dmo_1032

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	+
DNAREP1_DM	RC	Helitron	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCACTATGCTCAAGGCGTTGCTGTTTACGTTTATGCCCAAGTTGATGAAGGTATTAATTGAGTAATGATATTTTTTGTAGCCTAACTCGATTGGAAATGGGAAATCGGGGTATATTGGTTTGGGAAACATATTTGTAACAGGCAAAAGGAGGCGTGGCTGTGCCCCTAAAATATTTATATAATCTTGACTAGGACGACAGGATGAGCTGAGTTGAGTCTGTCCATATGAATCCAGAGATCTCGTAAATCGC ************************************************....................((..((((..((((....(((((.............((((((((...(((((....(((....)))..)))))...............)))))))).............))))).....))))))))..))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V056 head
..................................................................................................................................................................................................CGACAGGATGAGCTGAGTTGAGT..................................	23	0	1	1.00	1	0	1	0
..........CAAGGCGTTGCTGTTTACGT.............................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	1
...............................................................................................................................................................................................GGACGACAGGATGAGCTG..........................................	18	0	1	1.00	1	1	0	0
....................................CCAATTTGATGAAGTTACTAAT.................................................................................................................................................................................................	22	3	2	1.00	2	2	0	0
.....................................CAATTTGATGAAGTTACTAAT.................................................................................................................................................................................................	21	3	19	0.58	11	8	3	0
.........................................TTGGTGAAGGTATTTAATGAG.............................................................................................................................................................................................	21	3	4	0.25	1	0	1	0
.................................................................................................TTGGAAATCGGGGTATATTGGT....................................................................................................................................	22	1	6	0.17	1	0	1	0
....................................................................................ACACGATTGGAAATGGGT.....................................................................................................................................................	18	2	6	0.17	1	1	0	0
.............................................................................................................GTATATTAGGTTGGGAAA............................................................................................................................	18	2	10	0.10	1	0	1	0
....................................CCAATTTGATGAAGTTACTAA..................................................................................................................................................................................................	21	3	14	0.07	1	1	0	0
............................................................................................................................AAACAAATTTGTAACGTGCAA..........................................................................................................	21	3	18	0.06	1	0	1	0

GGTGATACGAGTTCCGCAACGACAAATGCAAATACGGGTTCAACTACTTCCATAATTAACTCATTACTATAAAAAACATCGGATTGAGCTAACCTTTACCCTTTAGCCCCATATAACCAAACCCTTTGTATAAACATTGTCCGTTTTCCTCCGCACCGACACGGGGATTTTATAAATATATTAGAACTGATCCTGCTGTCCTACTCGACTCAACTCAGACAGGTATACTTAGGTCTCTAGAGCATTTAGCG ************************************************....................((..((((..((((....(((((.............((((((((...(((((....(((....)))..)))))...............)))))))).............))))).....))))))))..))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo	V110 male body
....................................GGTTAAACTACTTCAATGATT..................................................................................................................................................................................................	21	3	14	2.29	32	31	0	0	1
...................................................................................TTGAGCTAACCTTTACCCTTTATC................................................................................................................................................	24	1	1	1.00	1	0	1	0	0
....................................GGTTAAACTACTTCAATGATTA.................................................................................................................................................................................................	22	3	2	1.00	2	2	0	0	0
.................................ACGTGTTTAACTACTTCCAT......................................................................................................................................................................................................	20	2	1	1.00	1	1	0	0	0
..................................................................................................................................................................GGGGATCTTATAAATGTATTA....................................................................	21	2	1	1.00	1	0	0	1	0
.....................................GTTAAACTACTTCAATGATTA.................................................................................................................................................................................................	21	3	19	0.74	14	14	0	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:7976318-7976568 +	dmo_1032	CCACTATGCTCAAGGCGTT-GCTGTTTACGTTTATGCCCAAG----------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------ATGAAGGTATTAATTGAGTAATGATATTTTTTGTAGCCTAACTCGATTGGAAATGGGAAATCGGGGTATATTGGTTTGGGAAACATATTTGTAACAGGCAAAAGGAGGCGTGGCTGTGCCCCTAAAATATTTATATAATCTTGACTAGGACGACAGGATGAGCTGAGTTGAGTCTGTCCATATGAATCCAGAGATCTCGTAAATCGC
droVir3	scaffold_10592:1088-1313 +		GTTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----AGGTAGTCATCTT-----GG-----------------------ACATTTACTCTTTACT---CTTTTTATACCCTGAACCCATTAAAAATGGGTATA--AGGGTATATTGCCTTTGTGCAAATTGCAAATGTATGTAACAGGCAGAA-GGAAGCATATCTGACCCCATAAAGTATA--------T--ATATTCTTGATCAGCATCAATAGCTGAGTCGATCTAGCCATGTCCATCCGGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCT------------------------
