAGTCGGCGCTCAGGTGAGAATGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:13907804-13907849 +		AGGTTCCCTGCAAAATTTTAGCAGTTTGTCTGCTGCTCGTCGGTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:14597907-14597952 +		AGGTTCCCTGCAAAATTTTAGCAGTTTGTCTGCTGCTCGTCGGTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_1:11401969-11402014 +		AGGTTCCCTGCAAAATTTTAGCAGTTTGTCTGCTGCTCGTCGGTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2R:15271202-15271247 -		AGGTTCCCTGCAAAATTTTAGCAGTTTGTCTGCTGCTCGTCGGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4845:8135962-8136007 +		AGGTTCCCTGCAAAATTTTAGCAGTGTGTCTGCTGCTCGTCGGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AGGTTCTCTGCAAAATTTTTGTGCTATTTGCACTGTTATTCAGCGCAACGGTATGTAGAATGGATATTAGTTAATTGGCACCTTTACCAGGTGCATATTTGTAGAGCAAGTAATACCAAGACTAAAAAAATTTATTTTTGATTCACTCTATCATATCTGTGTTCTAAATTTATCAATTGTCAAATATTTTTGAAAAATTATTAATTTGAATTTTATTAAATTTCATATCTATGAAGTGATTTATGATGTGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..GTTCTCTGCAAAATTTTTGTG....................................................................................................................................................................................................................................	21	1	7.00	7	7	0	0	0	0	0
...............................ACTGTTATTCAGCGCAACGAC.......................................................................................................................................................................................................	21	1	4.00	4	3	0	0	0	0	1
..GTTCTCTGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	29	1	4.00	4	4	0	0	0	0	0
..GTTCTCTGCAAAATTTTTGTGCTATTTG.............................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
..GTTCTCTGCAAAATTTTTGTGCTATT...............................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.......CTGCAAAATTTTTGTGCTATTTGCACT.........................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
......................GCTATTTGCACTGTTATTC..................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
................................CTGTTATTCAGCGCAACGA........................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1
.......................CTATTTGCACTGTTATTCAGC...............................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
...............................ACTGTTATTCAGCGCAACGA........................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
........................TATTTGCACTGTTATTCA.................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
......................GCTATTTGCACTGTTATTCAGCG..............................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........TGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..GTTCTCTGCAAAATTTTTGTGC...................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........AAAATTTTTGTGCTATTTGCACT.........................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................TATTAGTTAATTGGCACCTTTACCAGGTG..............................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.........GCAAAATTTTTGTGCTATTTGCACT.........................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................GCTATTTGCACTGTTATTCAGC...............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............AAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.GGTTCTCTGCAAAATTTTTGTG....................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................CTATTTGCACTGTTATTCAGCGCAACGA........................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
......TCTGCAAAATTTTTGTGCTATTTG.............................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....TCTCTGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................TATTTGCACTGTTATTCAGCG..............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...TTCTCTGCAAAATTTTTGTGCTATT...............................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.........................................AGCGCAACGGTATGTAGAATG.............................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..GTTCTCTGCAAAATTTTTG......................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....CTCTGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................GCTATTTGCACTGTTATTCAGCGCAACG.........................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
AGGTTCTCTGCAAAATTTTTGT.....................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.GGTTCTCTGCAAAATTTTT.......................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..GTTCTCTGCAAAATTTTTGTGCT..................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....TCTCTGCAAAATTTTTGTGCTATT...............................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.GGTTCTCTGCAAAATTTTTGTGCTATTTG.............................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...TTCTCTGCAAAATTTTTGTGCTATTTGC............................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0

droVir3

AGGTTCTCTACAAACTGGTAGTGCTCTGCGCACTGCTATTCACCTCAACGGTGAGTACTATTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.GGTTCTCTACAAACTGGTAGT.....................................................................................................................................................................................................................................	21	1	7.00	7	0	0	4	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGTTCTCTACAAACTGGTA.......................................................................................................................................................................................................................................	19	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCTCTGCGCACTGCTATTCACCTCAAC..........................................................................................................................................................................................................	27	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTCTACAAACTGGTAGTGCTCTGCGCACT.........................................................................................................................................................................................................................	29	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGTTCTCTACAAACTGGTAGTG....................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTCTACAAACTGGTAGTGCTCTGCGCACC.........................................................................................................................................................................................................................	29	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AAACTGGTAGTGCTCTGCGCACT.........................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTGCTCTGCGCACTGCTATTG..................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CTCTGCGCACTGCTATTCACCTCAAC..........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTCTACAAACTGGTAGTGCTCTGCGCA...........................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CTACAAACTGGTAGTGCTCTGCGCACT.........................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TCTGCGCACTGCTATTCACCT..............................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CAAACTGGTAGTGCTCTGCGCACT.........................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCTCTGCGCACTGCTATTCACCT..............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................GCTCTGCGCACTGCTATTCACCTCAACG.........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGTTCTCTACAAACTGGTAGTGCC..................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TCTGCGCACTGCTATTCACCTCAAC..........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGTTCTCTACAAACTGGT........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AAACTGGTAGTGCTCTGCG.............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............AACTGGTAGTGCTCTGCGCACTGC.......................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTGCTCTGCGCACTGCTATTCACCTCAAC..........................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AGTGCTCTGCGCACTGCTATTCACCT..............................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GTTCTCTACAAACTGGTAGT.....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CTGGTAGTGCTCTGCGCACT.........................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AGGTTCTCTGCAAATTGCTGGTGCTCTGCGCACTGGTATTTAGCGCGAACGTAAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AGGTTCTATGCAAACTCCTGGTGGTTTGCTCGCTACTTTTTAGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....CTATGCAAACTCCTGGTGGT..................................................................................................................................................................................................................................	20	1	3.00	3	0	1	0	2	0
............AACTCCTGGTGGTTTGCTCGCT.........................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
.............ACTCCTGGTGGTTTGCTCG...........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............ACTCCTGGTGGTTTGCTCGCT.........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............ACTCCTGGTGGTTTGCTCGC..........................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....CTATGCAAACTCCTGGTGGTTT................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
............AACTCCTGGTGGTTTGCTC............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.....CTATGCAAACTCCTGGTGGTT.................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
AGGTTCTATGCAAACTCCTGGTGGTTTG...............................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
...........AAACTCCTGGTGGTTTGCTCGCT.........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.............ACTCCTGGTGGTTTGCTC............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............CTCCTGGTGGTTTGCTCGC..........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0