droGri2	scaffold_14822:526190-526449 +		GCTTA-TTTTTAAT----------------------ATCAAGTTCATATGCA------------------------------------AGTATT--AATTTAATAATTTT-TCTAAACTG------------------------------------------------------TTTATCTACTTTTTATACCCTGAACGCATTAAAAATGGGTAAA-AATGGTATAATGGTTTTGTGCA-------AATGTATGTAACAGGCAGAA-AGAAGCATCTCCGATCCCATAAAGTATA--------T--ATATTCTTGATCAGGAT-AACAGCCGAACCGATATAGTCATGTCCGTCCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCTGTATGAAAACGCAGATCGCAGAGACCAT
droWil2	scf2_1100000011538:842-1104 -		CTATG---CTTAG-GTGCG-----------------------------------CTATGTACATTAGGTACCGAATTC-----------------------AATA-------------------------------------------------------AAGCCATTT--GTTCTTGAATAGTTTTTATACCATACACCCATA------GGGTGAA--ATGGTATATTAAAGTCGCCAA-------AATGTATGTAACAGGCAGAA-GGAAGCATCTCCGACCCCACAAAGTATA--------T--ATATTCTTGATCAGGATCACCAACCGAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTCCGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCTGTCCGTATGAACACCTAGATCTCGGAGATTGT
dp5	3:17181168-17181221 -		GGGCTGTCCTCAAGGTGAT-GCTTTTCATCCTGCTGCCCAAA----------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGGTAT
droPer2	scaffold_2515:304-420 -		AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTAACGCCCAGAA-GGAAGCGTGTCCGAACCCATAAAGTATA--------TATATATTCTTGATCAGCATCAATAGCCGAGTCGAT--------------TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTATCAACGCCTAGATCTCAGAGCCTAT
droAna3	scaffold_13266:7113813-7113865 +		GGGGTGGATTCAAGGTAGT-GCTGTACATTCTTGTGCCCAAG----------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGAAGGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395839:352290-352341 -		GGGAGATGGTCAAGGCCAT-TCTCTACACCCTGATGCCCAGG----------------------------------CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------ATGAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droKik1	scf7180000302470:1885941-1886022 -		CGGAC----TTAAAGTGTT-TCTCTATATTATAATGCCCAAG----------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------ATGAAGGTAAGAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTACCTGAATATTAAGATGCTTT
droFic1	scf7180000454066:547309-547368 +		GGTCGATGGCCAAGGCCAT-GCTCCACGCCCTCTTTCCTCGG----------------------------------CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------ATGAAGGTAACCATTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491347:557836-558016 +		TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATACCCG-TACTCGTA------AGGTAAA--AGGGTATATTATATTTGTTTA-------A-ATTATGTGACAGATAAAAAAAAAGCGTTTGAGACTTT-TAAAGTATA--------T--ATATTCTTGGTCAGGA-CAGCAGCTCAGTCGATCTAACCATGTCTGTCTGTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCACATGAACGTCGAGATCTCGGAAAGTAT
droRho1	scf7180000773769:749-1039 -		CTTCTATGCCCAAAGTATACGACGTTCTTAACAACGACGAAG-----------------------------------T--------------------A------------ATGA-----AAGTAGTTAACTA-----AGTTGCATTTAACTAATTTCAAATGCTATTT--TTTTTTATTTATTTATTATACCCGTTACTCGTA------GAGTAAA--AGGGTATATTGTATATGTCCA-------AAAGTATGTAACAGGTAGAA-GGAAGCGTTTCCGACCCTATAAAGTATA--------T--ATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTCCGTATAAACGCTGAGATCTCGGAAACTAT
droBia1	scf7180000302433:96977-97187 +		ACGTTCA---------------------------------------TACCTGAG----------------------TT-----------------------GAAAATTTT-GTTAAAATG-----------------AAA-----------------------AC--G---------A---CGTTTTTATATCCGTTACTCGTA------GAGTAA------GTATGTT---------AT-------TCAGTATGTAACAGGTAAAA-AGAAGCGTTTTCGACCCTATAAAGTATA--------TATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACGCTGAGAT-TCGGAAACTAT
droTak1	scf7180000415401:513709-513935 +		ACCATGCG--CAT----------G------------------------------TTATGTCCAT-------------------------------------------------CA-----A--TGGCTATCCGGTGAGTG-----------------------AC--TA------------ACTTTTTATATCCGTTACTCGTA------GAGTAAA--AGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGGGAGAA-GGAAGCGTGTTCGACTCCATAAAGTATA--------T--ATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCTGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACACTGAGATCTCGGAAACTAC
droEug1	scf7180000409445:31607-31814 -		GCCTTGG---------------------------------------------------------------------TTTATAAAGGTGACCATT--TAATTGATAGTGTTTTTTA---------------------------------------------------------------------AATTAG-TCCGTTACTCGTA------GAGTAAA--AGGGTATACTAGATGCGTTGA-------AGAATTTGTAACAGAAAAAA-GGAATTGTTTCCGACCCTATAAAGTATA--------T--ATAT-------------CGATAGCGAAGTCGATAGAGACATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACGCTGAGATCTCAGGAACTAT
dm3	chr2RHet:1740615-1740814 -		AAGGTGTA----------------------------------------------------------------------------------AATTCGTAAT--------------------------------------------------------------------TATTATTTTAT---TTTATCATATTGCTAAG------AAATTGGGTATACTAGGGTATACTAGACTCGTTGA-------AAAGTATGTAACAGCCAGAA-GGTAGCGTTTCCGACTATATAAAGTATA--------T--ATATTCTTAATCAGGATCAGTAGCGGA-----------CATGTCCATCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACGTCGAGATCTCAGGAACTAT
droSim2	2r:3244071-3244254 -		ATGATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATACCCC-TACTCGTA------GAGTAAA--AGCGTATAATAGATTCCTTGA-------AAAGTATGAAACAGGCAGAA-GG-AGCGTTTCCGACTATATAAAGTATA--------T--ATATTATTCATCAGGCTCAAAAGCCGAGTCGATCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGAGATCTCAGGAACTGT
droSec2	scaffold_8:2324236-2324425 +		TTGATCAGGTC------TT---------------------------TAACTGAGATATGC-CATTATTTGCCAGAT------------------------------------------------------------TATG-----------------------GC-------------------------------------------------AAC-AATTTTTAACTTGATTCGTTAA-------AAAGTTTGTAACAGGCAGAA-GGAAGCGTTTCCGACCATATAAAATATA--------T--ATATTCGTGATCAGGATCAATAG-----TCGAACTGGCCATGTCCGTCTATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------TCGAGATCTAAGGAACTAT
droYak3	v2_chr2h_random_006:13734-13967 +		ACATTACTTTCAAGGTGCG-GATGTTCATCTTTTTGTTTACA----------------------------------GT---------------------------------------------------------ATTTG-----------------------ACAATAATTTTCTTAT---GTATTTATACCCGTTACTCGTA------GAGTAAA--AGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAA-GGAAGCGTTTCCGACCATATAAAGTATA--------T--ATATTCTTGATCAGT----------------------CCATGTCCGTCTGTCCGT--------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTGTCCGTATGAACGTCGAGATCTCAGGAACTAC
droEre2	scaffold_4512:56681-56876 +		TAATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTTTATAGCCATTACTCTTA------GAATAAA--TGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAAAA-GGAAGCGTTTCCGACCCTATAATATATACTTTATACT--TTATTCTTGATCAGGATCAATAGCCGTGTCGAACTGGCCATGACTGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACTCCTCGACCTCAGGAACTAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CCACTATGCTCAAGGCGTT-GCTGTTTACGTTTATGCCCAAG----------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------ATGAAGGTATTAATTGAGTAATGATATTTTTTGTAGCCTAACTCGATTGGAAATGGGAAATCGGGGTATATTGGTTTGGGAAACATATTTGTAACAGGCAAAAGGAGGCGTGGCTGTGCCCCTAAAATATTTATATAATCTTGACTAGGACGACAGGATGAGCTGAGTTGAGTCTGTCCATATGAATCCAGAGATCTCGTAAATCGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGGATGAGCTGAGTTGAGT..................................	23	1	1.00	1	0	0	0	0	0	1
..........CAAGGCGTT-GCTGTTTACGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGACAGGATGAGCTG..........................................	18	1	1.00	1	1	0	0	0	0	0

droVir3

GTTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----AGGTAGTCATCTT-----GG-----------------------ACATTTACTCTTTACT---CTTTTTATACCCTGAACCCATTAAAAATGGGTATA--AGGGTATATTGCCTTTGTGCAAATTGCAAATGTATGTAACAGGCAGAA-GGAAGCATATCTGACCCCATAAAGTATA--------T--ATATTCTTGATCAGCATCAATAGCTGAGTCGATCTAGCCATGTCCATCCGGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCT------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................TTAAAAATGGGTATA--AGGGTATATTGC...........................................................................................................................................................................................................................................................................................................................................................	27	20	2.90	58	0	0	3	0	0	0	0	1	15	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	6	3	3	0	2	0	0	1	0	18	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTAAAAATGGGTATA--AGGGTATAT..............................................................................................................................................................................................................................................................................................................................................................	24	20	2.80	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTAAAAATGGGTATA--AGGGTATATTG............................................................................................................................................................................................................................................................................................................................................................	26	20	1.80	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................T--ATATTCTTGATCAGCATCAATAG........................................................................................................................................................................................................................................................	24	20	1.60	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----AGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	6	1.50	9	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGCAAATGTATGTAACAGGCAGAA-GG....................................................................................................................................................................................................................................................................................................................	26	20	0.80	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	1	0	1	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGCAAATGTATGTAACAGGCAGA........................................................................................................................................................................................................................................................................................................................	23	20	0.60	12	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGCAAATGTATGTAACAGGCAGAA-GGA...................................................................................................................................................................................................................................................................................................................	27	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................GTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----AGGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
...................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGC.......................................................................................................................................................................................................................................................	24	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GCAGAA-GGAAGCATATCTGACCC.....................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.33	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GTTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGTTT-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GTATGTAACAGGCAGAA-GGAAGCATA.............................................................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGCAAATGTATGTAACAGGCAGAA-G.....................................................................................................................................................................................................................................................................................................................	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTACTCTTTACT---CTTTTTATACC.................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.22	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GTATGTAACAGGCAGAA-GGAA..................