dp5

AGGTTCTCTGCAAAATATTAGCAGTGTGCTCGCTGCTCGTCAGCGCTCAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................GTGTGCTCGCTGCTCGTCAGC...............................................................................................................................................................................................................	21	1	14.00	14	0	14	0	0	0	0	0	0	0	0
.................................TGCTCGTCAGCGCTCAGGC.......................................................................................................................................................................................................	19	1	8.00	8	0	8	0	0	0	0	0	0	0	0
......................AGTGTGCTCGCTGCTCGTCAGC...............................................................................................................................................................................................................	22	1	6.00	6	0	6	0	0	0	0	0	0	0	0
.......................GTGTGCTCGCTGCTCGTCAGCGCT............................................................................................................................................................................................................	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.........................GTGCTCGCTGCTCGTCAGC...............................................................................................................................................................................................................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0
......................AGTGTGCTCGCTGCTCGTCAGCGCT............................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.................................TGCTCGTCAGCGCTCAGG........................................................................................................................................................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......................AGTGTGCTCGCTGCTCGTCAG................................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............ATATTAGCAGTGTGCTCGCT.........................................................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
........................TGTGCTCGCTGCTCGTCAGC...............................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............ATATTAGCAGTGTGCTCGCTGCTC.....................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................ATTAGCAGTGTGCTCGCTGCTCGTCAGC...............................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................GTGTGCTCGCTGCTCGTCA.................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................GTGTGCTCGCTGCTCGTC..................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..GTTCTCTGCAAAATATTAGC.....................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........GCAAAATATTAGCAGTGTGCTCGC..........................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............AAATATTAGCAGTGTGCTCGCT.........................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........AAAATATTAGCAGTGTGCTCGCT.........................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................AGTGTGCTCGCTGCTCGTCAGCGC.............................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........GCAAAATATTAGCAGTGTGCTCGCTGCT......................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................GTGTGCTCGCTGCTCGTCAG................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....CTCTGCAAAATATTAGCAGTGTGCTCGCT.........................................................................................................................................................................................................................	29	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..GTTCTCTGCAAAATATTAGCA....................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................CTGCTCGTCAGCGCTCAGGC.......................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................ATTAGCAGTGTGCTCGCTGCTC.....................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............ATATTAGCAGTGTGCTCGC..........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..GTTCTCTGCAAAATATTAGCAGT..................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GGTTCTCTGCAAAATATTAGCA....................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GCAGTGTGCTCGCTGCTCGTCA.................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............ATATTAGCAGTGTGCTCGCTGCT......................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....TCTCTGCAAAATATTAGCAGTGTGCTCG...........................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......TCTGCAAAATATTAGCAGTGTGCTCG...........................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................ATTAGCAGTGTGCTCGCTGCTCGT...................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................AGTGTGCTCGCTGCTCGT...................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................AGTGTGCTCGCTGCTCGTCAGCG..............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GCTCGCTGCTCGTCAGCGCTCAGGC.......................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GTGCTCGCTGCTCGTCAGCGCT............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GTGCTCGCTGCTCGTCAG................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......CTGCAAAATATTAGCAGTGTGCTC............................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......CTGCAAAATATTAGCAGTGTGCTCGC..........................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GTGCTCGCTGCTCGTCAGCGC.............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............AAATATTAGCAGTGTGCTCGC..........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GCTCGCTGCTCGTCAGCGCT............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........AAAATATTAGCAGTGTGCTCGC..........................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GTGCTCGCTGCTCGTCAGCGCTCAGGC.......................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............AATATTAGCAGTGTGCTCGCT.........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GCAGTGTGCTCGCTGCTCGTCAG................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................GTGTGCTCGCTGCTCGTCAGCGCTCA..........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........TGCAAAATATTAGCAGTGTGCTCGCT.........................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....TCTCTGCAAAATATTAGCA....................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GCAAAATATTAGCAGTGTGCT.............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................TGCTCGCTGCTCGTCAGCGCT............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............AAATATTAGCAGTGTGCTC............................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................TCGCTGCTCGTCAGCGCTCAGGC.......................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GGTTCTCTGCAAAATATTAGC.....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....CTCTGCAAAATATTAGCAGTGT................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CAAAATATTAGCAGTGTGCTCGCT.........................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........AAAATATTAGCAGTGTGCT.............................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................TTAGCAGTGTGCTCGCTGCT......................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GTGCTCGCTGCTCGTCAGCG..............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................TGCTCGCTGCTCGTCAGCGCTCAGGC.......................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........TGCAAAATATTAGCAGTGTG...............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GGTTCTCTGCAAAATATTAGCAGT..................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CAAAATATTAGCAGTGTGCT.............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....CTCTGCAAAATATTAGCA....................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................CGCTGCTCGTCAGCGCTCAGGC.......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................AGTGTGCTCGCTGCTCGTCA.................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGGTTCTCTGCAAAATATTAGCAGTGTGCTCGCTGCTCGTCAGCGCTCAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................AGTGTGCTCGCTGCTCGTCAG................................................................................................................................................................................................................	21	1	10.00	10	8	1	1	0	0	0
.......................GTGTGCTCGCTGCTCGTCAGC...............................................................................................................................................................................................................	21	1	3.00	3	0	2	1	0	0	0
......................AGTGTGCTCGCTGCTCGTCAGCGCT............................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.......................GTGTGCTCGCTGCTCGTCA.................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.GGTTCTCTGCAAAATATTAGC.....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................GCAGTGTGCTCGCTGCTCGTCAGC...............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................TGCTCGTCAGCGCTCAGGC.......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.............AATATTAGCAGTGTGCTCGCT.........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....CTCTGCAAAATATTAGCAGTGTGCTCGC..........................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
............................CTCGCTGCTCGTCAGCGCTCAGGC.......................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................ATTAGCAGTGTGCTCGCTGCTCGTC..................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................GTGTGCTCGCTGCTCGTCAG................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
................ATTAGCAGTGTGCTCGCTGCTC.....................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................ATTAGCAGTGTGCTCGCTGCT......................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................AGTGTGCTCGCTGCTCGTCAGCGC.............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................GTGTGCTCGCTGCTCGTCAGCGCT............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................AGTGTGCTCGCTGCTCGTCAGC...............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droKik1