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GTTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----AGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----AGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GTTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GTTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GTTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....A-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTCGTCA-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTACTCTTTACT---CTTTTTATACCCTGAAC...........................................................................................................................................................................................................................................................................................................................................................................................	29	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGTAACAGGCAGAA-GGAAGCAT..............................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCT......................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTAAAAATGGGTATA--AGGG...................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GTTCA-----------------------CGTT------------------------------------------------------------------ACTGTTAGTGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GAA-GGAAGCATATCTGACC......................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTACTCTTTACT---CTTTTTATACCCTGA.............................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCATCC..............................................................................................................................................................................................................................	19	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TTGTGCAAATTGCAAATGTATG...................................................................................................................................................................................................................................................................................................................................	22	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTACTCTTTACT---CTTTTTATACCC................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TACTCTTTACT---CTTTTTATACCC................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TCGTCA-----AGGTAGTCATCTT-----GG-----------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TACTCTTTACT---CTTTTTATACCCT...............................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TTACT---CTTTTTATACCCTGAACCCA........................................................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTACTCTTTACT---CTTTTTAT....................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGCAAATGTATGTAACAGGCAGAA-GGAA..................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GTATGTAACAGGCAGAA-G.....................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................T--ATATTCTTGATCAGCATCAATA.........................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ATGGGTATA--AGGGTATATTGC...........................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AATGTATGTAACAGGCAGAA-GG....................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TACT---CTTTTTATACCCTGAACCCATT......................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCTGAGTCGATCTAG..........................................................................................................................................................................................................................................	27	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GCAAATGTATGTAACAGGC...........................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GTATGTAACAGGCAGAA-GGAAGCAT..............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAA-GG....................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GTATGTAACAGGCAGAA-GGAAGCATATC...........................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGGGTATA--AGGGTATATTGC...........................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TTATACCCTGAACCCATTAAAAAT................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GTATGTAACAGGCAGAA-GGA...................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................TATGTAACAGGCAGAA-GGAAGC................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAA-GGA...................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAA-GGAAGCAT..............................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................T--ATATTCTTGATCAGCATCAA...........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAA-G.....................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCTGAGTCGATC.............................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGCAAATGTATGTAACAGGCAG.........................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAA-GGAAGCA...............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGCAAATGTATGTAACAGGCA..........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................ACCCATTAAAAATGGGTATA--AGGGTAT................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................AAAGTATA--------T--ATATTCTTGATCAGCA...............................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GTAACAGGCAGAA-GGAAGCAT..............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TA--------T--ATATTCTTGATCAGCATCAAT..........................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAA-GGAA..................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGA........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................ATTAAAAATGGGTATA--AGGG...................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAA-GGAAGCATA.............................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................ATAAAGTATA--------T--ATATTCTTGATCAGC................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTACTCTTTACT---CTTTTTATA...................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TA--------T--ATATTCTTGATCAGCA...............................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTATA--------T--ATATTCTTGATCAGCATCAAT..........................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AGTATA--------T--ATATTCTTGATCAGC................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GTAACAGGCAGAA-GGAAGCATA.............................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AATGGGTATA--AGGGTATATTG............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAA-......................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GCTTA-TTTTTAAT----------------------ATCAAGTTCATATGCA------------------------------------AGTATT--AATTTAATAATTTT-TCTAAACTG------------------------------------------------------TTTATCTACTTTTTATACCCTGAACGCATTAAAAATGGGTAAA-AATGGTATAATGGTTTTGTGCA-------AATGTATGTAACAGGCAGAA-AGAAGCATCTCCGATCCCATAAAGTATA--------T--ATATTCTTGATCAGGAT-AACAGCCGAACCGATATAGTCATGTCCGTCCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCTGTATGAAAACGCAGATCGCAGAGACCAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CTATG---CTTAG-GTGCG-----------------------------------CTATGTACATTAGGTACCGAATTC-----------------------AATA-------------------------------------------------------AAGCCATTT--GTTCTTGAATAGTTTTTATACCATACACCCATA------GGGTGAA--ATGGTATATTAAAGTCGCCAA-------AATGTATGTAACAGGCAGAA-GGAAGCATCTCCGACCCCACAAAGTATA--------T--ATATTCTTGATCAGGATCACCAACCGAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTCCGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCTGTCCGTATGAACACCTAGATCTCGGAGATTGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................................................................TCCGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCTGTCCGTATGAACACC.................	26	20	0.20	4	0	0	0	4	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACACCTAGATCTCGGAGATT..	25	7	0.14	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................TTGATCAGGATCACCAACCGA....................................................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................TA--------T--ATATTCTTGATCAGGATCACC..........................................................................................................................................................................................................................................................	24	14	0.07	1	0	0	0	1	0
.................................................................................................................................................................................................ATACACCCATA------GGGTGAA--ATG....................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCTGT........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCGTCCGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCT................................	21	20	0.05	1	0	0	1	0	0
........................................................................................................................................................................................................CATA------GGGTGAA--ATGGTATATTAAAGT........................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................TAGTTTTTATACCATACACCCATA------GGG.............................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0

dp5

GGGCTGTCCTCAAGGTGAT-GCTTTTCATCCTGCTGCCCAAA----------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGGTAT

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTAACGCCCAGAA-GGAAGCGTGTCCGAACCCATAAAGTATA--------TATATATTCTTGATCAGCATCAATAGCCGAGTCGAT--------------TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTATCAACGCCTAGATCTCAGAGCCTAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................................................................................................CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTATCAACGCCTAGATCTC.........	24	1	1.00	1	0	1	0	0	0	0

droAna3

GGGGTGGATTCAAGGTAGT-GCTGTACATTCTTGTGCCCAAG----------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGAAGGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

GGGAGATGGTCAAGGCCAT-TCTCTACACCCTGATGCCCAGG----------------------------------CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------ATGAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGGAC----TTAAAGTGTT-TCTCTATATTATAATGCCCAAG----------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------ATGAAGGTAAGAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTACCTGAATATTAAGATGCTTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGTCGATGGCCAAGGCCAT-GCTCCACGCCCTCTTTCCTCGG----------------------------------CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------ATGAAGGTAACCATTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATACCCG-TACTCGTA------AGGTAAA--AGGGTATATTATATTTGTTTA-------A-ATTATGTGACAGATAAAAAAAAAGCGTTTGAGACTTT-TAAAGTATA--------T--ATATTCTTGGTCAGGA-CAGCAGCTCAGTCGATCTAACCATGTCTGTCTGTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCACATGAACGTCGAGATCTCGGAAAGTAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTTCTATGCCCAAAGTATACGACGTTCTTAACAACGACGAAG-----------------------------------T--------------------A------------ATGA-----AAGTAGTTAACTA-----AGTTGCATTTAACTAATTTCAAATGCTATTT--TTTTTTATTTATTTATTATACCCGTTACTCGTA------GAGTAAA--AGGGTATATTGTATATGTCCA-------AAAGTATGTAACAGGTAGAA-GGAAGCGTTTCCGACCCTATAAAGTATA--------T--ATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTCCGTATAAACGCTGAGATCTCGGAAACTAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACGTTCA---------------------------------------TACCTGAG----------------------TT-----------------------GAAAATTTT-GTTAAAATG-----------------AAA-----------------------AC--G---------A---CGTTTTTATATCCGTTACTCGTA------GAGTAA------GTATGTT---------AT-------TCAGTATGTAACAGGTAAAA-AGAAGCGTTTTCGACCCTATAAAGTATA--------TATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACGCTGAGAT-TCGGAAACTAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACCATGCG--CAT----------G------------------------------TTATGTCCAT-------------------------------------------------CA-----A--TGGCTATCCGGTGAGTG-----------------------AC--TA------------ACTTTTTATATCCGTTACTCGTA------GAGTAAA--AGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGGGAGAA-GGAAGCGTGTTCGACTCCATAAAGTATA--------T--ATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCTGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACACTGAGATCTCGGAAACTAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GCCTTGG---------------------------------------------------------------------TTTATAAAGGTGACCATT--TAATTGATAGTGTTTTTTA---------------------------------------------------------------------AATTAG-TCCGTTACTCGTA------GAGTAAA--AGGGTATACTAGATGCGTTGA-------AGAATTTGTAACAGAAAAAA-GGAATTGTTTCCGACCCTATAAAGTATA--------T--ATAT-------------CGATAGCGAAGTCGATAGAGACATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACGCTGAGATCTCAGGAACTAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAGGTGTA----------------------------------------------------------------------------------AATTCGTAAT--------------------------------------------------------------------TATTATTTTAT---TTTATCATATTGCTAAG------AAATTGGGTATACTAGGGTATACTAGACTCGTTGA-------AAAGTATGTAACAGCCAGAA-GGTAGCGTTTCCGACTATATAAAGTATA--------T--ATATTCTTAATCAGGATCAGTAGCGGA-----------CATGTCCATCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACGTCGAGATCTCAGGAACTAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................TGTCCATCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACGTCGAGA.............	