AGGTTCTTTGCAAAATATTAGCGGTGTGCTCGCTGCTCGTCAGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGGTTCTTTGCAAGTTTTTGACGCTCTGCTTGCTGCTCGTCGGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGGTTCTCTGCAAAATTTTAACAGTGTGCCTGCTGCTCGGTGGCGCTCAGGTGAGCATACCGAATACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGTATTTTA-----AATTTAACAATTAGCAAG--------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTGTGAAAAGTTAACAA-----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGGTTCCGTGCAAAATATTAACCGTGTGCCTGCTGCTCGTCGGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGTTCCGTGCAAAATATTAGCGGTGTGCTTGCTGCTCGTCGGCGCTCAGGTGAGAATGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGGTTCTCTGCAAAATATTAACGGTGTGCTTGCTGCTAGTCGGCGCTCAGGTGAGAATGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGGTTCCCTGCAAAATTTTAGCAGTTTGTCTGCTGCTCGTCGGTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................GTTTGTCTGCTGCTCGTCGGT...............................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
......................AGTTTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........AAAATTTTAGCAGTTTGTCT............................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GTTCCCTGCAAAATTTTAGCA....................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AGTTTGTCTGCTGCTCGTCGGT...............................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................GTTTGTCTGCTGCTCGTCG.................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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......................AGTTTGTCTGCTGCTCGTCGG................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCAAAATTTTAGCAGTTTGT..............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGTCTGCTGCTCGTCGGT...............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGGTTCCCTGCAAAATTTTAGCAGTTTGTCTGCTGCTCGTCGGTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................GTTTGTCTGCTGCTCGTCGGT...............................................................................................................................................................................................................	21	1	18.00	18	0	15	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AGTTTGTCTGCTGCTCGTCGGT...............................................................................................................................................................................................................	22	1	6.00	6	0	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AGTTTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	19	1	4.00	4	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGTCTGCTGCTCGTCGGT...............................................................................................................................................................................................................	18	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATTTTAGCAGTTTGTCTG...........................................................................................................................................................................................................................	18	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTTTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	18	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TCCCTGCAAAATTTTAGC.....................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGTTCCCTGCAAAATTTTAGC.....................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTTTGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTTTGTCTGCTGCTCGTCGGG...............................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AAATTTTAGCAGTTTGTCTG...........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTTGTCTGCTGCTCGTCGGT...............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GTCTGCTGCTCGTCGGTG..............................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTTGTCTGCTGCTCGTCG.................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTTAGCAGTTTGTCTGCTGCT......................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AGTTTGTCTGCTGCTCGTCGGG...............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTTAGCAGTTTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTGTCTGCTGCTCGTCGGT...............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AATTTTAGCAGTTTGTCTG...........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGGTTCCCTGCAAAATTTTAGCAGTTTGTCTGCTGCTCGTCGGTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................GTTTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	18	1	4.00	4	0	0	4	0
.......................GTTTGTCTGCTGCTCGTCG.................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
.......................GTTTGTCTGCTGCTCGTCGGT...............................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0
..............ATTTTAGCAGTTTGTCTG...........................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
......................AGTTTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
......................AGTTTGTCTGCTGCTCGTCGGT...............................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
......................AGTTTGTCTGCTGCTCGTCG.................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
....TCCCTGCAAAATTTTAGCAGTTTGT..............................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.....................CAGTTTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