28	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCGAGATCTCAGG......	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGTCGAGATCTCAGGAACTA.	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGTCGAGATCTCA........	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTATGAACGTCGAGAT............	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................ATTTTAT---TTTATCATATTGCT..............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................................................................................TTGA-------AAAGTATGTAACAGCCAGAA-TT....................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATGATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATACCCC-TACTCGTA------GAGTAAA--AGCGTATAATAGATTCCTTGA-------AAAGTATGAAACAGGCAGAA-GG-AGCGTTTCCGACTATATAAAGTATA--------T--ATATTATTCATCAGGCTCAAAAGCCGAGTCGATCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGAGATCTCAGGAACTGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................TAAAGTATA--------T--ATATTATTCATCAGGC...............................................................................................................................................................................................................................................................	26	1	9.00	9	0	0	0	0	0	0	6	0	2	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGA...............	26	1	5.00	5	0	1	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTATA--------T--ATATTATTCATCAGGCTCA............................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TA------GAGTAAA--AGCGTATAATAGATTCCT.....................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................A-------AAAGTATGAAACAGGCAGAA-GG-A..................................................................................................................................................................................................................................................................................................................	24	2	3.00	6	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGAGATCTCAGG......	27	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................A-------AAAGTATGAAACAGGCAGAA-GG-AGC................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TATGAAACAGGCAGAA-GG-AGCGTTTC...........................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTATA--------T--ATATTATTCATCAGGCTCAAA..........................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGAGATC...........	25	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAACTTCGAGATCTCAGGAAC...	25	1	2.00	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GTATGAAACAGGCAGAA-GG-AG.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGAGAT............	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AA--AGCGTATAATAGATTCCTT....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGAACTTCGAGATCTCAGGAAC...	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................ATGAAACAGGCAGAA-GG-AGCGTT.............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGG...............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGAGA.............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGAGA.............	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................A------GAGTAAA--AGCGTATAATAGATTCCT.....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTATA--------T--ATATTATTCATCAGGCTC.............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGAGATT...........	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGAGATCTC.........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTATGAACTTCGAGATCTCAGGA.....	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGA...............	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCGAGATCTCAGGAAC...	19	6	1.00	6	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TATGAAACAGGCAGAA-GG-AGCGTT.............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATA--------T--ATATTATTCATCAGGCTC.............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGAGATCTCAGGA.....	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTATGAACTTCGAGATCTCAGGAAC...	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................AAAGCCGAGTCGATCTAGCCATGTCCGTC...............................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TTCCTTGA-------AAAGTATGAAACAGG............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TATAAAGTATA--------T--ATATTATTCATCAGGC...............................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GTATGAAACAGGCAGAA-GG-AGCG...............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AAGCCGAGTCGATCTAGCCATGTCCGTC...............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................AGTATGAAACAGGCAGAA-GG-AGCGT..............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACTTCGAGATCTCAGGAACTGT	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCG................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TATGAAACAGGCAGAA-GG-AGCGTTT............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................AAAGCCGAGTCGATCTAGCCATGTCCGT................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTCGA...............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................A-------AAAGTATGAAACAGGCAGAA-GG-AG.................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAA.....................	28	4	0.75	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAAC....................	27	4	0.75	3	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTTT.................	28	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTTCGAGATCTCAGGAACTG.	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACT...................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTATGAACTTCGAGATCTCAGGAAA...	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTT..................	29	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACTT..................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTATGAACTTCGAGATCTCAGGAAA...	28	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAACT...................	28	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................A-------AAAGTATGAAACAGGCAGAA-......................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT...........................	27	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TCAAAAGCCGAGTCGATCTAGCCA.......................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTTCGAGATCTCAGG......	19	6	0.33	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTTCGAGATCTCAGGA.....	20	6	0.33	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GTATA--------T--ATATTATTC......................................................................................................................................................................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGAGATCTCAGGAAC...	18	7	0.29	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATG.......................	26	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGA......................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTC...............................................................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	1	3	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGA......................	28	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTA.........................	22	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAA.....................	26	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGA......................	25	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................AGATTCCTTGA-------AAAG.......................................................................................................................................................................................................................................................................................................................................	15	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAA.....................	24	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAAC....................	23	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTATGAAA....................	22	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TATGAAACAGGCAGAA-GG-A..................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACTTCGAGATCT..........	17	13	0.15	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCG.................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTC...............................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATG.....................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTTCGAGATCTCA........	17	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCGAGATCTCAGGA.....	17	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC............................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCC..................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTT...............................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGT................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTTCGAGATCTC.........	17	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGATCTCAGGA.....	15	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................C-TACTCGTA------GAGTAAA--.......................................................................................................................................................................................................................................................................................................................................................................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGT....................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC............................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................	27	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T..............................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCATGTCCGTC...............................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCATGTCCGTCT..............................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTGATCAGGTC------TT---------------------------TAACTGAGATATGC-CATTATTTGCCAGAT------------------------------------------------------------TATG-----------------------GC-------------------------------------------------AAC-AATTTTTAACTTGATTCGTTAA-------AAAGTTTGTAACAGGCAGAA-GGAAGCGTTTCCGACCATATAAAATATA--------T--ATATTCGTGATCAGGATCAATAG-----TCGAACTGGCCATGTCCGTCTATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------TCGAGATCTAAGGAACTAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------...................	18	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................GCAGAA-GGAAGCGTTTCCGACCATA...................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0

droYak3

ACATTACTTTCAAGGTGCG-GATGTTCATCTTTTTGTTTACA----------------------------------GT---------------------------------------------------------ATTTG-----------------------ACAATAATTTTCTTAT---GTATTTATACCCGTTACTCGTA------GAGTAAA--AGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAA-GGAAGCGTTTCCGACCATATAAAGTATA--------T--ATATTCTTGATCAGT----------------------CCATGTCCGTCTGTCCGT--------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTGTCCGTATGAACGTCGAGATCTCAGGAACTAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTATGAACGTCGAGATCTCAGG......	27	20	0.90	18	0	18	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TACTCGTA------GAGTAAA--AGGGTATACTAGA..........................................................................................................................................................................................................................................................................................................................................................	28	20	0.75	15	0	0	0	0	0	0	0	0	0	0	15