AGGTTCCCTGCAAAATTTTAGCAGTTTGTCTGCTGCTCGTCGGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................GTTTGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	21	1	14.00	14	1	3	1	0	0	1	8	0	0	0	0
......................AGTTTGTCTGCTGCTCGTCGG................................................................................................................................................................................................................	21	1	9.00	9	0	1	0	0	0	1	7	0	0	0	0
......................AGTTTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	19	1	7.00	7	0	4	0	0	0	0	3	0	0	0	0
.......................GTTTGTCTGCTGCTCGTCGG................................................................................................................................................................................................................	20	1	6.00	6	0	2	0	0	0	1	3	0	0	0	0
......................AGTTTGTCTGCTGCTCGTCG.................................................................................................................................................................................................................	20	1	5.00	5	0	3	0	0	0	0	2	0	0	0	0
.......................GTTTGTCTGCTGCTCGTCG.................................................................................................................................................................................................................	19	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
.GGTTCCCTGCAAAATTTTAGCA....................................................................................................................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
..GTTCCCTGCAAAATTTTAGCA....................................................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
..GTTCCCTGCAAAATTTTAGC.....................................................................................................................................................................................................................................	20	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0
.GGTTCCCTGCAAAATTTTAGC.....................................................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
......................AGTTTGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0
...TTCCCTGCAAAATTTTAGCA....................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................TGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	18	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0
.......................GTTTGTCTGCTGCTCGTCGGCG..............................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.GGTTCCCTGCAAAATTTTAGCAGT..................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................TTAGCAGTTTGTCTGCTGCTCGTCG.................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............ATTTTAGCAGTTTGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............ATTTTAGCAGTTTGTCTGCTGCT......................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............AATTTTAGCAGTTTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................GTTTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............AAATTTTAGCAGTTTGTCT............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................CAGTTTGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........AAAATTTTAGCAGTTTGTCT............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........AAAATTTTAGCAGTTTGTC.............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEre2

AGGTTCCCTGCAAAATTTTAGCAGTGTGTCTGCTGCTCGTCGGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................GTGTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	18	1	6.00	6	1	0	0	1	1	3	0
.......................GTGTGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	21	1	5.00	5	0	1	0	4	0	0	0
......................AGTGTGTCTGCTGCTCGTC..................................................................................................................................................................................................................	19	1	5.00	5	1	0	0	2	0	2	0
......................AGTGTGTCTGCTGCTCGTCGG................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	1	2	0
......................AGTGTGTCTGCTGCTCGTCGGCG..............................................................................................................................................................................................................	23	1	3.00	3	0	0	0	2	0	1	0
......................AGTGTGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0
......................AGTGTGTCTGCTGCTCGTCG.................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1	0
...........AAAATTTTAGCAGTGTGTCT............................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2	0
........................TGTGTCTGCTGCTCGTCGGCG..............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
............AAATTTTAGCAGTGTGTCT............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
............AAATTTTAGCAGTGTGTCTG...........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
........TGCAAAATTTTAGCAGTGTGTCTGC..........................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.....CCCTGCAAAATTTTAGCAGTGTGTCTGCT.........................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
..............ATTTTAGCAGTGTGTCTG...........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.................TTAGCAGTGTGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.GGTTCCCTGCAAAATTTTAGC.....................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
....TCCCTGCAAAATTTTAGC.....................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.........GCAAAATTTTAGCAGTGTGTCTGC..........................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.........................GTGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.......CTGCAAAATTTTAGCAGTGTGTCT............................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.......................GTGTGTCTGCTGCTCGTCGGCG..............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
...................AGCAGTGTGTCTGCTGCTCGTCGGC...............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.GGTTCCCTGCAAAATTTTAGCAGTGT................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.......................GTGTGTCTGCTGCTCGTCGG................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..............ATTTTAGCAGTGTGTCTGCT.........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0

dmo_1043

scaffold_6496:8614032-8614182 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.4	-25.1	-25.1