..................................................................................................................................................................................................................................ACTAGATTCGTTGA-------AA.........................................................................................................................................................................................................................................................................................................................................	16	20	0.65	13	0	0	0	0	0	0	0	0	0	0	13
.........................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGCA..........................................................................................................................................................................................................................................................................................................................	24	20	0.60	12	0	12	0	0	0	0	0	0	0	0	0
....TACTTTCAAGGTGCG-GATGTTCATCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CGTTGA-------AAAGTATGTAACAGG............................................................................................................................................................................................................................................................................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TATTTATACCCGTTACTCGTA------GAG.............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GA-------AAAGTATGTAACAGGCAGAA-GGAAG.................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAACGTCGAGATCTCA........	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................T---GTATTTATACCCGTTACTCGTA------GAG.............................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GAGTAAA--AGGGTATACTAGATTCGTT....................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................ATTCGTTGA-------AAAGTATGTAACAGG............................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGTAACAGGCAGAA-GGAAGCGTTT............................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CCGACCATATAAAGTATA--------T--ATATTCTT.......................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAGGCAGAA-......................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................T---GTATTTATACCCGTTACTCGTA------GAGT............................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CGT--------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTGTCCGTATGAACGTCGAGA.............	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCGAGATCTCAGGAA....	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGT--------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTGTCCGTATGAA.....................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TAGATTCGTTGA-------AAAGTATGTAACAG.............................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGTCCGT--------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTGTC.............................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TAATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTTTATAGCCATTACTCTTA------GAATAAA--TGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAAAA-GGAAGCGTTTCCGACCCTATAATATATACTTTATACT--TTATTCTTGATCAGGATCAATAGCCGTGTCGAACTGGCCATGACTGTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACTCCTCGACCTCAGGAACTAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGTGTCGA...............................................................................................................................................................................................................................................	26	5	5.60	28	0	0	0	0	0	0	28
............................................................................................................................................................................................................................................TTGA-------AAAGTATGTAACAGGCAAAA-GGA...................................................................................................................................................................................................................................................................................................................	27	13	0.23	3	0	0	0	0	0	0	3
........................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGCAAAA-......................................................................................................................................................................................................................................................................................................................	28	13	0.15	2	0	0	0	0	0	0	2
.............................................................................................................................................................................................................................................................TGTAACAGGCAAAA-GGAAGCGTT.............................................................................................................................................................................................................................................................................................................	23	7	0.14	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGTGT..................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATCAATAGCCGT....................................................................................................................................................................................................................................................	25	14	0.07	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................GGCAAAA-GGAAGCGTTTCC..........................................................................................................................................................................................................................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCG.....................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0

dmo_1032

scaffold_6496:7976368-7976518 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads